Multiple sequence alignment - TraesCS5B01G252200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G252200 chr5B 100.000 6325 0 0 1 6325 434831473 434825149 0.000000e+00 11681
1 TraesCS5B01G252200 chr5B 94.444 450 21 3 821 1266 434922585 434922136 0.000000e+00 689
2 TraesCS5B01G252200 chr5B 87.417 604 54 12 4161 4756 434920617 434920028 0.000000e+00 675
3 TraesCS5B01G252200 chr5B 81.601 712 83 32 4810 5501 434919885 434919202 4.310000e-151 545
4 TraesCS5B01G252200 chr5D 94.352 2833 108 28 2713 5513 367438674 367435862 0.000000e+00 4298
5 TraesCS5B01G252200 chr5D 95.450 945 32 8 1773 2715 367440082 367439147 0.000000e+00 1496
6 TraesCS5B01G252200 chr5D 93.114 668 41 2 792 1454 367441804 367441137 0.000000e+00 974
7 TraesCS5B01G252200 chr5D 88.449 606 60 7 4160 4759 367588772 367588171 0.000000e+00 723
8 TraesCS5B01G252200 chr5D 94.889 450 19 2 821 1266 367590490 367590041 0.000000e+00 701
9 TraesCS5B01G252200 chr5D 80.149 670 68 30 4856 5501 367587994 367587366 2.090000e-119 440
10 TraesCS5B01G252200 chr5D 94.464 289 9 3 1485 1770 367441137 367440853 7.530000e-119 438
11 TraesCS5B01G252200 chr5D 82.424 330 37 18 1430 1742 367589103 367588778 1.050000e-67 268
12 TraesCS5B01G252200 chr5D 85.542 249 19 9 5817 6048 367430917 367430669 1.760000e-60 244
13 TraesCS5B01G252200 chr5D 92.105 152 9 3 5509 5658 367435838 367435688 1.790000e-50 211
14 TraesCS5B01G252200 chr5A 91.720 2657 125 40 3184 5764 469112555 469109918 0.000000e+00 3600
15 TraesCS5B01G252200 chr5A 95.090 611 29 1 806 1416 469113724 469113115 0.000000e+00 961
16 TraesCS5B01G252200 chr5A 88.391 603 59 6 4160 4756 469421946 469421349 0.000000e+00 715
17 TraesCS5B01G252200 chr5A 94.977 438 18 3 830 1264 469423616 469423180 0.000000e+00 684
18 TraesCS5B01G252200 chr5A 83.425 724 81 22 4809 5501 469421207 469420492 2.490000e-178 636
19 TraesCS5B01G252200 chr5A 88.793 464 24 8 792 1245 469491880 469491435 1.550000e-150 544
20 TraesCS5B01G252200 chr5A 93.195 338 16 2 1413 1743 469112993 469112656 2.050000e-134 490
21 TraesCS5B01G252200 chr5A 92.115 279 19 1 830 1105 456294132 456293854 2.140000e-104 390
22 TraesCS5B01G252200 chr5A 79.730 518 78 13 6 497 565492490 565491974 3.630000e-92 350
23 TraesCS5B01G252200 chr5A 82.424 330 37 18 1430 1742 469422277 469421952 1.050000e-67 268
24 TraesCS5B01G252200 chr5A 94.203 138 6 2 5913 6048 469109756 469109619 6.430000e-50 209
25 TraesCS5B01G252200 chr5A 89.109 101 10 1 6142 6241 469109466 469109366 2.390000e-24 124
26 TraesCS5B01G252200 chr7D 80.851 517 74 13 6 497 611665418 611664902 3.580000e-102 383
27 TraesCS5B01G252200 chr7D 81.136 493 68 15 29 496 148121703 148121211 7.740000e-99 372
28 TraesCS5B01G252200 chr7D 80.404 495 69 15 29 497 478799418 478798926 1.010000e-92 351
29 TraesCS5B01G252200 chr7D 79.183 514 82 13 9 497 34675192 34674679 3.650000e-87 333
30 TraesCS5B01G252200 chr7D 74.949 487 88 20 2242 2702 3075815 3076293 6.470000e-45 193
31 TraesCS5B01G252200 chr3D 83.803 426 42 14 2198 2613 135128832 135129240 4.630000e-101 379
32 TraesCS5B01G252200 chr3D 79.151 518 82 14 6 497 16319888 16320405 1.020000e-87 335
33 TraesCS5B01G252200 chr3D 86.307 241 28 5 1961 2198 135126885 135127123 2.260000e-64 257
34 TraesCS5B01G252200 chr3D 89.256 121 10 3 1765 1885 135126733 135126850 1.420000e-31 148
35 TraesCS5B01G252200 chr1D 80.337 534 78 15 6 513 329506688 329507220 4.630000e-101 379
36 TraesCS5B01G252200 chr6B 80.539 519 72 10 6 497 599981721 599981205 7.740000e-99 372
37 TraesCS5B01G252200 chr2B 79.813 535 80 14 6 513 209818468 209817935 1.300000e-96 364
38 TraesCS5B01G252200 chr2B 83.442 308 50 1 191 497 561571058 561570751 1.040000e-72 285
39 TraesCS5B01G252200 chr1B 80.567 494 71 6 29 497 569517069 569517562 2.170000e-94 357
40 TraesCS5B01G252200 chr1B 78.360 573 65 27 2153 2715 348324289 348323766 3.680000e-82 316
41 TraesCS5B01G252200 chr1B 77.889 398 56 11 1784 2173 348330960 348330587 1.070000e-52 219
42 TraesCS5B01G252200 chr2A 80.198 505 72 15 19 497 677114024 677113522 2.810000e-93 353
43 TraesCS5B01G252200 chr3B 79.730 518 79 20 5 497 798552914 798552398 1.010000e-92 351
44 TraesCS5B01G252200 chr3B 79.110 517 83 13 6 497 24390768 24390252 3.650000e-87 333
45 TraesCS5B01G252200 chr4B 79.691 517 80 13 6 497 37870346 37869830 3.630000e-92 350
46 TraesCS5B01G252200 chrUn 80.000 505 73 15 19 497 292875220 292875722 1.310000e-91 348
47 TraesCS5B01G252200 chr4D 76.566 495 110 5 6 496 454420705 454421197 3.760000e-67 267


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G252200 chr5B 434825149 434831473 6324 True 11681.000000 11681 100.000000 1 6325 1 chr5B.!!$R1 6324
1 TraesCS5B01G252200 chr5B 434919202 434922585 3383 True 636.333333 689 87.820667 821 5501 3 chr5B.!!$R2 4680
2 TraesCS5B01G252200 chr5D 367435688 367441804 6116 True 1483.400000 4298 93.897000 792 5658 5 chr5D.!!$R2 4866
3 TraesCS5B01G252200 chr5D 367587366 367590490 3124 True 533.000000 723 86.477750 821 5501 4 chr5D.!!$R3 4680
4 TraesCS5B01G252200 chr5A 469109366 469113724 4358 True 1076.800000 3600 92.663400 806 6241 5 chr5A.!!$R4 5435
5 TraesCS5B01G252200 chr5A 469420492 469423616 3124 True 575.750000 715 87.304250 830 5501 4 chr5A.!!$R5 4671
6 TraesCS5B01G252200 chr5A 565491974 565492490 516 True 350.000000 350 79.730000 6 497 1 chr5A.!!$R3 491
7 TraesCS5B01G252200 chr7D 611664902 611665418 516 True 383.000000 383 80.851000 6 497 1 chr7D.!!$R4 491
8 TraesCS5B01G252200 chr7D 34674679 34675192 513 True 333.000000 333 79.183000 9 497 1 chr7D.!!$R1 488
9 TraesCS5B01G252200 chr3D 16319888 16320405 517 False 335.000000 335 79.151000 6 497 1 chr3D.!!$F1 491
10 TraesCS5B01G252200 chr3D 135126733 135129240 2507 False 261.333333 379 86.455333 1765 2613 3 chr3D.!!$F2 848
11 TraesCS5B01G252200 chr1D 329506688 329507220 532 False 379.000000 379 80.337000 6 513 1 chr1D.!!$F1 507
12 TraesCS5B01G252200 chr6B 599981205 599981721 516 True 372.000000 372 80.539000 6 497 1 chr6B.!!$R1 491
13 TraesCS5B01G252200 chr2B 209817935 209818468 533 True 364.000000 364 79.813000 6 513 1 chr2B.!!$R1 507
14 TraesCS5B01G252200 chr1B 348323766 348324289 523 True 316.000000 316 78.360000 2153 2715 1 chr1B.!!$R1 562
15 TraesCS5B01G252200 chr2A 677113522 677114024 502 True 353.000000 353 80.198000 19 497 1 chr2A.!!$R1 478
16 TraesCS5B01G252200 chr3B 798552398 798552914 516 True 351.000000 351 79.730000 5 497 1 chr3B.!!$R2 492
17 TraesCS5B01G252200 chr3B 24390252 24390768 516 True 333.000000 333 79.110000 6 497 1 chr3B.!!$R1 491
18 TraesCS5B01G252200 chr4B 37869830 37870346 516 True 350.000000 350 79.691000 6 497 1 chr4B.!!$R1 491
19 TraesCS5B01G252200 chrUn 292875220 292875722 502 False 348.000000 348 80.000000 19 497 1 chrUn.!!$F1 478

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 124 0.032952 TGTACTTGTGTCCTCACGCC 59.967 55.0 0.00 0.0 46.49 5.68 F
1268 1301 0.031010 GTATCCTCCACCCCCACTCT 60.031 60.0 0.00 0.0 0.00 3.24 F
1984 3941 0.886490 AGCCTCAAAAGCTGACCACG 60.886 55.0 0.00 0.0 39.69 4.94 F
2463 6135 0.040942 AAGCATGCCCACCCAATGTA 59.959 50.0 15.66 0.0 0.00 2.29 F
2466 6138 0.455410 CATGCCCACCCAATGTAACG 59.545 55.0 0.00 0.0 0.00 3.18 F
3966 8131 0.686769 CCCGGAACCCTACAGCTAGT 60.687 60.0 0.73 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 3885 0.037232 GCTGAGGCACCTAGAAACGT 60.037 55.000 0.00 0.0 38.54 3.99 R
2161 4119 0.318120 TGCATTCGAGAGTGCAGACA 59.682 50.000 17.33 0.0 46.75 3.41 R
3966 8131 0.613260 CCGATCTCACCTCCCAAACA 59.387 55.000 0.00 0.0 0.00 2.83 R
4117 8282 3.581265 AAGGTTTCCACTCCCGTAAAA 57.419 42.857 0.00 0.0 0.00 1.52 R
4318 8483 4.280929 AGCTTCATGTTCCTACCCAAAAAC 59.719 41.667 0.00 0.0 0.00 2.43 R
5808 10252 0.036010 GTAGGCATGTGGACTGCACT 60.036 55.000 2.08 0.0 41.47 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.767759 AATCCTTTCCCAATGAGGCG 58.232 50.000 0.00 0.00 35.39 5.52
25 26 0.035439 TCCTTTCCCAATGAGGCGAC 60.035 55.000 0.00 0.00 35.39 5.19
27 28 1.001393 TTTCCCAATGAGGCGACCC 60.001 57.895 0.00 0.00 35.39 4.46
40 41 0.108520 GCGACCCGTCTTATGGTTGA 60.109 55.000 0.00 0.00 38.14 3.18
59 60 5.221621 GGTTGAGGATGAATTTGGAAACCAA 60.222 40.000 0.00 0.00 42.29 3.67
105 107 1.667830 CGCGACATCCTTGTGGTGT 60.668 57.895 0.00 0.00 37.32 4.16
108 110 1.337823 GCGACATCCTTGTGGTGTACT 60.338 52.381 0.00 0.00 35.79 2.73
119 121 2.159014 TGTGGTGTACTTGTGTCCTCAC 60.159 50.000 0.00 0.00 44.08 3.51
122 124 0.032952 TGTACTTGTGTCCTCACGCC 59.967 55.000 0.00 0.00 46.49 5.68
131 133 4.675029 CCTCACGCCCCGTCGTTT 62.675 66.667 0.00 0.00 41.21 3.60
133 135 3.851845 CTCACGCCCCGTCGTTTCA 62.852 63.158 0.00 0.00 41.21 2.69
191 193 1.676678 TAGTCCAGGAGCGGATGCAC 61.677 60.000 0.00 0.00 46.23 4.57
213 236 2.012937 TTGGAAGACGAAACGTGTGT 57.987 45.000 0.62 0.00 41.37 3.72
216 239 1.593793 GGAAGACGAAACGTGTGTTGC 60.594 52.381 0.62 0.00 41.37 4.17
217 240 1.061421 GAAGACGAAACGTGTGTTGCA 59.939 47.619 0.62 0.00 41.37 4.08
