Multiple sequence alignment - TraesCS5B01G252400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G252400 chr5B 100.000 5021 0 0 1 5021 434923402 434918382 0.000000e+00 9273.0
1 TraesCS5B01G252400 chr5B 94.444 450 21 3 818 1267 434830653 434830208 0.000000e+00 689.0
2 TraesCS5B01G252400 chr5B 87.417 604 54 12 2786 3375 434827313 434826718 0.000000e+00 675.0
3 TraesCS5B01G252400 chr5B 81.627 713 81 33 3518 4201 434826664 434825973 3.420000e-151 545.0
4 TraesCS5B01G252400 chr5B 89.706 136 12 2 4420 4554 51647267 51647133 6.680000e-39 172.0
5 TraesCS5B01G252400 chr5B 90.826 109 8 2 3416 3522 479726934 479726826 1.460000e-30 145.0
6 TraesCS5B01G252400 chr5D 92.106 2863 131 45 2198 5021 367589360 367586554 0.000000e+00 3947.0
7 TraesCS5B01G252400 chr5D 97.442 1955 38 6 1 1944 367591311 367589358 0.000000e+00 3323.0
8 TraesCS5B01G252400 chr5D 97.098 448 12 1 820 1267 367441771 367441325 0.000000e+00 754.0
9 TraesCS5B01G252400 chr5D 86.281 605 59 13 2786 3375 367437230 367436635 1.970000e-178 636.0
10 TraesCS5B01G252400 chr5D 87.130 575 38 13 277 824 423848548 423847983 1.990000e-173 619.0
11 TraesCS5B01G252400 chr5D 83.415 410 53 9 3798 4201 367436274 367435874 2.860000e-97 366.0
12 TraesCS5B01G252400 chr5D 86.909 275 22 10 3530 3800 367436569 367436305 3.800000e-76 296.0
13 TraesCS5B01G252400 chr5D 94.340 159 9 0 102 260 423848900 423848742 1.400000e-60 244.0
14 TraesCS5B01G252400 chr5D 90.826 109 8 2 3416 3522 399614621 399614513 1.460000e-30 145.0
15 TraesCS5B01G252400 chr5A 95.188 1621 55 13 2198 3805 469422533 469420923 0.000000e+00 2540.0
16 TraesCS5B01G252400 chr5A 94.722 1080 41 6 827 1898 469423616 469422545 0.000000e+00 1664.0
17 TraesCS5B01G252400 chr5A 92.455 729 27 14 1819 2520 456286714 456285987 0.000000e+00 1016.0
18 TraesCS5B01G252400 chr5A 92.985 613 32 6 3798 4406 469420896 469420291 0.000000e+00 883.0
19 TraesCS5B01G252400 chr5A 94.643 448 19 4 820 1267 469113707 469113265 0.000000e+00 689.0
20 TraesCS5B01G252400 chr5A 92.308 481 29 2 1351 1823 456293853 456293373 0.000000e+00 676.0
21 TraesCS5B01G252400 chr5A 87.231 603 60 11 2786 3375 469111578 469110980 0.000000e+00 671.0
22 TraesCS5B01G252400 chr5A 89.327 431 24 5 820 1245 469491848 469491435 5.760000e-144 521.0
23 TraesCS5B01G252400 chr5A 91.489 329 24 2 494 818 470350004 470350332 2.760000e-122 449.0
24 TraesCS5B01G252400 chr5A 93.548 279 18 0 827 1105 456294132 456293854 2.800000e-112 416.0
25 TraesCS5B01G252400 chr5A 86.111 324 34 6 3810 4128 469110592 469110275 6.230000e-89 339.0
26 TraesCS5B01G252400 chr5A 84.899 298 28 12 3518 3805 469110926 469110636 8.230000e-73 285.0
27 TraesCS5B01G252400 chr5A 85.641 195 12 7 4233 4420 469357434 469357249 1.840000e-44 191.0
28 TraesCS5B01G252400 chr5A 88.235 136 14 2 4420 4554 138250004 138250138 1.450000e-35 161.0
29 TraesCS5B01G252400 chr3D 95.756 377 11 3 449 820 464059871 464059495 2.000000e-168 603.0
30 TraesCS5B01G252400 chr3D 97.692 260 6 0 1 260 464060684 464060425 9.920000e-122 448.0
31 TraesCS5B01G252400 chr3D 82.270 423 55 9 4614 5020 275443825 275443407 1.030000e-91 348.0
32 TraesCS5B01G252400 chr3D 92.350 183 9 2 276 458 464060110 464059933 6.450000e-64 255.0
33 TraesCS5B01G252400 chr2D 95.263 380 13 3 449 824 538392360 538392738 9.300000e-167 597.0
34 TraesCS5B01G252400 chr2D 98.077 260 5 0 1 260 538391541 538391800 2.130000e-123 453.0
35 TraesCS5B01G252400 chr2D 93.810 210 11 2 51 260 548897578 548897785 1.050000e-81 315.0
36 TraesCS5B01G252400 chr2D 93.407 182 9 1 277 458 538392120 538392298 2.980000e-67 267.0
37 TraesCS5B01G252400 chr2D 94.969 159 8 0 102 260 110055732 110055574 3.000000e-62 250.0
38 TraesCS5B01G252400 chr2D 90.710 183 11 3 276 458 110055380 110055204 6.500000e-59 239.0
39 TraesCS5B01G252400 chr7D 91.045 335 26 2 494 824 272824707 272824373 2.760000e-122 449.0
40 TraesCS5B01G252400 chr7D 90.448 335 24 5 494 824 521644753 521645083 7.720000e-118 435.0
41 TraesCS5B01G252400 chr7D 95.473 243 11 0 18 260 580058221 580057979 6.100000e-104 388.0
42 TraesCS5B01G252400 chr7D 83.693 417 48 14 4619 5021 357904147 357904557 4.750000e-100 375.0
43 TraesCS5B01G252400 chr7D 93.416 243 15 1 18 260 407792232 407791991 4.780000e-95 359.0
44 TraesCS5B01G252400 chr7D 93.711 159 10 0 102 260 272825314 272825156 6.500000e-59 239.0
45 TraesCS5B01G252400 chr3A 91.045 335 22 4 494 824 726000466 726000136 3.570000e-121 446.0
46 TraesCS5B01G252400 chr3A 89.305 187 14 2 277 463 726000719 726000539 3.910000e-56 230.0
47 TraesCS5B01G252400 chr3A 88.679 106 10 2 3416 3521 675873082 675873185 1.470000e-25 128.0
48 TraesCS5B01G252400 chr6D 90.634 331 27 2 494 820 445174727 445174397 2.150000e-118 436.0
49 TraesCS5B01G252400 chr6D 82.270 423 55 9 4614 5020 35690855 35690437 1.030000e-91 348.0
50 TraesCS5B01G252400 chr6D 88.148 135 14 2 4421 4554 175923437 175923304 5.200000e-35 159.0
51 TraesCS5B01G252400 chr3B 83.784 407 49 9 4619 5011 369370333 369370736 2.210000e-98 370.0
52 TraesCS5B01G252400 chr3B 88.889 135 13 2 4421 4554 224861782 224861915 1.120000e-36 165.0
53 TraesCS5B01G252400 chr3B 85.906 149 17 4 4408 4554 557935949 557936095 6.730000e-34 156.0
54 TraesCS5B01G252400 chr1D 85.340 382 24 11 277 632 110580510 110580135 2.860000e-97 366.0
55 TraesCS5B01G252400 chr1D 94.737 38 1 1 4555 4592 25099047 25099083 1.950000e-04 58.4
56 TraesCS5B01G252400 chr2B 82.968 411 55 9 4618 5015 234373370 234373778 1.720000e-94 357.0
57 TraesCS5B01G252400 chr2B 91.000 100 9 0 3415 3514 91040307 91040406 8.770000e-28 135.0
58 TraesCS5B01G252400 chr7B 78.983 590 62 28 276 820 454519522 454520094 3.720000e-91 346.0
59 TraesCS5B01G252400 chr7B 90.164 183 12 3 276 458 332401269 332401445 3.020000e-57 233.0
60 TraesCS5B01G252400 chrUn 82.254 417 56 10 4619 5020 320143657 320143244 1.340000e-90 344.0
61 TraesCS5B01G252400 chrUn 82.254 417 56 10 4619 5020 322464439 322464026 1.340000e-90 344.0
62 TraesCS5B01G252400 chrUn 82.254 417 56 10 4619 5020 381118758 381119171 1.340000e-90 344.0
63 TraesCS5B01G252400 chr4B 90.370 135 11 2 4421 4554 65724681 65724814 5.170000e-40 176.0
