Multiple sequence alignment - TraesCS5B01G252500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G252500 chr5B 100.000 4769 0 0 969 5737 435155237 435160005 0.000000e+00 8807.0
1 TraesCS5B01G252500 chr5B 100.000 651 0 0 1 651 435154269 435154919 0.000000e+00 1203.0
2 TraesCS5B01G252500 chr5A 90.942 2462 126 51 980 3396 469607308 469609717 0.000000e+00 3221.0
3 TraesCS5B01G252500 chr5A 93.306 1464 63 10 3481 4921 469609746 469611197 0.000000e+00 2128.0
4 TraesCS5B01G252500 chr5A 84.138 580 46 21 102 650 469606746 469607310 2.370000e-143 520.0
5 TraesCS5B01G252500 chr5A 88.502 287 29 3 5440 5725 469611919 469612202 1.530000e-90 344.0
6 TraesCS5B01G252500 chr5A 85.057 174 15 4 5119 5285 469611534 469611703 3.560000e-37 167.0
7 TraesCS5B01G252500 chr5D 93.519 1543 59 15 3481 5001 367690958 367692481 0.000000e+00 2257.0
8 TraesCS5B01G252500 chr5D 94.480 1413 58 7 1996 3394 367689515 367690921 0.000000e+00 2159.0
9 TraesCS5B01G252500 chr5D 90.656 1006 39 24 978 1966 367688267 367689234 0.000000e+00 1286.0
10 TraesCS5B01G252500 chr5D 83.813 278 21 13 103 364 367687522 367687791 5.740000e-60 243.0
11 TraesCS5B01G252500 chr5D 82.759 203 20 9 5119 5307 367692761 367692962 3.560000e-37 167.0
12 TraesCS5B01G252500 chr5D 80.189 212 13 11 443 650 367688085 367688271 1.300000e-26 132.0
13 TraesCS5B01G252500 chr5D 94.000 50 3 0 52 101 367687289 367687338 6.160000e-10 76.8
14 TraesCS5B01G252500 chr2A 79.854 412 75 8 3924 4331 642910688 642911095 1.560000e-75 294.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G252500 chr5B 435154269 435160005 5736 False 5005.000000 8807 100.000 1 5737 2 chr5B.!!$F1 5736
1 TraesCS5B01G252500 chr5A 469606746 469612202 5456 False 1276.000000 3221 88.389 102 5725 5 chr5A.!!$F1 5623
2 TraesCS5B01G252500 chr5D 367687289 367692962 5673 False 902.971429 2257 88.488 52 5307 7 chr5D.!!$F1 5255

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 669 0.109342 ATCATCATCAACCGCTCCCC 59.891 55.0 0.00 0.00 0.00 4.81 F
557 1013 0.518636 TTGTCTCTTTGCAGCGCATC 59.481 50.0 11.47 0.00 38.76 3.91 F
2163 2937 0.173481 TGTGCTGATACGCTGTCTCC 59.827 55.0 0.00 0.00 0.00 3.71 F
2493 3273 0.179936 CCCCAGAGGCAGAATCTGAC 59.820 60.0 15.38 12.01 45.80 3.51 F
3453 4249 0.030101 CGTTGTTGGGTTTCATGCGT 59.970 50.0 0.00 0.00 0.00 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 2168 0.031515 TATCCCCAAAGAGGCGAGGA 60.032 55.0 0.00 0.0 35.39 3.71 R
2286 3066 0.034089 GCATACTTTGGGAGGCAGGT 60.034 55.0 0.00 0.0 0.00 4.00 R
3434 4230 0.030101 ACGCATGAAACCCAACAACG 59.970 50.0 0.00 0.0 0.00 4.10 R
4072 4868 0.178964 CCTTGAAAGGGGTCTTGCCA 60.179 55.0 0.76 0.0 42.66 4.92 R
5183 6246 0.029567 CAGCCGAGAGATACGTCCAC 59.970 60.0 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.269505 AGCAGCAAGAGTACCATAACTAG 57.730 43.478 0.00 0.00 0.00 2.57
23 24 4.100189 AGCAGCAAGAGTACCATAACTAGG 59.900 45.833 0.00 0.00 0.00 3.02
24 25 4.099573 GCAGCAAGAGTACCATAACTAGGA 59.900 45.833 0.00 0.00 0.00 2.94
25 26 5.221541 GCAGCAAGAGTACCATAACTAGGAT 60.222 44.000 0.00 0.00 0.00 3.24
26 27 6.451393 CAGCAAGAGTACCATAACTAGGATC 58.549 44.000 0.00 0.00 0.00 3.36
27 28 6.266558 CAGCAAGAGTACCATAACTAGGATCT 59.733 42.308 0.00 0.00 0.00 2.75
28 29 6.266558 AGCAAGAGTACCATAACTAGGATCTG 59.733 42.308 0.00 0.00 0.00 2.90
29 30 6.517529 GCAAGAGTACCATAACTAGGATCTGG 60.518 46.154 0.00 0.00 0.00 3.86
30 31 6.282568 AGAGTACCATAACTAGGATCTGGT 57.717 41.667 11.09 11.09 42.62 4.00
31 32 6.071984 AGAGTACCATAACTAGGATCTGGTG 58.928 44.000 14.39 0.00 40.34 4.17
32 33 6.027025 AGTACCATAACTAGGATCTGGTGA 57.973 41.667 14.39 0.00 40.34 4.02
33 34 6.441222 AGTACCATAACTAGGATCTGGTGAA 58.559 40.000 14.39 0.00 40.34 3.18
34 35 6.901300 AGTACCATAACTAGGATCTGGTGAAA 59.099 38.462 14.39 0.00 40.34 2.69
35 36 5.990668 ACCATAACTAGGATCTGGTGAAAC 58.009 41.667 6.95 0.00 38.74 2.78
66 67 9.457436 TTCCTTCCCTATAAGTGTTTGTTATTC 57.543 33.333 0.00 0.00 0.00 1.75
67 68 8.832735 TCCTTCCCTATAAGTGTTTGTTATTCT 58.167 33.333 0.00 0.00 0.00 2.40
71 72 7.046033 CCCTATAAGTGTTTGTTATTCTCCGT 58.954 38.462 0.00 0.00 0.00 4.69
129 313 4.318121 CGCTTGACTCTACAACACAAACTC 60.318 45.833 0.00 0.00 0.00 3.01
144 328 5.645497 ACACAAACTCTTAGATCAATGCCTC 59.355 40.000 0.00 0.00 0.00 4.70
146 330 7.044181 CACAAACTCTTAGATCAATGCCTCTA 58.956 38.462 0.00 0.00 0.00 2.43
164 348 6.097554 TGCCTCTAAATTCCAAAACAAACTCA 59.902 34.615 0.00 0.00 0.00 3.41
168 352 9.533253 CTCTAAATTCCAAAACAAACTCATGTT 57.467 29.630 0.00 0.00 45.12 2.71
211 404 5.073691 CCCCTATGAAACCCTAGATCACAAT 59.926 44.000 0.00 0.00 0.00 2.71
269 467 2.235650 CCAGATCTCTGCAACAGGAAGA 59.764 50.000 0.00 0.00 42.47 2.87
274 472 0.843309 TCTGCAACAGGAAGAACCCA 59.157 50.000 0.00 0.00 40.05 4.51
372 596 4.814294 CTGCACGCCGTACCCTCC 62.814 72.222 0.00 0.00 0.00 4.30
399 623 1.617233 GGCTACCCACCCTAACCCA 60.617 63.158 0.00 0.00 0.00 4.51
400 624 1.632965 GGCTACCCACCCTAACCCAG 61.633 65.000 0.00 0.00 0.00 4.45
401 625 1.632965 GCTACCCACCCTAACCCAGG 61.633 65.000 0.00 0.00 45.07 4.45
402 626 0.253020 CTACCCACCCTAACCCAGGT 60.253 60.000 0.00 0.00 43.80 4.00
403 627 0.196631 TACCCACCCTAACCCAGGTT 59.803 55.000 7.34 7.34 43.80 3.50
404 628 0.703407 ACCCACCCTAACCCAGGTTT 60.703 55.000 7.50 0.00 43.80 3.27
406 630 1.711942 CCCACCCTAACCCAGGTTTAA 59.288 52.381 7.50 0.00 43.80 1.52
436 667 1.233019 CCATCATCATCAACCGCTCC 58.767 55.000 0.00 0.00 0.00 4.70
437 668 1.233019 CATCATCATCAACCGCTCCC 58.767 55.000 0.00 0.00 0.00 4.30
438 669 0.109342 ATCATCATCAACCGCTCCCC 59.891 55.000 0.00 0.00 0.00 4.81
439 670 1.889105 CATCATCAACCGCTCCCCG 60.889 63.158 0.00 0.00 0.00 5.73
512 968 4.735599 GACCCGTCCCTCCCCCTT 62.736 72.222 0.00 0.00 0.00 3.95
513 969 4.735599 ACCCGTCCCTCCCCCTTC 62.736 72.222 0.00 0.00 0.00 3.46
516 972 4.416601 CGTCCCTCCCCCTTCCCT 62.417 72.222 0.00 0.00 0.00 4.20
517 973 2.367107 GTCCCTCCCCCTTCCCTC 60.367 72.222 0.00 0.00 0.00 4.30
518 974 3.707189 TCCCTCCCCCTTCCCTCC 61.707 72.222 0.00 0.00 0.00 4.30
519 975 4.845307 CCCTCCCCCTTCCCTCCC 62.845 77.778 0.00 0.00 0.00 4.30
520 976 4.845307 CCTCCCCCTTCCCTCCCC 62.845 77.778 0.00 0.00 0.00 4.81
521 977 3.711782 CTCCCCCTTCCCTCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
522 978 3.224269 TCCCCCTTCCCTCCCCTT 61.224 66.667 0.00 0.00 0.00 3.95
523 979 2.696504 CCCCCTTCCCTCCCCTTC 60.697 72.222 0.00 0.00 0.00 3.46
524 980 2.461637 CCCCTTCCCTCCCCTTCT 59.538 66.667 0.00 0.00 0.00 2.85
525 981 1.694525 CCCCTTCCCTCCCCTTCTC 60.695 68.421 0.00 0.00 0.00 2.87
526 982 1.694525 CCCTTCCCTCCCCTTCTCC 60.695 68.421 0.00 0.00 0.00 3.71
527 983 1.694525 CCTTCCCTCCCCTTCTCCC 60.695 68.421 0.00 0.00 0.00 4.30
528 984 1.694525 CTTCCCTCCCCTTCTCCCC 60.695 68.421 0.00 0.00 0.00 4.81
529 985 3.283467 TTCCCTCCCCTTCTCCCCC 62.283 68.421 0.00 0.00 0.00 5.40
552 1008 1.441682 GCGCTTGTCTCTTTGCAGC 60.442 57.895 0.00 0.00 0.00 5.25
553 1009 1.154525 CGCTTGTCTCTTTGCAGCG 60.155 57.895 0.00 0.00 37.93 5.18
554 1010 1.441682 GCTTGTCTCTTTGCAGCGC 60.442 57.895 0.00 0.00 0.00 5.92
555 1011 1.944035 CTTGTCTCTTTGCAGCGCA 59.056 52.632 11.47 0.00 36.47 6.09
556 1012 0.520404 CTTGTCTCTTTGCAGCGCAT 59.480 50.000 11.47 0.00 38.76 4.73