229 252 1.064803 TGTGTTGCATTCGTGGTTGAC 59.935 47.619 0.00 0.00 0.00 3.18
270 293 0.729116 CCTTCGGCGTCTTAGTCGTA 59.271 55.000 6.85 0.00 40.52 3.43
326 349 2.427742 GGTGTTGCCCCGGTTTAAA 58.572 52.632 0.00 0.00 0.00 1.52
329 352 1.614413 GTGTTGCCCCGGTTTAAATCA 59.386 47.619 0.00 0.00 0.00 2.57
332 355 4.082136 GTGTTGCCCCGGTTTAAATCATTA 60.082 41.667 0.00 0.00 0.00 1.90
350 373 7.935338 ATCATTAAATGACAATGATTTCGCC 57.065 32.000 5.03 0.00 46.16 5.54
357 380 4.075682 TGACAATGATTTCGCCTTTGGTA 58.924 39.130 0.00 0.00 0.00 3.25
363 386 1.917872 TTTCGCCTTTGGTAAGCCAT 58.082 45.000 0.00 0.00 45.56 4.40
374 397 1.840635 GGTAAGCCATCTTGGAGGTCT 59.159 52.381 0.00 0.00 40.96 3.85
400 423 2.680312 CTGTATATCAGCGATGGGGG 57.320 55.000 0.00 0.00 37.36 5.40
463 490 0.909133 TGGCTACTCTGATGGTGCCA 60.909 55.000 0.00 0.00 46.59 4.92
464 491 0.253044 GGCTACTCTGATGGTGCCAA 59.747 55.000 0.00 0.00 40.04 4.52
467 494 2.616510 GCTACTCTGATGGTGCCAAAGT 60.617 50.000 0.00 0.35 0.00 2.66
497 524 1.160329 ACGTTGGTGTCAAGCTCAGC 61.160 55.000 0.00 0.00 32.92 4.26
500 527 1.761449 TTGGTGTCAAGCTCAGCAAA 58.239 45.000 14.11 1.53 45.72 3.68
501 528 1.985473 TGGTGTCAAGCTCAGCAAAT 58.015 45.000 0.00 0.00 39.73 2.32
502 529 2.309613 TGGTGTCAAGCTCAGCAAATT 58.690 42.857 0.00 0.00 39.73 1.82
503 530 2.294233 TGGTGTCAAGCTCAGCAAATTC 59.706 45.455 0.00 0.00 39.73 2.17
504 531 2.555757 GGTGTCAAGCTCAGCAAATTCT 59.444 45.455 0.00 0.00 34.09 2.40
505 532 3.005155 GGTGTCAAGCTCAGCAAATTCTT 59.995 43.478 0.00 0.00 34.09 2.52
506 533 4.225208 GTGTCAAGCTCAGCAAATTCTTC 58.775 43.478 0.00 0.00 0.00 2.87
507 534 3.058708 TGTCAAGCTCAGCAAATTCTTCG 60.059 43.478 0.00 0.00 0.00 3.79
508 535 3.187227 GTCAAGCTCAGCAAATTCTTCGA 59.813 43.478 0.00 0.00 0.00 3.71
509 536 4.005650 TCAAGCTCAGCAAATTCTTCGAT 58.994 39.130 0.00 0.00 0.00 3.59
510 537 4.093998 TCAAGCTCAGCAAATTCTTCGATC 59.906 41.667 0.00 0.00 0.00 3.69
511 538 3.871485 AGCTCAGCAAATTCTTCGATCT 58.129 40.909 0.00 0.00 0.00 2.75
512 539 4.260170 AGCTCAGCAAATTCTTCGATCTT 58.740 39.130 0.00 0.00 0.00 2.40
513 540 4.094590 AGCTCAGCAAATTCTTCGATCTTG 59.905 41.667 0.00 0.00 0.00 3.02
514 541 4.093998 GCTCAGCAAATTCTTCGATCTTGA 59.906 41.667 0.00 0.00 0.00 3.02
515 542 5.220815 GCTCAGCAAATTCTTCGATCTTGAT 60.221 40.000 0.00 0.00 0.00 2.57
516 543 6.677431 GCTCAGCAAATTCTTCGATCTTGATT 60.677 38.462 0.00 0.00 0.00 2.57
517 544 7.466455 GCTCAGCAAATTCTTCGATCTTGATTA 60.466 37.037 0.00 0.00 0.00 1.75
518 545 8.442632 TCAGCAAATTCTTCGATCTTGATTAT 57.557 30.769 0.00 0.00 0.00 1.28
519 546 9.546428 TCAGCAAATTCTTCGATCTTGATTATA 57.454 29.630 0.00 0.00 0.00 0.98
543 570 5.705609 TTTTACTTCTTGGCTGTCAATCC 57.294 39.130 0.00 0.00 34.45 3.01
544 571 4.640771 TTACTTCTTGGCTGTCAATCCT 57.359 40.909 0.00 0.00 34.45 3.24
545 572 3.515602 ACTTCTTGGCTGTCAATCCTT 57.484 42.857 0.00 0.00 34.45 3.36
546 573 3.837355 ACTTCTTGGCTGTCAATCCTTT 58.163 40.909 0.00 0.00 34.45 3.11
547 574 4.218312 ACTTCTTGGCTGTCAATCCTTTT 58.782 39.130 0.00 0.00 34.45 2.27
548 575 4.651045 ACTTCTTGGCTGTCAATCCTTTTT 59.349 37.500 0.00 0.00 34.45 1.94
576 603 6.790319 AGGTTAGCCTTCTTCTATTTTTCCA 58.210 36.000 0.00 0.00 44.18 3.53
577 604 6.887002 AGGTTAGCCTTCTTCTATTTTTCCAG 59.113 38.462 0.00 0.00 44.18 3.86
578 605 6.659668 GGTTAGCCTTCTTCTATTTTTCCAGT 59.340 38.462 0.00 0.00 0.00 4.00
579 606 7.148222 GGTTAGCCTTCTTCTATTTTTCCAGTC 60.148 40.741 0.00 0.00 0.00 3.51
580 607 6.133253 AGCCTTCTTCTATTTTTCCAGTCT 57.867 37.500 0.00 0.00 0.00 3.24
581 608 6.547402 AGCCTTCTTCTATTTTTCCAGTCTT 58.453 36.000 0.00 0.00 0.00 3.01
582 609 6.432472 AGCCTTCTTCTATTTTTCCAGTCTTG 59.568 38.462 0.00 0.00 0.00 3.02
583 610 6.207614 GCCTTCTTCTATTTTTCCAGTCTTGT 59.792 38.462 0.00 0.00 0.00 3.16
584 611 7.574030 GCCTTCTTCTATTTTTCCAGTCTTGTC 60.574 40.741 0.00 0.00 0.00 3.18
585 612 7.445402 CCTTCTTCTATTTTTCCAGTCTTGTCA 59.555 37.037 0.00 0.00 0.00 3.58
586 613 7.730364 TCTTCTATTTTTCCAGTCTTGTCAC 57.270 36.000 0.00 0.00 0.00 3.67
587 614 6.423905 TCTTCTATTTTTCCAGTCTTGTCACG 59.576 38.462 0.00 0.00 0.00 4.35
588 615 5.607477 TCTATTTTTCCAGTCTTGTCACGT 58.393 37.500 0.00 0.00 0.00 4.49
589 616 4.552166 ATTTTTCCAGTCTTGTCACGTG 57.448 40.909 9.94 9.94 0.00 4.49
590 617 2.971660 TTTCCAGTCTTGTCACGTGA 57.028 45.000 15.76 15.76 0.00 4.35
591 618 2.509052 TTCCAGTCTTGTCACGTGAG 57.491 50.000 20.73 7.81 0.00 3.51
651 678 9.547753 AATCTTTATGCTATAAATGAGACACGT 57.452 29.630 0.00 0.00 0.00 4.49
652 679 8.352752 TCTTTATGCTATAAATGAGACACGTG 57.647 34.615 15.48 15.48 0.00 4.49
653 680 7.979537 TCTTTATGCTATAAATGAGACACGTGT 59.020 33.333 23.64 23.64 0.00 4.49
654 681 8.487313 TTTATGCTATAAATGAGACACGTGTT 57.513 30.769 24.26 12.71 0.00 3.32
655 682 9.589111 TTTATGCTATAAATGAGACACGTGTTA 57.411 29.630 24.26 12.89 0.00 2.41
656 683 6.880822 TGCTATAAATGAGACACGTGTTAC 57.119 37.500 24.26 19.09 0.00 2.50
657 684 5.808540 TGCTATAAATGAGACACGTGTTACC 59.191 40.000 24.26 14.85 0.00 2.85
658 685 5.808540 GCTATAAATGAGACACGTGTTACCA 59.191 40.000 24.26 19.75 0.00 3.25
659 686 6.479001 GCTATAAATGAGACACGTGTTACCAT 59.521 38.462 24.26 20.99 0.00 3.55
660 687 6.662414 ATAAATGAGACACGTGTTACCATG 57.338 37.500 24.26 0.00 0.00 3.66
661 688 3.953712 ATGAGACACGTGTTACCATGA 57.046 42.857 24.26 4.67 0.00 3.07
662 689 3.737032 TGAGACACGTGTTACCATGAA 57.263 42.857 24.26 1.20 0.00 2.57
663 690 4.061357 TGAGACACGTGTTACCATGAAA 57.939 40.909 24.26 0.51 0.00 2.69
664 691 4.443621 TGAGACACGTGTTACCATGAAAA 58.556 39.130 24.26 0.00 0.00 2.29
665 692 4.876679 TGAGACACGTGTTACCATGAAAAA 59.123 37.500 24.26 0.00 0.00 1.94
690 717 7.543947 AAAAATGTGTACGTACTTATAGGCC 57.456 36.000 25.12 0.00 0.00 5.19
691 718 6.475596 AAATGTGTACGTACTTATAGGCCT 57.524 37.500 25.12 11.78 0.00 5.19
692 719 4.906065 TGTGTACGTACTTATAGGCCTG 57.094 45.455 25.12 0.00 0.00 4.85
693 720 4.525996 TGTGTACGTACTTATAGGCCTGA 58.474 43.478 25.12 0.00 0.00 3.86
694 721 5.135383 TGTGTACGTACTTATAGGCCTGAT 58.865 41.667 25.12 7.73 0.00 2.90
695 722 5.240183 TGTGTACGTACTTATAGGCCTGATC 59.760 44.000 25.12 0.00 0.00 2.92
696 723 4.763793 TGTACGTACTTATAGGCCTGATCC 59.236 45.833 25.12 0.00 0.00 3.36
697 724 3.840991 ACGTACTTATAGGCCTGATCCA 58.159 45.455 17.99 0.00 0.00 3.41
698 725 4.417437 ACGTACTTATAGGCCTGATCCAT 58.583 43.478 17.99 2.18 0.00 3.41
699 726 4.838986 ACGTACTTATAGGCCTGATCCATT 59.161 41.667 17.99 0.00 0.00 3.16
700 727 5.307196 ACGTACTTATAGGCCTGATCCATTT 59.693 40.000 17.99 0.00 0.00 2.32
701 728 6.495872 ACGTACTTATAGGCCTGATCCATTTA 59.504 38.462 17.99 0.00 0.00 1.40
702 729 7.036220 CGTACTTATAGGCCTGATCCATTTAG 58.964 42.308 17.99 4.31 0.00 1.85
703 730 6.380079 ACTTATAGGCCTGATCCATTTAGG 57.620 41.667 17.99 0.00 39.47 2.69
704 731 5.251700 ACTTATAGGCCTGATCCATTTAGGG 59.748 44.000 17.99 0.00 38.24 3.53
705 732 2.212752 AGGCCTGATCCATTTAGGGA 57.787 50.000 3.11 0.00 42.21 4.20
706 733 2.061061 AGGCCTGATCCATTTAGGGAG 58.939 52.381 3.11 0.00 41.08 4.30
707 734 1.074566 GGCCTGATCCATTTAGGGAGG 59.925 57.143 0.00 0.00 41.08 4.30
708 735 1.546548 GCCTGATCCATTTAGGGAGGC 60.547 57.143 0.00 0.00 43.11 4.70
709 736 1.271054 CCTGATCCATTTAGGGAGGCG 60.271 57.143 0.00 0.00 41.08 5.52
710 737 0.108585 TGATCCATTTAGGGAGGCGC 59.891 55.000 0.00 0.00 41.08 6.53
711 738 0.398318 GATCCATTTAGGGAGGCGCT 59.602 55.000 7.64 0.00 41.08 5.92
712 739 0.846693 ATCCATTTAGGGAGGCGCTT 59.153 50.000 7.64 0.00 41.08 4.68
713 740 0.180406 TCCATTTAGGGAGGCGCTTC 59.820 55.000 11.69 11.69 38.24 3.86
714 741 0.107214 CCATTTAGGGAGGCGCTTCA 60.107 55.000 21.86 0.00 0.00 3.02
715 742 1.303309 CATTTAGGGAGGCGCTTCAG 58.697 55.000 21.86 0.00 0.00 3.02
716 743 0.181350 ATTTAGGGAGGCGCTTCAGG 59.819 55.000 21.86 0.00 0.00 3.86
717 744 1.910580 TTTAGGGAGGCGCTTCAGGG 61.911 60.000 21.86 0.00 0.00 4.45
725 752 3.423154 CGCTTCAGGGGCACGTTC 61.423 66.667 0.00 0.00 0.00 3.95
726 753 3.056328 GCTTCAGGGGCACGTTCC 61.056 66.667 0.00 0.00 0.00 3.62
727 754 2.742372 CTTCAGGGGCACGTTCCG 60.742 66.667 0.00 0.00 0.00 4.30
728 755 4.323477 TTCAGGGGCACGTTCCGG 62.323 66.667 0.00 0.00 0.00 5.14
732 759 4.754667 GGGGCACGTTCCGGTCTC 62.755 72.222 0.00 0.00 0.00 3.36
734 761 4.047059 GGCACGTTCCGGTCTCGA 62.047 66.667 18.38 0.00 39.00 4.04
735 762 2.804090 GCACGTTCCGGTCTCGAC 60.804 66.667 18.38 9.08 39.00 4.20
747 774 2.745515 GTCTCGACCATTATAGGCCC 57.254 55.000 0.00 0.00 0.00 5.80
748 775 1.968493 GTCTCGACCATTATAGGCCCA 59.032 52.381 0.00 0.00 0.00 5.36
749 776 2.567615 GTCTCGACCATTATAGGCCCAT 59.432 50.000 0.00 0.00 0.00 4.00
750 777 3.008049 GTCTCGACCATTATAGGCCCATT 59.992 47.826 0.00 0.00 0.00 3.16
751 778 4.222145 GTCTCGACCATTATAGGCCCATTA 59.778 45.833 0.00 0.00 0.00 1.90
752 779 4.466370 TCTCGACCATTATAGGCCCATTAG 59.534 45.833 0.00 0.00 0.00 1.73
753 780 3.517901 TCGACCATTATAGGCCCATTAGG 59.482 47.826 0.00 0.00 39.47 2.69
754 781 3.517901 CGACCATTATAGGCCCATTAGGA 59.482 47.826 0.00 0.00 38.24 2.94
755 782 4.164221 CGACCATTATAGGCCCATTAGGAT 59.836 45.833 0.00 0.00 38.24 3.24