64 TraesCS5B01G252400 chr6B 89.630 135 12 2 4421 4554 642272802 642272669 2.400000e-38 171.0
65 TraesCS5B01G252400 chr4D 88.148 135 14 2 4421 4554 480614403 480614536 5.200000e-35 159.0
66 TraesCS5B01G252400 chr4D 91.919 99 8 0 3416 3514 32019551 32019453 6.780000e-29 139.0
67 TraesCS5B01G252400 chr4D 91.919 99 8 0 3416 3514 32019733 32019635 6.780000e-29 139.0
68 TraesCS5B01G252400 chr1A 93.478 92 6 0 3420 3511 520812257 520812348 2.440000e-28 137.0
69 TraesCS5B01G252400 chr1B 87.379 103 12 1 4420 4521 43135586 43135484 3.180000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G252400 chr5B 434918382 434923402 5020 True 9273.000000 9273 100.000000 1 5021 1 chr5B.!!$R2 5020
1 TraesCS5B01G252400 chr5B 434825973 434830653 4680 True 636.333333 689 87.829333 818 4201 3 chr5B.!!$R4 3383
2 TraesCS5B01G252400 chr5D 367586554 367591311 4757 True 3635.000000 3947 94.774000 1 5021 2 chr5D.!!$R4 5020
3 TraesCS5B01G252400 chr5D 367435874 367437230 1356 True 432.666667 636 85.535000 2786 4201 3 chr5D.!!$R3 1415
4 TraesCS5B01G252400 chr5D 423847983 423848900 917 True 431.500000 619 90.735000 102 824 2 chr5D.!!$R5 722
5 TraesCS5B01G252400 chr5A 469420291 469423616 3325 True 1695.666667 2540 94.298333 827 4406 3 chr5A.!!$R6 3579
6 TraesCS5B01G252400 chr5A 456285987 456286714 727 True 1016.000000 1016 92.455000 1819 2520 1 chr5A.!!$R1 701
7 TraesCS5B01G252400 chr5A 456293373 456294132 759 True 546.000000 676 92.928000 827 1823 2 chr5A.!!$R4 996
8 TraesCS5B01G252400 chr5A 469110275 469113707 3432 True 496.000000 689 88.221000 820 4128 4 chr5A.!!$R5 3308
9 TraesCS5B01G252400 chr3D 464059495 464060684 1189 True 435.333333 603 95.266000 1 820 3 chr3D.!!$R2 819
10 TraesCS5B01G252400 chr2D 538391541 538392738 1197 False 439.000000 597 95.582333 1 824 3 chr2D.!!$F2 823
11 TraesCS5B01G252400 chr2D 110055204 110055732 528 True 244.500000 250 92.839500 102 458 2 chr2D.!!$R1 356
12 TraesCS5B01G252400 chr7D 272824373 272825314 941 True 344.000000 449 92.378000 102 824 2 chr7D.!!$R3 722
13 TraesCS5B01G252400 chr3A 726000136 726000719 583 True 338.000000 446 90.175000 277 824 2 chr3A.!!$R1 547
14 TraesCS5B01G252400 chr7B 454519522 454520094 572 False 346.000000 346 78.983000 276 820 1 chr7B.!!$F2 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 594 0.178990 GTCTGTTTGCAGGGTCCCTT 60.179 55.0 8.08 0.0 42.78 3.95 F
1958 2415 0.386731 GGAAACGGGAAATGCACACG 60.387 55.0 0.00 0.0 40.19 4.49 F
2115 2572 0.098376 CCTCGTCGAGTTTCCTACCG 59.902 60.0 20.37 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2096 2553 0.098376 CGGTAGGAAACTCGACGAGG 59.902 60.000 27.39 10.77 43.67 4.63 R
3130 6360 0.806492 GCTACTTACCAGCCGCACTC 60.806 60.000 0.00 0.00 32.68 3.51 R
4024 7354 1.583477 GCTGCTGTGCCTTTCTTCC 59.417 57.895 0.00 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
290 594 0.178990 GTCTGTTTGCAGGGTCCCTT 60.179 55.000 8.08 0.00 42.78 3.95
362 667 3.181477 TGCTGTCTTGTGGTTGGAATTTG 60.181 43.478 0.00 0.00 0.00 2.32
383 688 2.493675 GTGCTCCTGTCATGTACTCTCA 59.506 50.000 0.00 0.00 0.00 3.27
688 1110 1.764134 ACAGTGTTTTGTACGGAGGGA 59.236 47.619 0.00 0.00 0.00 4.20
698 1139 2.907696 TGTACGGAGGGAAATTTGAGGA 59.092 45.455 0.00 0.00 0.00 3.71
734 1177 2.225267 GGGGATTTGAGGTTTCAAGGGA 60.225 50.000 0.00 0.00 43.76 4.20
1485 1932 3.543852 GCGTCAAATGCCAACAAAAACAG 60.544 43.478 0.00 0.00 0.00 3.16
1503 1950 8.798153 CAAAAACAGCTAAACTCAAGTTTGTAG 58.202 33.333 16.46 9.08 46.56 2.74
1658 2112 4.756642 TGAGAACATCGTCAGCAAGAAAAT 59.243 37.500 0.00 0.00 0.00 1.82
1796 2253 1.059913 CTGTTCCTTCCACTGTCCCT 58.940 55.000 0.00 0.00 0.00 4.20
1809 2266 3.629398 CACTGTCCCTAAATGATTGGCTC 59.371 47.826 0.00 0.00 0.00 4.70
1872 2329 7.954248 GTGCTAATAATCAGATTATGTGCTTCG 59.046 37.037 25.35 9.59 35.71 3.79
1941 2398 4.219725 TGTCAGTTCAGTACATTGATCGGA 59.780 41.667 0.00 0.00 0.00 4.55
1942 2399 5.168569 GTCAGTTCAGTACATTGATCGGAA 58.831 41.667 0.00 0.00 0.00 4.30
1943 2400 5.637810 GTCAGTTCAGTACATTGATCGGAAA 59.362 40.000 0.00 0.00 0.00 3.13
1944 2401 5.637810 TCAGTTCAGTACATTGATCGGAAAC 59.362 40.000 0.00 0.00 0.00 2.78
1957 2414 3.489813 GGAAACGGGAAATGCACAC 57.510 52.632 0.00 0.00 0.00 3.82
1958 2415 0.386731 GGAAACGGGAAATGCACACG 60.387 55.000 0.00 0.00 40.19 4.49
1959 2416 1.001745 GAAACGGGAAATGCACACGC 61.002 55.000 0.00 0.00 37.71 5.34
1960 2417 1.452145 AAACGGGAAATGCACACGCT 61.452 50.000 0.00 0.00 37.71 5.07
1961 2418 1.452145 AACGGGAAATGCACACGCTT 61.452 50.000 0.00 0.00 37.71 4.68
1962 2419 1.154225 CGGGAAATGCACACGCTTC 60.154 57.895 0.00 0.00 39.64 3.86
1963 2420 1.577328 CGGGAAATGCACACGCTTCT 61.577 55.000 0.00 0.00 39.64 2.85
1964 2421 1.448985 GGGAAATGCACACGCTTCTA 58.551 50.000 0.00 0.00 39.64 2.10
1965 2422 1.810151 GGGAAATGCACACGCTTCTAA 59.190 47.619 0.00 0.00 39.64 2.10
1966 2423 2.423538 GGGAAATGCACACGCTTCTAAT 59.576 45.455 0.00 0.00 39.64 1.73
1967 2424 3.119495 GGGAAATGCACACGCTTCTAATT 60.119 43.478 0.00 0.00 39.64 1.40
1968 2425 4.098416 GGAAATGCACACGCTTCTAATTC 58.902 43.478 0.00 0.00 39.64 2.17
1969 2426 4.142600 GGAAATGCACACGCTTCTAATTCT 60.143 41.667 0.00 0.00 39.64 2.40
1970 2427 5.064707 GGAAATGCACACGCTTCTAATTCTA 59.935 40.000 0.00 0.00 39.64 2.10
1971 2428 6.403200 GGAAATGCACACGCTTCTAATTCTAA 60.403 38.462 0.00 0.00 39.64 2.10
1972 2429 6.494893 AATGCACACGCTTCTAATTCTAAA 57.505 33.333 0.00 0.00 39.64 1.85
1973 2430 6.683974 ATGCACACGCTTCTAATTCTAAAT 57.316 33.333 0.00 0.00 39.64 1.40
1974 2431 6.494893 TGCACACGCTTCTAATTCTAAATT 57.505 33.333 0.00 0.00 39.64 1.82
1975 2432 7.603963 TGCACACGCTTCTAATTCTAAATTA 57.396 32.000 0.00 0.00 39.64 1.40
1976 2433 7.684670 TGCACACGCTTCTAATTCTAAATTAG 58.315 34.615 11.50 11.50 39.64 1.73
1977 2434 6.629252 GCACACGCTTCTAATTCTAAATTAGC 59.371 38.462 12.51 5.47 32.22 3.09
1978 2435 7.676338 GCACACGCTTCTAATTCTAAATTAGCA 60.676 37.037 12.51 3.89 32.22 3.49
1979 2436 8.338259 CACACGCTTCTAATTCTAAATTAGCAT 58.662 33.333 12.51 0.00 33.00 3.79
1980 2437 8.893727 ACACGCTTCTAATTCTAAATTAGCATT 58.106 29.630 12.51 3.62 33.00 3.56
1999 2456 9.515226 TTAGCATTATTTCAAGTTACTGAAGGT 57.485 29.630 0.00 0.00 36.69 3.50
2000 2457 8.409358 AGCATTATTTCAAGTTACTGAAGGTT 57.591 30.769 0.00 0.00 36.69 3.50