557 1013 0.518636 TTGTCTCTTTGCAGCGCATC 59.481 50.000 11.47 0.00 38.76 3.91
558 1014 1.059994 GTCTCTTTGCAGCGCATCG 59.940 57.895 11.47 0.00 38.76 3.84
595 1051 4.341783 GCCACTGACCCAGCAGCT 62.342 66.667 0.00 0.00 39.51 4.24
645 1116 3.491104 CCAATTAGTACTCTCGCCACTCC 60.491 52.174 0.00 0.00 0.00 3.85
646 1117 2.502142 TTAGTACTCTCGCCACTCCA 57.498 50.000 0.00 0.00 0.00 3.86
647 1118 1.747709 TAGTACTCTCGCCACTCCAC 58.252 55.000 0.00 0.00 0.00 4.02
648 1119 0.966370 AGTACTCTCGCCACTCCACC 60.966 60.000 0.00 0.00 0.00 4.61
649 1120 1.681327 TACTCTCGCCACTCCACCC 60.681 63.158 0.00 0.00 0.00 4.61
650 1121 3.775654 CTCTCGCCACTCCACCCC 61.776 72.222 0.00 0.00 0.00 4.95
1064 1544 0.899019 GAGAGGAGGAATATCCCGCC 59.101 60.000 0.00 0.00 45.25 6.13
1066 1546 2.047179 GGAGGAATATCCCGCCGC 60.047 66.667 0.00 0.00 37.19 6.53
1067 1547 2.047179 GAGGAATATCCCGCCGCC 60.047 66.667 0.00 0.00 37.19 6.13
1068 1548 3.934391 GAGGAATATCCCGCCGCCG 62.934 68.421 0.00 0.00 37.19 6.46
1151 1640 1.074775 TAAGGTATGCCGCCTCCCT 60.075 57.895 0.00 0.00 40.50 4.20
1152 1641 1.407656 TAAGGTATGCCGCCTCCCTG 61.408 60.000 0.00 0.00 40.50 4.45
1153 1642 4.937431 GGTATGCCGCCTCCCTGC 62.937 72.222 0.00 0.00 0.00 4.85
1154 1643 4.937431 GTATGCCGCCTCCCTGCC 62.937 72.222 0.00 0.00 0.00 4.85
1196 1696 0.958382 TTTCTTGATTGGACGGCCGG 60.958 55.000 31.76 11.88 36.79 6.13
1226 1726 3.822192 GGGCGGCGTCATTTTCCC 61.822 66.667 15.59 7.36 0.00 3.97
1244 1753 2.941025 CAGGTGGGGGATGTGGGT 60.941 66.667 0.00 0.00 0.00 4.51
1264 1773 1.270252 TGTGCTCGTTCTTGATCTGCA 60.270 47.619 0.00 0.00 0.00 4.41
1267 1776 1.005340 CTCGTTCTTGATCTGCAGCC 58.995 55.000 9.47 3.77 0.00 4.85
1270 1779 1.377536 GTTCTTGATCTGCAGCCTCC 58.622 55.000 9.47 0.00 0.00 4.30
1274 1783 4.521062 GATCTGCAGCCTCCGCGT 62.521 66.667 9.47 0.00 41.18 6.01
1442 1952 4.023291 TGTGGATGTCATGCTAGTCTGTA 58.977 43.478 5.87 0.00 0.00 2.74
1444 1954 4.987285 GTGGATGTCATGCTAGTCTGTATG 59.013 45.833 5.87 0.00 0.00 2.39
1451 1961 6.134730 GTCATGCTAGTCTGTATGTACGTAC 58.865 44.000 18.90 18.90 32.97 3.67
1538 2048 4.840005 CCGCCCGCTTCTCCCTTC 62.840 72.222 0.00 0.00 0.00 3.46
1652 2166 1.620818 CTCCCCCTTTCCATTCCCC 59.379 63.158 0.00 0.00 0.00 4.81
1653 2167 1.939132 TCCCCCTTTCCATTCCCCC 60.939 63.158 0.00 0.00 0.00 5.40
1654 2168 1.941281 CCCCCTTTCCATTCCCCCT 60.941 63.158 0.00 0.00 0.00 4.79
1662 2177 2.770048 CATTCCCCCTCCTCGCCT 60.770 66.667 0.00 0.00 0.00 5.52
1733 2248 1.101635 GCCCACTCCGCCCTATTTTC 61.102 60.000 0.00 0.00 0.00 2.29
1754 2269 2.588439 GGAGATGCTGCTGGCTCA 59.412 61.111 15.10 0.00 42.39 4.26
1755 2270 1.148723 GGAGATGCTGCTGGCTCAT 59.851 57.895 15.10 0.00 42.39 2.90
1825 2349 2.242196 CCTCTCTCCTCTCTTCACCTCT 59.758 54.545 0.00 0.00 0.00 3.69
2067 2841 5.202765 TCTGTCGATATTTACCTGGTGGTA 58.797 41.667 10.23 0.00 46.43 3.25
2139 2913 6.394025 TGCGAACAAACCCTAGTTATTTTT 57.606 33.333 0.00 0.00 34.19 1.94
2162 2936 1.272781 GTGTGCTGATACGCTGTCTC 58.727 55.000 0.00 0.00 0.00 3.36
2163 2937 0.173481 TGTGCTGATACGCTGTCTCC 59.827 55.000 0.00 0.00 0.00 3.71
2166 2940 1.433471 CTGATACGCTGTCTCCGCA 59.567 57.895 0.00 0.00 0.00 5.69
2243 3023 0.942410 GAGCACTGACACGGCGTTTA 60.942 55.000 11.19 0.00 0.00 2.01
2286 3066 2.238521 GCCCAGTTCATGTCTTCCAAA 58.761 47.619 0.00 0.00 0.00 3.28
2493 3273 0.179936 CCCCAGAGGCAGAATCTGAC 59.820 60.000 15.38 12.01 45.80 3.51
2576 3356 7.168972 GCAAAAGAGTAGTATCAGTGATAGCTG 59.831 40.741 13.24 3.17 37.81 4.24
2640 3420 1.544691 ACCAGTGGTAGTGCTAAGACG 59.455 52.381 14.87 0.00 32.11 4.18
2703 3483 0.305922 GTGTGAGTGCAAGCAGTGAC 59.694 55.000 11.74 11.74 34.76 3.67
2771 3551 2.083167 CCGCACAAAGGCAATGATTT 57.917 45.000 0.00 0.00 0.00 2.17
2865 3645 5.520748 AGAAACTGGGTTCTGGTGATATT 57.479 39.130 0.00 0.00 36.48 1.28
3166 3953 5.973651 TGCACTTTCTCTCGCTAATTATG 57.026 39.130 0.00 0.00 0.00 1.90
3167 3954 4.271049 TGCACTTTCTCTCGCTAATTATGC 59.729 41.667 0.00 0.00 0.00 3.14
3168 3955 4.271049 GCACTTTCTCTCGCTAATTATGCA 59.729 41.667 0.00 0.00 0.00 3.96
3171 3958 6.849811 CACTTTCTCTCGCTAATTATGCATTG 59.150 38.462 3.54 0.00 0.00 2.82
3175 3962 5.463392 TCTCTCGCTAATTATGCATTGACAC 59.537 40.000 3.54 0.00 0.00 3.67
3176 3963 5.115480 TCTCGCTAATTATGCATTGACACA 58.885 37.500 3.54 0.00 0.00 3.72
3251 4047 5.184711 TGCATTTCATTATTTTTGGGCCTC 58.815 37.500 4.53 0.00 0.00 4.70
3255 4051 7.498570 GCATTTCATTATTTTTGGGCCTCATAA 59.501 33.333 4.53 2.57 0.00 1.90
3262 4058 8.830915 TTATTTTTGGGCCTCATAACTTCATA 57.169 30.769 4.53 0.00 0.00 2.15
3293 4089 5.363101 AGTCAGGTTGCATATGACATACTG 58.637 41.667 21.48 13.63 44.59 2.74
3294 4090 5.104776 AGTCAGGTTGCATATGACATACTGT 60.105 40.000 21.48 4.41 44.59 3.55
3296 4092 6.201044 GTCAGGTTGCATATGACATACTGTAC 59.799 42.308 17.03 10.51 42.30 2.90
3298 4094 6.763135 CAGGTTGCATATGACATACTGTACTT 59.237 38.462 6.97 0.00 0.00 2.24
3299 4095 7.926018 CAGGTTGCATATGACATACTGTACTTA 59.074 37.037 6.97 0.00 0.00 2.24
3300 4096 8.144478 AGGTTGCATATGACATACTGTACTTAG 58.856 37.037 6.97 0.00 0.00 2.18
3301 4097 7.926555 GGTTGCATATGACATACTGTACTTAGT 59.073 37.037 6.97 0.00 34.71 2.24
3351 4147 9.784531 ATGTTTATTATCCACACTAGAATCAGG 57.215 33.333 0.00 0.00 0.00 3.86
3376 4172 4.997395 AGGTGCAGTATGTTGTAGAAACTG 59.003 41.667 0.00 0.00 40.38 3.16
3396 4192 2.149578 GATGTGTCCCATGCTGATAGC 58.850 52.381 0.00 0.00 42.82 2.97
3399 4195 1.068588 GTGTCCCATGCTGATAGCGTA 59.931 52.381 0.00 0.00 46.26 4.42
3400 4196 1.068588 TGTCCCATGCTGATAGCGTAC 59.931 52.381 0.00 0.00 46.26 3.67
3402 4198 1.341209 TCCCATGCTGATAGCGTACAG 59.659 52.381 0.00 0.00 46.26 2.74
3404 4200 2.483714 CCCATGCTGATAGCGTACAGTT 60.484 50.000 0.00 0.00 46.26 3.16
3405 4201 3.243737 CCCATGCTGATAGCGTACAGTTA 60.244 47.826 0.00 0.00 46.26 2.24
3406 4202 4.560128 CCATGCTGATAGCGTACAGTTAT 58.440 43.478 0.00 0.00 46.26 1.89
3407 4203 4.386954 CCATGCTGATAGCGTACAGTTATG 59.613 45.833 0.00 0.00 46.26 1.90
3408 4204 3.381045 TGCTGATAGCGTACAGTTATGC 58.619 45.455 0.00 0.00 46.26 3.14
3409 4205 3.181480 TGCTGATAGCGTACAGTTATGCA 60.181 43.478 0.00 0.00 46.26 3.96
3411 4207 4.449068 GCTGATAGCGTACAGTTATGCATT 59.551 41.667 3.54 0.00 42.03 3.56
3413 4209 4.988540 TGATAGCGTACAGTTATGCATTCC 59.011 41.667 3.54 0.00 42.03 3.01
3414 4210 3.543680 AGCGTACAGTTATGCATTCCT 57.456 42.857 3.54 0.00 42.03 3.36
3416 4212 5.215252 AGCGTACAGTTATGCATTCCTAT 57.785 39.130 3.54 0.00 42.03 2.57
3417 4213 4.991056 AGCGTACAGTTATGCATTCCTATG 59.009 41.667 3.54 0.00 42.03 2.23
3418 4214 4.988540 GCGTACAGTTATGCATTCCTATGA 59.011 41.667 3.54 0.00 39.68 2.15
3419 4215 5.639506 GCGTACAGTTATGCATTCCTATGAT 59.360 40.000 3.54 0.00 39.68 2.45
3421 4217 7.009631 GCGTACAGTTATGCATTCCTATGATAG 59.990 40.741 3.54 0.00 39.68 2.08
3423 4219 5.871524 ACAGTTATGCATTCCTATGATAGCG 59.128 40.000 3.54 0.00 33.37 4.26
3425 4221 7.035612 CAGTTATGCATTCCTATGATAGCGTA 58.964 38.462 3.54 0.00 33.37 4.42
3426 4222 7.009631 CAGTTATGCATTCCTATGATAGCGTAC 59.990 40.741 3.54 0.00 33.37 3.67
3427 4223 4.864704 TGCATTCCTATGATAGCGTACA 57.135 40.909 0.00 0.00 33.37 2.90
3428 4224 4.809673 TGCATTCCTATGATAGCGTACAG 58.190 43.478 0.00 0.00 33.37 2.74