756 783 5.685075 CGACCATTATAGGCCCATTAGGATC 60.685 48.000 0.00 0.00 38.24 3.36
757 784 4.164221 ACCATTATAGGCCCATTAGGATCG 59.836 45.833 0.00 0.00 38.24 3.69
758 785 4.408921 CCATTATAGGCCCATTAGGATCGA 59.591 45.833 0.00 0.00 38.24 3.59
759 786 5.072329 CCATTATAGGCCCATTAGGATCGAT 59.928 44.000 0.00 0.00 38.24 3.59
760 787 6.270000 CCATTATAGGCCCATTAGGATCGATA 59.730 42.308 0.00 0.00 38.24 2.92
761 788 6.978674 TTATAGGCCCATTAGGATCGATAG 57.021 41.667 0.00 0.00 38.24 2.08
762 789 3.474798 AGGCCCATTAGGATCGATAGA 57.525 47.619 0.00 0.00 43.93 1.98
763 790 3.370104 AGGCCCATTAGGATCGATAGAG 58.630 50.000 0.00 0.00 43.21 2.43
764 791 3.011821 AGGCCCATTAGGATCGATAGAGA 59.988 47.826 0.00 0.00 43.21 3.10
765 792 3.964031 GGCCCATTAGGATCGATAGAGAT 59.036 47.826 0.00 0.00 43.21 2.75
766 793 5.103473 AGGCCCATTAGGATCGATAGAGATA 60.103 44.000 0.00 0.00 43.21 1.98
767 794 5.242838 GGCCCATTAGGATCGATAGAGATAG 59.757 48.000 0.00 0.00 43.21 2.08
768 795 5.278758 GCCCATTAGGATCGATAGAGATAGC 60.279 48.000 0.00 0.00 43.21 2.97
769 796 8.435984 GCCCATTAGGATCGATAGAGATAGCG 62.436 50.000 0.00 0.00 43.21 4.26
774 801 1.166129 TCGATAGAGATAGCGTGGGC 58.834 55.000 0.00 0.00 42.67 5.36
775 802 0.171455 CGATAGAGATAGCGTGGGCC 59.829 60.000 0.00 0.00 38.18 5.80
776 803 1.257743 GATAGAGATAGCGTGGGCCA 58.742 55.000 0.00 0.00 41.24 5.36
777 804 1.203523 GATAGAGATAGCGTGGGCCAG 59.796 57.143 6.40 1.95 41.24 4.85
778 805 0.185175 TAGAGATAGCGTGGGCCAGA 59.815 55.000 6.40 0.00 41.24 3.86
779 806 0.687757 AGAGATAGCGTGGGCCAGAA 60.688 55.000 6.40 0.00 41.24 3.02
780 807 0.178068 GAGATAGCGTGGGCCAGAAA 59.822 55.000 6.40 0.00 41.24 2.52
781 808 0.179000 AGATAGCGTGGGCCAGAAAG 59.821 55.000 6.40 0.00 41.24 2.62
782 809 1.440145 GATAGCGTGGGCCAGAAAGC 61.440 60.000 6.40 10.97 41.24 3.51
794 821 2.019984 CCAGAAAGCCTAATGAGGTGC 58.980 52.381 0.00 0.00 45.78 5.01
799 826 1.279496 AGCCTAATGAGGTGCTGTGA 58.721 50.000 0.00 0.00 45.78 3.58
805 832 0.035881 ATGAGGTGCTGTGACTGGTG 59.964 55.000 0.00 0.00 0.00 4.17
806 833 1.337384 TGAGGTGCTGTGACTGGTGT 61.337 55.000 0.00 0.00 0.00 4.16
807 834 0.601311 GAGGTGCTGTGACTGGTGTC 60.601 60.000 0.00 0.00 43.20 3.67
901 931 0.798776 CGTACGTCGTTAGGTGGTCT 59.201 55.000 7.22 0.00 34.52 3.85
1209 1242 1.351080 CCCTGCCCATGATCCTCACT 61.351 60.000 0.00 0.00 0.00 3.41
1268 1301 0.031010 GTATCCTCCACCCCCACTCT 60.031 60.000 0.00 0.00 0.00 3.24
1270 1303 2.847292 ATCCTCCACCCCCACTCTGG 62.847 65.000 0.00 0.00 37.25 3.86
1345 1490 9.702726 CACGTTTATTTAGGATTGAACACATAG 57.297 33.333 0.00 0.00 0.00 2.23
1382 1527 4.426416 TGCGTACTGTATACATGTGAACC 58.574 43.478 9.11 0.00 0.00 3.62
1402 1547 1.668419 GCTAAGGCCGATCATTGTGT 58.332 50.000 0.00 0.00 0.00 3.72
1454 2561 6.398918 TGTGAGCTTCTAGAAATGTAACCTC 58.601 40.000 6.63 4.88 0.00 3.85
1455 2562 6.014584 TGTGAGCTTCTAGAAATGTAACCTCA 60.015 38.462 6.63 7.05 0.00 3.86
1456 2563 6.874134 GTGAGCTTCTAGAAATGTAACCTCAA 59.126 38.462 6.63 0.00 0.00 3.02
1457 2564 7.064016 GTGAGCTTCTAGAAATGTAACCTCAAG 59.936 40.741 6.63 0.00 0.00 3.02
1458 2565 6.410540 AGCTTCTAGAAATGTAACCTCAAGG 58.589 40.000 6.63 0.00 42.17 3.61
1459 2566 6.213600 AGCTTCTAGAAATGTAACCTCAAGGA 59.786 38.462 6.63 0.00 38.94 3.36
1460 2567 6.879458 GCTTCTAGAAATGTAACCTCAAGGAA 59.121 38.462 6.63 0.00 38.94 3.36
1461 2568 7.148390 GCTTCTAGAAATGTAACCTCAAGGAAC 60.148 40.741 6.63 1.53 38.94 3.62
1462 2569 6.395629 TCTAGAAATGTAACCTCAAGGAACG 58.604 40.000 2.30 0.00 38.94 3.95
1463 2570 5.223449 AGAAATGTAACCTCAAGGAACGA 57.777 39.130 2.30 0.00 38.94 3.85
1464 2571 5.238583 AGAAATGTAACCTCAAGGAACGAG 58.761 41.667 2.30 0.00 38.94 4.18
1465 2572 2.450609 TGTAACCTCAAGGAACGAGC 57.549 50.000 2.30 0.00 38.94 5.03
1466 2573 1.968493 TGTAACCTCAAGGAACGAGCT 59.032 47.619 2.30 0.00 38.94 4.09
1467 2574 2.288825 TGTAACCTCAAGGAACGAGCTG 60.289 50.000 2.30 0.00 38.94 4.24
1468 2575 1.048601 AACCTCAAGGAACGAGCTGA 58.951 50.000 2.30 0.00 38.94 4.26
1469 2576 1.270907 ACCTCAAGGAACGAGCTGAT 58.729 50.000 2.30 0.00 38.94 2.90
1470 2577 2.457598 ACCTCAAGGAACGAGCTGATA 58.542 47.619 2.30 0.00 38.94 2.15
1471 2578 2.428890 ACCTCAAGGAACGAGCTGATAG 59.571 50.000 2.30 0.00 38.94 2.08
1472 2579 2.690497 CCTCAAGGAACGAGCTGATAGA 59.310 50.000 0.00 0.00 37.39 1.98
1473 2580 3.243367 CCTCAAGGAACGAGCTGATAGAG 60.243 52.174 0.00 0.00 37.39 2.43
1474 2581 3.357203 TCAAGGAACGAGCTGATAGAGT 58.643 45.455 0.00 0.00 0.00 3.24
1475 2582 3.129462 TCAAGGAACGAGCTGATAGAGTG 59.871 47.826 0.00 0.00 0.00 3.51
1476 2583 2.028130 AGGAACGAGCTGATAGAGTGG 58.972 52.381 0.00 0.00 0.00 4.00
1477 2584 1.751924 GGAACGAGCTGATAGAGTGGT 59.248 52.381 0.00 0.00 0.00 4.16
1478 2585 2.166664 GGAACGAGCTGATAGAGTGGTT 59.833 50.000 0.00 0.00 0.00 3.67
1479 2586 2.949451 ACGAGCTGATAGAGTGGTTG 57.051 50.000 0.00 0.00 0.00 3.77
1480 2587 2.171840 ACGAGCTGATAGAGTGGTTGT 58.828 47.619 0.00 0.00 0.00 3.32
1481 2588 2.563179 ACGAGCTGATAGAGTGGTTGTT 59.437 45.455 0.00 0.00 0.00 2.83
1482 2589 3.762288 ACGAGCTGATAGAGTGGTTGTTA 59.238 43.478 0.00 0.00 0.00 2.41
1483 2590 4.142359 ACGAGCTGATAGAGTGGTTGTTAG 60.142 45.833 0.00 0.00 0.00 2.34
1484 2591 4.142359 CGAGCTGATAGAGTGGTTGTTAGT 60.142 45.833 0.00 0.00 0.00 2.24
1854 3794 1.081892 ATGCACACATCGAGCTTCAC 58.918 50.000 0.00 0.00 0.00 3.18
1984 3941 0.886490 AGCCTCAAAAGCTGACCACG 60.886 55.000 0.00 0.00 39.69 4.94
2008 3966 8.189460 ACGTCTTCTTAGCGAAAGATACTTTAT 58.811 33.333 5.53 0.00 43.75 1.40
2073 4031 6.012745 AGACCCTTTGTATCTTGCAAATCTT 58.987 36.000 0.00 0.00 35.60 2.40
2161 4119 1.903877 CGGATGCCAGACCAGTTCCT 61.904 60.000 0.00 0.00 0.00 3.36
2163 4121 0.326264 GATGCCAGACCAGTTCCTGT 59.674 55.000 0.00 0.00 0.00 4.00
2173 4131 1.337635 CCAGTTCCTGTCTGCACTCTC 60.338 57.143 0.00 0.00 0.00 3.20
2241 5910 0.395586 AACTTTGCCTGCCTGTGACA 60.396 50.000 0.00 0.00 0.00 3.58
2245 5914 1.723608 TTGCCTGCCTGTGACAAACG 61.724 55.000 0.00 0.00 0.00 3.60
2261 5930 4.962155 ACAAACGAGATTTTCCTCTGTCT 58.038 39.130 0.00 0.00 0.00 3.41
2403 6075 6.640518 TCAGTGATGTAACTGTTCCCTATTC 58.359 40.000 0.00 0.00 46.33 1.75
2404 6076 6.440647 TCAGTGATGTAACTGTTCCCTATTCT 59.559 38.462 0.00 0.00 46.33 2.40
2405 6077 7.038302 TCAGTGATGTAACTGTTCCCTATTCTT 60.038 37.037 0.00 0.00 46.33 2.52
2448 6120 3.349927 CAATCCATCTTCTCACCAAGCA 58.650 45.455 0.00 0.00 0.00 3.91
2463 6135 0.040942 AAGCATGCCCACCCAATGTA 59.959 50.000 15.66 0.00 0.00 2.29
2466 6138 0.455410 CATGCCCACCCAATGTAACG 59.545 55.000 0.00 0.00 0.00 3.18
2615 6295 2.439507 TCAGATTTCTCCACCCCATAGC 59.560 50.000 0.00 0.00 0.00 2.97
2623 6303 1.992557 TCCACCCCATAGCTCTTGTTT 59.007 47.619 0.00 0.00 0.00 2.83
2672 6352 1.682684 GAGACCGCAAGAGGGAGGA 60.683 63.158 0.00 0.00 43.02 3.71
2790 6946 6.627395 AGAGAAGGATCGTTCTGTATGTAG 57.373 41.667 29.96 0.00 36.89 2.74
2824 6980 9.656040 ATTACTGTATTAAATTGTACGGTGACA 57.344 29.630 15.37 0.00 39.88 3.58
2888 7044 9.025041 AGAAGATATTTCCAGTTTTACTTTGGG 57.975 33.333 0.00 0.00 32.76 4.12
2899 7055 4.664150 TTTACTTTGGGGCTTTCAACTG 57.336 40.909 0.00 0.00 0.00 3.16
2907 7063 2.137523 GGGCTTTCAACTGCAACATTG 58.862 47.619 0.00 0.00 0.00 2.82
2922 7078 4.685924 CAACATTGGCTGAACTCAGTTTT 58.314 39.130 8.46 0.00 45.45 2.43
3042 7198 4.024472 GTCTGTTCTGCTCTCCTTTTTCAC 60.024 45.833 0.00 0.00 0.00 3.18
3127 7283 3.149196 GAGACCAAGCAATCACCTCAAA 58.851 45.455 0.00 0.00 0.00 2.69
3131 7287 3.508793 ACCAAGCAATCACCTCAAATGAG 59.491 43.478 3.37 3.37 41.71 2.90
3204 7360 4.405116 TTTCAGCAGGCTTGTGATTTTT 57.595 36.364 0.00 0.00 0.00 1.94
3214 7370 5.055812 GGCTTGTGATTTTTGGACATTCAA 58.944 37.500 0.00 0.00 0.00 2.69
3288 7444 5.838531 TTTCGGTCTTGTTTTATTGGTGT 57.161 34.783 0.00 0.00 0.00 4.16
3303 7459 1.302033 GTGTGTCCTCTGGCACTGG 60.302 63.158 0.00 0.00 36.63 4.00
3696 7861 6.751888 CGTCATGTATGTGATTGAAGTAGACA 59.248 38.462 0.00 0.00 0.00 3.41
3722 7887 5.380043 GTTGGGGTTGATATCATGATGTCT 58.620 41.667 26.68 9.81 31.27 3.41
3852 8017 2.436824 GCCACGAGGAAAGGGAGC 60.437 66.667 1.86 0.00 36.89 4.70
3853 8018 3.068881 CCACGAGGAAAGGGAGCA 58.931 61.111 0.00 0.00 36.89 4.26
3854 8019 1.604378 CCACGAGGAAAGGGAGCAT 59.396 57.895 0.00 0.00 36.89 3.79
3855 8020 0.745845 CCACGAGGAAAGGGAGCATG 60.746 60.000 0.00 0.00 36.89 4.06
3936 8101 1.696336 GGGGATCTTATCAGCTGAGCA 59.304 52.381 22.96 9.67 0.00 4.26
3939 8104 3.007723 GGGATCTTATCAGCTGAGCATGA 59.992 47.826 22.96 18.16 0.00 3.07
3966 8131 0.686769 CCCGGAACCCTACAGCTAGT 60.687 60.000 0.73 0.00 0.00 2.57
4117 8282 3.120041 CGGATGAAGCAAAACGGTTTTT 58.880 40.909 15.77 2.53 34.82 1.94
4318 8483 3.425892 GCTCTGAAGCTTAGTTGCATGTG 60.426 47.826 0.00 0.00 45.55 3.21
4556 8725 8.932610 ACATAACTTCCTCACTATCATCTCATT 58.067 33.333 0.00 0.00 0.00 2.57
4631 8804 7.743116 TGGAGTTAGTTTATTGGATCCACTA 57.257 36.000 15.91 11.29 30.85 2.74
4632 8805 8.153221 TGGAGTTAGTTTATTGGATCCACTAA 57.847 34.615 15.91 17.20 30.85 2.24
4732 8905 6.951778 TGCTATATATAACTAGCAGGGTCACA 59.048 38.462 12.16 0.00 43.97 3.58