2001 2458 8.299570 AGCATTATTTCAAGTTACTGAAGGTTG 58.700 33.333 0.00 0.00 36.69 3.77
2002 2459 8.082242 GCATTATTTCAAGTTACTGAAGGTTGT 58.918 33.333 0.00 0.00 36.69 3.32
2005 2462 9.616156 TTATTTCAAGTTACTGAAGGTTGTACA 57.384 29.630 0.00 0.00 36.69 2.90
2006 2463 8.691661 ATTTCAAGTTACTGAAGGTTGTACAT 57.308 30.769 0.00 0.00 36.69 2.29
2007 2464 7.490962 TTCAAGTTACTGAAGGTTGTACATG 57.509 36.000 0.00 0.00 31.67 3.21
2008 2465 5.995282 TCAAGTTACTGAAGGTTGTACATGG 59.005 40.000 0.00 0.00 0.00 3.66
2009 2466 4.906618 AGTTACTGAAGGTTGTACATGGG 58.093 43.478 0.00 0.00 0.00 4.00
2010 2467 4.595781 AGTTACTGAAGGTTGTACATGGGA 59.404 41.667 0.00 0.00 0.00 4.37
2011 2468 5.072600 AGTTACTGAAGGTTGTACATGGGAA 59.927 40.000 0.00 0.00 0.00 3.97
2012 2469 4.657814 ACTGAAGGTTGTACATGGGAAT 57.342 40.909 0.00 0.00 0.00 3.01
2013 2470 4.589908 ACTGAAGGTTGTACATGGGAATC 58.410 43.478 0.00 0.00 0.00 2.52
2014 2471 4.042809 ACTGAAGGTTGTACATGGGAATCA 59.957 41.667 0.00 0.00 0.00 2.57
2015 2472 4.588899 TGAAGGTTGTACATGGGAATCAG 58.411 43.478 0.00 0.00 0.00 2.90
2016 2473 3.652057 AGGTTGTACATGGGAATCAGG 57.348 47.619 0.00 0.00 0.00 3.86
2017 2474 2.919602 AGGTTGTACATGGGAATCAGGT 59.080 45.455 0.00 0.00 43.38 4.00
2018 2475 3.333680 AGGTTGTACATGGGAATCAGGTT 59.666 43.478 0.00 0.00 41.07 3.50
2019 2476 4.538490 AGGTTGTACATGGGAATCAGGTTA 59.462 41.667 0.00 0.00 41.07 2.85
2020 2477 5.193728 AGGTTGTACATGGGAATCAGGTTAT 59.806 40.000 0.00 0.00 41.07 1.89
2021 2478 5.299279 GGTTGTACATGGGAATCAGGTTATG 59.701 44.000 0.00 0.00 41.07 1.90
2022 2479 5.708736 TGTACATGGGAATCAGGTTATGT 57.291 39.130 0.00 0.00 41.07 2.29
2023 2480 5.436175 TGTACATGGGAATCAGGTTATGTG 58.564 41.667 0.00 0.00 41.07 3.21
2024 2481 3.290710 ACATGGGAATCAGGTTATGTGC 58.709 45.455 0.00 0.00 37.01 4.57
2025 2482 3.053395 ACATGGGAATCAGGTTATGTGCT 60.053 43.478 0.00 0.00 37.01 4.40
2026 2483 4.165950 ACATGGGAATCAGGTTATGTGCTA 59.834 41.667 0.00 0.00 37.01 3.49
2027 2484 4.853468 TGGGAATCAGGTTATGTGCTAA 57.147 40.909 0.00 0.00 0.00 3.09
2028 2485 5.387113 TGGGAATCAGGTTATGTGCTAAT 57.613 39.130 0.00 0.00 0.00 1.73
2029 2486 6.508030 TGGGAATCAGGTTATGTGCTAATA 57.492 37.500 0.00 0.00 0.00 0.98
2030 2487 6.905736 TGGGAATCAGGTTATGTGCTAATAA 58.094 36.000 0.00 0.00 0.00 1.40
2031 2488 7.526041 TGGGAATCAGGTTATGTGCTAATAAT 58.474 34.615 0.00 0.00 0.00 1.28
2032 2489 7.665559 TGGGAATCAGGTTATGTGCTAATAATC 59.334 37.037 0.00 0.00 0.00 1.75
2033 2490 7.665559 GGGAATCAGGTTATGTGCTAATAATCA 59.334 37.037 5.41 0.00 0.00 2.57
2034 2491 8.725148 GGAATCAGGTTATGTGCTAATAATCAG 58.275 37.037 5.41 0.00 0.00 2.90
2035 2492 9.494271 GAATCAGGTTATGTGCTAATAATCAGA 57.506 33.333 5.41 3.54 0.00 3.27
2086 2543 9.685276 TTAGATGATCCTGTGTATTCATTTTGT 57.315 29.630 0.00 0.00 0.00 2.83
2088 2545 9.113838 AGATGATCCTGTGTATTCATTTTGTAC 57.886 33.333 0.00 0.00 0.00 2.90
2089 2546 8.806429 ATGATCCTGTGTATTCATTTTGTACA 57.194 30.769 0.00 0.00 0.00 2.90
2090 2547 8.267620 TGATCCTGTGTATTCATTTTGTACAG 57.732 34.615 0.00 0.00 35.17 2.74
2091 2548 8.100164 TGATCCTGTGTATTCATTTTGTACAGA 58.900 33.333 0.00 0.00 36.96 3.41
2092 2549 7.667043 TCCTGTGTATTCATTTTGTACAGAC 57.333 36.000 0.00 0.00 36.96 3.51
2093 2550 7.220740 TCCTGTGTATTCATTTTGTACAGACA 58.779 34.615 0.00 0.00 36.96 3.41
2094 2551 7.717436 TCCTGTGTATTCATTTTGTACAGACAA 59.283 33.333 0.00 0.00 43.94 3.18
2095 2552 8.514594 CCTGTGTATTCATTTTGTACAGACAAT 58.485 33.333 0.00 0.00 44.96 2.71
2096 2553 9.546909 CTGTGTATTCATTTTGTACAGACAATC 57.453 33.333 0.00 0.00 44.96 2.67
2097 2554 8.511321 TGTGTATTCATTTTGTACAGACAATCC 58.489 33.333 0.00 0.00 44.96 3.01
2098 2555 8.730680 GTGTATTCATTTTGTACAGACAATCCT 58.269 33.333 0.00 0.00 44.96 3.24
2099 2556 8.946085 TGTATTCATTTTGTACAGACAATCCTC 58.054 33.333 0.00 0.00 44.96 3.71
2100 2557 6.480524 TTCATTTTGTACAGACAATCCTCG 57.519 37.500 0.00 0.00 44.96 4.63
2101 2558 5.547465 TCATTTTGTACAGACAATCCTCGT 58.453 37.500 0.00 0.00 44.96 4.18
2102 2559 5.637810 TCATTTTGTACAGACAATCCTCGTC 59.362 40.000 0.00 0.00 44.96 4.20
2103 2560 2.913777 TGTACAGACAATCCTCGTCG 57.086 50.000 0.00 0.00 38.46 5.12
2104 2561 2.429478 TGTACAGACAATCCTCGTCGA 58.571 47.619 0.00 0.00 38.46 4.20
2105 2562 2.418976 TGTACAGACAATCCTCGTCGAG 59.581 50.000 15.53 15.53 38.46 4.04
2106 2563 1.535833 ACAGACAATCCTCGTCGAGT 58.464 50.000 20.37 2.54 38.46 4.18
2107 2564 1.887198 ACAGACAATCCTCGTCGAGTT 59.113 47.619 20.37 6.88 38.46 3.01
2108 2565 2.296471 ACAGACAATCCTCGTCGAGTTT 59.704 45.455 20.37 11.01 38.46 2.66
2109 2566 2.917971 CAGACAATCCTCGTCGAGTTTC 59.082 50.000 20.37 9.04 38.46 2.78
2110 2567 2.094649 AGACAATCCTCGTCGAGTTTCC 60.095 50.000 20.37 8.20 38.46 3.13
2111 2568 1.893801 ACAATCCTCGTCGAGTTTCCT 59.106 47.619 20.37 0.00 0.00 3.36
2112 2569 3.087031 ACAATCCTCGTCGAGTTTCCTA 58.913 45.455 20.37 0.11 0.00 2.94
2113 2570 3.119566 ACAATCCTCGTCGAGTTTCCTAC 60.120 47.826 20.37 0.00 0.00 3.18
2114 2571 1.457346 TCCTCGTCGAGTTTCCTACC 58.543 55.000 20.37 0.00 0.00 3.18
2115 2572 0.098376 CCTCGTCGAGTTTCCTACCG 59.902 60.000 20.37 0.00 0.00 4.02
2116 2573 1.081892 CTCGTCGAGTTTCCTACCGA 58.918 55.000 14.27 0.00 0.00 4.69
2117 2574 1.466167 CTCGTCGAGTTTCCTACCGAA 59.534 52.381 14.27 0.00 33.38 4.30
2118 2575 1.879380 TCGTCGAGTTTCCTACCGAAA 59.121 47.619 0.00 0.00 38.16 3.46
2119 2576 2.489329 TCGTCGAGTTTCCTACCGAAAT 59.511 45.455 0.00 0.00 42.38 2.17
2120 2577 2.597305 CGTCGAGTTTCCTACCGAAATG 59.403 50.000 0.00 0.00 42.38 2.32
2121 2578 2.928116 GTCGAGTTTCCTACCGAAATGG 59.072 50.000 0.00 0.00 42.38 3.16
2122 2579 2.093869 TCGAGTTTCCTACCGAAATGGG 60.094 50.000 0.00 0.00 42.38 4.00
2123 2580 2.014857 GAGTTTCCTACCGAAATGGGC 58.985 52.381 0.00 0.00 42.38 5.36
2124 2581 1.353022 AGTTTCCTACCGAAATGGGCA 59.647 47.619 0.00 0.00 42.38 5.36
2125 2582 2.164338 GTTTCCTACCGAAATGGGCAA 58.836 47.619 0.00 0.00 42.38 4.52
2126 2583 2.122783 TTCCTACCGAAATGGGCAAG 57.877 50.000 0.00 0.00 44.64 4.01
2127 2584 0.393808 TCCTACCGAAATGGGCAAGC 60.394 55.000 0.00 0.00 44.64 4.01
2128 2585 0.679640 CCTACCGAAATGGGCAAGCA 60.680 55.000 0.00 0.00 44.64 3.91
2129 2586 0.451783 CTACCGAAATGGGCAAGCAC 59.548 55.000 0.00 0.00 44.64 4.40