3429 4225 4.280929 TGCATTCCTATGATAGCGTACAGT 59.719 41.667 0.00 0.00 33.37 3.55
3430 4226 5.221441 TGCATTCCTATGATAGCGTACAGTT 60.221 40.000 0.00 0.00 33.37 3.16
3431 4227 6.015772 TGCATTCCTATGATAGCGTACAGTTA 60.016 38.462 0.00 0.00 33.37 2.24
3432 4228 7.036220 GCATTCCTATGATAGCGTACAGTTAT 58.964 38.462 0.00 0.00 33.37 1.89
3433 4229 7.009631 GCATTCCTATGATAGCGTACAGTTATG 59.990 40.741 0.00 0.00 33.37 1.90
3434 4230 5.950883 TCCTATGATAGCGTACAGTTATGC 58.049 41.667 0.00 0.00 40.14 3.14
3435 4231 4.793731 CCTATGATAGCGTACAGTTATGCG 59.206 45.833 0.00 0.00 43.97 4.73
3436 4232 3.703286 TGATAGCGTACAGTTATGCGT 57.297 42.857 0.00 0.00 43.97 5.24
3437 4233 4.036567 TGATAGCGTACAGTTATGCGTT 57.963 40.909 0.00 0.00 43.97 4.84
3438 4234 3.794564 TGATAGCGTACAGTTATGCGTTG 59.205 43.478 0.00 0.00 43.97 4.10
3439 4235 2.074547 AGCGTACAGTTATGCGTTGT 57.925 45.000 0.00 0.00 43.97 3.32
3440 4236 2.409975 AGCGTACAGTTATGCGTTGTT 58.590 42.857 0.00 0.00 43.97 2.83
3441 4237 2.156891 AGCGTACAGTTATGCGTTGTTG 59.843 45.455 0.00 0.00 43.97 3.33
3442 4238 2.723618 GCGTACAGTTATGCGTTGTTGG 60.724 50.000 0.00 0.00 30.53 3.77
3443 4239 2.159761 CGTACAGTTATGCGTTGTTGGG 60.160 50.000 0.00 0.00 0.00 4.12
3444 4240 1.975660 ACAGTTATGCGTTGTTGGGT 58.024 45.000 0.00 0.00 0.00 4.51
3445 4241 2.303175 ACAGTTATGCGTTGTTGGGTT 58.697 42.857 0.00 0.00 0.00 4.11
3446 4242 2.691011 ACAGTTATGCGTTGTTGGGTTT 59.309 40.909 0.00 0.00 0.00 3.27
3447 4243 3.243267 ACAGTTATGCGTTGTTGGGTTTC 60.243 43.478 0.00 0.00 0.00 2.78
3448 4244 2.952978 AGTTATGCGTTGTTGGGTTTCA 59.047 40.909 0.00 0.00 0.00 2.69
3449 4245 3.572255 AGTTATGCGTTGTTGGGTTTCAT 59.428 39.130 0.00 0.00 0.00 2.57
3450 4246 2.437200 ATGCGTTGTTGGGTTTCATG 57.563 45.000 0.00 0.00 0.00 3.07
3451 4247 0.249238 TGCGTTGTTGGGTTTCATGC 60.249 50.000 0.00 0.00 0.00 4.06
3452 4248 1.274798 GCGTTGTTGGGTTTCATGCG 61.275 55.000 0.00 0.00 0.00 4.73
3453 4249 0.030101 CGTTGTTGGGTTTCATGCGT 59.970 50.000 0.00 0.00 0.00 5.24
3454 4250 1.535015 CGTTGTTGGGTTTCATGCGTT 60.535 47.619 0.00 0.00 0.00 4.84
3455 4251 2.124122 GTTGTTGGGTTTCATGCGTTC 58.876 47.619 0.00 0.00 0.00 3.95
3456 4252 1.686355 TGTTGGGTTTCATGCGTTCT 58.314 45.000 0.00 0.00 0.00 3.01
3457 4253 1.336440 TGTTGGGTTTCATGCGTTCTG 59.664 47.619 0.00 0.00 0.00 3.02
3458 4254 1.606668 GTTGGGTTTCATGCGTTCTGA 59.393 47.619 0.00 0.00 0.00 3.27
3459 4255 2.198827 TGGGTTTCATGCGTTCTGAT 57.801 45.000 0.00 0.00 0.00 2.90
3460 4256 3.342377 TGGGTTTCATGCGTTCTGATA 57.658 42.857 0.00 0.00 0.00 2.15
3461 4257 3.270027 TGGGTTTCATGCGTTCTGATAG 58.730 45.455 0.00 0.00 0.00 2.08
3462 4258 2.614057 GGGTTTCATGCGTTCTGATAGG 59.386 50.000 0.00 0.00 0.00 2.57
3463 4259 3.270877 GGTTTCATGCGTTCTGATAGGT 58.729 45.455 0.00 0.00 0.00 3.08
3464 4260 3.063997 GGTTTCATGCGTTCTGATAGGTG 59.936 47.826 0.00 0.00 0.00 4.00
3465 4261 3.610040 TTCATGCGTTCTGATAGGTGT 57.390 42.857 0.00 0.00 0.00 4.16
3466 4262 4.729227 TTCATGCGTTCTGATAGGTGTA 57.271 40.909 0.00 0.00 0.00 2.90
3467 4263 4.937201 TCATGCGTTCTGATAGGTGTAT 57.063 40.909 0.00 0.00 0.00 2.29
3468 4264 4.620982 TCATGCGTTCTGATAGGTGTATG 58.379 43.478 0.00 0.00 0.00 2.39
3469 4265 4.099419 TCATGCGTTCTGATAGGTGTATGT 59.901 41.667 0.00 0.00 0.00 2.29
3470 4266 4.465632 TGCGTTCTGATAGGTGTATGTT 57.534 40.909 0.00 0.00 0.00 2.71
3471 4267 4.827692 TGCGTTCTGATAGGTGTATGTTT 58.172 39.130 0.00 0.00 0.00 2.83
3472 4268 5.242434 TGCGTTCTGATAGGTGTATGTTTT 58.758 37.500 0.00 0.00 0.00 2.43
3473 4269 5.703592 TGCGTTCTGATAGGTGTATGTTTTT 59.296 36.000 0.00 0.00 0.00 1.94
3497 4293 4.895297 TGGGGAGATTTTGATTTGCCTATC 59.105 41.667 0.00 0.00 0.00 2.08
3508 4304 0.804364 TTGCCTATCAAAGCTGTGCG 59.196 50.000 0.00 0.00 0.00 5.34
3517 4313 1.174712 AAAGCTGTGCGGAATGCTGT 61.175 50.000 5.75 0.00 46.63 4.40
3522 4318 1.200716 CTGTGCGGAATGCTGTCAAAT 59.799 47.619 0.00 0.00 46.63 2.32
3559 4355 5.284079 TGTTTTGCTTTCTCTCTTTGATGC 58.716 37.500 0.00 0.00 0.00 3.91
3652 4448 4.104383 TCTCAAGCCAGAAAATGTCCTT 57.896 40.909 0.00 0.00 0.00 3.36
3655 4451 3.569701 TCAAGCCAGAAAATGTCCTTGTC 59.430 43.478 0.00 0.00 37.50 3.18
3925 4721 3.267551 TGAACCAGGTTAACCTATTCCCC 59.732 47.826 30.23 18.74 46.65 4.81
3946 4742 2.203070 ATGATCGCCGAGCCAACC 60.203 61.111 0.00 0.00 0.00 3.77
4072 4868 6.255887 GCATATTCTTGTACGAGCTACTGTTT 59.744 38.462 5.12 0.00 0.00 2.83
4292 5088 0.462047 CGTGAACTGGGCCCTGATAC 60.462 60.000 33.43 24.13 0.00 2.24
4420 5216 3.181498 GCTCGGACAACTACCTAGAGTTC 60.181 52.174 0.00 0.00 37.57 3.01
4442 5238 4.396790 TCGAGTTCTTCTAGCCTCTCTTTC 59.603 45.833 0.00 0.00 0.00 2.62
4449 5245 0.895530 TAGCCTCTCTTTCGTGGTGG 59.104 55.000 0.00 0.00 0.00 4.61
4451 5247 0.670854 GCCTCTCTTTCGTGGTGGAC 60.671 60.000 0.00 0.00 0.00 4.02
4519 5317 7.063308 CACAGAAAGAGAAAAGATGTAGAGCTC 59.937 40.741 5.27 5.27 0.00 4.09
4565 5363 8.870879 GGTACTCTCATTTGTTGTAGATTGTAC 58.129 37.037 0.00 0.00 0.00 2.90
4603 5401 4.075682 CTCCTCCCCAAGTTTTTCTTCTC 58.924 47.826 0.00 0.00 33.63 2.87
4610 5408 5.010112 CCCCAAGTTTTTCTTCTCTCCTTTC 59.990 44.000 0.00 0.00 33.63 2.62
4660 5458 6.704050 GCCCTCTCTCTTAGTCAATCAAATAC 59.296 42.308 0.00 0.00 0.00 1.89
4661 5459 7.418483 GCCCTCTCTCTTAGTCAATCAAATACT 60.418 40.741 0.00 0.00 0.00 2.12
4692 5490 7.479150 TCTATGCATGTTAATTGCGATTTTCA 58.521 30.769 10.16 5.34 43.10 2.69
4793 5610 1.000171 CTTCATCCATCCATCGCTCGA 60.000 52.381 0.00 0.00 0.00 4.04
4851 5668 5.664457 TGATACCTTCATGCTAACAGACAG 58.336 41.667 0.00 0.00 0.00 3.51
4908 5729 8.701908 ATTCCTGTTGTATGATTATGATTGCT 57.298 30.769 0.00 0.00 0.00 3.91
4921 5742 3.497297 TGATTGCTGATTGTGACATGC 57.503 42.857 0.00 0.00 0.00 4.06
4923 5744 1.237533 TTGCTGATTGTGACATGCGT 58.762 45.000 0.00 0.00 0.00 5.24
4924 5745 0.518195 TGCTGATTGTGACATGCGTG 59.482 50.000 3.82 3.82 0.00 5.34
4925 5746 0.518636 GCTGATTGTGACATGCGTGT 59.481 50.000 12.38 12.38 42.49 4.49
4926 5747 1.069022 GCTGATTGTGACATGCGTGTT 60.069 47.619 13.92 0.00 39.09 3.32
4927 5748 2.605338 GCTGATTGTGACATGCGTGTTT 60.605 45.455 13.92 0.00 39.09 2.83
4928 5749 3.364864 GCTGATTGTGACATGCGTGTTTA 60.365 43.478 13.92 2.83 39.09 2.01
4929 5750 4.397382 CTGATTGTGACATGCGTGTTTAG 58.603 43.478 13.92 0.00 39.09 1.85
4931 5752 2.248280 TGTGACATGCGTGTTTAGGT 57.752 45.000 13.92 0.00 39.09 3.08
4933 5754 3.061322 TGTGACATGCGTGTTTAGGTAC 58.939 45.455 13.92 6.76 39.09 3.34
4934 5755 3.243941 TGTGACATGCGTGTTTAGGTACT 60.244 43.478 13.92 0.00 40.23 2.73
4935 5756 3.367025 GTGACATGCGTGTTTAGGTACTC 59.633 47.826 13.92 0.00 38.31 2.59
4936 5757 2.928116 GACATGCGTGTTTAGGTACTCC 59.072 50.000 13.92 0.00 38.31 3.85
4937 5758 2.277084 CATGCGTGTTTAGGTACTCCC 58.723 52.381 0.00 0.00 41.75 4.30
4938 5759 4.637320 ACATGCGTGTTTAGGTACTCCCT 61.637 47.826 5.51 0.00 40.81 4.20
4939 5760 1.547372 TGCGTGTTTAGGTACTCCCTC 59.453 52.381 0.00 0.00 44.81 4.30
4941 5762 2.416972 GCGTGTTTAGGTACTCCCTCTG 60.417 54.545 0.00 0.00 44.81 3.35
4943 5764 4.012374 CGTGTTTAGGTACTCCCTCTGTA 58.988 47.826 0.00 0.00 44.81 2.74
4944 5765 4.460382 CGTGTTTAGGTACTCCCTCTGTAA 59.540 45.833 0.00 0.00 44.81 2.41
4946 5767 6.396450 GTGTTTAGGTACTCCCTCTGTAAAG 58.604 44.000 0.00 0.00 44.81 1.85
4947 5768 6.210185 GTGTTTAGGTACTCCCTCTGTAAAGA 59.790 42.308 0.00 0.00 44.81 2.52