4848 9136 7.667043 TTGAGTGATTGTGGTAGACATTTAC 57.333 36.000 0.00 0.00 33.40 2.01
4849 9137 7.004555 TGAGTGATTGTGGTAGACATTTACT 57.995 36.000 0.00 0.00 37.43 2.24
4852 9140 8.362464 AGTGATTGTGGTAGACATTTACTCTA 57.638 34.615 0.00 0.00 32.26 2.43
4962 9262 9.595823 TGTAGTAATTCTGAAGGCATTAGTTAC 57.404 33.333 0.00 0.00 0.00 2.50
5105 9412 2.589720 TCAAGTCTCCGTGTTGGTAGA 58.410 47.619 0.00 0.00 39.52 2.59
5106 9413 3.162666 TCAAGTCTCCGTGTTGGTAGAT 58.837 45.455 0.00 0.00 39.52 1.98
5132 9440 4.880696 GGCAGCAAGTCATCTCTTTTCTAT 59.119 41.667 0.00 0.00 0.00 1.98
5172 9501 4.923516 ACCTGCATCCTTATCTGCATAT 57.076 40.909 0.00 0.00 46.48 1.78
5232 9567 7.525688 TTGATGCTTAAGACTTATCTTGACG 57.474 36.000 6.67 0.00 45.17 4.35
5279 9614 2.368439 GATTGGGCTGTTGATGTGCTA 58.632 47.619 0.00 0.00 0.00 3.49
5347 9682 0.877071 AGAAGAAATGCACACCAGCG 59.123 50.000 0.00 0.00 37.31 5.18
5402 9739 5.582689 AACACTTTTGGGTTCTCTTGAAG 57.417 39.130 0.00 0.00 43.69 3.02
5458 9801 3.126858 TCCTCGTAAATGCTAACGTACGT 59.873 43.478 16.72 16.72 40.10 3.57
5461 9804 3.845775 TCGTAAATGCTAACGTACGTGAC 59.154 43.478 23.57 14.61 40.10 3.67
5462 9805 3.603343 CGTAAATGCTAACGTACGTGACA 59.397 43.478 23.57 19.74 35.71 3.58
5472 9815 1.710249 CGTACGTGACAAACTACGGTG 59.290 52.381 7.22 0.00 44.07 4.94
5521 9893 1.136828 ATAAATGCTACTCCCCGCCA 58.863 50.000 0.00 0.00 0.00 5.69
5535 9907 1.439353 CCGCCAATTCGATGACCTGG 61.439 60.000 0.00 0.00 0.00 4.45
5553 9925 2.028130 TGGAGTTCATGCCGTTTGTTT 58.972 42.857 0.00 0.00 0.00 2.83
5561 9933 1.850377 TGCCGTTTGTTTGAATGCAG 58.150 45.000 0.00 0.00 0.00 4.41
5632 10014 8.715191 ATTCTAATTGAGAGCTGTAGTTTCAG 57.285 34.615 0.00 0.00 34.93 3.02
5659 10041 9.877178 CACCTCTTGTGTTTAGATCTTACTATT 57.123 33.333 0.00 0.00 40.26 1.73
5726 10112 6.493802 TGAGATCCAACTTTGAGTAGTACAGT 59.506 38.462 2.52 0.00 0.00 3.55
5732 10118 6.015688 CCAACTTTGAGTAGTACAGTACTCCA 60.016 42.308 16.91 10.65 45.81 3.86
5733 10119 6.572167 ACTTTGAGTAGTACAGTACTCCAC 57.428 41.667 16.91 10.64 45.81 4.02
5742 10128 3.324246 AGTACTCCACTGGGATGGG 57.676 57.895 0.00 0.00 43.91 4.00
5743 10129 0.716591 AGTACTCCACTGGGATGGGA 59.283 55.000 0.00 0.00 43.91 4.37
5747 10133 1.123928 CTCCACTGGGATGGGAGTAC 58.876 60.000 0.00 0.00 43.91 2.73
5754 10140 3.012502 ACTGGGATGGGAGTACTCACTAA 59.987 47.826 25.11 7.16 34.21 2.24
5764 10150 7.458397 TGGGAGTACTCACTAAATCATTTGTT 58.542 34.615 25.11 0.00 34.21 2.83
5785 10229 6.212235 TGTTATTTACAGTGTGCCATTGTTG 58.788 36.000 5.88 0.00 35.92 3.33
5802 10246 8.087982 CCATTGTTGGCTTATACTAGTACATG 57.912 38.462 4.31 0.00 35.85 3.21
5803 10247 7.715249 CCATTGTTGGCTTATACTAGTACATGT 59.285 37.037 4.31 2.69 35.85 3.21
5804 10248 8.551205 CATTGTTGGCTTATACTAGTACATGTG 58.449 37.037 9.11 0.00 0.00 3.21
5805 10249 6.046593 TGTTGGCTTATACTAGTACATGTGC 58.953 40.000 9.11 7.34 0.00 4.57
5806 10250 5.862678 TGGCTTATACTAGTACATGTGCA 57.137 39.130 16.62 1.68 0.00 4.57
5807 10251 5.597806 TGGCTTATACTAGTACATGTGCAC 58.402 41.667 16.62 10.75 0.00 4.57
5808 10252 5.128008 TGGCTTATACTAGTACATGTGCACA 59.872 40.000 24.08 24.08 0.00 4.57
5809 10253 5.692204 GGCTTATACTAGTACATGTGCACAG 59.308 44.000 25.84 18.42 0.00 3.66
5810 10254 6.273825 GCTTATACTAGTACATGTGCACAGT 58.726 40.000 25.84 22.68 0.00 3.55
5811 10255 6.199154 GCTTATACTAGTACATGTGCACAGTG 59.801 42.308 25.84 22.70 0.00 3.66
5812 10256 2.688507 ACTAGTACATGTGCACAGTGC 58.311 47.619 25.84 22.94 45.29 4.40
5827 10271 2.471255 GTGCAGTCCACATGCCTAC 58.529 57.895 0.00 0.00 44.06 3.18
5828 10272 1.026718 GTGCAGTCCACATGCCTACC 61.027 60.000 0.00 0.00 44.06 3.18
5829 10273 1.200760 TGCAGTCCACATGCCTACCT 61.201 55.000 0.00 0.00 43.18 3.08
5838 10282 2.735772 ATGCCTACCTGACGGCTGG 61.736 63.158 13.50 13.50 46.42 4.85
5855 10299 0.835276 TGGTGGGATCTGCTCTCATG 59.165 55.000 0.00 0.00 36.53 3.07
5857 10301 0.179702 GTGGGATCTGCTCTCATGCA 59.820 55.000 0.00 0.00 36.53 3.96
5858 10302 1.137697 TGGGATCTGCTCTCATGCAT 58.862 50.000 0.00 0.00 42.48 3.96
5862 10306 3.004524 GGGATCTGCTCTCATGCATTTTC 59.995 47.826 0.00 0.00 42.48 2.29
5863 10307 3.884091 GGATCTGCTCTCATGCATTTTCT 59.116 43.478 0.00 0.00 42.48 2.52
5864 10308 4.338682 GGATCTGCTCTCATGCATTTTCTT 59.661 41.667 0.00 0.00 42.48 2.52
5865 10309 5.530171 GGATCTGCTCTCATGCATTTTCTTA 59.470 40.000 0.00 0.00 42.48 2.10
5866 10310 5.808042 TCTGCTCTCATGCATTTTCTTAC 57.192 39.130 0.00 0.00 42.48 2.34
5867 10311 4.330894 TCTGCTCTCATGCATTTTCTTACG 59.669 41.667 0.00 0.00 42.48 3.18
5868 10312 3.374988 TGCTCTCATGCATTTTCTTACGG 59.625 43.478 0.00 0.00 38.12 4.02
5869 10313 3.375299 GCTCTCATGCATTTTCTTACGGT 59.625 43.478 0.00 0.00 0.00 4.83
5870 10314 4.570772 GCTCTCATGCATTTTCTTACGGTA 59.429 41.667 0.00 0.00 0.00 4.02
5874 10318 6.597672 TCTCATGCATTTTCTTACGGTATGTT 59.402 34.615 0.00 0.00 0.00 2.71
5886 10331 1.339644 GGTATGTTGGGGGAGCGGTA 61.340 60.000 0.00 0.00 0.00 4.02
5890 10335 1.301954 GTTGGGGGAGCGGTACATT 59.698 57.895 0.00 0.00 0.00 2.71
5891 10336 0.542805 GTTGGGGGAGCGGTACATTA 59.457 55.000 0.00 0.00 0.00 1.90
5892 10337 0.542805 TTGGGGGAGCGGTACATTAC 59.457 55.000 0.00 0.00 0.00 1.89
5893 10338 0.618107 TGGGGGAGCGGTACATTACA 60.618 55.000 0.00 0.00 0.00 2.41
5894 10339 0.763035 GGGGGAGCGGTACATTACAT 59.237 55.000 0.00 0.00 0.00 2.29
5895 10340 1.270678 GGGGGAGCGGTACATTACATC 60.271 57.143 0.00 0.00 0.00 3.06
5896 10341 1.604693 GGGGAGCGGTACATTACATCG 60.605 57.143 0.00 0.00 0.00 3.84
5897 10342 1.068127 GGGAGCGGTACATTACATCGT 59.932 52.381 0.00 0.00 0.00 3.73
5898 10343 2.482490 GGGAGCGGTACATTACATCGTT 60.482 50.000 0.00 0.00 0.00 3.85
5900 10345 3.619929 GGAGCGGTACATTACATCGTTTT 59.380 43.478 0.00 0.00 0.00 2.43
5901 10346 4.093850 GGAGCGGTACATTACATCGTTTTT 59.906 41.667 0.00 0.00 0.00 1.94
5902 10347 4.965062 AGCGGTACATTACATCGTTTTTG 58.035 39.130 0.00 0.00 0.00 2.44
5903 10348 3.540738 GCGGTACATTACATCGTTTTTGC 59.459 43.478 0.00 0.00 0.00 3.68
5904 10349 4.713806 CGGTACATTACATCGTTTTTGCA 58.286 39.130 0.00 0.00 0.00 4.08
5905 10350 5.147865 CGGTACATTACATCGTTTTTGCAA 58.852 37.500 0.00 0.00 0.00 4.08
5906 10351 5.797934 CGGTACATTACATCGTTTTTGCAAT 59.202 36.000 0.00 0.00 0.00 3.56
5907 10352 6.962116 CGGTACATTACATCGTTTTTGCAATA 59.038 34.615 0.00 0.00 0.00 1.90
5908 10353 7.482113 CGGTACATTACATCGTTTTTGCAATAA 59.518 33.333 0.00 0.00 0.00 1.40
5909 10354 9.130312 GGTACATTACATCGTTTTTGCAATAAA 57.870 29.630 0.00 1.28 0.00 1.40
5972 10417 3.211963 CCGCCTGCCAATAGCCAC 61.212 66.667 0.00 0.00 42.71 5.01
5973 10418 2.124570 CGCCTGCCAATAGCCACT 60.125 61.111 0.00 0.00 42.71 4.00
5974 10419 2.182842 CGCCTGCCAATAGCCACTC 61.183 63.158 0.00 0.00 42.71 3.51
5975 10420 1.077501 GCCTGCCAATAGCCACTCA 60.078 57.895 0.00 0.00 42.71 3.41
5976 10421 1.099879 GCCTGCCAATAGCCACTCAG 61.100 60.000 0.00 0.00 42.71 3.35
5977 10422 1.099879 CCTGCCAATAGCCACTCAGC 61.100 60.000 0.00 0.00 42.71 4.26
5979 10424 1.077501 GCCAATAGCCACTCAGCCA 60.078 57.895 0.00 0.00 34.35 4.75
6014 10461 1.227853 GTTTCAGCAGTGACCGGGT 60.228 57.895 6.32 0.00 30.10 5.28
6034 10481 0.897621 TGCCATCGATCTGTGACTGT 59.102 50.000 0.00 0.00 0.00 3.55
6048 10495 2.028190 CTGTATCTCGCCCGCCAG 59.972 66.667 0.00 0.00 0.00 4.85
6049 10496 2.441348 TGTATCTCGCCCGCCAGA 60.441 61.111 0.00 0.00 0.00 3.86
6051 10498 2.441348 TATCTCGCCCGCCAGACA 60.441 61.111 0.00 0.00 0.00 3.41
6052 10499 1.832608 TATCTCGCCCGCCAGACAT 60.833 57.895 0.00 0.00 0.00 3.06
6053 10500 1.806461 TATCTCGCCCGCCAGACATC 61.806 60.000 0.00 0.00 0.00 3.06
6068 10593 0.687354 ACATCCTGGTTGAGTTCGCT 59.313 50.000 11.60 0.00 0.00 4.93
6071 10596 1.302033 CCTGGTTGAGTTCGCTGCT 60.302 57.895 0.00 0.00 0.00 4.24
6072 10597 1.294659 CCTGGTTGAGTTCGCTGCTC 61.295 60.000 0.00 0.00 0.00 4.26
6073 10598 1.621301 CTGGTTGAGTTCGCTGCTCG 61.621 60.000 0.00 0.00 35.85 5.03
6084 10609 2.659016 CTGCTCGACCTTGCTCCA 59.341 61.111 0.00 0.00 0.00 3.86
6085 10610 1.447489 CTGCTCGACCTTGCTCCAG 60.447 63.158 0.00 0.00 0.00 3.86
6096 10621 2.092538 CCTTGCTCCAGATTGGTGATCT 60.093 50.000 1.60 0.00 46.12 2.75
6103 10629 4.099633 TCCAGATTGGTGATCTCTTGACT 58.900 43.478 0.00 0.00 43.32 3.41
6108 10634 8.206867 CCAGATTGGTGATCTCTTGACTTTATA 58.793 37.037 0.00 0.00 43.32 0.98
6125 10651 9.838339 TGACTTTATACTACTACCACTACTACC 57.162 37.037 0.00 0.00 0.00 3.18
6126 10652 8.894768 ACTTTATACTACTACCACTACTACCG 57.105 38.462 0.00 0.00 0.00 4.02
6127 10653 7.934120 ACTTTATACTACTACCACTACTACCGG 59.066 40.741 0.00 0.00 0.00 5.28
6128 10654 5.896073 ATACTACTACCACTACTACCGGT 57.104 43.478 13.98 13.98 36.79 5.28
6129 10655 6.996180 ATACTACTACCACTACTACCGGTA 57.004 41.667 14.95 14.95 34.12 4.02
6130 10656 5.896073 ACTACTACCACTACTACCGGTAT 57.104 43.478 16.25 8.20 34.82 2.73
6131 10657 6.996180 ACTACTACCACTACTACCGGTATA 57.004 41.667 16.25 8.92 34.82 1.47
6132 10658 6.760291 ACTACTACCACTACTACCGGTATAC 58.240 44.000 16.25 0.00 34.82 1.47
6133 10659 4.974399 ACTACCACTACTACCGGTATACC 58.026 47.826 16.25 12.27 34.82 2.73