2130 2587 0.250945 TACCGAAATGGGCAAGCACA 60.251 50.000 0.00 0.00 44.64 4.57
2131 2588 1.080569 CCGAAATGGGCAAGCACAC 60.081 57.895 0.00 0.00 29.15 3.82
2132 2589 1.659233 CGAAATGGGCAAGCACACA 59.341 52.632 0.00 0.00 29.15 3.72
2133 2590 0.244450 CGAAATGGGCAAGCACACAT 59.756 50.000 0.00 0.00 29.15 3.21
2134 2591 1.337074 CGAAATGGGCAAGCACACATT 60.337 47.619 0.00 0.00 35.24 2.71
2135 2592 2.094803 CGAAATGGGCAAGCACACATTA 60.095 45.455 0.00 0.00 33.54 1.90
2136 2593 3.613671 CGAAATGGGCAAGCACACATTAA 60.614 43.478 0.00 0.00 33.54 1.40
2137 2594 3.317603 AATGGGCAAGCACACATTAAC 57.682 42.857 0.00 0.00 32.25 2.01
2138 2595 0.965439 TGGGCAAGCACACATTAACC 59.035 50.000 0.00 0.00 0.00 2.85
2139 2596 0.965439 GGGCAAGCACACATTAACCA 59.035 50.000 0.00 0.00 0.00 3.67
2140 2597 1.342819 GGGCAAGCACACATTAACCAA 59.657 47.619 0.00 0.00 0.00 3.67
2141 2598 2.224161 GGGCAAGCACACATTAACCAAA 60.224 45.455 0.00 0.00 0.00 3.28
2142 2599 3.059166 GGCAAGCACACATTAACCAAAG 58.941 45.455 0.00 0.00 0.00 2.77
2143 2600 2.476241 GCAAGCACACATTAACCAAAGC 59.524 45.455 0.00 0.00 0.00 3.51
2144 2601 3.799917 GCAAGCACACATTAACCAAAGCT 60.800 43.478 0.00 0.00 0.00 3.74
2145 2602 4.558496 GCAAGCACACATTAACCAAAGCTA 60.558 41.667 0.00 0.00 0.00 3.32
2146 2603 5.156355 CAAGCACACATTAACCAAAGCTAG 58.844 41.667 0.00 0.00 0.00 3.42
2147 2604 3.191371 AGCACACATTAACCAAAGCTAGC 59.809 43.478 6.62 6.62 0.00 3.42
2148 2605 3.057596 GCACACATTAACCAAAGCTAGCA 60.058 43.478 18.83 0.00 0.00 3.49
2149 2606 4.475944 CACACATTAACCAAAGCTAGCAC 58.524 43.478 18.83 0.00 0.00 4.40
2150 2607 4.216257 CACACATTAACCAAAGCTAGCACT 59.784 41.667 18.83 0.00 0.00 4.40
2151 2608 4.455877 ACACATTAACCAAAGCTAGCACTC 59.544 41.667 18.83 0.00 0.00 3.51
2152 2609 4.697352 CACATTAACCAAAGCTAGCACTCT 59.303 41.667 18.83 0.00 0.00 3.24
2153 2610 5.182001 CACATTAACCAAAGCTAGCACTCTT 59.818 40.000 18.83 0.00 0.00 2.85
2154 2611 5.770162 ACATTAACCAAAGCTAGCACTCTTT 59.230 36.000 18.83 5.64 33.20 2.52
2155 2612 5.941948 TTAACCAAAGCTAGCACTCTTTC 57.058 39.130 18.83 0.00 30.79 2.62
2156 2613 3.778954 ACCAAAGCTAGCACTCTTTCT 57.221 42.857 18.83 0.00 30.79 2.52
2157 2614 4.092116 ACCAAAGCTAGCACTCTTTCTT 57.908 40.909 18.83 0.00 30.79 2.52
2158 2615 5.228945 ACCAAAGCTAGCACTCTTTCTTA 57.771 39.130 18.83 0.00 30.79 2.10
2159 2616 5.621193 ACCAAAGCTAGCACTCTTTCTTAA 58.379 37.500 18.83 0.00 30.79 1.85
2160 2617 6.062095 ACCAAAGCTAGCACTCTTTCTTAAA 58.938 36.000 18.83 0.00 30.79 1.52
2161 2618 6.546034 ACCAAAGCTAGCACTCTTTCTTAAAA 59.454 34.615 18.83 0.00 30.79 1.52
2162 2619 7.231519 ACCAAAGCTAGCACTCTTTCTTAAAAT 59.768 33.333 18.83 0.00 30.79 1.82
2163 2620 7.752686 CCAAAGCTAGCACTCTTTCTTAAAATC 59.247 37.037 18.83 0.00 30.79 2.17
2164 2621 6.993786 AGCTAGCACTCTTTCTTAAAATCC 57.006 37.500 18.83 0.00 0.00 3.01
2165 2622 6.716284 AGCTAGCACTCTTTCTTAAAATCCT 58.284 36.000 18.83 0.00 0.00 3.24
2166 2623 7.852263 AGCTAGCACTCTTTCTTAAAATCCTA 58.148 34.615 18.83 0.00 0.00 2.94
2167 2624 8.322091 AGCTAGCACTCTTTCTTAAAATCCTAA 58.678 33.333 18.83 0.00 0.00 2.69
2168 2625 8.391859 GCTAGCACTCTTTCTTAAAATCCTAAC 58.608 37.037 10.63 0.00 0.00 2.34
2169 2626 9.660180 CTAGCACTCTTTCTTAAAATCCTAACT 57.340 33.333 0.00 0.00 0.00 2.24
2170 2627 8.329203 AGCACTCTTTCTTAAAATCCTAACTG 57.671 34.615 0.00 0.00 0.00 3.16
2171 2628 7.939588 AGCACTCTTTCTTAAAATCCTAACTGT 59.060 33.333 0.00 0.00 0.00 3.55
2172 2629 9.216117 GCACTCTTTCTTAAAATCCTAACTGTA 57.784 33.333 0.00 0.00 0.00 2.74
2178 2635 9.856162 TTTCTTAAAATCCTAACTGTAACTGGT 57.144 29.630 0.00 0.00 0.00 4.00
2179 2636 9.856162 TTCTTAAAATCCTAACTGTAACTGGTT 57.144 29.630 0.00 0.00 0.00 3.67
2180 2637 9.280174 TCTTAAAATCCTAACTGTAACTGGTTG 57.720 33.333 0.00 0.00 0.00 3.77
2181 2638 9.280174 CTTAAAATCCTAACTGTAACTGGTTGA 57.720 33.333 0.00 0.00 0.00 3.18
2182 2639 9.629878 TTAAAATCCTAACTGTAACTGGTTGAA 57.370 29.630 0.00 0.00 0.00 2.69
2183 2640 7.506328 AAATCCTAACTGTAACTGGTTGAAC 57.494 36.000 0.00 0.00 0.00 3.18
2184 2641 5.881923 TCCTAACTGTAACTGGTTGAACT 57.118 39.130 0.00 0.00 0.00 3.01
2185 2642 6.982160 TCCTAACTGTAACTGGTTGAACTA 57.018 37.500 0.00 0.00 0.00 2.24
2186 2643 6.752168 TCCTAACTGTAACTGGTTGAACTAC 58.248 40.000 0.00 0.00 0.00 2.73
2187 2644 6.552350 TCCTAACTGTAACTGGTTGAACTACT 59.448 38.462 0.00 0.00 0.00 2.57
2188 2645 6.645415 CCTAACTGTAACTGGTTGAACTACTG 59.355 42.308 0.00 0.00 0.00 2.74
2189 2646 4.377897 ACTGTAACTGGTTGAACTACTGC 58.622 43.478 0.00 0.00 0.00 4.40
2190 2647 3.735591 TGTAACTGGTTGAACTACTGCC 58.264 45.455 0.00 0.00 0.00 4.85
2191 2648 3.134985 TGTAACTGGTTGAACTACTGCCA 59.865 43.478 0.00 0.00 0.00 4.92
2193 2650 2.550830 CTGGTTGAACTACTGCCAGT 57.449 50.000 1.54 1.54 41.15 4.00
2194 2651 2.417719 CTGGTTGAACTACTGCCAGTC 58.582 52.381 0.00 0.00 41.15 3.51
2195 2652 1.071699 TGGTTGAACTACTGCCAGTCC 59.928 52.381 0.00 0.00 0.00 3.85
2196 2653 1.071699 GGTTGAACTACTGCCAGTCCA 59.928 52.381 0.00 0.00 0.00 4.02
2271 3012 7.080099 CGCATTCATAGCTAATAATTGCAGTT 58.920 34.615 15.03 0.00 0.00 3.16
2422 3163 8.786898 TGCCTTGCTCTGATAATTGATAATTAC 58.213 33.333 0.00 0.00 36.27 1.89
2485 3226 6.540438 TGTAGAAATGTAACCTCTCGGAAT 57.460 37.500 0.00 0.00 0.00 3.01
2543 3284 9.982291 AGTACTGTTAACAATGCATAAAATACG 57.018 29.630 10.03 0.00 0.00 3.06
2558 3299 8.260550 GCATAAAATACGTTTAGAGAAGAGACG 58.739 37.037 0.00 0.00 35.16 4.18
2565 3306 6.675987 ACGTTTAGAGAAGAGACGTTACAAT 58.324 36.000 0.00 0.00 43.53 2.71
2599 3342 6.774656 GTGGGTCAAATGATTCTCTATCCATT 59.225 38.462 0.00 0.00 31.87 3.16
2690 3435 1.546961 TCGACTTTGTCTCTCCCCTC 58.453 55.000 0.00 0.00 0.00 4.30
2791 6014 5.754782 TGATAAGATATGTGTGGCCTTGTT 58.245 37.500 3.32 0.00 0.00 2.83
2835 6058 5.427157 TGTTTGCCAGATTATCTACCTACCA 59.573 40.000 0.00 0.00 0.00 3.25
2962 6192 5.163141 TGTTTTCTGGGTAGGAACATGAAGA 60.163 40.000 0.00 0.00 30.71 2.87
3130 6360 2.084546 CCGCTTAAGAACTGGGGAAAG 58.915 52.381 6.67 0.00 36.10 2.62
3161 6391 5.542779 CTGGTAAGTAGCTGACAGAACTTT 58.457 41.667 21.61 11.03 34.23 2.66
3273 6510 5.302568 AGTCTTGCTTCCATGATGAAAACAA 59.697 36.000 0.00 0.00 0.00 2.83
3276 6513 7.172019 GTCTTGCTTCCATGATGAAAACAAATT 59.828 33.333 0.00 0.00 0.00 1.82
3277 6514 6.788684 TGCTTCCATGATGAAAACAAATTG 57.211 33.333 0.00 0.00 0.00 2.32