4948 5769 6.783977 TGTTTAGGTACTCCCTCTGTAAAGAA 59.216 38.462 0.00 0.00 44.81 2.52
4949 5770 7.456902 TGTTTAGGTACTCCCTCTGTAAAGAAT 59.543 37.037 0.00 0.00 44.81 2.40
4950 5771 8.975295 GTTTAGGTACTCCCTCTGTAAAGAATA 58.025 37.037 0.00 0.00 44.81 1.75
4951 5772 8.530804 TTAGGTACTCCCTCTGTAAAGAATAC 57.469 38.462 0.00 0.00 44.81 1.89
4952 5773 5.898397 AGGTACTCCCTCTGTAAAGAATACC 59.102 44.000 0.00 0.00 40.71 2.73
4953 5774 5.898397 GGTACTCCCTCTGTAAAGAATACCT 59.102 44.000 0.00 0.00 0.00 3.08
5006 6002 8.475331 AAGAGTGGTTTATACATACTTTCACG 57.525 34.615 0.00 0.00 0.00 4.35
5007 6003 7.609056 AGAGTGGTTTATACATACTTTCACGT 58.391 34.615 0.00 0.00 0.00 4.49
5012 6008 7.820386 TGGTTTATACATACTTTCACGTCATGT 59.180 33.333 0.00 0.00 34.40 3.21
5017 6013 6.020971 ACATACTTTCACGTCATGTACTCA 57.979 37.500 0.00 0.00 0.00 3.41
5018 6014 5.862323 ACATACTTTCACGTCATGTACTCAC 59.138 40.000 0.00 0.00 0.00 3.51
5019 6015 4.585955 ACTTTCACGTCATGTACTCACT 57.414 40.909 0.00 0.00 0.00 3.41
5020 6016 4.547532 ACTTTCACGTCATGTACTCACTC 58.452 43.478 0.00 0.00 0.00 3.51
5021 6017 2.894307 TCACGTCATGTACTCACTCG 57.106 50.000 0.00 0.00 0.00 4.18
5022 6018 1.467342 TCACGTCATGTACTCACTCGG 59.533 52.381 0.00 0.00 0.00 4.63
5024 6020 2.417586 CACGTCATGTACTCACTCGGTA 59.582 50.000 0.00 0.00 0.00 4.02
5025 6021 3.076621 ACGTCATGTACTCACTCGGTAA 58.923 45.455 0.00 0.00 0.00 2.85
5026 6022 3.120060 ACGTCATGTACTCACTCGGTAAC 60.120 47.826 0.00 0.00 0.00 2.50
5028 6024 4.438336 CGTCATGTACTCACTCGGTAACAT 60.438 45.833 0.00 0.00 0.00 2.71
5029 6025 5.220719 CGTCATGTACTCACTCGGTAACATA 60.221 44.000 0.00 0.00 0.00 2.29
5030 6026 6.558009 GTCATGTACTCACTCGGTAACATAA 58.442 40.000 0.00 0.00 0.00 1.90
5031 6027 7.201145 GTCATGTACTCACTCGGTAACATAAT 58.799 38.462 0.00 0.00 0.00 1.28
5039 6035 8.288208 ACTCACTCGGTAACATAATATTAGACG 58.712 37.037 1.02 0.41 0.00 4.18
5040 6036 8.158169 TCACTCGGTAACATAATATTAGACGT 57.842 34.615 1.02 0.00 0.00 4.34
5041 6037 8.623903 TCACTCGGTAACATAATATTAGACGTT 58.376 33.333 1.02 7.03 0.00 3.99
5043 6039 9.807649 ACTCGGTAACATAATATTAGACGTTTT 57.192 29.630 11.00 0.00 0.00 2.43
5046 6042 9.558891 CGGTAACATAATATTAGACGTTTTTCG 57.441 33.333 11.00 9.48 46.00 3.46
5050 6046 9.962759 AACATAATATTAGACGTTTTTCGACAC 57.037 29.630 1.02 0.00 42.86 3.67
5051 6047 9.362539 ACATAATATTAGACGTTTTTCGACACT 57.637 29.630 1.02 0.00 42.86 3.55
5058 6054 8.746922 TTAGACGTTTTTCGACACTATTATGT 57.253 30.769 0.00 0.00 42.86 2.29
5059 6055 7.647907 AGACGTTTTTCGACACTATTATGTT 57.352 32.000 0.00 0.00 42.86 2.71
5060 6056 8.746922 AGACGTTTTTCGACACTATTATGTTA 57.253 30.769 0.00 0.00 42.86 2.41
5061 6057 9.362539 AGACGTTTTTCGACACTATTATGTTAT 57.637 29.630 0.00 0.00 42.86 1.89
5062 6058 9.405083 GACGTTTTTCGACACTATTATGTTATG 57.595 33.333 0.00 0.00 42.86 1.90
5063 6059 8.385111 ACGTTTTTCGACACTATTATGTTATGG 58.615 33.333 0.00 0.00 42.86 2.74
5064 6060 8.597227 CGTTTTTCGACACTATTATGTTATGGA 58.403 33.333 0.00 0.00 42.86 3.41
5065 6061 9.916397 GTTTTTCGACACTATTATGTTATGGAG 57.084 33.333 0.00 0.00 31.24 3.86
5066 6062 9.661563 TTTTTCGACACTATTATGTTATGGAGT 57.338 29.630 0.00 0.00 31.24 3.85
5067 6063 8.642908 TTTCGACACTATTATGTTATGGAGTG 57.357 34.615 0.00 0.00 40.09 3.51
5068 6064 7.576861 TCGACACTATTATGTTATGGAGTGA 57.423 36.000 6.83 0.00 38.12 3.41
5069 6065 8.178313 TCGACACTATTATGTTATGGAGTGAT 57.822 34.615 6.83 0.00 38.12 3.06
5070 6066 9.292195 TCGACACTATTATGTTATGGAGTGATA 57.708 33.333 6.83 0.00 38.12 2.15
5091 6087 7.176865 GTGATATGTAAGTATGCTACTCCCTCA 59.823 40.741 0.00 0.00 38.26 3.86
5095 6091 2.952116 AGTATGCTACTCCCTCAGTCC 58.048 52.381 0.00 0.00 36.43 3.85
5097 6093 0.339859 ATGCTACTCCCTCAGTCCCA 59.660 55.000 0.00 0.00 36.43 4.37
5114 6110 5.182001 CAGTCCCAAAAATAACTGTCTCTGG 59.818 44.000 0.00 0.00 35.51 3.86
5121 6117 8.076178 CCAAAAATAACTGTCTCTGGTTTAGTG 58.924 37.037 0.00 0.00 0.00 2.74
5142 6201 4.746611 GTGCAACTTTGAGAGGAATTTTGG 59.253 41.667 0.00 0.00 0.00 3.28
5146 6205 6.316140 GCAACTTTGAGAGGAATTTTGGTTTT 59.684 34.615 0.00 0.00 0.00 2.43
5154 6213 5.600069 AGAGGAATTTTGGTTTTCTTCAGCT 59.400 36.000 0.00 0.00 32.19 4.24
5183 6246 1.304282 CATGGGTCTTGGGTCCAGG 59.696 63.158 0.00 0.00 33.68 4.45
5288 6360 4.962362 ACTCAAGTCAGTTTGGGGATTTTT 59.038 37.500 0.00 0.00 32.71 1.94
5289 6361 6.040391 CACTCAAGTCAGTTTGGGGATTTTTA 59.960 38.462 0.00 0.00 32.71 1.52
5295 6367 2.565391 AGTTTGGGGATTTTTAAGGCGG 59.435 45.455 0.00 0.00 0.00 6.13
5304 6376 0.468400 TTTTAAGGCGGTTGGGTGCT 60.468 50.000 0.00 0.00 0.00 4.40
5307 6379 1.196104 TAAGGCGGTTGGGTGCTACT 61.196 55.000 0.00 0.00 0.00 2.57
5308 6380 2.033602 GGCGGTTGGGTGCTACTT 59.966 61.111 0.00 0.00 0.00 2.24
5309 6381 2.038837 GGCGGTTGGGTGCTACTTC 61.039 63.158 0.00 0.00 0.00 3.01
5310 6382 2.038837 GCGGTTGGGTGCTACTTCC 61.039 63.158 0.00 0.00 0.00 3.46
5313 6385 0.035343 GGTTGGGTGCTACTTCCTCC 60.035 60.000 0.00 0.00 0.00 4.30
5314 6386 0.391263 GTTGGGTGCTACTTCCTCCG 60.391 60.000 0.00 0.00 0.00 4.63
5315 6387 0.834687 TTGGGTGCTACTTCCTCCGT 60.835 55.000 0.00 0.00 0.00 4.69
5318 6390 0.456628 GGTGCTACTTCCTCCGTCTC 59.543 60.000 0.00 0.00 0.00 3.36
5319 6391 1.174783 GTGCTACTTCCTCCGTCTCA 58.825 55.000 0.00 0.00 0.00 3.27
5322 6394 2.631062 TGCTACTTCCTCCGTCTCAAAA 59.369 45.455 0.00 0.00 0.00 2.44
5324 6396 4.464951 TGCTACTTCCTCCGTCTCAAAATA 59.535 41.667 0.00 0.00 0.00 1.40
5325 6397 5.044558 GCTACTTCCTCCGTCTCAAAATAG 58.955 45.833 0.00 0.00 0.00 1.73
5326 6398 5.163540 GCTACTTCCTCCGTCTCAAAATAGA 60.164 44.000 0.00 0.00 0.00 1.98
5328 6400 5.665459 ACTTCCTCCGTCTCAAAATAGATG 58.335 41.667 0.00 0.00 33.12 2.90
5333 6405 3.797039 CCGTCTCAAAATAGATGGCTCA 58.203 45.455 0.00 0.00 43.83 4.26
5334 6406 4.191544 CCGTCTCAAAATAGATGGCTCAA 58.808 43.478 0.00 0.00 43.83 3.02
5336 6408 4.872691 CGTCTCAAAATAGATGGCTCAACT 59.127 41.667 0.00 0.00 0.00 3.16
5337 6409 5.352569 CGTCTCAAAATAGATGGCTCAACTT 59.647 40.000 0.00 0.00 0.00 2.66
5338 6410 6.128172 CGTCTCAAAATAGATGGCTCAACTTT 60.128 38.462 0.00 0.00 0.00 2.66
5339 6411 7.064609 CGTCTCAAAATAGATGGCTCAACTTTA 59.935 37.037 0.00 0.00 0.00 1.85
5340 6412 8.897752 GTCTCAAAATAGATGGCTCAACTTTAT 58.102 33.333 0.00 0.00 0.00 1.40
5385 6490 5.520748 ACCTTTCAGTAGGGAAACATCAT 57.479 39.130 0.00 0.00 39.76 2.45
5404 6509 3.574396 TCATCCTCAAAGACGAGTCAAGT 59.426 43.478 5.99 0.00 0.00 3.16
5412 6517 0.387929 GACGAGTCAAGTCACCACCA 59.612 55.000 0.00 0.00 38.42 4.17
5435 6540 2.939103 CCGTTGAGGAAGGCTATTTCTG 59.061 50.000 0.00 0.00 45.00 3.02
5444 6577 1.352352 AGGCTATTTCTGGCAGTGTGT 59.648 47.619 15.27 2.26 0.00 3.72
5457 6590 2.632377 CAGTGTGTGACTCACCAAAGT 58.368 47.619 13.50 0.00 45.61 2.66
5459 6592 1.064060 GTGTGTGACTCACCAAAGTGC 59.936 52.381 6.52 0.00 45.61 4.40
5462 6595 1.014352 GTGACTCACCAAAGTGCGTT 58.986 50.000 0.00 0.00 41.91 4.84
5465 6598 3.064207 TGACTCACCAAAGTGCGTTATC 58.936 45.455 0.00 0.00 41.91 1.75
5479 6612 3.040147 CGTTATCGCCCAAGATGGTAT 57.960 47.619 0.00 0.00 35.17 2.73
5480 6613 2.993899 CGTTATCGCCCAAGATGGTATC 59.006 50.000 0.00 0.00 35.17 2.24
5481 6614 2.993899 GTTATCGCCCAAGATGGTATCG 59.006 50.000 0.00 0.00 35.17 2.92