6134 10660 4.660771 ACTACCACTACTACCGGTATACCT 59.339 45.833 16.25 4.63 34.82 3.08
6135 10661 4.526438 ACCACTACTACCGGTATACCTT 57.474 45.455 16.25 9.01 0.00 3.50
6136 10662 4.210331 ACCACTACTACCGGTATACCTTG 58.790 47.826 16.25 12.71 0.00 3.61
6137 10663 4.079787 ACCACTACTACCGGTATACCTTGA 60.080 45.833 16.25 3.60 0.00 3.02
6138 10664 5.075493 CCACTACTACCGGTATACCTTGAT 58.925 45.833 16.25 5.02 0.00 2.57
6139 10665 6.183361 ACCACTACTACCGGTATACCTTGATA 60.183 42.308 16.25 5.87 0.00 2.15
6140 10666 6.150140 CCACTACTACCGGTATACCTTGATAC 59.850 46.154 16.25 0.00 0.00 2.24
6141 10667 6.939163 CACTACTACCGGTATACCTTGATACT 59.061 42.308 16.25 0.00 33.53 2.12
6142 10668 6.939163 ACTACTACCGGTATACCTTGATACTG 59.061 42.308 16.25 0.68 38.09 2.74
6143 10669 5.945310 ACTACCGGTATACCTTGATACTGA 58.055 41.667 16.25 0.00 39.95 3.41
6144 10670 6.550163 ACTACCGGTATACCTTGATACTGAT 58.450 40.000 16.25 0.00 39.95 2.90
6145 10671 7.693132 ACTACCGGTATACCTTGATACTGATA 58.307 38.462 16.25 0.00 39.95 2.15
6146 10672 8.334734 ACTACCGGTATACCTTGATACTGATAT 58.665 37.037 16.25 0.00 39.95 1.63
6147 10673 9.186837 CTACCGGTATACCTTGATACTGATATT 57.813 37.037 16.25 0.00 39.95 1.28
6183 10709 1.760479 ATGTTGTTCCCGACCGGTGA 61.760 55.000 14.63 0.00 0.00 4.02
6213 10739 2.656069 GCCAGTCCGGAGTAGCCAA 61.656 63.158 17.90 0.00 36.56 4.52
6220 10746 0.895530 CCGGAGTAGCCAAACAGAGA 59.104 55.000 0.00 0.00 35.94 3.10
6222 10748 1.546476 CGGAGTAGCCAAACAGAGAGT 59.454 52.381 0.00 0.00 35.94 3.24
6223 10749 2.753452 CGGAGTAGCCAAACAGAGAGTA 59.247 50.000 0.00 0.00 35.94 2.59
6229 10756 1.714794 CCAAACAGAGAGTAGCCACG 58.285 55.000 0.00 0.00 0.00 4.94
6241 10768 4.388499 GCCACGTCCGTCCATGGT 62.388 66.667 12.58 0.00 34.50 3.55
6242 10769 2.125673 CCACGTCCGTCCATGGTC 60.126 66.667 12.58 5.07 0.00 4.02
6243 10770 2.125673 CACGTCCGTCCATGGTCC 60.126 66.667 12.58 2.73 0.00 4.46
6244 10771 3.755628 ACGTCCGTCCATGGTCCG 61.756 66.667 12.58 14.91 0.00 4.79
6245 10772 3.755628 CGTCCGTCCATGGTCCGT 61.756 66.667 12.58 0.00 0.00 4.69
6246 10773 2.660802 GTCCGTCCATGGTCCGTT 59.339 61.111 12.58 0.00 0.00 4.44
6247 10774 1.892338 GTCCGTCCATGGTCCGTTA 59.108 57.895 12.58 3.55 0.00 3.18
6248 10775 0.459063 GTCCGTCCATGGTCCGTTAC 60.459 60.000 12.58 11.43 0.00 2.50
6249 10776 0.899253 TCCGTCCATGGTCCGTTACA 60.899 55.000 12.58 0.00 0.00 2.41
6250 10777 0.177141 CCGTCCATGGTCCGTTACAT 59.823 55.000 12.58 0.00 0.00 2.29
6251 10778 1.406341 CCGTCCATGGTCCGTTACATT 60.406 52.381 12.58 0.00 0.00 2.71
6252 10779 2.352388 CGTCCATGGTCCGTTACATTT 58.648 47.619 12.58 0.00 0.00 2.32
6253 10780 2.350498 CGTCCATGGTCCGTTACATTTC 59.650 50.000 12.58 0.00 0.00 2.17
6254 10781 2.681344 GTCCATGGTCCGTTACATTTCC 59.319 50.000 12.58 0.00 0.00 3.13
6255 10782 2.021457 CCATGGTCCGTTACATTTCCC 58.979 52.381 2.57 0.00 0.00 3.97
6256 10783 2.619332 CCATGGTCCGTTACATTTCCCA 60.619 50.000 2.57 0.00 0.00 4.37
6257 10784 3.287222 CATGGTCCGTTACATTTCCCAT 58.713 45.455 0.00 0.00 0.00 4.00
6258 10785 3.443145 TGGTCCGTTACATTTCCCATT 57.557 42.857 0.00 0.00 0.00 3.16
6259 10786 3.768878 TGGTCCGTTACATTTCCCATTT 58.231 40.909 0.00 0.00 0.00 2.32
6260 10787 3.508012 TGGTCCGTTACATTTCCCATTTG 59.492 43.478 0.00 0.00 0.00 2.32
6261 10788 3.119280 GGTCCGTTACATTTCCCATTTGG 60.119 47.826 0.00 0.00 0.00 3.28
6262 10789 2.494073 TCCGTTACATTTCCCATTTGGC 59.506 45.455 0.00 0.00 0.00 4.52
6263 10790 2.418060 CCGTTACATTTCCCATTTGGCC 60.418 50.000 0.00 0.00 0.00 5.36
6264 10791 2.495669 CGTTACATTTCCCATTTGGCCT 59.504 45.455 3.32 0.00 0.00 5.19
6265 10792 3.428862 CGTTACATTTCCCATTTGGCCTC 60.429 47.826 3.32 0.00 0.00 4.70
6266 10793 1.185315 ACATTTCCCATTTGGCCTCG 58.815 50.000 3.32 0.00 0.00 4.63
6267 10794 1.185315 CATTTCCCATTTGGCCTCGT 58.815 50.000 3.32 0.00 0.00 4.18
6268 10795 1.134946 CATTTCCCATTTGGCCTCGTC 59.865 52.381 3.32 0.00 0.00 4.20
6269 10796 0.958382 TTTCCCATTTGGCCTCGTCG 60.958 55.000 3.32 0.00 0.00 5.12
6270 10797 2.046314 CCCATTTGGCCTCGTCGT 60.046 61.111 3.32 0.00 0.00 4.34
6271 10798 1.219664 CCCATTTGGCCTCGTCGTA 59.780 57.895 3.32 0.00 0.00 3.43
6272 10799 1.087771 CCCATTTGGCCTCGTCGTAC 61.088 60.000 3.32 0.00 0.00 3.67
6273 10800 1.087771 CCATTTGGCCTCGTCGTACC 61.088 60.000 3.32 0.00 0.00 3.34
6274 10801 1.153706 ATTTGGCCTCGTCGTACCG 60.154 57.895 3.32 0.00 0.00 4.02
6275 10802 3.919973 TTTGGCCTCGTCGTACCGC 62.920 63.158 3.32 0.00 0.00 5.68
6277 10804 4.849329 GGCCTCGTCGTACCGCTG 62.849 72.222 0.00 0.00 0.00 5.18
6298 10825 3.365265 GGACGGGCCAACAGCAAG 61.365 66.667 4.39 0.00 46.50 4.01
6299 10826 4.043200 GACGGGCCAACAGCAAGC 62.043 66.667 4.39 0.00 46.50 4.01
6302 10829 3.376918 GGGCCAACAGCAAGCCTC 61.377 66.667 4.39 0.00 46.31 4.70
6303 10830 3.741476 GGCCAACAGCAAGCCTCG 61.741 66.667 0.00 0.00 46.50 4.63
6304 10831 4.410743 GCCAACAGCAAGCCTCGC 62.411 66.667 0.00 0.00 42.97 5.03
6305 10832 2.670934 CCAACAGCAAGCCTCGCT 60.671 61.111 0.00 0.00 42.56 4.93
6314 10841 4.120244 AGCCTCGCTTTCTCTCCA 57.880 55.556 0.00 0.00 33.89 3.86
6315 10842 1.896694 AGCCTCGCTTTCTCTCCAG 59.103 57.895 0.00 0.00 33.89 3.86
6316 10843 0.613292 AGCCTCGCTTTCTCTCCAGA 60.613 55.000 0.00 0.00 33.89 3.86
6317 10844 0.463620 GCCTCGCTTTCTCTCCAGAT 59.536 55.000 0.00 0.00 0.00 2.90
6318 10845 1.134551 GCCTCGCTTTCTCTCCAGATT 60.135 52.381 0.00 0.00 0.00 2.40
6319 10846 2.101582 GCCTCGCTTTCTCTCCAGATTA 59.898 50.000 0.00 0.00 0.00 1.75
6320 10847 3.712187 CCTCGCTTTCTCTCCAGATTAC 58.288 50.000 0.00 0.00 0.00 1.89
6321 10848 3.383185 CCTCGCTTTCTCTCCAGATTACT 59.617 47.826 0.00 0.00 0.00 2.24
6322 10849 4.580995 CCTCGCTTTCTCTCCAGATTACTA 59.419 45.833 0.00 0.00 0.00 1.82
6323 10850 5.502153 TCGCTTTCTCTCCAGATTACTAC 57.498 43.478 0.00 0.00 0.00 2.73
6324 10851 5.194432 TCGCTTTCTCTCCAGATTACTACT 58.806 41.667 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.159506 CGCCTCATTGGGAAAGGATTTTAA 59.840 41.667 0.00 0.00 35.45 1.52
2 3 2.497273 CGCCTCATTGGGAAAGGATTTT 59.503 45.455 0.00 0.00 35.45 1.82
3 4 2.102578 CGCCTCATTGGGAAAGGATTT 58.897 47.619 0.00 0.00 37.37 2.17
14 15 0.174845 TAAGACGGGTCGCCTCATTG 59.825 55.000 0.00 0.00 34.09 2.82
23 24 1.829222 TCCTCAACCATAAGACGGGTC 59.171 52.381 0.00 0.00 36.05 4.46
25 26 2.434336 TCATCCTCAACCATAAGACGGG 59.566 50.000 0.00 0.00 0.00 5.28
27 28 6.458751 CCAAATTCATCCTCAACCATAAGACG 60.459 42.308 0.00 0.00 0.00 4.18
31 32 7.310361 GGTTTCCAAATTCATCCTCAACCATAA 60.310 37.037 0.00 0.00 32.89 1.90
105 107 1.669440 GGGCGTGAGGACACAAGTA 59.331 57.895 0.00 0.00 46.20 2.24
108 110 4.308458 CGGGGCGTGAGGACACAA 62.308 66.667 0.00 0.00 46.20 3.33
131 133 1.495584 GCTGGAGCAAACGTCGTTGA 61.496 55.000 12.12 0.00 41.59 3.18
133 135 2.594962 CGCTGGAGCAAACGTCGTT 61.595 57.895 4.40 4.40 42.21 3.85
191 193 3.242608 ACACACGTTTCGTCTTCCAAATG 60.243 43.478 0.00 0.00 38.32 2.32
229 252 1.078001 AAACCATACCCGCCTTCCG 60.078 57.895 0.00 0.00 0.00 4.30
233 256 1.632965 GGAGGAAACCATACCCGCCT 61.633 60.000 0.00 0.00 37.03 5.52
270 293 0.842030 TTCAGATCTGGCACCCCACT 60.842 55.000 22.42 0.00 35.79 4.00
329 352 7.278424 CCAAAGGCGAAATCATTGTCATTTAAT 59.722 33.333 0.00 0.00 0.00 1.40
332 355 4.931002 CCAAAGGCGAAATCATTGTCATTT 59.069 37.500 0.00 0.00 0.00 2.32
357 380 0.034670 GCAGACCTCCAAGATGGCTT 60.035 55.000 0.00 0.00 37.47 4.35
363 386 0.767375 AGCTTTGCAGACCTCCAAGA 59.233 50.000 0.00 0.00 0.00 3.02
400 423 0.865218 CTCATCAGAGCTCGACACGC 60.865 60.000 8.37 0.00 34.61 5.34
413 436 4.868172 AAAATGGATCACCTCCTCATCA 57.132 40.909 0.00 0.00 45.21 3.07
441 468 1.139654 GCACCATCAGAGTAGCCATCA 59.860 52.381 0.00 0.00 0.00 3.07
443 470 0.471617 GGCACCATCAGAGTAGCCAT 59.528 55.000 0.00 0.00 41.63 4.40
452 479 2.489329 CACCTAACTTTGGCACCATCAG 59.511 50.000 0.00 0.00 0.00 2.90
463 490 4.274950 CACCAACGTTCATCACCTAACTTT 59.725 41.667 0.00 0.00 0.00 2.66
464 491 3.813166 CACCAACGTTCATCACCTAACTT 59.187 43.478 0.00 0.00 0.00 2.66
467 494 3.181464 TGACACCAACGTTCATCACCTAA 60.181 43.478 0.00 0.00 0.00 2.69
517 544 8.470002 GGATTGACAGCCAAGAAGTAAAAATAT 58.530 33.333 0.00 0.00 38.31 1.28
518 545 7.669722 AGGATTGACAGCCAAGAAGTAAAAATA 59.330 33.333 0.00 0.00 38.31 1.40
519 546 6.494835 AGGATTGACAGCCAAGAAGTAAAAAT 59.505 34.615 0.00 0.00 38.31 1.82
520 547 5.833131 AGGATTGACAGCCAAGAAGTAAAAA 59.167 36.000 0.00 0.00 38.31 1.94
521 548 5.385198 AGGATTGACAGCCAAGAAGTAAAA 58.615 37.500 0.00 0.00 38.31 1.52
522 549 4.985538 AGGATTGACAGCCAAGAAGTAAA 58.014 39.130 0.00 0.00 38.31 2.01
523 550 4.640771 AGGATTGACAGCCAAGAAGTAA 57.359 40.909 0.00 0.00 38.31 2.24
524 551 4.640771 AAGGATTGACAGCCAAGAAGTA 57.359 40.909 0.00 0.00 38.31 2.24
525 552 3.515602 AAGGATTGACAGCCAAGAAGT 57.484 42.857 0.00 0.00 38.31 3.01
526 553 4.861102 AAAAGGATTGACAGCCAAGAAG 57.139 40.909 0.00 0.00 38.31 2.85
553 580 6.659668 ACTGGAAAAATAGAAGAAGGCTAACC 59.340 38.462 0.00 0.00 0.00 2.85
554 581 7.608376 AGACTGGAAAAATAGAAGAAGGCTAAC 59.392 37.037 0.00 0.00 0.00 2.34
555 582 7.690256 AGACTGGAAAAATAGAAGAAGGCTAA 58.310 34.615 0.00 0.00 0.00 3.09