3278 6515 5.179742 TGCTTCCATGATGAAAACAAATTGC 59.820 36.000 0.00 0.00 0.00 3.56
3280 6517 6.619874 GCTTCCATGATGAAAACAAATTGCTG 60.620 38.462 0.00 0.00 0.00 4.41
3282 6519 6.703319 TCCATGATGAAAACAAATTGCTGAT 58.297 32.000 0.00 0.00 0.00 2.90
3283 6520 6.814644 TCCATGATGAAAACAAATTGCTGATC 59.185 34.615 0.00 0.00 0.00 2.92
3284 6521 6.036735 CCATGATGAAAACAAATTGCTGATCC 59.963 38.462 0.00 0.00 0.00 3.36
3287 6524 7.838884 TGATGAAAACAAATTGCTGATCCATA 58.161 30.769 0.00 0.00 0.00 2.74
3375 6635 5.651576 TGTGCATTTATGGTGCTAGATTTGA 59.348 36.000 0.00 0.00 42.92 2.69
3376 6636 6.321945 TGTGCATTTATGGTGCTAGATTTGAT 59.678 34.615 0.00 0.00 42.92 2.57
3394 6655 6.877611 TTTGATTTAACCTGTGTCCTCTTC 57.122 37.500 0.00 0.00 0.00 2.87
3478 6739 1.155664 AAATTCCCTTCCCCAGGCCT 61.156 55.000 0.00 0.00 42.29 5.19
3516 6777 2.543777 TGAGCACTTGGTACACCTTC 57.456 50.000 0.00 0.00 39.29 3.46
3558 6821 6.873605 TGAGTGATTGTGGTAGACATTTACTG 59.126 38.462 0.00 0.00 35.83 2.74
3807 7123 3.126000 CCGCATCTCTTTTCACCTCTTTC 59.874 47.826 0.00 0.00 0.00 2.62
3899 7224 2.192608 GACCTGCTGCCTTTCGCTTG 62.193 60.000 0.00 0.00 38.78 4.01
3924 7254 4.856115 GCTTGATGCTAAGACTTGTCTC 57.144 45.455 3.58 0.00 38.95 3.36
4024 7354 2.609459 AGTGCTAAGCGGAAATGATTCG 59.391 45.455 0.00 0.00 36.36 3.34
4131 7461 8.839310 TTTCATGGTTTCTTTTGAAGTTTGAA 57.161 26.923 0.00 0.00 39.88 2.69
4415 7752 2.076863 GCTTGCGTACTTTGAGTGGAT 58.923 47.619 0.00 0.00 0.00 3.41
4456 7793 4.603985 CACGTCACTGTGTACTTCTAACA 58.396 43.478 7.79 0.00 35.12 2.41
4483 7820 1.207593 GATGCACCACAACTCACGC 59.792 57.895 0.00 0.00 0.00 5.34
4484 7821 2.498761 GATGCACCACAACTCACGCG 62.499 60.000 3.53 3.53 0.00 6.01
4498 7836 4.493747 CGCGAAGGAGACCCGTCC 62.494 72.222 0.00 0.00 37.62 4.79
4500 7838 2.749044 CGAAGGAGACCCGTCCGA 60.749 66.667 0.00 0.00 42.05 4.55
4506 7844 2.986306 GAGACCCGTCCGAAAGCGA 61.986 63.158 0.00 0.00 40.82 4.93
4510 7848 2.048503 CCGTCCGAAAGCGAGGTT 60.049 61.111 0.00 0.00 40.82 3.50
4522 7860 3.773117 CGAGGTTCGCAAGCAATTT 57.227 47.368 0.00 0.00 31.14 1.82
4529 7867 3.120385 GCAAGCAATTTGGCGGGC 61.120 61.111 0.00 0.00 39.27 6.13
4531 7869 2.988684 AAGCAATTTGGCGGGCGA 60.989 55.556 0.00 0.00 39.27 5.54
4532 7870 2.350458 AAGCAATTTGGCGGGCGAT 61.350 52.632 0.00 0.00 39.27 4.58
4533 7871 1.887344 AAGCAATTTGGCGGGCGATT 61.887 50.000 0.00 0.00 39.27 3.34
4534 7872 1.447663 GCAATTTGGCGGGCGATTT 60.448 52.632 0.00 0.00 0.00 2.17
4535 7873 1.018752 GCAATTTGGCGGGCGATTTT 61.019 50.000 0.00 0.00 0.00 1.82
4536 7874 0.720590 CAATTTGGCGGGCGATTTTG 59.279 50.000 0.00 0.00 0.00 2.44
4537 7875 0.605589 AATTTGGCGGGCGATTTTGA 59.394 45.000 0.00 0.00 0.00 2.69
4538 7876 0.173255 ATTTGGCGGGCGATTTTGAG 59.827 50.000 0.00 0.00 0.00 3.02
4539 7877 1.872197 TTTGGCGGGCGATTTTGAGG 61.872 55.000 0.00 0.00 0.00 3.86
4540 7878 2.437716 GGCGGGCGATTTTGAGGA 60.438 61.111 0.00 0.00 0.00 3.71
4541 7879 2.761195 GGCGGGCGATTTTGAGGAC 61.761 63.158 0.00 0.00 0.00 3.85
4542 7880 2.761195 GCGGGCGATTTTGAGGACC 61.761 63.158 0.00 0.00 0.00 4.46
4543 7881 2.112815 CGGGCGATTTTGAGGACCC 61.113 63.158 0.00 0.00 0.00 4.46
4544 7882 2.112815 GGGCGATTTTGAGGACCCG 61.113 63.158 0.00 0.00 0.00 5.28
4545 7883 1.078708 GGCGATTTTGAGGACCCGA 60.079 57.895 0.00 0.00 0.00 5.14
4546 7884 0.675522 GGCGATTTTGAGGACCCGAA 60.676 55.000 0.00 0.00 0.00 4.30
4547 7885 1.161843 GCGATTTTGAGGACCCGAAA 58.838 50.000 0.00 0.00 0.00 3.46
4548 7886 1.135774 GCGATTTTGAGGACCCGAAAC 60.136 52.381 0.00 0.00 0.00 2.78
4549 7887 1.467342 CGATTTTGAGGACCCGAAACC 59.533 52.381 0.00 0.00 0.00 3.27
4550 7888 2.791655 GATTTTGAGGACCCGAAACCT 58.208 47.619 0.00 0.00 39.41 3.50
4578 7916 1.052124 AGGACCCGAAACCTCACACA 61.052 55.000 0.00 0.00 0.00 3.72
4610 7949 2.202570 CGTAAGGGAGCACGACGG 60.203 66.667 0.00 0.00 40.56 4.79
4618 7957 1.153628 GAGCACGACGGCTATGGTT 60.154 57.895 10.23 0.00 45.99 3.67
4670 8009 6.075280 AGACGAAAACAATGCGTGTATAAAC 58.925 36.000 0.00 0.00 40.60 2.01
4704 8043 1.475930 GGCTGTCTTGGAGGCCTAATC 60.476 57.143 4.42 0.00 41.20 1.75
4736 8075 9.654663 AACAGTACTCTTCATACAAAATCCTAC 57.345 33.333 0.00 0.00 0.00 3.18
4755 8094 7.692460 TCCTACTACTTCGAACATAACTTCA 57.308 36.000 0.00 0.00 0.00 3.02
4769 8108 1.110442 ACTTCAGCCCTCGAGATGAG 58.890 55.000 15.71 10.82 44.83 2.90
4784 8123 0.248565 ATGAGATCGGATGGCGATGG 59.751 55.000 0.00 0.00 0.00 3.51
4807 8146 4.462483 GCCCAAACTCCAAAGATGTTCATA 59.538 41.667 0.00 0.00 0.00 2.15
4814 8153 6.406370 ACTCCAAAGATGTTCATATCGACAA 58.594 36.000 0.00 0.00 32.33 3.18
4815 8154 7.050377 ACTCCAAAGATGTTCATATCGACAAT 58.950 34.615 0.00 0.00 32.33 2.71
4816 8155 8.204160 ACTCCAAAGATGTTCATATCGACAATA 58.796 33.333 0.00 0.00 32.33 1.90
4817 8156 9.212641 CTCCAAAGATGTTCATATCGACAATAT 57.787 33.333 0.00 0.00 32.33 1.28
4818 8157 8.992073 TCCAAAGATGTTCATATCGACAATATG 58.008 33.333 0.00 0.00 45.92 1.78
4852 8191 5.152623 TGTAGGTCACTTCTCCATTTGAG 57.847 43.478 0.00 0.00 42.90 3.02
4867 8206 9.527157 TCTCCATTTGAGGACATGTTAATTAAA 57.473 29.630 0.00 0.00 41.76 1.52
4868 8207 9.573133 CTCCATTTGAGGACATGTTAATTAAAC 57.427 33.333 0.00 0.00 37.45 2.01
4943 8288 6.159293 TGTGTGCCGAAAAATAATTTGCATA 58.841 32.000 0.00 0.00 30.62 3.14
4944 8289 6.309980 TGTGTGCCGAAAAATAATTTGCATAG 59.690 34.615 0.00 0.00 30.62 2.23
4972 8322 3.232213 TCTAAGCACGAACACTCCATC 57.768 47.619 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
224 225 7.113658 TGTTTGCAAAGGGAAAAGTACAATA 57.886 32.000 13.26 0.00 36.03 1.90
290 594 3.632604 AGACTCTCAAACAGACGAGTTCA 59.367 43.478 0.00 0.00 35.94 3.18
362 667 2.493675 TGAGAGTACATGACAGGAGCAC 59.506 50.000 0.00 0.00 0.00 4.40
383 688 5.887598 TCTGCATGCTTAACTATTGTTGGAT 59.112 36.000 20.33 0.00 37.59 3.41
567 986 9.814899 ATGAACAACATAATTTGTTTGACTTGA 57.185 25.926 2.94 0.00 46.51 3.02
688 1110 3.007182 CCAGCCACACATTCCTCAAATTT 59.993 43.478 0.00 0.00 0.00 1.82
698 1139 2.765969 CCCCTCCAGCCACACATT 59.234 61.111 0.00 0.00 0.00 2.71
734 1177 2.000290 TCCCCCTCTTCCATCCAATT 58.000 50.000 0.00 0.00 0.00 2.32
855 1302 4.161295 CGCTCGCCTGATTCCCCA 62.161 66.667 0.00 0.00 0.00 4.96
935 1382 1.903183 AGGGAAGTGGAGCAGTCTTAC 59.097 52.381 0.00 0.00 0.00 2.34