5483 6616 1.046472 TCGCCCAAGATGGTATCGGT 61.046 55.000 0.00 0.00 35.17 4.69
5484 6617 0.880278 CGCCCAAGATGGTATCGGTG 60.880 60.000 0.00 0.00 35.17 4.94
5487 6620 0.535102 CCAAGATGGTATCGGTGGGC 60.535 60.000 0.00 0.00 36.37 5.36
5489 6622 0.759346 AAGATGGTATCGGTGGGCTC 59.241 55.000 0.00 0.00 0.00 4.70
5491 6624 1.383943 ATGGTATCGGTGGGCTCCA 60.384 57.895 0.00 0.00 0.00 3.86
5492 6625 0.768221 ATGGTATCGGTGGGCTCCAT 60.768 55.000 0.00 0.00 35.28 3.41
5493 6626 0.105401 TGGTATCGGTGGGCTCCATA 60.105 55.000 0.00 0.00 35.28 2.74
5494 6627 0.320697 GGTATCGGTGGGCTCCATAC 59.679 60.000 0.00 0.00 35.28 2.39
5496 6629 0.178984 TATCGGTGGGCTCCATACGA 60.179 55.000 18.61 18.61 44.76 3.43
5501 6634 0.733150 GTGGGCTCCATACGAAAAGC 59.267 55.000 0.00 0.00 35.28 3.51
5505 6638 2.084546 GGCTCCATACGAAAAGCTGTT 58.915 47.619 0.00 0.00 35.12 3.16
5507 6640 3.877508 GGCTCCATACGAAAAGCTGTTAT 59.122 43.478 0.00 0.00 35.12 1.89
5560 6693 5.221130 AGAGTTGTTCTAGTAAAGCGTGTC 58.779 41.667 0.00 0.00 33.23 3.67
5577 6710 1.215382 TCGTCGCCCAAGATGACAG 59.785 57.895 0.00 0.00 31.79 3.51
5578 6711 1.811266 CGTCGCCCAAGATGACAGG 60.811 63.158 0.00 0.00 32.91 4.00
5579 6712 1.596934 GTCGCCCAAGATGACAGGA 59.403 57.895 0.00 0.00 32.91 3.86
5580 6713 0.460987 GTCGCCCAAGATGACAGGAG 60.461 60.000 0.00 0.00 32.91 3.69
5581 6714 1.817099 CGCCCAAGATGACAGGAGC 60.817 63.158 0.00 0.00 0.00 4.70
5582 6715 1.452833 GCCCAAGATGACAGGAGCC 60.453 63.158 0.00 0.00 0.00 4.70
5589 6722 0.615331 GATGACAGGAGCCAGGTTCA 59.385 55.000 5.55 0.00 0.00 3.18
5617 6750 5.833131 TGAAAGAAGTTGTTAGGCCTTCAAT 59.167 36.000 12.58 3.34 37.62 2.57
5657 6790 1.737735 GCCAAAAAGGTGCCGCATC 60.738 57.895 0.00 0.00 40.61 3.91
5703 6836 2.261361 GCCGGTGTCAAATTGGCC 59.739 61.111 1.90 0.00 39.83 5.36
5727 6860 4.798433 GTGCCACATCACCACTGA 57.202 55.556 0.00 0.00 0.00 3.41
5728 6861 3.254629 GTGCCACATCACCACTGAT 57.745 52.632 0.00 0.00 37.65 2.90
5729 6862 2.401583 GTGCCACATCACCACTGATA 57.598 50.000 0.00 0.00 35.17 2.15
5730 6863 2.283298 GTGCCACATCACCACTGATAG 58.717 52.381 0.00 0.00 35.17 2.08
5731 6864 1.303309 GCCACATCACCACTGATAGC 58.697 55.000 0.00 0.00 35.17 2.97
5732 6865 1.959042 CCACATCACCACTGATAGCC 58.041 55.000 0.00 0.00 35.17 3.93
5733 6866 1.210234 CCACATCACCACTGATAGCCA 59.790 52.381 0.00 0.00 35.17 4.75
5734 6867 2.356022 CCACATCACCACTGATAGCCAA 60.356 50.000 0.00 0.00 35.17 4.52
5735 6868 3.346315 CACATCACCACTGATAGCCAAA 58.654 45.455 0.00 0.00 35.17 3.28
5736 6869 3.758023 CACATCACCACTGATAGCCAAAA 59.242 43.478 0.00 0.00 35.17 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.100189 CCTAGTTATGGTACTCTTGCTGCT 59.900 45.833 0.00 0.00 0.00 4.24
1 2 4.099573 TCCTAGTTATGGTACTCTTGCTGC 59.900 45.833 0.00 0.00 0.00 5.25
2 3 5.854010 TCCTAGTTATGGTACTCTTGCTG 57.146 43.478 0.00 0.00 0.00 4.41
3 4 6.266558 CAGATCCTAGTTATGGTACTCTTGCT 59.733 42.308 0.00 0.00 0.00 3.91
4 5 6.451393 CAGATCCTAGTTATGGTACTCTTGC 58.549 44.000 0.00 0.00 0.00 4.01
5 6 6.551601 ACCAGATCCTAGTTATGGTACTCTTG 59.448 42.308 7.30 0.00 42.37 3.02
6 7 6.551601 CACCAGATCCTAGTTATGGTACTCTT 59.448 42.308 8.44 0.00 42.29 2.85
7 8 6.071984 CACCAGATCCTAGTTATGGTACTCT 58.928 44.000 8.44 0.00 42.29 3.24
8 9 6.069331 TCACCAGATCCTAGTTATGGTACTC 58.931 44.000 8.44 0.00 42.29 2.59
9 10 6.027025 TCACCAGATCCTAGTTATGGTACT 57.973 41.667 8.44 0.00 42.29 2.73
10 11 6.726490 TTCACCAGATCCTAGTTATGGTAC 57.274 41.667 8.44 0.00 42.29 3.34
11 12 6.099269 GGTTTCACCAGATCCTAGTTATGGTA 59.901 42.308 8.44 0.00 42.29 3.25
12 13 5.104485 GGTTTCACCAGATCCTAGTTATGGT 60.104 44.000 3.95 3.95 45.00 3.55
13 14 5.131142 AGGTTTCACCAGATCCTAGTTATGG 59.869 44.000 2.84 2.84 41.95 2.74
14 15 6.240549 AGGTTTCACCAGATCCTAGTTATG 57.759 41.667 0.00 0.00 41.95 1.90
15 16 6.893020 AAGGTTTCACCAGATCCTAGTTAT 57.107 37.500 0.00 0.00 41.95 1.89
16 17 6.697641 AAAGGTTTCACCAGATCCTAGTTA 57.302 37.500 0.00 0.00 41.95 2.24
17 18 5.584551 AAAGGTTTCACCAGATCCTAGTT 57.415 39.130 0.00 0.00 41.95 2.24
18 19 5.584551 AAAAGGTTTCACCAGATCCTAGT 57.415 39.130 0.00 0.00 41.95 2.57
19 20 5.416013 GGAAAAAGGTTTCACCAGATCCTAG 59.584 44.000 0.00 0.00 44.29 3.02
20 21 5.074515 AGGAAAAAGGTTTCACCAGATCCTA 59.925 40.000 7.44 0.00 44.29 2.94
21 22 4.140924 AGGAAAAAGGTTTCACCAGATCCT 60.141 41.667 0.00 0.50 44.29 3.24
22 23 4.152647 AGGAAAAAGGTTTCACCAGATCC 58.847 43.478 0.00 0.00 44.29 3.36
23 24 5.279006 GGAAGGAAAAAGGTTTCACCAGATC 60.279 44.000 0.00 0.00 44.29 2.75
24 25 4.588951 GGAAGGAAAAAGGTTTCACCAGAT 59.411 41.667 0.00 0.00 44.29 2.90
25 26 3.958147 GGAAGGAAAAAGGTTTCACCAGA 59.042 43.478 0.00 0.00 44.29 3.86
26 27 3.069586 GGGAAGGAAAAAGGTTTCACCAG 59.930 47.826 0.00 0.00 44.29 4.00
27 28 3.035363 GGGAAGGAAAAAGGTTTCACCA 58.965 45.455 0.00 0.00 44.29 4.17
28 29 3.305720 AGGGAAGGAAAAAGGTTTCACC 58.694 45.455 1.97 2.44 44.29 4.02
29 30 7.450634 ACTTATAGGGAAGGAAAAAGGTTTCAC 59.549 37.037 1.97 0.00 44.29 3.18
30 31 7.450323 CACTTATAGGGAAGGAAAAAGGTTTCA 59.550 37.037 1.97 0.00 44.29 2.69
31 32 7.450634 ACACTTATAGGGAAGGAAAAAGGTTTC 59.549 37.037 0.00 0.00 42.16 2.78
32 33 7.302948 ACACTTATAGGGAAGGAAAAAGGTTT 58.697 34.615 0.00 0.00 0.00 3.27
33 34 6.860034 ACACTTATAGGGAAGGAAAAAGGTT 58.140 36.000 0.00 0.00 0.00 3.50
34 35 6.464530 ACACTTATAGGGAAGGAAAAAGGT 57.535 37.500 0.00 0.00 0.00 3.50
35 36 7.232737 ACAAACACTTATAGGGAAGGAAAAAGG 59.767 37.037 0.00 0.00 0.00 3.11
36 37 8.178313 ACAAACACTTATAGGGAAGGAAAAAG 57.822 34.615 0.00 0.00 0.00 2.27
37 38 8.541899 AACAAACACTTATAGGGAAGGAAAAA 57.458 30.769 0.00 0.00 0.00 1.94
38 39 9.816787 ATAACAAACACTTATAGGGAAGGAAAA 57.183 29.630 0.00 0.00 0.00 2.29
39 40 9.816787 AATAACAAACACTTATAGGGAAGGAAA 57.183 29.630 0.00 0.00 0.00 3.13
40 41 9.457436 GAATAACAAACACTTATAGGGAAGGAA 57.543 33.333 0.00 0.00 0.00 3.36
41 42 8.832735 AGAATAACAAACACTTATAGGGAAGGA 58.167 33.333 0.00 0.00 0.00 3.36
42 43 9.110502 GAGAATAACAAACACTTATAGGGAAGG 57.889 37.037 0.00 0.00 0.00 3.46
43 44 9.110502 GGAGAATAACAAACACTTATAGGGAAG 57.889 37.037 0.00 0.00 0.00 3.46
44 45 7.767198 CGGAGAATAACAAACACTTATAGGGAA 59.233 37.037 0.00 0.00 0.00 3.97
45 46 7.093201 ACGGAGAATAACAAACACTTATAGGGA 60.093 37.037 0.00 0.00 0.00 4.20
46 47 7.046033 ACGGAGAATAACAAACACTTATAGGG 58.954 38.462 0.00 0.00 0.00 3.53
47 48 8.488651 AACGGAGAATAACAAACACTTATAGG 57.511 34.615 0.00 0.00 0.00 2.57
50 51 8.842280 TGAAAACGGAGAATAACAAACACTTAT 58.158 29.630 0.00 0.00 0.00 1.73
66 67 2.875933 TGCCTTAACAGTGAAAACGGAG 59.124 45.455 0.00 0.00 0.00 4.63
67 68 2.614983 GTGCCTTAACAGTGAAAACGGA 59.385 45.455 0.00 0.00 0.00 4.69
71 72 2.312390 GGGGTGCCTTAACAGTGAAAA 58.688 47.619 0.00 0.00 0.00 2.29
101 102 2.736721 TGTTGTAGAGTCAAGCGCATTC 59.263 45.455 11.47 0.00 0.00 2.67
129 313 8.455903 TTGGAATTTAGAGGCATTGATCTAAG 57.544 34.615 10.05 0.00 38.78 2.18
144 328 9.311916 TGAACATGAGTTTGTTTTGGAATTTAG 57.688 29.630 0.00 0.00 39.85 1.85
146 330 8.450180 GTTGAACATGAGTTTGTTTTGGAATTT 58.550 29.630 0.00 0.00 39.85 1.82
164 348 4.325028 AATGTGTGTGCATGTTGAACAT 57.675 36.364 4.72 4.72 38.37 2.71
168 352 2.035704 GGGAAATGTGTGTGCATGTTGA 59.964 45.455 0.00 0.00 0.00 3.18
211 404 2.727392 CCATCCTGGCCGTCCGTTA 61.727 63.158 0.00 0.00 34.14 3.18