556 583 7.259088 AGACTGGAAAAATAGAAGAAGGCTA 57.741 36.000 0.00 0.00 0.00 3.93
557 584 6.133253 AGACTGGAAAAATAGAAGAAGGCT 57.867 37.500 0.00 0.00 0.00 4.58
558 585 6.207614 ACAAGACTGGAAAAATAGAAGAAGGC 59.792 38.462 0.00 0.00 0.00 4.35
559 586 7.445402 TGACAAGACTGGAAAAATAGAAGAAGG 59.555 37.037 0.00 0.00 0.00 3.46
560 587 8.286097 GTGACAAGACTGGAAAAATAGAAGAAG 58.714 37.037 0.00 0.00 0.00 2.85
561 588 7.042051 CGTGACAAGACTGGAAAAATAGAAGAA 60.042 37.037 0.00 0.00 0.00 2.52
562 589 6.423905 CGTGACAAGACTGGAAAAATAGAAGA 59.576 38.462 0.00 0.00 0.00 2.87
563 590 6.202954 ACGTGACAAGACTGGAAAAATAGAAG 59.797 38.462 0.00 0.00 0.00 2.85
564 591 6.018262 CACGTGACAAGACTGGAAAAATAGAA 60.018 38.462 10.90 0.00 0.00 2.10
565 592 5.465390 CACGTGACAAGACTGGAAAAATAGA 59.535 40.000 10.90 0.00 0.00 1.98
566 593 5.465390 TCACGTGACAAGACTGGAAAAATAG 59.535 40.000 15.76 0.00 0.00 1.73
567 594 5.361427 TCACGTGACAAGACTGGAAAAATA 58.639 37.500 15.76 0.00 0.00 1.40
568 595 4.196193 TCACGTGACAAGACTGGAAAAAT 58.804 39.130 15.76 0.00 0.00 1.82
569 596 3.601435 TCACGTGACAAGACTGGAAAAA 58.399 40.909 15.76 0.00 0.00 1.94
570 597 3.194861 CTCACGTGACAAGACTGGAAAA 58.805 45.455 15.76 0.00 0.00 2.29
571 598 2.167693 ACTCACGTGACAAGACTGGAAA 59.832 45.455 15.76 0.00 0.00 3.13
572 599 1.754803 ACTCACGTGACAAGACTGGAA 59.245 47.619 15.76 0.00 0.00 3.53
573 600 1.337071 GACTCACGTGACAAGACTGGA 59.663 52.381 15.76 0.00 0.00 3.86
574 601 1.067060 TGACTCACGTGACAAGACTGG 59.933 52.381 15.76 4.80 0.00 4.00
575 602 2.492019 TGACTCACGTGACAAGACTG 57.508 50.000 15.76 5.61 0.00 3.51
576 603 3.735237 AATGACTCACGTGACAAGACT 57.265 42.857 15.76 0.00 0.00 3.24
577 604 4.547532 AGTAATGACTCACGTGACAAGAC 58.452 43.478 15.76 13.48 0.00 3.01
578 605 4.848562 AGTAATGACTCACGTGACAAGA 57.151 40.909 15.76 1.91 0.00 3.02
579 606 5.907197 AAAGTAATGACTCACGTGACAAG 57.093 39.130 15.76 8.03 33.58 3.16
580 607 7.956420 ATTAAAGTAATGACTCACGTGACAA 57.044 32.000 15.76 3.15 33.58 3.18
581 608 7.956420 AATTAAAGTAATGACTCACGTGACA 57.044 32.000 15.76 12.94 33.58 3.58
582 609 9.659830 AAAAATTAAAGTAATGACTCACGTGAC 57.340 29.630 15.76 6.69 33.58 3.67
625 652 9.547753 ACGTGTCTCATTTATAGCATAAAGATT 57.452 29.630 0.00 0.00 0.00 2.40
626 653 8.982685 CACGTGTCTCATTTATAGCATAAAGAT 58.017 33.333 7.58 0.00 0.00 2.40
627 654 7.979537 ACACGTGTCTCATTTATAGCATAAAGA 59.020 33.333 17.22 5.07 0.00 2.52
628 655 8.131455 ACACGTGTCTCATTTATAGCATAAAG 57.869 34.615 17.22 0.00 0.00 1.85
629 656 8.487313 AACACGTGTCTCATTTATAGCATAAA 57.513 30.769 23.61 4.52 0.00 1.40
630 657 9.027129 GTAACACGTGTCTCATTTATAGCATAA 57.973 33.333 23.61 0.00 0.00 1.90
631 658 7.650504 GGTAACACGTGTCTCATTTATAGCATA 59.349 37.037 23.61 2.06 0.00 3.14
632 659 6.479001 GGTAACACGTGTCTCATTTATAGCAT 59.521 38.462 23.61 3.14 0.00 3.79
633 660 5.808540 GGTAACACGTGTCTCATTTATAGCA 59.191 40.000 23.61 0.00 0.00 3.49
634 661 5.808540 TGGTAACACGTGTCTCATTTATAGC 59.191 40.000 23.61 16.86 46.17 2.97
666 693 7.279313 CAGGCCTATAAGTACGTACACATTTTT 59.721 37.037 26.55 13.57 0.00 1.94
667 694 6.759827 CAGGCCTATAAGTACGTACACATTTT 59.240 38.462 26.55 14.25 0.00 1.82
668 695 6.097270 TCAGGCCTATAAGTACGTACACATTT 59.903 38.462 26.55 14.60 0.00 2.32
669 696 5.595542 TCAGGCCTATAAGTACGTACACATT 59.404 40.000 26.55 14.93 0.00 2.71
670 697 5.135383 TCAGGCCTATAAGTACGTACACAT 58.865 41.667 26.55 19.62 0.00 3.21
671 698 4.525996 TCAGGCCTATAAGTACGTACACA 58.474 43.478 26.55 14.27 0.00 3.72
672 699 5.335504 GGATCAGGCCTATAAGTACGTACAC 60.336 48.000 26.55 4.23 0.00 2.90
673 700 4.763793 GGATCAGGCCTATAAGTACGTACA 59.236 45.833 26.55 8.35 0.00 2.90
674 701 4.763793 TGGATCAGGCCTATAAGTACGTAC 59.236 45.833 18.10 18.10 0.00 3.67
675 702 4.989277 TGGATCAGGCCTATAAGTACGTA 58.011 43.478 3.98 0.00 0.00 3.57
676 703 3.840991 TGGATCAGGCCTATAAGTACGT 58.159 45.455 3.98 0.00 0.00 3.57
677 704 5.407407 AATGGATCAGGCCTATAAGTACG 57.593 43.478 3.98 0.00 0.00 3.67
678 705 7.331791 CCTAAATGGATCAGGCCTATAAGTAC 58.668 42.308 3.98 0.00 38.35 2.73
679 706 6.443849 CCCTAAATGGATCAGGCCTATAAGTA 59.556 42.308 3.98 0.00 38.35 2.24
680 707 5.251700 CCCTAAATGGATCAGGCCTATAAGT 59.748 44.000 3.98 0.00 38.35 2.24
681 708 5.488919 TCCCTAAATGGATCAGGCCTATAAG 59.511 44.000 3.98 0.00 38.35 1.73
682 709 5.420455 TCCCTAAATGGATCAGGCCTATAA 58.580 41.667 3.98 0.00 38.35 0.98
683 710 5.032846 CTCCCTAAATGGATCAGGCCTATA 58.967 45.833 3.98 0.00 38.35 1.31
684 711 3.848975 CTCCCTAAATGGATCAGGCCTAT 59.151 47.826 3.98 0.00 38.35 2.57
685 712 3.251484 CTCCCTAAATGGATCAGGCCTA 58.749 50.000 3.98 0.00 38.35 3.93
686 713 2.061061 CTCCCTAAATGGATCAGGCCT 58.939 52.381 0.00 0.00 38.35 5.19
687 714 1.074566 CCTCCCTAAATGGATCAGGCC 59.925 57.143 0.00 0.00 38.35 5.19
688 715 1.546548 GCCTCCCTAAATGGATCAGGC 60.547 57.143 0.00 0.00 42.05 4.85
689 716 1.271054 CGCCTCCCTAAATGGATCAGG 60.271 57.143 0.00 0.00 38.35 3.86
690 717 1.879796 GCGCCTCCCTAAATGGATCAG 60.880 57.143 0.00 0.00 38.35 2.90
691 718 0.108585 GCGCCTCCCTAAATGGATCA 59.891 55.000 0.00 0.00 38.35 2.92
692 719 0.398318 AGCGCCTCCCTAAATGGATC 59.602 55.000 2.29 0.00 38.35 3.36
693 720 0.846693 AAGCGCCTCCCTAAATGGAT 59.153 50.000 2.29 0.00 38.35 3.41
694 721 0.180406 GAAGCGCCTCCCTAAATGGA 59.820 55.000 2.29 0.00 38.35 3.41
695 722 0.107214 TGAAGCGCCTCCCTAAATGG 60.107 55.000 2.29 0.00 0.00 3.16
696 723 1.303309 CTGAAGCGCCTCCCTAAATG 58.697 55.000 2.29 0.00 0.00 2.32
697 724 0.181350 CCTGAAGCGCCTCCCTAAAT 59.819 55.000 2.29 0.00 0.00 1.40
698 725 1.602237 CCTGAAGCGCCTCCCTAAA 59.398 57.895 2.29 0.00 0.00 1.85
699 726 2.367202 CCCTGAAGCGCCTCCCTAA 61.367 63.158 2.29 0.00 0.00 2.69
700 727 2.764128 CCCTGAAGCGCCTCCCTA 60.764 66.667 2.29 0.00 0.00 3.53
708 735 3.423154 GAACGTGCCCCTGAAGCG 61.423 66.667 0.00 0.00 0.00 4.68
709 736 3.056328 GGAACGTGCCCCTGAAGC 61.056 66.667 0.00 0.00 0.00 3.86
728 755 1.968493 TGGGCCTATAATGGTCGAGAC 59.032 52.381 4.53 0.00 31.23 3.36
729 756 2.391926 TGGGCCTATAATGGTCGAGA 57.608 50.000 4.53 0.00 31.23 4.04
730 757 3.703001 AATGGGCCTATAATGGTCGAG 57.297 47.619 0.24 0.00 31.23 4.04
731 758 3.517901 CCTAATGGGCCTATAATGGTCGA 59.482 47.826 0.24 0.00 31.23 4.20
732 759 3.517901 TCCTAATGGGCCTATAATGGTCG 59.482 47.826 0.24 0.00 31.23 4.79
733 760 5.685075 CGATCCTAATGGGCCTATAATGGTC 60.685 48.000 0.24 0.00 34.39 4.02
734 761 4.164221 CGATCCTAATGGGCCTATAATGGT 59.836 45.833 0.24 0.00 34.39 3.55
735 762 4.408921 TCGATCCTAATGGGCCTATAATGG 59.591 45.833 0.24 5.33 34.39 3.16
736 763 5.614324 TCGATCCTAATGGGCCTATAATG 57.386 43.478 0.24 0.00 34.39 1.90
737 764 7.306013 TCTATCGATCCTAATGGGCCTATAAT 58.694 38.462 0.24 0.00 34.39 1.28
738 765 6.679542 TCTATCGATCCTAATGGGCCTATAA 58.320 40.000 0.24 0.00 34.39 0.98
739 766 6.102762 TCTCTATCGATCCTAATGGGCCTATA 59.897 42.308 0.24 0.00 34.39 1.31
740 767 5.103473 TCTCTATCGATCCTAATGGGCCTAT 60.103 44.000 0.00 0.00 34.39 2.57
741 768 4.229812 TCTCTATCGATCCTAATGGGCCTA 59.770 45.833 0.00 0.00 34.39 3.93
742 769 3.011821 TCTCTATCGATCCTAATGGGCCT 59.988 47.826 0.00 0.00 34.39 5.19
743 770 3.366396 TCTCTATCGATCCTAATGGGCC 58.634 50.000 0.00 0.00 34.39 5.80
744 771 5.278758 GCTATCTCTATCGATCCTAATGGGC 60.279 48.000 0.00 0.00 34.39 5.36
745 772 5.049060 CGCTATCTCTATCGATCCTAATGGG 60.049 48.000 0.00 0.00 0.00 4.00
746 773 5.529430 ACGCTATCTCTATCGATCCTAATGG 59.471 44.000 0.00 0.00 0.00 3.16
747 774 6.426327 CACGCTATCTCTATCGATCCTAATG 58.574 44.000 0.00 0.00 0.00 1.90
748 775 5.529430 CCACGCTATCTCTATCGATCCTAAT 59.471 44.000 0.00 0.00 0.00 1.73
749 776 4.876679 CCACGCTATCTCTATCGATCCTAA 59.123 45.833 0.00 0.00 0.00 2.69
750 777 4.443621 CCACGCTATCTCTATCGATCCTA 58.556 47.826 0.00 0.00 0.00 2.94
751 778 3.275143 CCACGCTATCTCTATCGATCCT 58.725 50.000 0.00 0.00 0.00 3.24
752 779 2.356382 CCCACGCTATCTCTATCGATCC 59.644 54.545 0.00 0.00 0.00 3.36
753 780 2.223386 GCCCACGCTATCTCTATCGATC 60.223 54.545 0.00 0.00 0.00 3.69
754 781 1.746220 GCCCACGCTATCTCTATCGAT 59.254 52.381 2.16 2.16 0.00 3.59
755 782 1.166129 GCCCACGCTATCTCTATCGA 58.834 55.000 0.00 0.00 0.00 3.59
756 783 0.171455 GGCCCACGCTATCTCTATCG 59.829 60.000 0.00 0.00 34.44 2.92
757 784 1.203523 CTGGCCCACGCTATCTCTATC 59.796 57.143 0.00 0.00 34.44 2.08
758 785 1.203063 TCTGGCCCACGCTATCTCTAT 60.203 52.381 0.00 0.00 34.44 1.98
759 786 0.185175 TCTGGCCCACGCTATCTCTA 59.815 55.000 0.00 0.00 34.44 2.43
760 787 0.687757 TTCTGGCCCACGCTATCTCT 60.688 55.000 0.00 0.00 34.44 3.10
761 788 0.178068 TTTCTGGCCCACGCTATCTC 59.822 55.000 0.00 0.00 34.44 2.75
762 789 0.179000 CTTTCTGGCCCACGCTATCT 59.821 55.000 0.00 0.00 34.44 1.98
763 790 1.440145 GCTTTCTGGCCCACGCTATC 61.440 60.000 0.00 0.00 34.44 2.08
764 791 1.452108 GCTTTCTGGCCCACGCTAT 60.452 57.895 0.00 0.00 34.44 2.97
765 792 2.046314 GCTTTCTGGCCCACGCTA 60.046 61.111 0.00 0.00 34.44 4.26
783 810 2.027745 ACCAGTCACAGCACCTCATTAG 60.028 50.000 0.00 0.00 0.00 1.73
784 811 1.977854 ACCAGTCACAGCACCTCATTA 59.022 47.619 0.00 0.00 0.00 1.90