1485 1932 6.598753 TCACACTACAAACTTGAGTTTAGC 57.401 37.500 8.66 0.00 45.54 3.09
1623 2077 6.878923 TGACGATGTTCTCAAAATCATAGGTT 59.121 34.615 0.00 0.00 0.00 3.50
1796 2253 3.119884 CGCAGTTGTGAGCCAATCATTTA 60.120 43.478 0.00 0.00 40.92 1.40
1809 2266 1.396996 GGGCTGTATTACGCAGTTGTG 59.603 52.381 11.03 0.00 37.78 3.33
1941 2398 1.007849 GCGTGTGCATTTCCCGTTT 60.008 52.632 0.00 0.00 42.15 3.60
1942 2399 1.452145 AAGCGTGTGCATTTCCCGTT 61.452 50.000 0.00 0.00 46.23 4.44
1943 2400 1.852067 GAAGCGTGTGCATTTCCCGT 61.852 55.000 0.00 0.00 46.23 5.28
1944 2401 1.154225 GAAGCGTGTGCATTTCCCG 60.154 57.895 0.00 0.00 46.23 5.14
1945 2402 1.448985 TAGAAGCGTGTGCATTTCCC 58.551 50.000 0.00 0.00 46.23 3.97
1946 2403 3.764885 ATTAGAAGCGTGTGCATTTCC 57.235 42.857 0.00 0.00 46.23 3.13
1947 2404 4.974591 AGAATTAGAAGCGTGTGCATTTC 58.025 39.130 0.00 0.00 46.23 2.17
1948 2405 6.494893 TTAGAATTAGAAGCGTGTGCATTT 57.505 33.333 0.00 0.00 46.23 2.32
1949 2406 6.494893 TTTAGAATTAGAAGCGTGTGCATT 57.505 33.333 0.00 0.00 46.23 3.56
1950 2407 6.683974 ATTTAGAATTAGAAGCGTGTGCAT 57.316 33.333 0.00 0.00 46.23 3.96
1951 2408 6.494893 AATTTAGAATTAGAAGCGTGTGCA 57.505 33.333 0.00 0.00 46.23 4.57
1952 2409 6.629252 GCTAATTTAGAATTAGAAGCGTGTGC 59.371 38.462 19.37 3.40 36.24 4.57
1953 2410 7.684670 TGCTAATTTAGAATTAGAAGCGTGTG 58.315 34.615 19.37 0.00 34.43 3.82
1954 2411 7.843490 TGCTAATTTAGAATTAGAAGCGTGT 57.157 32.000 19.37 0.00 34.43 4.49
1973 2430 9.515226 ACCTTCAGTAACTTGAAATAATGCTAA 57.485 29.630 0.00 0.00 36.69 3.09
1974 2431 9.515226 AACCTTCAGTAACTTGAAATAATGCTA 57.485 29.630 0.00 0.00 36.69 3.49
1975 2432 8.299570 CAACCTTCAGTAACTTGAAATAATGCT 58.700 33.333 0.00 0.00 36.69 3.79
1976 2433 8.082242 ACAACCTTCAGTAACTTGAAATAATGC 58.918 33.333 0.00 0.00 36.69 3.56
1979 2436 9.616156 TGTACAACCTTCAGTAACTTGAAATAA 57.384 29.630 0.00 0.00 36.69 1.40
1980 2437 9.787435 ATGTACAACCTTCAGTAACTTGAAATA 57.213 29.630 0.00 0.00 36.69 1.40
1981 2438 8.567948 CATGTACAACCTTCAGTAACTTGAAAT 58.432 33.333 0.00 0.00 36.69 2.17
1982 2439 7.012894 CCATGTACAACCTTCAGTAACTTGAAA 59.987 37.037 0.00 0.00 36.69 2.69
1983 2440 6.485313 CCATGTACAACCTTCAGTAACTTGAA 59.515 38.462 0.00 0.00 35.83 2.69
1984 2441 5.995282 CCATGTACAACCTTCAGTAACTTGA 59.005 40.000 0.00 0.00 0.00 3.02
1985 2442 5.181245 CCCATGTACAACCTTCAGTAACTTG 59.819 44.000 0.00 0.00 0.00 3.16
1986 2443 5.072600 TCCCATGTACAACCTTCAGTAACTT 59.927 40.000 0.00 0.00 0.00 2.66
1987 2444 4.595781 TCCCATGTACAACCTTCAGTAACT 59.404 41.667 0.00 0.00 0.00 2.24
1988 2445 4.901868 TCCCATGTACAACCTTCAGTAAC 58.098 43.478 0.00 0.00 0.00 2.50
1989 2446 5.570205 TTCCCATGTACAACCTTCAGTAA 57.430 39.130 0.00 0.00 0.00 2.24
1990 2447 5.249622 TGATTCCCATGTACAACCTTCAGTA 59.750 40.000 0.00 0.00 0.00 2.74
1991 2448 4.042809 TGATTCCCATGTACAACCTTCAGT 59.957 41.667 0.00 0.00 0.00 3.41
1992 2449 4.588899 TGATTCCCATGTACAACCTTCAG 58.411 43.478 0.00 0.00 0.00 3.02
1993 2450 4.567537 CCTGATTCCCATGTACAACCTTCA 60.568 45.833 0.00 0.00 0.00 3.02
1994 2451 3.947834 CCTGATTCCCATGTACAACCTTC 59.052 47.826 0.00 0.00 0.00 3.46
1995 2452 3.333680 ACCTGATTCCCATGTACAACCTT 59.666 43.478 0.00 0.00 0.00 3.50
1996 2453 2.919602 ACCTGATTCCCATGTACAACCT 59.080 45.455 0.00 0.00 0.00 3.50
1997 2454 3.366052 ACCTGATTCCCATGTACAACC 57.634 47.619 0.00 0.00 0.00 3.77
1998 2455 5.885912 ACATAACCTGATTCCCATGTACAAC 59.114 40.000 0.00 0.00 0.00 3.32
1999 2456 5.885352 CACATAACCTGATTCCCATGTACAA 59.115 40.000 0.00 0.00 0.00 2.41
2000 2457 5.436175 CACATAACCTGATTCCCATGTACA 58.564 41.667 0.00 0.00 0.00 2.90
2001 2458 4.275936 GCACATAACCTGATTCCCATGTAC 59.724 45.833 0.00 0.00 0.00 2.90
2002 2459 4.165950 AGCACATAACCTGATTCCCATGTA 59.834 41.667 0.00 0.00 0.00 2.29
2003 2460 3.053395 AGCACATAACCTGATTCCCATGT 60.053 43.478 0.00 0.00 0.00 3.21
2004 2461 3.559069 AGCACATAACCTGATTCCCATG 58.441 45.455 0.00 0.00 0.00 3.66
2005 2462 3.959495 AGCACATAACCTGATTCCCAT 57.041 42.857 0.00 0.00 0.00 4.00
2006 2463 4.853468 TTAGCACATAACCTGATTCCCA 57.147 40.909 0.00 0.00 0.00 4.37
2007 2464 7.665559 TGATTATTAGCACATAACCTGATTCCC 59.334 37.037 0.00 0.00 0.00 3.97
2008 2465 8.621532 TGATTATTAGCACATAACCTGATTCC 57.378 34.615 0.00 0.00 0.00 3.01
2009 2466 9.494271 TCTGATTATTAGCACATAACCTGATTC 57.506 33.333 0.00 0.00 0.00 2.52
2060 2517 9.685276 ACAAAATGAATACACAGGATCATCTAA 57.315 29.630 0.00 0.00 31.58 2.10
2062 2519 9.113838 GTACAAAATGAATACACAGGATCATCT 57.886 33.333 0.00 0.00 31.58 2.90
2063 2520 8.892723 TGTACAAAATGAATACACAGGATCATC 58.107 33.333 0.00 0.00 31.58 2.92
2064 2521 8.806429 TGTACAAAATGAATACACAGGATCAT 57.194 30.769 0.00 0.00 34.11 2.45
2065 2522 8.100164 TCTGTACAAAATGAATACACAGGATCA 58.900 33.333 0.00 0.00 34.19 2.92
2066 2523 8.391106 GTCTGTACAAAATGAATACACAGGATC 58.609 37.037 0.00 0.00 34.19 3.36
2067 2524 7.882791 TGTCTGTACAAAATGAATACACAGGAT 59.117 33.333 0.00 0.00 34.19 3.24
2068 2525 7.220740 TGTCTGTACAAAATGAATACACAGGA 58.779 34.615 0.00 0.00 34.19 3.86
2069 2526 7.433708 TGTCTGTACAAAATGAATACACAGG 57.566 36.000 0.00 0.00 34.19 4.00
2088 2545 7.107250 TAGGAAACTCGACGAGGATTGTCTG 62.107 48.000 27.39 1.64 44.36 3.51
2089 2546 5.106617 TAGGAAACTCGACGAGGATTGTCT 61.107 45.833 27.39 19.91 44.36 3.41
2090 2547 2.094649 AGGAAACTCGACGAGGATTGTC 60.095 50.000 27.39 15.78 46.25 3.18
2091 2548 1.893801 AGGAAACTCGACGAGGATTGT 59.106 47.619 27.39 5.33 32.90 2.71
2092 2549 2.656560 AGGAAACTCGACGAGGATTG 57.343 50.000 27.39 4.65 32.90 2.67
2093 2550 2.426381 GGTAGGAAACTCGACGAGGATT 59.574 50.000 27.39 20.94 43.67 3.01
2094 2551 2.022934 GGTAGGAAACTCGACGAGGAT 58.977 52.381 27.39 16.08 43.67 3.24
2095 2552 1.457346 GGTAGGAAACTCGACGAGGA 58.543 55.000 27.39 4.09 43.67 3.71
2096 2553 0.098376 CGGTAGGAAACTCGACGAGG 59.902 60.000 27.39 10.77 43.67 4.63
2097 2554 1.081892 TCGGTAGGAAACTCGACGAG 58.918 55.000 22.97 22.97 43.67 4.18
2098 2555 1.522668 TTCGGTAGGAAACTCGACGA 58.477 50.000 0.00 0.00 43.67 4.20
2099 2556 2.336554 TTTCGGTAGGAAACTCGACG 57.663 50.000 0.00 0.00 39.67 5.12
2100 2557 2.928116 CCATTTCGGTAGGAAACTCGAC 59.072 50.000 0.00 0.00 46.81 4.20
2101 2558 2.093869 CCCATTTCGGTAGGAAACTCGA 60.094 50.000 0.00 0.00 46.81 4.04