230 423 2.532715 ATGGGTGGTGCTGGAGGT 60.533 61.111 0.00 0.00 0.00 3.85
269 467 0.469892 CTTCCCCTGCTTTGTGGGTT 60.470 55.000 0.00 0.00 41.82 4.11
274 472 2.489802 CCTTCTTCTTCCCCTGCTTTGT 60.490 50.000 0.00 0.00 0.00 2.83
399 623 6.134535 TGATGGTGGTGAGTAATTAAACCT 57.865 37.500 12.19 0.00 33.65 3.50
400 624 6.601613 TGATGATGGTGGTGAGTAATTAAACC 59.398 38.462 6.37 6.37 0.00 3.27
401 625 7.624360 TGATGATGGTGGTGAGTAATTAAAC 57.376 36.000 0.00 0.00 0.00 2.01
402 626 8.052141 TGATGATGATGGTGGTGAGTAATTAAA 58.948 33.333 0.00 0.00 0.00 1.52
403 627 7.572814 TGATGATGATGGTGGTGAGTAATTAA 58.427 34.615 0.00 0.00 0.00 1.40
404 628 7.135591 TGATGATGATGGTGGTGAGTAATTA 57.864 36.000 0.00 0.00 0.00 1.40
406 630 5.635278 TGATGATGATGGTGGTGAGTAAT 57.365 39.130 0.00 0.00 0.00 1.89
436 667 2.251642 GCGCATAAACTAGGCCGGG 61.252 63.158 0.30 0.00 30.48 5.73
437 668 2.251642 GGCGCATAAACTAGGCCGG 61.252 63.158 10.83 0.00 33.58 6.13
438 669 2.251642 GGGCGCATAAACTAGGCCG 61.252 63.158 10.83 0.00 44.66 6.13
439 670 1.897137 GGGGCGCATAAACTAGGCC 60.897 63.158 10.83 0.00 46.99 5.19
441 672 1.757682 TTTGGGGCGCATAAACTAGG 58.242 50.000 10.83 0.00 0.00 3.02
511 967 2.459710 GGGGAGAAGGGGAGGGAA 59.540 66.667 0.00 0.00 0.00 3.97
512 968 3.707189 GGGGGAGAAGGGGAGGGA 61.707 72.222 0.00 0.00 0.00 4.20
513 969 4.038804 TGGGGGAGAAGGGGAGGG 62.039 72.222 0.00 0.00 0.00 4.30
514 970 2.692741 GTGGGGGAGAAGGGGAGG 60.693 72.222 0.00 0.00 0.00 4.30
515 971 1.541368 TTGTGGGGGAGAAGGGGAG 60.541 63.158 0.00 0.00 0.00 4.30
516 972 1.541368 CTTGTGGGGGAGAAGGGGA 60.541 63.158 0.00 0.00 0.00 4.81
517 973 3.090765 CTTGTGGGGGAGAAGGGG 58.909 66.667 0.00 0.00 0.00 4.79
518 974 2.356667 GCTTGTGGGGGAGAAGGG 59.643 66.667 0.00 0.00 0.00 3.95
519 975 2.045926 CGCTTGTGGGGGAGAAGG 60.046 66.667 0.00 0.00 0.00 3.46
520 976 2.747855 GCGCTTGTGGGGGAGAAG 60.748 66.667 0.00 0.00 0.00 2.85
521 977 2.829384 AAGCGCTTGTGGGGGAGAA 61.829 57.895 24.40 0.00 0.00 2.87
522 978 3.249189 AAGCGCTTGTGGGGGAGA 61.249 61.111 24.40 0.00 0.00 3.71
523 979 3.058160 CAAGCGCTTGTGGGGGAG 61.058 66.667 36.23 13.28 35.92 4.30
573 1029 4.704833 CTGGGTCAGTGGCCGGTG 62.705 72.222 7.89 0.00 0.00 4.94
595 1051 3.089874 CATCCGGGCAAGGGGAGA 61.090 66.667 0.00 0.00 35.40 3.71
1091 1571 1.539665 GGGTCGAGGGAGAGGAGAT 59.460 63.158 0.00 0.00 0.00 2.75
1196 1696 1.375326 CCGCCCCTAAATCCCTAGC 59.625 63.158 0.00 0.00 0.00 3.42
1226 1726 3.743017 CCCACATCCCCCACCTGG 61.743 72.222 0.00 0.00 0.00 4.45
1239 1748 0.531974 TCAAGAACGAGCACACCCAC 60.532 55.000 0.00 0.00 0.00 4.61
1242 1751 1.728971 CAGATCAAGAACGAGCACACC 59.271 52.381 0.00 0.00 0.00 4.16
1244 1753 1.270252 TGCAGATCAAGAACGAGCACA 60.270 47.619 0.00 0.00 0.00 4.57
1264 1773 2.577593 GGTAAAGACGCGGAGGCT 59.422 61.111 12.47 0.00 42.73 4.58
1336 1846 5.377478 ACGGAAAGAAGAGAGAAAAATGGT 58.623 37.500 0.00 0.00 0.00 3.55
1338 1848 5.626955 GCAACGGAAAGAAGAGAGAAAAATG 59.373 40.000 0.00 0.00 0.00 2.32
1339 1849 5.532779 AGCAACGGAAAGAAGAGAGAAAAAT 59.467 36.000 0.00 0.00 0.00 1.82
1391 1901 4.840005 GGGGCACTACTCCAGCGC 62.840 72.222 0.00 0.00 40.08 5.92
1392 1902 4.162690 GGGGGCACTACTCCAGCG 62.163 72.222 0.00 0.00 0.00 5.18
1442 1952 1.864750 GTGTCGCGCGTACGTACAT 60.865 57.895 30.98 0.00 42.83 2.29
1444 1954 3.233345 GGTGTCGCGCGTACGTAC 61.233 66.667 30.98 20.38 42.83 3.67
1521 2031 4.840005 GAAGGGAGAAGCGGGCGG 62.840 72.222 0.00 0.00 0.00 6.13
1543 2053 3.672503 CCCCCACCTTTCCCCCAG 61.673 72.222 0.00 0.00 0.00 4.45
1652 2166 2.586792 CCCAAAGAGGCGAGGAGG 59.413 66.667 0.00 0.00 35.39 4.30
1653 2167 1.341156 ATCCCCAAAGAGGCGAGGAG 61.341 60.000 0.00 0.00 35.39 3.69
1654 2168 0.031515 TATCCCCAAAGAGGCGAGGA 60.032 55.000 0.00 0.00 35.39 3.71
1662 2177 7.353595 AGGGAATCTTTAAGATATCCCCAAAGA 59.646 37.037 29.85 18.73 44.38 2.52
1733 2248 2.513204 CCAGCAGCATCTCCCACG 60.513 66.667 0.00 0.00 0.00 4.94
1825 2349 1.213013 GCGACGCCAGAGAAGAGAA 59.787 57.895 9.14 0.00 0.00 2.87
1989 2513 6.490381 AGAAAAGAAAGAAATCCCTACACACC 59.510 38.462 0.00 0.00 0.00 4.16
1990 2514 7.363431 CAGAAAAGAAAGAAATCCCTACACAC 58.637 38.462 0.00 0.00 0.00 3.82
2029 2803 5.728351 TCGACAGAAACAACAACCTAAAG 57.272 39.130 0.00 0.00 0.00 1.85
2067 2841 7.673082 GGATCAGAAATATTCCAGGAAATCCAT 59.327 37.037 16.06 0.01 38.89 3.41
2139 2913 1.155889 CAGCGTATCAGCACACCAAA 58.844 50.000 0.00 0.00 40.15 3.28
2166 2940 5.086621 ACCTCCTAACCTGCAAATCAATTT 58.913 37.500 0.00 0.00 0.00 1.82
2234 3014 2.418628 CCAGAATCACAATAAACGCCGT 59.581 45.455 0.00 0.00 0.00 5.68
2235 3015 2.418628 ACCAGAATCACAATAAACGCCG 59.581 45.455 0.00 0.00 0.00 6.46
2243 3023 3.140325 ACGGTTGACCAGAATCACAAT 57.860 42.857 0.51 0.00 35.14 2.71
2286 3066 0.034089 GCATACTTTGGGAGGCAGGT 60.034 55.000 0.00 0.00 0.00 4.00
2364 3144 0.105778 GCTCCCCTGAAATCTCCTCG 59.894 60.000 0.00 0.00 0.00 4.63
2371 3151 2.680370 GGTCCGGCTCCCCTGAAAT 61.680 63.158 0.00 0.00 0.00 2.17
2493 3273 4.372656 AGTTCTTGGTCTCTTTTGACTCG 58.627 43.478 0.00 0.00 37.16 4.18
2576 3356 6.037610 CCCATCACTCACTTTAGCTGAAATAC 59.962 42.308 0.00 0.00 0.00 1.89
2640 3420 1.084370 CGGTGAAATCTCGGCCACTC 61.084 60.000 2.24 0.00 0.00 3.51
2688 3468 1.530293 CTCAAGTCACTGCTTGCACTC 59.470 52.381 0.00 0.00 43.92 3.51
2703 3483 1.135431 CAGGAGCTCTCGTCACTCAAG 60.135 57.143 14.64 0.00 31.88 3.02
2763 3543 1.753073 GCCTCCCACCTCAAATCATTG 59.247 52.381 0.00 0.00 37.92 2.82
2771 3551 2.692368 GGATGGCCTCCCACCTCA 60.692 66.667 3.32 0.00 45.77 3.86
2865 3645 6.211384 TCAATTCAGAGAGATACACACTTCCA 59.789 38.462 0.00 0.00 0.00 3.53
2970 3750 2.017559 GCAGTATCTCCCGCTCGGTT 62.018 60.000 7.59 0.00 0.00 4.44
3156 3936 6.692249 TCATTTGTGTCAATGCATAATTAGCG 59.308 34.615 0.00 0.00 33.85 4.26
3209 3996 4.237724 TGCAGACGAGACACAAGATAAAG 58.762 43.478 0.00 0.00 0.00 1.85
3216 4003 2.832563 TGAAATGCAGACGAGACACAA 58.167 42.857 0.00 0.00 0.00 3.33
3251 4047 7.663081 ACCTGACTATGGCAATATGAAGTTATG 59.337 37.037 0.00 0.00 0.00 1.90
3255 4051 5.636903 ACCTGACTATGGCAATATGAAGT 57.363 39.130 0.00 0.00 0.00 3.01
3262 4058 2.512692 TGCAACCTGACTATGGCAAT 57.487 45.000 0.00 0.00 0.00 3.56
3334 4130 4.163078 CACCTTCCTGATTCTAGTGTGGAT 59.837 45.833 0.00 0.00 0.00 3.41
3336 4132 3.866651 CACCTTCCTGATTCTAGTGTGG 58.133 50.000 0.00 0.00 0.00 4.17
3341 4137 3.902881 ACTGCACCTTCCTGATTCTAG 57.097 47.619 0.00 0.00 0.00 2.43
3351 4147 5.701290 AGTTTCTACAACATACTGCACCTTC 59.299 40.000 0.00 0.00 0.00 3.46
3376 4172 3.439197 CGCTATCAGCATGGGACACATC 61.439 54.545 0.00 0.00 42.58 3.06
3396 4192 7.009631 GCTATCATAGGAATGCATAACTGTACG 59.990 40.741 0.00 0.00 32.76 3.67
3399 4195 5.871524 CGCTATCATAGGAATGCATAACTGT 59.128 40.000 0.00 0.00 32.76 3.55
3400 4196 5.871524 ACGCTATCATAGGAATGCATAACTG 59.128 40.000 0.00 0.00 32.76 3.16
3402 4198 6.811665 TGTACGCTATCATAGGAATGCATAAC 59.188 38.462 0.00 0.00 32.76 1.89
3404 4200 6.152831 ACTGTACGCTATCATAGGAATGCATA 59.847 38.462 0.00 0.00 32.76 3.14
3405 4201 5.047021 ACTGTACGCTATCATAGGAATGCAT 60.047 40.000 0.00 0.00 32.76 3.96
3406 4202 4.280929 ACTGTACGCTATCATAGGAATGCA 59.719 41.667 0.00 0.00 32.76 3.96
3407 4203 4.810790 ACTGTACGCTATCATAGGAATGC 58.189 43.478 0.00 0.00 32.76 3.56
3408 4204 7.009631 GCATAACTGTACGCTATCATAGGAATG 59.990 40.741 0.00 0.00 0.00 2.67