785 812 0.767375 ACCAGTCACAGCACCTCATT 59.233 50.000 0.00 0.00 0.00 2.57
786 813 0.035881 CACCAGTCACAGCACCTCAT 59.964 55.000 0.00 0.00 0.00 2.90
787 814 1.337384 ACACCAGTCACAGCACCTCA 61.337 55.000 0.00 0.00 0.00 3.86
788 815 0.601311 GACACCAGTCACAGCACCTC 60.601 60.000 0.00 0.00 44.34 3.85
789 816 1.447643 GACACCAGTCACAGCACCT 59.552 57.895 0.00 0.00 44.34 4.00
790 817 4.049393 GACACCAGTCACAGCACC 57.951 61.111 0.00 0.00 44.34 5.01
799 826 1.431243 AGGGAGAAGAGAGACACCAGT 59.569 52.381 0.00 0.00 0.00 4.00
805 832 2.818751 TCAGGAGGGAGAAGAGAGAC 57.181 55.000 0.00 0.00 0.00 3.36
806 833 2.622977 GCTTCAGGAGGGAGAAGAGAGA 60.623 54.545 6.37 0.00 42.95 3.10
807 834 1.756538 GCTTCAGGAGGGAGAAGAGAG 59.243 57.143 6.37 0.00 42.95 3.20
885 915 0.316204 CCAAGACCACCTAACGACGT 59.684 55.000 0.00 0.00 0.00 4.34
901 931 4.680237 CCGTCTGCGTGCTCCCAA 62.680 66.667 0.00 0.00 36.15 4.12
1028 1061 3.554342 CCTGCCTCATAGCCGCCT 61.554 66.667 0.00 0.00 0.00 5.52
1268 1301 3.340034 CAATTAACCCTAGCGAACACCA 58.660 45.455 0.00 0.00 0.00 4.17
1270 1303 2.745281 TGCAATTAACCCTAGCGAACAC 59.255 45.455 0.00 0.00 0.00 3.32
1345 1490 5.980116 ACAGTACGCAGATCAGATGATTAAC 59.020 40.000 0.00 0.00 34.37 2.01
1354 1499 5.626955 CACATGTATACAGTACGCAGATCAG 59.373 44.000 11.91 0.00 0.00 2.90
1382 1527 0.583438 CACAATGATCGGCCTTAGCG 59.417 55.000 0.00 0.00 41.24 4.26
1454 2561 3.443037 CACTCTATCAGCTCGTTCCTTG 58.557 50.000 0.00 0.00 0.00 3.61
1455 2562 2.428890 CCACTCTATCAGCTCGTTCCTT 59.571 50.000 0.00 0.00 0.00 3.36
1456 2563 2.028130 CCACTCTATCAGCTCGTTCCT 58.972 52.381 0.00 0.00 0.00 3.36
1457 2564 1.751924 ACCACTCTATCAGCTCGTTCC 59.248 52.381 0.00 0.00 0.00 3.62
1458 2565 3.182967 CAACCACTCTATCAGCTCGTTC 58.817 50.000 0.00 0.00 0.00 3.95
1459 2566 2.563179 ACAACCACTCTATCAGCTCGTT 59.437 45.455 0.00 0.00 0.00 3.85
1460 2567 2.171840 ACAACCACTCTATCAGCTCGT 58.828 47.619 0.00 0.00 0.00 4.18
1461 2568 2.949451 ACAACCACTCTATCAGCTCG 57.051 50.000 0.00 0.00 0.00 5.03
1462 2569 5.331876 ACTAACAACCACTCTATCAGCTC 57.668 43.478 0.00 0.00 0.00 4.09
1463 2570 7.093289 ACAATACTAACAACCACTCTATCAGCT 60.093 37.037 0.00 0.00 0.00 4.24
1464 2571 7.042335 ACAATACTAACAACCACTCTATCAGC 58.958 38.462 0.00 0.00 0.00 4.26
1465 2572 8.251026 TGACAATACTAACAACCACTCTATCAG 58.749 37.037 0.00 0.00 0.00 2.90
1466 2573 8.129496 TGACAATACTAACAACCACTCTATCA 57.871 34.615 0.00 0.00 0.00 2.15
1467 2574 8.870879 GTTGACAATACTAACAACCACTCTATC 58.129 37.037 0.00 0.00 37.30 2.08
1468 2575 8.372459 TGTTGACAATACTAACAACCACTCTAT 58.628 33.333 0.00 0.00 40.91 1.98
1469 2576 7.728148 TGTTGACAATACTAACAACCACTCTA 58.272 34.615 0.00 0.00 40.91 2.43
1470 2577 6.588204 TGTTGACAATACTAACAACCACTCT 58.412 36.000 0.00 0.00 40.91 3.24
1471 2578 6.854496 TGTTGACAATACTAACAACCACTC 57.146 37.500 0.00 0.00 40.91 3.51
1477 2584 5.736486 TGCGTTGTTGACAATACTAACAA 57.264 34.783 0.00 0.00 40.73 2.83
1478 2585 5.467063 TGATGCGTTGTTGACAATACTAACA 59.533 36.000 0.00 0.00 38.24 2.41
1479 2586 5.922546 TGATGCGTTGTTGACAATACTAAC 58.077 37.500 0.00 0.00 38.24 2.34
1480 2587 6.546972 TTGATGCGTTGTTGACAATACTAA 57.453 33.333 0.00 0.00 38.24 2.24
1481 2588 6.546972 TTTGATGCGTTGTTGACAATACTA 57.453 33.333 0.00 0.00 38.24 1.82
1482 2589 5.431420 TTTGATGCGTTGTTGACAATACT 57.569 34.783 0.00 0.00 38.24 2.12
1483 2590 6.689178 ATTTTGATGCGTTGTTGACAATAC 57.311 33.333 0.00 0.00 38.24 1.89
1484 2591 7.706281 AAATTTTGATGCGTTGTTGACAATA 57.294 28.000 0.00 0.00 38.24 1.90
1496 2603 7.301068 AGTCTCTTCTCTAAATTTTGATGCG 57.699 36.000 2.77 0.00 0.00 4.73
1557 2667 6.294286 GCTCTATTCACTACTCTACCATGGAC 60.294 46.154 21.47 0.00 0.00 4.02
1629 2741 3.545426 GGGACACGAAAAGTCAAACTTCG 60.545 47.826 0.00 2.17 45.65 3.79
1631 2743 2.686405 GGGGACACGAAAAGTCAAACTT 59.314 45.455 0.00 0.00 40.80 2.66
1644 2756 1.834188 AGCCATTAAAAGGGGACACG 58.166 50.000 0.00 0.00 0.00 4.49
1854 3794 8.694394 GTGCTATTGACTTGCTTTTCTAAAAAG 58.306 33.333 7.62 7.62 0.00 2.27
1929 3869 7.923344 CCTAGAAACGTTTGATGTCAGAGATAT 59.077 37.037 20.10 0.00 0.00 1.63
1945 3885 0.037232 GCTGAGGCACCTAGAAACGT 60.037 55.000 0.00 0.00 38.54 3.99
1984 3941 9.303537 ACATAAAGTATCTTTCGCTAAGAAGAC 57.696 33.333 4.30 5.93 45.62 3.01
2008 3966 9.434420 CCCATCAAATTATAAAGCTTTTTCACA 57.566 29.630 18.47 0.00 0.00 3.58
2073 4031 5.144832 TGATATGAGATTCCTTCGGGTGTA 58.855 41.667 0.00 0.00 36.28 2.90
2161 4119 0.318120 TGCATTCGAGAGTGCAGACA 59.682 50.000 17.33 0.00 46.75 3.41
2173 4131 5.582269 TGGTTAAGAGAGAAGAATGCATTCG 59.418 40.000 28.88 0.00 41.56 3.34
2241 5910 4.991687 GTCAGACAGAGGAAAATCTCGTTT 59.008 41.667 0.00 0.00 38.71 3.60
2245 5914 6.226787 TCAAAGTCAGACAGAGGAAAATCTC 58.773 40.000 2.66 0.00 0.00 2.75
2261 5930 3.367932 GCGAAATCACGATCTCAAAGTCA 59.632 43.478 0.00 0.00 35.09 3.41
2403 6075 5.123027 GCAGAGGGATAAGACAACAGAAAAG 59.877 44.000 0.00 0.00 0.00 2.27
2404 6076 5.003804 GCAGAGGGATAAGACAACAGAAAA 58.996 41.667 0.00 0.00 0.00 2.29
2405 6077 4.041567 TGCAGAGGGATAAGACAACAGAAA 59.958 41.667 0.00 0.00 0.00 2.52
2448 6120 0.682855 CCGTTACATTGGGTGGGCAT 60.683 55.000 0.00 0.00 0.00 4.40
2463 6135 1.618343 CCATTTTTCCTGAAGGCCGTT 59.382 47.619 0.00 0.00 34.44 4.44
2466 6138 2.807676 TCTCCATTTTTCCTGAAGGCC 58.192 47.619 0.00 0.00 34.44 5.19
2615 6295 2.093764 TGGCAACCAAACCAAACAAGAG 60.094 45.455 0.00 0.00 31.46 2.85
2623 6303 1.398958 GCTTCCTGGCAACCAAACCA 61.399 55.000 0.00 0.00 30.80 3.67
2672 6352 6.665992 TCTTATACTGAAGAAGTGTGGTGT 57.334 37.500 0.00 0.00 40.26 4.16
2744 6900 7.182060 TCTTTTAGGAAGGGAAAATGCTGTAT 58.818 34.615 0.00 0.00 0.00 2.29
2745 6901 6.548321 TCTTTTAGGAAGGGAAAATGCTGTA 58.452 36.000 0.00 0.00 0.00 2.74
2746 6902 5.393866 TCTTTTAGGAAGGGAAAATGCTGT 58.606 37.500 0.00 0.00 0.00 4.40
2863 7019 8.251026 CCCCAAAGTAAAACTGGAAATATCTTC 58.749 37.037 0.00 0.00 31.38 2.87
2864 7020 7.310423 GCCCCAAAGTAAAACTGGAAATATCTT 60.310 37.037 0.00 0.00 31.38 2.40
2865 7021 6.154534 GCCCCAAAGTAAAACTGGAAATATCT 59.845 38.462 0.00 0.00 31.38 1.98
2887 7043 2.137523 CAATGTTGCAGTTGAAAGCCC 58.862 47.619 3.31 0.00 0.00 5.19
2888 7044 2.137523 CCAATGTTGCAGTTGAAAGCC 58.862 47.619 9.35 0.00 0.00 4.35
2899 7055 2.342910 CTGAGTTCAGCCAATGTTGC 57.657 50.000 0.00 0.00 37.15 4.17
2922 7078 7.933577 TGAGCAGAAAGAAGTTCTTGAATTAGA 59.066 33.333 18.70 0.00 44.64 2.10
2940 7096 2.965831 ACCAGTACAACTCTGAGCAGAA 59.034 45.455 4.19 0.00 36.94 3.02
2941 7097 2.297315 CACCAGTACAACTCTGAGCAGA 59.703 50.000 4.19 0.00 35.20 4.26
3019 7175 4.024472 GTGAAAAAGGAGAGCAGAACAGAC 60.024 45.833 0.00 0.00 0.00 3.51
3204 7360 3.099905 TGGTTTGGTTGTTGAATGTCCA 58.900 40.909 0.00 0.00 0.00 4.02
3214 7370 5.072600 TCAACCTATCTACTGGTTTGGTTGT 59.927 40.000 17.71 0.00 43.27 3.32
3288 7444 3.640407 GCCCAGTGCCAGAGGACA 61.640 66.667 0.00 0.00 0.00 4.02
3303 7459 2.350484 GCTCAACCTAAACACTTTCGCC 60.350 50.000 0.00 0.00 0.00 5.54
3340 7496 6.352016 AGAGTCAAACTTCAGCTCTCATTA 57.648 37.500 0.00 0.00 31.65 1.90
3343 7499 4.250116 GAGAGTCAAACTTCAGCTCTCA 57.750 45.455 13.09 0.00 46.67 3.27
3696 7861 2.172505 TCATGATATCAACCCCAACGCT 59.827 45.455 9.99 0.00 0.00 5.07
3722 7887 1.595929 GCGACAACGAAACCTCCCA 60.596 57.895 0.00 0.00 42.66 4.37
3852 8017 2.595463 CCGTAGCCCCCATGCATG 60.595 66.667 20.19 20.19 0.00 4.06
3853 8018 4.586235 GCCGTAGCCCCCATGCAT 62.586 66.667 0.00 0.00 0.00 3.96
3873 8038 2.486203 CCGAGGAGAATCTACTGGATCG 59.514 54.545 6.04 0.57 32.76 3.69
3915 8080 1.696336 GCTCAGCTGATAAGATCCCCA 59.304 52.381 18.63 0.00 0.00 4.96
3936 8101 4.122149 TTCCGGGCCGCCAATCAT 62.122 61.111 23.20 0.00 0.00 2.45
3966 8131 0.613260 CCGATCTCACCTCCCAAACA 59.387 55.000 0.00 0.00 0.00 2.83
4117 8282 3.581265 AAGGTTTCCACTCCCGTAAAA 57.419 42.857 0.00 0.00 0.00 1.52
4318 8483 4.280929 AGCTTCATGTTCCTACCCAAAAAC 59.719 41.667 0.00 0.00 0.00 2.43
4631 8804 1.388547 TTTCAGCACGGAAGCAAGTT 58.611 45.000 0.00 0.00 36.85 2.66
4632 8805 1.065551 GTTTTCAGCACGGAAGCAAGT 59.934 47.619 0.00 0.00 36.85 3.16
4819 8994 5.013079 TGTCTACCACAATCACTCAAATCCT 59.987 40.000 0.00 0.00 29.30 3.24
4852 9140 9.824216 TTGGCTACAGGTTCTATTATACTCTAT 57.176 33.333 0.00 0.00 0.00 1.98
4962 9262 4.008330 AGATGAAGGCATGTTTGAGTGAG 58.992 43.478 0.00 0.00 34.11 3.51
5105 9412 1.838715 AGAGATGACTTGCTGCCTGAT 59.161 47.619 0.00 0.00 0.00 2.90
5106 9413 1.273759 AGAGATGACTTGCTGCCTGA 58.726 50.000 0.00 0.00 0.00 3.86
5132 9440 8.800370 TGCAGGTAAGATCAACACATTATTAA 57.200 30.769 0.00 0.00 0.00 1.40
5279 9614 2.622436 GCTCTAGTGAAAGCATCCGTT 58.378 47.619 0.00 0.00 38.42 4.44
5347 9682 1.429463 ACTTCGAACTGGATGCGTTC 58.571 50.000 0.00 10.35 37.88 3.95
5402 9739 2.793278 AAGAAACCATGAAACGTGCC 57.207 45.000 0.00 0.00 0.00 5.01
5458 9801 1.301087 CGGCCACCGTAGTTTGTCA 60.301 57.895 2.24 0.00 42.73 3.58
5472 9815 4.259356 AGGAAACTTTATTCTACACGGCC 58.741 43.478 0.00 0.00 37.44 6.13
5508 9851 1.887707 CGAATTGGCGGGGAGTAGC 60.888 63.158 0.00 0.00 0.00 3.58
5521 9893 3.981071 TGAACTCCAGGTCATCGAATT 57.019 42.857 0.00 0.00 0.00 2.17