2102 2559 2.277084 CCCATTTCGGTAGGAAACTCG 58.723 52.381 0.00 0.00 46.81 4.18
2103 2560 2.014857 GCCCATTTCGGTAGGAAACTC 58.985 52.381 0.00 0.00 46.81 3.01
2104 2561 1.353022 TGCCCATTTCGGTAGGAAACT 59.647 47.619 0.00 0.00 46.81 2.66
2105 2562 1.828979 TGCCCATTTCGGTAGGAAAC 58.171 50.000 0.00 0.00 46.81 2.78
2107 2564 1.953311 GCTTGCCCATTTCGGTAGGAA 60.953 52.381 0.00 0.00 0.00 3.36
2108 2565 0.393808 GCTTGCCCATTTCGGTAGGA 60.394 55.000 0.00 0.00 0.00 2.94
2109 2566 0.679640 TGCTTGCCCATTTCGGTAGG 60.680 55.000 0.00 0.00 0.00 3.18
2110 2567 0.451783 GTGCTTGCCCATTTCGGTAG 59.548 55.000 0.00 0.00 0.00 3.18
2111 2568 0.250945 TGTGCTTGCCCATTTCGGTA 60.251 50.000 0.00 0.00 0.00 4.02
2112 2569 1.530419 TGTGCTTGCCCATTTCGGT 60.530 52.632 0.00 0.00 0.00 4.69
2113 2570 1.080569 GTGTGCTTGCCCATTTCGG 60.081 57.895 0.00 0.00 0.00 4.30
2114 2571 0.244450 ATGTGTGCTTGCCCATTTCG 59.756 50.000 0.00 0.00 0.00 3.46
2115 2572 2.460757 AATGTGTGCTTGCCCATTTC 57.539 45.000 0.00 0.00 0.00 2.17
2116 2573 3.556843 GGTTAATGTGTGCTTGCCCATTT 60.557 43.478 7.28 0.00 0.00 2.32
2117 2574 2.028203 GGTTAATGTGTGCTTGCCCATT 60.028 45.455 0.00 0.00 0.00 3.16
2118 2575 1.550072 GGTTAATGTGTGCTTGCCCAT 59.450 47.619 0.00 0.00 0.00 4.00
2119 2576 0.965439 GGTTAATGTGTGCTTGCCCA 59.035 50.000 0.00 0.00 0.00 5.36
2120 2577 0.965439 TGGTTAATGTGTGCTTGCCC 59.035 50.000 0.00 0.00 0.00 5.36
2121 2578 2.810439 TTGGTTAATGTGTGCTTGCC 57.190 45.000 0.00 0.00 0.00 4.52
2122 2579 2.476241 GCTTTGGTTAATGTGTGCTTGC 59.524 45.455 0.00 0.00 0.00 4.01
2123 2580 3.981211 AGCTTTGGTTAATGTGTGCTTG 58.019 40.909 0.00 0.00 0.00 4.01
2124 2581 4.321230 GCTAGCTTTGGTTAATGTGTGCTT 60.321 41.667 7.70 0.00 0.00 3.91
2125 2582 3.191371 GCTAGCTTTGGTTAATGTGTGCT 59.809 43.478 7.70 0.00 0.00 4.40
2126 2583 3.057596 TGCTAGCTTTGGTTAATGTGTGC 60.058 43.478 17.23 0.00 0.00 4.57
2127 2584 4.216257 AGTGCTAGCTTTGGTTAATGTGTG 59.784 41.667 17.23 0.00 0.00 3.82
2128 2585 4.398319 AGTGCTAGCTTTGGTTAATGTGT 58.602 39.130 17.23 0.00 0.00 3.72
2129 2586 4.697352 AGAGTGCTAGCTTTGGTTAATGTG 59.303 41.667 17.23 0.00 0.00 3.21
2130 2587 4.911390 AGAGTGCTAGCTTTGGTTAATGT 58.089 39.130 17.23 0.00 0.00 2.71
2131 2588 5.886960 AAGAGTGCTAGCTTTGGTTAATG 57.113 39.130 17.23 0.00 0.00 1.90
2132 2589 6.241645 AGAAAGAGTGCTAGCTTTGGTTAAT 58.758 36.000 17.23 0.00 34.69 1.40
2133 2590 5.621193 AGAAAGAGTGCTAGCTTTGGTTAA 58.379 37.500 17.23 0.00 34.69 2.01
2134 2591 5.228945 AGAAAGAGTGCTAGCTTTGGTTA 57.771 39.130 17.23 0.00 34.69 2.85
2135 2592 4.092116 AGAAAGAGTGCTAGCTTTGGTT 57.908 40.909 17.23 4.80 34.69 3.67
2136 2593 3.778954 AGAAAGAGTGCTAGCTTTGGT 57.221 42.857 17.23 0.00 34.69 3.67
2137 2594 6.560253 TTTAAGAAAGAGTGCTAGCTTTGG 57.440 37.500 17.23 0.00 34.69 3.28
2138 2595 7.752686 GGATTTTAAGAAAGAGTGCTAGCTTTG 59.247 37.037 17.23 0.00 34.69 2.77
2139 2596 7.667635 AGGATTTTAAGAAAGAGTGCTAGCTTT 59.332 33.333 17.23 7.86 37.07 3.51
2140 2597 7.171653 AGGATTTTAAGAAAGAGTGCTAGCTT 58.828 34.615 17.23 3.95 0.00 3.74
2141 2598 6.716284 AGGATTTTAAGAAAGAGTGCTAGCT 58.284 36.000 17.23 0.00 0.00 3.32
2142 2599 6.993786 AGGATTTTAAGAAAGAGTGCTAGC 57.006 37.500 8.10 8.10 0.00 3.42
2143 2600 9.660180 AGTTAGGATTTTAAGAAAGAGTGCTAG 57.340 33.333 0.00 0.00 0.00 3.42
2144 2601 9.436957 CAGTTAGGATTTTAAGAAAGAGTGCTA 57.563 33.333 0.00 0.00 0.00 3.49
2145 2602 7.939588 ACAGTTAGGATTTTAAGAAAGAGTGCT 59.060 33.333 0.00 0.00 0.00 4.40
2146 2603 8.100508 ACAGTTAGGATTTTAAGAAAGAGTGC 57.899 34.615 0.00 0.00 0.00 4.40
2152 2609 9.856162 ACCAGTTACAGTTAGGATTTTAAGAAA 57.144 29.630 0.00 0.00 0.00 2.52
2153 2610 9.856162 AACCAGTTACAGTTAGGATTTTAAGAA 57.144 29.630 0.00 0.00 0.00 2.52
2154 2611 9.280174 CAACCAGTTACAGTTAGGATTTTAAGA 57.720 33.333 0.00 0.00 0.00 2.10
2155 2612 9.280174 TCAACCAGTTACAGTTAGGATTTTAAG 57.720 33.333 0.00 0.00 0.00 1.85
2156 2613 9.629878 TTCAACCAGTTACAGTTAGGATTTTAA 57.370 29.630 0.00 0.00 0.00 1.52
2157 2614 9.059260 GTTCAACCAGTTACAGTTAGGATTTTA 57.941 33.333 0.00 0.00 0.00 1.52
2158 2615 7.778382 AGTTCAACCAGTTACAGTTAGGATTTT 59.222 33.333 0.00 0.00 0.00 1.82
2159 2616 7.287810 AGTTCAACCAGTTACAGTTAGGATTT 58.712 34.615 0.00 0.00 0.00 2.17
2160 2617 6.838382 AGTTCAACCAGTTACAGTTAGGATT 58.162 36.000 0.00 0.00 0.00 3.01
2161 2618 6.435292 AGTTCAACCAGTTACAGTTAGGAT 57.565 37.500 0.00 0.00 0.00 3.24
2162 2619 5.881923 AGTTCAACCAGTTACAGTTAGGA 57.118 39.130 0.00 0.00 0.00 2.94
2163 2620 6.645415 CAGTAGTTCAACCAGTTACAGTTAGG 59.355 42.308 0.00 0.00 0.00 2.69
2164 2621 6.145696 GCAGTAGTTCAACCAGTTACAGTTAG 59.854 42.308 0.00 0.00 0.00 2.34
2165 2622 5.987347 GCAGTAGTTCAACCAGTTACAGTTA 59.013 40.000 0.00 0.00 0.00 2.24
2166 2623 4.814771 GCAGTAGTTCAACCAGTTACAGTT 59.185 41.667 0.00 0.00 0.00 3.16
2167 2624 4.377897 GCAGTAGTTCAACCAGTTACAGT 58.622 43.478 0.00 0.00 0.00 3.55
2168 2625 3.746492 GGCAGTAGTTCAACCAGTTACAG 59.254 47.826 0.00 0.00 0.00 2.74
2169 2626 3.134985 TGGCAGTAGTTCAACCAGTTACA 59.865 43.478 0.00 0.00 0.00 2.41
2170 2627 3.735591 TGGCAGTAGTTCAACCAGTTAC 58.264 45.455 0.00 0.00 0.00 2.50
2171 2628 4.002906 CTGGCAGTAGTTCAACCAGTTA 57.997 45.455 6.28 0.00 42.42 2.24
2172 2629 2.851195 CTGGCAGTAGTTCAACCAGTT 58.149 47.619 6.28 0.00 42.42 3.16
2173 2630 2.550830 CTGGCAGTAGTTCAACCAGT 57.449 50.000 6.28 0.00 42.42 4.00
2175 2632 1.071699 GGACTGGCAGTAGTTCAACCA 59.928 52.381 22.11 0.00 0.00 3.67
2176 2633 1.071699 TGGACTGGCAGTAGTTCAACC 59.928 52.381 22.11 15.76 33.30 3.77
2177 2634 2.543777 TGGACTGGCAGTAGTTCAAC 57.456 50.000 22.11 5.88 33.30 3.18
2178 2635 3.569194 TTTGGACTGGCAGTAGTTCAA 57.431 42.857 22.11 18.23 42.84 2.69
2179 2636 3.569194 TTTTGGACTGGCAGTAGTTCA 57.431 42.857 22.11 13.50 34.40 3.18
2180 2637 4.278419 ACAATTTTGGACTGGCAGTAGTTC 59.722 41.667 22.11 7.89 0.00 3.01
2181 2638 4.215109 ACAATTTTGGACTGGCAGTAGTT 58.785 39.130 22.11 5.05 0.00 2.24
2182 2639 3.832527 ACAATTTTGGACTGGCAGTAGT 58.167 40.909 22.11 0.00 0.00 2.73
2183 2640 5.677091 GCATACAATTTTGGACTGGCAGTAG 60.677 44.000 22.11 5.80 0.00 2.57
2184 2641 4.157656 GCATACAATTTTGGACTGGCAGTA 59.842 41.667 22.11 4.56 0.00 2.74
2185 2642 3.056607 GCATACAATTTTGGACTGGCAGT 60.057 43.478 22.26 22.26 0.00 4.40