3409 4205 7.036220 GCATAACTGTACGCTATCATAGGAAT 58.964 38.462 0.00 0.00 0.00 3.01
3411 4207 5.391629 CGCATAACTGTACGCTATCATAGGA 60.392 44.000 0.00 0.00 0.00 2.94
3413 4209 5.391449 ACGCATAACTGTACGCTATCATAG 58.609 41.667 0.00 0.00 0.00 2.23
3414 4210 5.366829 ACGCATAACTGTACGCTATCATA 57.633 39.130 0.00 0.00 0.00 2.15
3416 4212 3.703286 ACGCATAACTGTACGCTATCA 57.297 42.857 0.00 0.00 0.00 2.15
3417 4213 3.795101 ACAACGCATAACTGTACGCTATC 59.205 43.478 0.00 0.00 0.00 2.08
3418 4214 3.777478 ACAACGCATAACTGTACGCTAT 58.223 40.909 0.00 0.00 0.00 2.97
3419 4215 3.220507 ACAACGCATAACTGTACGCTA 57.779 42.857 0.00 0.00 0.00 4.26
3421 4217 2.492001 CAACAACGCATAACTGTACGC 58.508 47.619 0.00 0.00 0.00 4.42
3423 4219 2.809696 ACCCAACAACGCATAACTGTAC 59.190 45.455 0.00 0.00 0.00 2.90
3425 4221 1.975660 ACCCAACAACGCATAACTGT 58.024 45.000 0.00 0.00 0.00 3.55
3426 4222 3.243234 TGAAACCCAACAACGCATAACTG 60.243 43.478 0.00 0.00 0.00 3.16
3427 4223 2.952978 TGAAACCCAACAACGCATAACT 59.047 40.909 0.00 0.00 0.00 2.24
3428 4224 3.357166 TGAAACCCAACAACGCATAAC 57.643 42.857 0.00 0.00 0.00 1.89
3429 4225 3.858877 GCATGAAACCCAACAACGCATAA 60.859 43.478 0.00 0.00 0.00 1.90
3430 4226 2.352225 GCATGAAACCCAACAACGCATA 60.352 45.455 0.00 0.00 0.00 3.14
3431 4227 1.605202 GCATGAAACCCAACAACGCAT 60.605 47.619 0.00 0.00 0.00 4.73
3432 4228 0.249238 GCATGAAACCCAACAACGCA 60.249 50.000 0.00 0.00 0.00 5.24
3433 4229 1.274798 CGCATGAAACCCAACAACGC 61.275 55.000 0.00 0.00 0.00 4.84
3434 4230 0.030101 ACGCATGAAACCCAACAACG 59.970 50.000 0.00 0.00 0.00 4.10
3435 4231 2.124122 GAACGCATGAAACCCAACAAC 58.876 47.619 0.00 0.00 0.00 3.32
3436 4232 2.028130 AGAACGCATGAAACCCAACAA 58.972 42.857 0.00 0.00 0.00 2.83
3437 4233 1.336440 CAGAACGCATGAAACCCAACA 59.664 47.619 0.00 0.00 0.00 3.33
3438 4234 1.606668 TCAGAACGCATGAAACCCAAC 59.393 47.619 0.00 0.00 0.00 3.77
3439 4235 1.974265 TCAGAACGCATGAAACCCAA 58.026 45.000 0.00 0.00 0.00 4.12
3440 4236 2.198827 ATCAGAACGCATGAAACCCA 57.801 45.000 0.00 0.00 0.00 4.51
3441 4237 2.614057 CCTATCAGAACGCATGAAACCC 59.386 50.000 0.00 0.00 0.00 4.11
3442 4238 3.063997 CACCTATCAGAACGCATGAAACC 59.936 47.826 0.00 0.00 0.00 3.27
3443 4239 3.684788 ACACCTATCAGAACGCATGAAAC 59.315 43.478 0.00 0.00 0.00 2.78
3444 4240 3.937814 ACACCTATCAGAACGCATGAAA 58.062 40.909 0.00 0.00 0.00 2.69
3445 4241 3.610040 ACACCTATCAGAACGCATGAA 57.390 42.857 0.00 0.00 0.00 2.57
3446 4242 4.099419 ACATACACCTATCAGAACGCATGA 59.901 41.667 0.00 0.00 0.00 3.07
3447 4243 4.371786 ACATACACCTATCAGAACGCATG 58.628 43.478 0.00 0.00 0.00 4.06
3448 4244 4.672587 ACATACACCTATCAGAACGCAT 57.327 40.909 0.00 0.00 0.00 4.73
3449 4245 4.465632 AACATACACCTATCAGAACGCA 57.534 40.909 0.00 0.00 0.00 5.24
3450 4246 5.796350 AAAACATACACCTATCAGAACGC 57.204 39.130 0.00 0.00 0.00 4.84
3470 4266 5.069318 GGCAAATCAAAATCTCCCCAAAAA 58.931 37.500 0.00 0.00 0.00 1.94
3471 4267 4.350520 AGGCAAATCAAAATCTCCCCAAAA 59.649 37.500 0.00 0.00 0.00 2.44
3472 4268 3.909364 AGGCAAATCAAAATCTCCCCAAA 59.091 39.130 0.00 0.00 0.00 3.28
3473 4269 3.519667 AGGCAAATCAAAATCTCCCCAA 58.480 40.909 0.00 0.00 0.00 4.12
3474 4270 3.188880 AGGCAAATCAAAATCTCCCCA 57.811 42.857 0.00 0.00 0.00 4.96
3475 4271 4.895297 TGATAGGCAAATCAAAATCTCCCC 59.105 41.667 0.57 0.00 32.97 4.81
3476 4272 6.469782 TTGATAGGCAAATCAAAATCTCCC 57.530 37.500 11.48 0.00 41.67 4.30
3486 4282 3.442100 GCACAGCTTTGATAGGCAAATC 58.558 45.455 3.47 0.00 44.90 2.17
3497 4293 0.731514 CAGCATTCCGCACAGCTTTG 60.732 55.000 0.00 0.00 46.13 2.77
3508 4304 9.807649 ATAAGTTAAATCATTTGACAGCATTCC 57.192 29.630 7.70 0.00 32.15 3.01
3537 4333 5.527033 AGCATCAAAGAGAGAAAGCAAAAC 58.473 37.500 0.00 0.00 0.00 2.43
3542 4338 4.142643 CCTGAAGCATCAAAGAGAGAAAGC 60.143 45.833 0.00 0.00 34.49 3.51
3552 4348 5.586243 GCTACATAGAACCTGAAGCATCAAA 59.414 40.000 0.00 0.00 34.49 2.69
3559 4355 4.404073 ACCTCTGCTACATAGAACCTGAAG 59.596 45.833 0.00 0.00 0.00 3.02
3652 4448 4.731853 TGCCCATCCTCCCGGACA 62.732 66.667 0.73 0.00 43.51 4.02
3655 4451 3.482232 GATGTGCCCATCCTCCCGG 62.482 68.421 0.00 0.00 41.43 5.73
3784 4580 1.153823 CTGAATGCAAGCAGGCTGC 60.154 57.895 31.56 31.56 45.46 5.25
4072 4868 0.178964 CCTTGAAAGGGGTCTTGCCA 60.179 55.000 0.76 0.00 42.66 4.92
4420 5216 4.668289 GAAAGAGAGGCTAGAAGAACTCG 58.332 47.826 0.00 0.00 35.22 4.18
4442 5238 1.341531 GAGGATCCATAGTCCACCACG 59.658 57.143 15.82 0.00 38.25 4.94
4533 5331 4.351111 ACAACAAATGAGAGTACCTTCCCT 59.649 41.667 0.00 0.00 0.00 4.20
4603 5401 2.185004 TGGCGGAAAAGAGAAAGGAG 57.815 50.000 0.00 0.00 0.00 3.69
4610 5408 3.004734 ACAAGTTCAATGGCGGAAAAGAG 59.995 43.478 0.00 0.00 0.00 2.85
4660 5458 6.128876 CGCAATTAACATGCATAGAGAGAGAG 60.129 42.308 13.66 0.00 44.01 3.20
4661 5459 5.693555 CGCAATTAACATGCATAGAGAGAGA 59.306 40.000 13.66 0.00 44.01 3.10
4793 5610 2.029244 CAGCAGAATAAACGACGCGAAT 59.971 45.455 15.93 0.00 0.00 3.34
4803 5620 3.754965 ACACTGGAAGCAGCAGAATAAA 58.245 40.909 0.00 0.00 37.60 1.40
4851 5668 2.338500 GTGAGGTAGTAACAGCTGCAC 58.662 52.381 15.27 12.38 0.00 4.57
4866 5687 1.486726 GAATACCTGGTCCTGGTGAGG 59.513 57.143 26.51 10.35 41.39 3.86
4898 5719 5.584442 GCATGTCACAATCAGCAATCATAA 58.416 37.500 0.00 0.00 0.00 1.90
4908 5729 3.188254 CCTAAACACGCATGTCACAATCA 59.812 43.478 0.00 0.00 38.45 2.57
4929 5750 5.898397 AGGTATTCTTTACAGAGGGAGTACC 59.102 44.000 0.00 0.00 39.64 3.34
4931 5752 5.897824 CCAGGTATTCTTTACAGAGGGAGTA 59.102 44.000 0.00 0.00 0.00 2.59
4933 5754 4.717280 ACCAGGTATTCTTTACAGAGGGAG 59.283 45.833 0.00 0.00 0.00 4.30
4934 5755 4.695606 ACCAGGTATTCTTTACAGAGGGA 58.304 43.478 0.00 0.00 0.00 4.20
4935 5756 5.437191 AACCAGGTATTCTTTACAGAGGG 57.563 43.478 0.00 0.00 0.00 4.30
4936 5757 7.447238 TCAAAAACCAGGTATTCTTTACAGAGG 59.553 37.037 0.00 0.00 0.00 3.69
4937 5758 8.391075 TCAAAAACCAGGTATTCTTTACAGAG 57.609 34.615 0.00 0.00 0.00 3.35
4938 5759 8.792633 CATCAAAAACCAGGTATTCTTTACAGA 58.207 33.333 0.00 0.00 0.00 3.41
4939 5760 8.576442 ACATCAAAAACCAGGTATTCTTTACAG 58.424 33.333 0.00 0.00 0.00 2.74
4941 5762 9.191995 CAACATCAAAAACCAGGTATTCTTTAC 57.808 33.333 0.00 0.00 0.00 2.01
4943 5764 7.710475 CACAACATCAAAAACCAGGTATTCTTT 59.290 33.333 0.00 0.00 0.00 2.52
4944 5765 7.147742 ACACAACATCAAAAACCAGGTATTCTT 60.148 33.333 0.00 0.00 0.00 2.52
4946 5767 6.420604 CACACAACATCAAAAACCAGGTATTC 59.579 38.462 0.00 0.00 0.00 1.75
4947 5768 6.097554 TCACACAACATCAAAAACCAGGTATT 59.902 34.615 0.00 0.00 0.00 1.89
4948 5769 5.596361 TCACACAACATCAAAAACCAGGTAT 59.404 36.000 0.00 0.00 0.00 2.73
4949 5770 4.950475 TCACACAACATCAAAAACCAGGTA 59.050 37.500 0.00 0.00 0.00 3.08
4950 5771 3.766591 TCACACAACATCAAAAACCAGGT 59.233 39.130 0.00 0.00 0.00 4.00
4951 5772 4.097741 TCTCACACAACATCAAAAACCAGG 59.902 41.667 0.00 0.00 0.00 4.45
4952 5773 5.247507 TCTCACACAACATCAAAAACCAG 57.752 39.130 0.00 0.00 0.00 4.00
4953 5774 5.359292 TCATCTCACACAACATCAAAAACCA 59.641 36.000 0.00 0.00 0.00 3.67
5006 6002 4.430137 TGTTACCGAGTGAGTACATGAC 57.570 45.455 0.00 0.00 0.00 3.06
5007 6003 6.762702 TTATGTTACCGAGTGAGTACATGA 57.237 37.500 0.00 0.00 0.00 3.07
5014 6010 8.288208 ACGTCTAATATTATGTTACCGAGTGAG 58.712 37.037 0.00 0.00 0.00 3.51