2186 2643 3.194116 AGCATACAATTTTGGACTGGCAG 59.806 43.478 14.16 14.16 0.00 4.85
2187 2644 3.164268 AGCATACAATTTTGGACTGGCA 58.836 40.909 0.00 0.00 0.00 4.92
2188 2645 3.874392 AGCATACAATTTTGGACTGGC 57.126 42.857 0.00 0.00 0.00 4.85
2189 2646 5.418840 ACCTTAGCATACAATTTTGGACTGG 59.581 40.000 0.00 0.00 0.00 4.00
2190 2647 6.515272 ACCTTAGCATACAATTTTGGACTG 57.485 37.500 0.00 0.00 0.00 3.51
2191 2648 6.719370 TGAACCTTAGCATACAATTTTGGACT 59.281 34.615 0.00 0.00 0.00 3.85
2192 2649 6.919721 TGAACCTTAGCATACAATTTTGGAC 58.080 36.000 0.00 0.00 0.00 4.02
2193 2650 7.531857 TTGAACCTTAGCATACAATTTTGGA 57.468 32.000 0.00 0.00 0.00 3.53
2194 2651 6.311200 GCTTGAACCTTAGCATACAATTTTGG 59.689 38.462 0.00 0.00 37.35 3.28
2195 2652 7.062605 CAGCTTGAACCTTAGCATACAATTTTG 59.937 37.037 0.00 0.00 39.85 2.44
2196 2653 7.092716 CAGCTTGAACCTTAGCATACAATTTT 58.907 34.615 0.00 0.00 39.85 1.82
2392 3133 5.744171 TCAATTATCAGAGCAAGGCAAGTA 58.256 37.500 0.00 0.00 0.00 2.24
2422 3163 6.567321 GCAGCCACTCTATAATTATGCTTGTG 60.567 42.308 8.28 10.64 0.00 3.33
2485 3226 3.228188 ACCACTCCAAAATTCTGCTCA 57.772 42.857 0.00 0.00 0.00 4.26
2561 3302 8.877864 TCATTTGACCCACTAAGAAATATTGT 57.122 30.769 0.00 0.00 0.00 2.71
2565 3306 9.396022 GAGAATCATTTGACCCACTAAGAAATA 57.604 33.333 0.00 0.00 33.17 1.40
2690 3435 8.767478 AACATTTCTTGAATGAAGCCATTAAG 57.233 30.769 5.82 0.00 46.59 1.85
2756 3501 9.857656 ACACATATCTTATCATGAAAATCTGGT 57.142 29.630 0.00 0.00 0.00 4.00
2784 6007 4.627035 GGCTTGATGATTACAAAACAAGGC 59.373 41.667 0.00 0.00 44.04 4.35
2791 6014 4.081406 ACAGCAGGCTTGATGATTACAAA 58.919 39.130 21.73 0.00 43.30 2.83
2962 6192 3.309296 TCTCTCCTTTCTTGGTCTGTGT 58.691 45.455 0.00 0.00 0.00 3.72
3130 6360 0.806492 GCTACTTACCAGCCGCACTC 60.806 60.000 0.00 0.00 32.68 3.51
3273 6510 9.540538 AGTATCTACTAGTATGGATCAGCAATT 57.459 33.333 2.33 0.00 34.13 2.32
3276 6513 8.827758 AGTAGTATCTACTAGTATGGATCAGCA 58.172 37.037 2.33 0.00 39.87 4.41
3277 6514 9.104965 CAGTAGTATCTACTAGTATGGATCAGC 57.895 40.741 2.33 0.00 39.71 4.26
3282 6519 8.942033 TGGAACAGTAGTATCTACTAGTATGGA 58.058 37.037 2.33 0.00 39.71 3.41
3375 6635 5.568620 ACTGAAGAGGACACAGGTTAAAT 57.431 39.130 0.00 0.00 36.17 1.40
3376 6636 5.367945 AACTGAAGAGGACACAGGTTAAA 57.632 39.130 0.00 0.00 36.17 1.52
3394 6655 7.117667 GGTTGGCAGAATTTAACCAAATAACTG 59.882 37.037 8.15 0.00 43.46 3.16
3558 6821 8.632906 TGGCTACAGGTTCTATTATACTCTAC 57.367 38.462 0.00 0.00 0.00 2.59
3650 6923 7.816640 TGAGTGACTAATGCCTTCAAAATTAC 58.183 34.615 0.00 0.00 0.00 1.89
3651 6924 7.994425 TGAGTGACTAATGCCTTCAAAATTA 57.006 32.000 0.00 0.00 0.00 1.40
3652 6925 6.899393 TGAGTGACTAATGCCTTCAAAATT 57.101 33.333 0.00 0.00 0.00 1.82
3653 6926 6.899393 TTGAGTGACTAATGCCTTCAAAAT 57.101 33.333 0.00 0.00 0.00 1.82
3656 6929 5.129634 TGTTTGAGTGACTAATGCCTTCAA 58.870 37.500 0.00 0.00 0.00 2.69
3718 6999 9.743057 CCCACAAATATATCGAAAAGCAATAAA 57.257 29.630 0.00 0.00 0.00 1.40
3719 7000 8.908903 ACCCACAAATATATCGAAAAGCAATAA 58.091 29.630 0.00 0.00 0.00 1.40
3807 7123 5.182380 ACGTGGGTAAAATCAACACATTAGG 59.818 40.000 0.00 0.00 31.79 2.69
3899 7224 5.624281 AGACAAGTCTTAGCATCAAGCTCTC 60.624 44.000 0.00 0.00 43.94 3.20
3924 7254 4.604114 TGCAAGGCAGAGATGTCG 57.396 55.556 0.00 0.00 33.32 4.35
4024 7354 1.583477 GCTGCTGTGCCTTTCTTCC 59.417 57.895 0.00 0.00 0.00 3.46
4131 7461 2.024176 AGCATTTACGAGTCGGCAAT 57.976 45.000 18.30 11.22 0.00 3.56
4279 7615 5.134509 CCCCTCCTTCCCTTCACTTATAATT 59.865 44.000 0.00 0.00 0.00 1.40
4483 7820 1.870055 TTTCGGACGGGTCTCCTTCG 61.870 60.000 0.00 0.00 32.58 3.79
4484 7821 0.108756 CTTTCGGACGGGTCTCCTTC 60.109 60.000 0.00 0.00 0.00 3.46
4506 7844 0.319813 GCCAAATTGCTTGCGAACCT 60.320 50.000 0.00 0.00 33.27 3.50
4510 7848 2.257980 CCGCCAAATTGCTTGCGA 59.742 55.556 14.75 0.00 36.97 5.10
4521 7859 2.339556 CCTCAAAATCGCCCGCCAA 61.340 57.895 0.00 0.00 0.00 4.52
4522 7860 2.749839 CCTCAAAATCGCCCGCCA 60.750 61.111 0.00 0.00 0.00 5.69
4529 7867 1.467342 GGTTTCGGGTCCTCAAAATCG 59.533 52.381 0.00 0.00 0.00 3.34
4531 7869 2.791655 GAGGTTTCGGGTCCTCAAAAT 58.208 47.619 13.06 0.00 46.59 1.82
4532 7870 2.265589 GAGGTTTCGGGTCCTCAAAA 57.734 50.000 13.06 0.00 46.59 2.44
4536 7874 0.618981 AATGGAGGTTTCGGGTCCTC 59.381 55.000 10.62 10.62 46.62 3.71
4537 7875 1.073098 AAATGGAGGTTTCGGGTCCT 58.927 50.000 0.00 0.00 36.70 3.85
4538 7876 1.544246 CAAAATGGAGGTTTCGGGTCC 59.456 52.381 0.00 0.00 0.00 4.46
4539 7877 2.488153 CTCAAAATGGAGGTTTCGGGTC 59.512 50.000 0.00 0.00 0.00 4.46
4540 7878 2.514803 CTCAAAATGGAGGTTTCGGGT 58.485 47.619 0.00 0.00 0.00 5.28
4549 7887 2.488153 GTTTCGGGTCCTCAAAATGGAG 59.512 50.000 0.00 0.00 33.78 3.86
4550 7888 2.510613 GTTTCGGGTCCTCAAAATGGA 58.489 47.619 0.00 0.00 0.00 3.41
4551 7889 1.544246 GGTTTCGGGTCCTCAAAATGG 59.456 52.381 0.00 0.00 0.00 3.16
4552 7890 2.488153 GAGGTTTCGGGTCCTCAAAATG 59.512 50.000 13.06 0.00 46.59 2.32
4592 7930 2.693762 CCGTCGTGCTCCCTTACGA 61.694 63.158 0.00 0.00 45.87 3.43
4593 7931 2.202570 CCGTCGTGCTCCCTTACG 60.203 66.667 0.00 0.00 41.38 3.18
4604 7943 5.603596 TGATATAAAAACCATAGCCGTCGT 58.396 37.500 0.00 0.00 0.00 4.34
4644 7983 1.937223 ACACGCATTGTTTTCGTCTCA 59.063 42.857 0.00 0.00 33.09 3.27
4653 7992 7.644490 TGAGAAAAGTTTATACACGCATTGTT 58.356 30.769 0.00 0.00 39.91 2.83
4670 8009 5.296283 CCAAGACAGCCTCATATGAGAAAAG 59.704 44.000 30.40 19.28 44.74 2.27
4704 8043 0.242825 TGAAGAGTACTGTTCGGCCG 59.757 55.000 22.12 22.12 35.84 6.13
4709 8048 8.779354 AGGATTTTGTATGAAGAGTACTGTTC 57.221 34.615 22.49 22.49 33.92 3.18
4736 8075 4.567159 GGGCTGAAGTTATGTTCGAAGTAG 59.433 45.833 0.00 0.00 0.00 2.57
4755 8094 0.893270 CCGATCTCATCTCGAGGGCT 60.893 60.000 13.56 0.00 42.55 5.19
4784 8123 2.627699 TGAACATCTTTGGAGTTTGGGC 59.372 45.455 0.00 0.00 0.00 5.36
4852 8191 6.919721 TGGCAAGAGTTTAATTAACATGTCC 58.080 36.000 0.00 0.00 39.30 4.02
4898 8243 3.953712 AGTTTTGCCGAAAAATAGGGG 57.046 42.857 0.30 0.00 39.86 4.79
4901 8246 5.556194 GCACACAAGTTTTGCCGAAAAATAG 60.556 40.000 0.30 0.00 39.86 1.73
4903 8248 3.063316 GCACACAAGTTTTGCCGAAAAAT 59.937 39.130 0.30 0.00 39.86 1.82
4972 8322 4.320690 CGTCTAAAAACATGCAAATGACCG 59.679 41.667 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.