5015 6011 8.158169 ACGTCTAATATTATGTTACCGAGTGA 57.842 34.615 0.00 0.00 0.00 3.41
5017 6013 9.807649 AAAACGTCTAATATTATGTTACCGAGT 57.192 29.630 0.00 0.00 0.00 4.18
5020 6016 9.558891 CGAAAAACGTCTAATATTATGTTACCG 57.441 33.333 0.00 3.78 37.22 4.02
5024 6020 9.962759 GTGTCGAAAAACGTCTAATATTATGTT 57.037 29.630 0.00 0.00 43.13 2.71
5025 6021 9.362539 AGTGTCGAAAAACGTCTAATATTATGT 57.637 29.630 0.00 0.00 43.13 2.29
5035 6031 7.647907 AACATAATAGTGTCGAAAAACGTCT 57.352 32.000 0.00 0.00 43.13 4.18
5036 6032 9.405083 CATAACATAATAGTGTCGAAAAACGTC 57.595 33.333 0.00 0.00 43.13 4.34
5037 6033 8.385111 CCATAACATAATAGTGTCGAAAAACGT 58.615 33.333 0.00 0.00 43.13 3.99
5038 6034 8.597227 TCCATAACATAATAGTGTCGAAAAACG 58.403 33.333 0.00 0.00 44.09 3.60
5039 6035 9.916397 CTCCATAACATAATAGTGTCGAAAAAC 57.084 33.333 0.00 0.00 0.00 2.43
5040 6036 9.661563 ACTCCATAACATAATAGTGTCGAAAAA 57.338 29.630 0.00 0.00 0.00 1.94
5041 6037 9.093970 CACTCCATAACATAATAGTGTCGAAAA 57.906 33.333 0.00 0.00 31.82 2.29
5043 6039 8.002984 TCACTCCATAACATAATAGTGTCGAA 57.997 34.615 0.00 0.00 36.56 3.71
5044 6040 7.576861 TCACTCCATAACATAATAGTGTCGA 57.423 36.000 0.00 0.00 36.56 4.20
5055 6051 9.658799 GCATACTTACATATCACTCCATAACAT 57.341 33.333 0.00 0.00 0.00 2.71
5056 6052 8.870116 AGCATACTTACATATCACTCCATAACA 58.130 33.333 0.00 0.00 0.00 2.41
5091 6087 5.163088 ACCAGAGACAGTTATTTTTGGGACT 60.163 40.000 0.00 0.00 0.00 3.85
5095 6091 8.076178 CACTAAACCAGAGACAGTTATTTTTGG 58.924 37.037 0.00 0.00 0.00 3.28
5097 6093 7.284489 TGCACTAAACCAGAGACAGTTATTTTT 59.716 33.333 0.00 0.00 0.00 1.94
5114 6110 5.751243 TTCCTCTCAAAGTTGCACTAAAC 57.249 39.130 0.00 0.00 0.00 2.01
5121 6117 4.948847 ACCAAAATTCCTCTCAAAGTTGC 58.051 39.130 0.00 0.00 0.00 4.17
5130 6189 5.600069 AGCTGAAGAAAACCAAAATTCCTCT 59.400 36.000 0.00 0.00 0.00 3.69
5135 6194 9.836864 AAAATCTAGCTGAAGAAAACCAAAATT 57.163 25.926 0.00 0.00 0.00 1.82
5140 6199 7.230510 TGCTTAAAATCTAGCTGAAGAAAACCA 59.769 33.333 0.00 0.00 38.22 3.67
5142 6201 9.070149 CATGCTTAAAATCTAGCTGAAGAAAAC 57.930 33.333 0.00 0.00 38.22 2.43
5146 6205 5.824624 CCCATGCTTAAAATCTAGCTGAAGA 59.175 40.000 0.00 0.00 38.22 2.87
5154 6213 5.200483 CCCAAGACCCATGCTTAAAATCTA 58.800 41.667 0.00 0.00 0.00 1.98
5162 6221 1.384191 GGACCCAAGACCCATGCTT 59.616 57.895 0.00 0.00 0.00 3.91
5163 6222 1.852157 TGGACCCAAGACCCATGCT 60.852 57.895 0.00 0.00 0.00 3.79
5183 6246 0.029567 CAGCCGAGAGATACGTCCAC 59.970 60.000 0.00 0.00 0.00 4.02
5240 6308 1.344953 ACAGGCCTGTGAGTTGTGGA 61.345 55.000 37.39 0.00 43.11 4.02
5241 6309 0.466189 AACAGGCCTGTGAGTTGTGG 60.466 55.000 38.35 8.63 44.13 4.17
5242 6310 0.664761 CAACAGGCCTGTGAGTTGTG 59.335 55.000 38.35 26.47 44.13 3.33
5288 6360 1.196104 AGTAGCACCCAACCGCCTTA 61.196 55.000 0.00 0.00 0.00 2.69
5289 6361 2.033602 GTAGCACCCAACCGCCTT 59.966 61.111 0.00 0.00 0.00 4.35
5295 6367 0.391263 CGGAGGAAGTAGCACCCAAC 60.391 60.000 0.00 0.00 0.00 3.77
5304 6376 6.183360 CCATCTATTTTGAGACGGAGGAAGTA 60.183 42.308 0.00 0.00 29.96 2.24
5307 6379 4.683400 GCCATCTATTTTGAGACGGAGGAA 60.683 45.833 0.00 0.00 29.96 3.36
5308 6380 3.181465 GCCATCTATTTTGAGACGGAGGA 60.181 47.826 0.00 0.00 29.96 3.71
5309 6381 3.134458 GCCATCTATTTTGAGACGGAGG 58.866 50.000 0.00 0.00 29.96 4.30
5310 6382 4.054671 GAGCCATCTATTTTGAGACGGAG 58.945 47.826 0.00 0.00 29.96 4.63
5313 6385 4.872691 AGTTGAGCCATCTATTTTGAGACG 59.127 41.667 0.00 0.00 0.00 4.18
5314 6386 6.749923 AAGTTGAGCCATCTATTTTGAGAC 57.250 37.500 0.00 0.00 0.00 3.36
5359 6431 8.331931 TGATGTTTCCCTACTGAAAGGTATAT 57.668 34.615 0.00 0.00 39.30 0.86
5362 6434 6.352737 GGATGATGTTTCCCTACTGAAAGGTA 60.353 42.308 0.00 0.00 39.30 3.08
5363 6435 4.993705 TGATGTTTCCCTACTGAAAGGT 57.006 40.909 0.00 0.00 39.30 3.50
5365 6437 5.749462 AGGATGATGTTTCCCTACTGAAAG 58.251 41.667 0.00 0.00 35.04 2.62
5366 6438 5.250543 TGAGGATGATGTTTCCCTACTGAAA 59.749 40.000 0.00 0.00 33.45 2.69
5367 6439 4.782691 TGAGGATGATGTTTCCCTACTGAA 59.217 41.667 0.00 0.00 33.45 3.02
5368 6440 4.361783 TGAGGATGATGTTTCCCTACTGA 58.638 43.478 0.00 0.00 33.45 3.41
5369 6441 4.760530 TGAGGATGATGTTTCCCTACTG 57.239 45.455 0.00 0.00 33.45 2.74
5372 6444 5.626809 CGTCTTTGAGGATGATGTTTCCCTA 60.627 44.000 0.00 0.00 33.45 3.53
5385 6490 2.956333 TGACTTGACTCGTCTTTGAGGA 59.044 45.455 0.00 0.00 40.39 3.71
5404 6509 0.834261 TCCTCAACGGATGGTGGTGA 60.834 55.000 0.00 0.00 36.69 4.02
5412 6517 3.456277 AGAAATAGCCTTCCTCAACGGAT 59.544 43.478 0.00 0.00 42.70 4.18
5425 6530 1.470098 CACACACTGCCAGAAATAGCC 59.530 52.381 0.00 0.00 0.00 3.93
5426 6531 2.160417 GTCACACACTGCCAGAAATAGC 59.840 50.000 0.00 0.00 0.00 2.97
5459 6592 2.519377 TACCATCTTGGGCGATAACG 57.481 50.000 0.00 0.00 43.37 3.18
5462 6595 1.548719 CCGATACCATCTTGGGCGATA 59.451 52.381 0.00 0.00 43.37 2.92
5465 6598 0.880278 CACCGATACCATCTTGGGCG 60.880 60.000 0.00 0.00 43.37 6.13
5467 6600 0.108585 CCCACCGATACCATCTTGGG 59.891 60.000 7.81 7.81 43.37 4.12
5479 6612 1.259142 TTTCGTATGGAGCCCACCGA 61.259 55.000 11.32 11.32 38.07 4.69
5480 6613 0.391927 TTTTCGTATGGAGCCCACCG 60.392 55.000 0.00 3.09 35.80 4.94
5481 6614 1.379527 CTTTTCGTATGGAGCCCACC 58.620 55.000 0.00 0.00 35.80 4.61
5483 6616 0.618458 AGCTTTTCGTATGGAGCCCA 59.382 50.000 0.00 0.00 38.19 5.36
5484 6617 1.017387 CAGCTTTTCGTATGGAGCCC 58.983 55.000 0.00 0.00 35.79 5.19
5487 6620 4.260784 GGCATAACAGCTTTTCGTATGGAG 60.261 45.833 0.00 0.00 34.17 3.86
5489 6622 3.376859 TGGCATAACAGCTTTTCGTATGG 59.623 43.478 0.00 0.00 34.17 2.74
5491 6624 5.356751 TGATTGGCATAACAGCTTTTCGTAT 59.643 36.000 0.00 0.00 34.17 3.06
5492 6625 4.697828 TGATTGGCATAACAGCTTTTCGTA 59.302 37.500 0.00 0.00 34.17 3.43
5493 6626 3.505680 TGATTGGCATAACAGCTTTTCGT 59.494 39.130 0.00 0.00 34.17 3.85
5494 6627 4.095410 TGATTGGCATAACAGCTTTTCG 57.905 40.909 0.00 0.00 34.17 3.46
5496 6629 4.460948 CCTGATTGGCATAACAGCTTTT 57.539 40.909 9.50 0.00 34.17 2.27
5545 6678 2.515641 CGACGACACGCTTTACTAGA 57.484 50.000 0.00 0.00 0.00 2.43
5560 6693 1.811266 CCTGTCATCTTGGGCGACG 60.811 63.158 0.00 0.00 32.17 5.12
5577 6710 3.055094 TCTTTCATACTGAACCTGGCTCC 60.055 47.826 0.00 0.00 35.89 4.70
5578 6711 4.207891 TCTTTCATACTGAACCTGGCTC 57.792 45.455 0.00 0.00 35.89 4.70
5579 6712 4.042187 ACTTCTTTCATACTGAACCTGGCT 59.958 41.667 0.00 0.00 35.89 4.75
5580 6713 4.327680 ACTTCTTTCATACTGAACCTGGC 58.672 43.478 0.00 0.00 35.89 4.85
5581 6714 5.765182 ACAACTTCTTTCATACTGAACCTGG 59.235 40.000 0.00 0.00 35.89 4.45
5582 6715 6.867662 ACAACTTCTTTCATACTGAACCTG 57.132 37.500 0.00 0.00 35.89 4.00
5589 6722 6.128138 AGGCCTAACAACTTCTTTCATACT 57.872 37.500 1.29 0.00 0.00 2.12
5605 6738 2.356741 GGTAGCACCATTGAAGGCCTAA 60.357 50.000 5.16 0.00 38.42 2.69
5627 6760 3.199727 ACCTTTTTGGCCAATTTGACACT 59.800 39.130 21.26 0.00 40.22 3.55
5631 6764 2.570135 GCACCTTTTTGGCCAATTTGA 58.430 42.857 21.26 0.00 40.22 2.69
5657 6790 2.582052 TGAAGGCCTAACAACTTGGTG 58.418 47.619 5.16 0.00 0.00 4.17
5689 6822 2.877786 CCTTTTTGGCCAATTTGACACC 59.122 45.455 21.26 0.00 0.00 4.16
5690 6823 3.312146 CACCTTTTTGGCCAATTTGACAC 59.688 43.478 21.26 0.00 40.22 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.