5535 9907 3.347958 TCAAACAAACGGCATGAACTC 57.652 42.857 0.00 0.00 0.00 3.01
5553 9925 4.128925 AGAATTCGCTAGTCTGCATTCA 57.871 40.909 0.00 0.00 31.72 2.57
5561 9933 2.622436 AGGCACAAGAATTCGCTAGTC 58.378 47.619 0.00 0.00 0.00 2.59
5658 10040 0.391130 GTGGAGGCATGCACGACTAA 60.391 55.000 21.36 0.00 38.05 2.24
5659 10041 1.218047 GTGGAGGCATGCACGACTA 59.782 57.895 21.36 2.38 38.05 2.59
5660 10042 2.046892 GTGGAGGCATGCACGACT 60.047 61.111 21.36 7.00 38.05 4.18
5704 10086 7.828712 AGTACTGTACTACTCAAAGTTGGATC 58.171 38.462 18.42 0.00 37.23 3.36
5726 10112 3.635099 CTCCCATCCCAGTGGAGTA 57.365 57.895 11.95 0.00 46.08 2.59
5732 10118 1.362932 AGTGAGTACTCCCATCCCAGT 59.637 52.381 20.11 0.29 28.79 4.00
5733 10119 2.166907 AGTGAGTACTCCCATCCCAG 57.833 55.000 20.11 0.00 28.79 4.45
5739 10125 7.016153 ACAAATGATTTAGTGAGTACTCCCA 57.984 36.000 20.11 0.00 38.36 4.37
5740 10126 7.923414 AACAAATGATTTAGTGAGTACTCCC 57.077 36.000 20.11 8.98 38.36 4.30
5754 10140 7.665690 TGGCACACTGTAAATAACAAATGATT 58.334 30.769 0.00 0.00 37.74 2.57
5785 10229 5.597806 TGTGCACATGTACTAGTATAAGCC 58.402 41.667 17.42 5.22 0.00 4.35
5787 10231 6.199154 GCACTGTGCACATGTACTAGTATAAG 59.801 42.308 26.70 5.69 44.26 1.73
5804 10248 1.577922 CATGTGGACTGCACTGTGC 59.422 57.895 25.15 25.15 45.29 4.57
5805 10249 1.577922 GCATGTGGACTGCACTGTG 59.422 57.895 2.76 2.76 39.46 3.66
5806 10250 1.601759 GGCATGTGGACTGCACTGT 60.602 57.895 2.08 0.00 41.47 3.55
5807 10251 0.036105 TAGGCATGTGGACTGCACTG 60.036 55.000 2.08 0.00 41.47 3.66
5808 10252 0.036010 GTAGGCATGTGGACTGCACT 60.036 55.000 2.08 0.00 41.47 4.40
5809 10253 1.026718 GGTAGGCATGTGGACTGCAC 61.027 60.000 0.00 0.00 39.36 4.57
5810 10254 1.200760 AGGTAGGCATGTGGACTGCA 61.201 55.000 0.00 0.00 39.36 4.41
5811 10255 0.745845 CAGGTAGGCATGTGGACTGC 60.746 60.000 0.00 0.00 33.87 4.40
5812 10256 0.904649 TCAGGTAGGCATGTGGACTG 59.095 55.000 0.00 0.00 33.87 3.51
5813 10257 0.905357 GTCAGGTAGGCATGTGGACT 59.095 55.000 0.00 0.00 39.32 3.85
5814 10258 0.460284 CGTCAGGTAGGCATGTGGAC 60.460 60.000 0.00 0.00 0.00 4.02
5815 10259 1.613317 CCGTCAGGTAGGCATGTGGA 61.613 60.000 0.00 0.00 0.00 4.02
5816 10260 1.153369 CCGTCAGGTAGGCATGTGG 60.153 63.158 0.00 0.00 0.00 4.17
5817 10261 4.521075 CCGTCAGGTAGGCATGTG 57.479 61.111 0.00 0.00 0.00 3.21
5823 10267 2.579201 CACCAGCCGTCAGGTAGG 59.421 66.667 0.00 0.00 40.50 3.18
5824 10268 2.579201 CCACCAGCCGTCAGGTAG 59.421 66.667 0.00 0.00 40.50 3.18
5825 10269 2.815684 ATCCCACCAGCCGTCAGGTA 62.816 60.000 0.00 0.00 40.50 3.08
5826 10270 4.954118 TCCCACCAGCCGTCAGGT 62.954 66.667 0.00 0.00 40.50 4.00
5827 10271 3.391665 GATCCCACCAGCCGTCAGG 62.392 68.421 0.00 0.00 41.62 3.86
5828 10272 2.187946 GATCCCACCAGCCGTCAG 59.812 66.667 0.00 0.00 0.00 3.51
5829 10273 2.284625 AGATCCCACCAGCCGTCA 60.285 61.111 0.00 0.00 0.00 4.35
5838 10282 0.179702 TGCATGAGAGCAGATCCCAC 59.820 55.000 0.00 0.00 40.11 4.61
5855 10299 4.439563 CCCCAACATACCGTAAGAAAATGC 60.440 45.833 0.00 0.00 43.02 3.56
5857 10301 4.018233 TCCCCCAACATACCGTAAGAAAAT 60.018 41.667 0.00 0.00 43.02 1.82
5858 10302 3.330110 TCCCCCAACATACCGTAAGAAAA 59.670 43.478 0.00 0.00 43.02 2.29
5862 10306 1.474498 GCTCCCCCAACATACCGTAAG 60.474 57.143 0.00 0.00 0.00 2.34
5863 10307 0.542805 GCTCCCCCAACATACCGTAA 59.457 55.000 0.00 0.00 0.00 3.18
5864 10308 1.678598 CGCTCCCCCAACATACCGTA 61.679 60.000 0.00 0.00 0.00 4.02
5865 10309 2.995547 GCTCCCCCAACATACCGT 59.004 61.111 0.00 0.00 0.00 4.83
5866 10310 2.203015 CGCTCCCCCAACATACCG 60.203 66.667 0.00 0.00 0.00 4.02
5867 10311 1.339644 TACCGCTCCCCCAACATACC 61.340 60.000 0.00 0.00 0.00 2.73
5868 10312 0.179065 GTACCGCTCCCCCAACATAC 60.179 60.000 0.00 0.00 0.00 2.39
5869 10313 0.618107 TGTACCGCTCCCCCAACATA 60.618 55.000 0.00 0.00 0.00 2.29
5870 10314 1.279025 ATGTACCGCTCCCCCAACAT 61.279 55.000 0.00 0.00 0.00 2.71
5874 10318 0.618107 TGTAATGTACCGCTCCCCCA 60.618 55.000 0.00 0.00 0.00 4.96
5894 10339 9.922305 CCAAAGTTTATTTTATTGCAAAAACGA 57.078 25.926 1.71 0.00 33.27 3.85
5895 10340 8.677635 GCCAAAGTTTATTTTATTGCAAAAACG 58.322 29.630 1.71 0.00 33.27 3.60
5896 10341 9.508567 TGCCAAAGTTTATTTTATTGCAAAAAC 57.491 25.926 1.71 8.63 31.50 2.43
5897 10342 9.727627 CTGCCAAAGTTTATTTTATTGCAAAAA 57.272 25.926 1.71 0.11 33.15 1.94
5898 10343 9.113838 TCTGCCAAAGTTTATTTTATTGCAAAA 57.886 25.926 1.71 0.00 0.00 2.44
5900 10345 8.555361 GTTCTGCCAAAGTTTATTTTATTGCAA 58.445 29.630 0.00 0.00 0.00 4.08
5901 10346 7.172361 GGTTCTGCCAAAGTTTATTTTATTGCA 59.828 33.333 0.00 0.00 37.17 4.08
5902 10347 7.172361 TGGTTCTGCCAAAGTTTATTTTATTGC 59.828 33.333 0.00 0.00 45.94 3.56
5903 10348 8.600449 TGGTTCTGCCAAAGTTTATTTTATTG 57.400 30.769 0.00 0.00 45.94 1.90
5972 10417 1.371337 TAGCTGCGCAAATGGCTGAG 61.371 55.000 26.58 7.55 41.67 3.35
5973 10418 0.749091 ATAGCTGCGCAAATGGCTGA 60.749 50.000 26.58 13.94 41.67 4.26
5974 10419 0.594028 CATAGCTGCGCAAATGGCTG 60.594 55.000 26.58 11.95 41.67 4.85
5975 10420 1.731700 CATAGCTGCGCAAATGGCT 59.268 52.632 23.04 23.04 41.67 4.75
5976 10421 1.947642 GCATAGCTGCGCAAATGGC 60.948 57.895 21.62 17.32 38.92 4.40
5977 10422 4.314096 GCATAGCTGCGCAAATGG 57.686 55.556 21.62 9.13 38.92 3.16
6000 10447 3.357079 GCAACCCGGTCACTGCTG 61.357 66.667 0.00 0.00 0.00 4.41
6006 10453 2.587322 GATCGATGGCAACCCGGTCA 62.587 60.000 0.54 0.00 40.22 4.02
6014 10461 1.276138 ACAGTCACAGATCGATGGCAA 59.724 47.619 0.54 0.00 0.00 4.52
6034 10481 1.806461 GATGTCTGGCGGGCGAGATA 61.806 60.000 8.61 6.62 33.60 1.98
6048 10495 1.079503 GCGAACTCAACCAGGATGTC 58.920 55.000 0.00 0.00 0.00 3.06
6049 10496 0.687354 AGCGAACTCAACCAGGATGT 59.313 50.000 0.00 0.00 0.00 3.06
6051 10498 0.674895 GCAGCGAACTCAACCAGGAT 60.675 55.000 0.00 0.00 0.00 3.24
6052 10499 1.301716 GCAGCGAACTCAACCAGGA 60.302 57.895 0.00 0.00 0.00 3.86
6053 10500 1.294659 GAGCAGCGAACTCAACCAGG 61.295 60.000 0.00 0.00 34.18 4.45
6055 10502 1.664649 CGAGCAGCGAACTCAACCA 60.665 57.895 0.00 0.00 44.57 3.67
6068 10593 1.260538 ATCTGGAGCAAGGTCGAGCA 61.261 55.000 18.15 0.00 0.00 4.26
6071 10596 0.250234 CCAATCTGGAGCAAGGTCGA 59.750 55.000 0.00 0.00 40.96 4.20
6072 10597 0.036010 ACCAATCTGGAGCAAGGTCG 60.036 55.000 0.00 0.00 40.96 4.79
6073 10598 1.003580 TCACCAATCTGGAGCAAGGTC 59.996 52.381 0.00 0.00 40.96 3.85
6103 10629 7.802117 ACCGGTAGTAGTGGTAGTAGTATAAA 58.198 38.462 4.49 0.00 33.25 1.40
6108 10634 5.896073 ATACCGGTAGTAGTGGTAGTAGT 57.104 43.478 20.91 0.00 41.28 2.73
6112 10638 5.234466 AGGTATACCGGTAGTAGTGGTAG 57.766 47.826 20.91 0.00 41.28 3.18
6115 10641 4.464008 TCAAGGTATACCGGTAGTAGTGG 58.536 47.826 20.91 8.42 42.08 4.00
6116 10642 6.939163 AGTATCAAGGTATACCGGTAGTAGTG 59.061 42.308 20.91 13.43 42.08 2.74
6120 10646 5.945310 TCAGTATCAAGGTATACCGGTAGT 58.055 41.667 20.91 10.68 42.08 2.73
6121 10647 8.749026 ATATCAGTATCAAGGTATACCGGTAG 57.251 38.462 20.91 5.17 42.08 3.18
6122 10648 8.963725 CAATATCAGTATCAAGGTATACCGGTA 58.036 37.037 18.46 18.46 42.08 4.02
6124 10650 6.757010 GCAATATCAGTATCAAGGTATACCGG 59.243 42.308 16.31 12.60 42.08 5.28
6125 10651 7.548097 AGCAATATCAGTATCAAGGTATACCG 58.452 38.462 16.31 3.36 42.08 4.02
6126 10652 7.702772 CGAGCAATATCAGTATCAAGGTATACC 59.297 40.741 14.54 14.54 33.58 2.73
6127 10653 7.221067 GCGAGCAATATCAGTATCAAGGTATAC 59.779 40.741 0.00 0.00 33.33 1.47
6128 10654 7.258441 GCGAGCAATATCAGTATCAAGGTATA 58.742 38.462 0.00 0.00 0.00 1.47
6129 10655 6.102663 GCGAGCAATATCAGTATCAAGGTAT 58.897 40.000 0.00 0.00 0.00 2.73
6130 10656 5.470368 GCGAGCAATATCAGTATCAAGGTA 58.530 41.667 0.00 0.00 0.00 3.08
6131 10657 4.310769 GCGAGCAATATCAGTATCAAGGT 58.689 43.478 0.00 0.00 0.00 3.50
6132 10658 3.681897 GGCGAGCAATATCAGTATCAAGG 59.318 47.826 0.00 0.00 0.00 3.61
6133 10659 3.366121 CGGCGAGCAATATCAGTATCAAG 59.634 47.826 0.00 0.00 0.00 3.02
6134 10660 3.317150 CGGCGAGCAATATCAGTATCAA 58.683 45.455 0.00 0.00 0.00 2.57
6135 10661 2.946564 CGGCGAGCAATATCAGTATCA 58.053 47.619 0.00 0.00 0.00 2.15
6183 10709 1.738099 GACTGGCGACGCAACTGAT 60.738 57.895 23.09 0.00 0.00 2.90
6204 10730 3.429684 GGCTACTCTCTGTTTGGCTACTC 60.430 52.174 0.00 0.00 0.00 2.59
6207 10733 2.233922 GTGGCTACTCTCTGTTTGGCTA 59.766 50.000 0.00 0.00 0.00 3.93
6213 10739 0.889306 GGACGTGGCTACTCTCTGTT 59.111 55.000 0.00 0.00 0.00 3.16
6220 10746 1.681327 ATGGACGGACGTGGCTACT 60.681 57.895 0.53 0.00 0.00 2.57
6222 10748 2.717044 CCATGGACGGACGTGGCTA 61.717 63.158 5.56 0.00 40.38 3.93
6223 10749 4.082523 CCATGGACGGACGTGGCT 62.083 66.667 5.56 0.00 40.38 4.75
6229 10756 0.459063 GTAACGGACCATGGACGGAC 60.459 60.000 27.86 22.39 0.00 4.79
6241 10768 2.494073 GCCAAATGGGAAATGTAACGGA 59.506 45.455 0.90 0.00 40.01 4.69
6242 10769 2.418060 GGCCAAATGGGAAATGTAACGG 60.418 50.000 0.00 0.00 40.01 4.44
6243 10770 2.495669 AGGCCAAATGGGAAATGTAACG 59.504 45.455 5.01 0.00 40.01 3.18
6244 10771 3.428862 CGAGGCCAAATGGGAAATGTAAC 60.429 47.826 5.01 0.00 40.01 2.50
6245 10772 2.757868 CGAGGCCAAATGGGAAATGTAA 59.242 45.455 5.01 0.00 40.01 2.41
6246 10773 2.291282 ACGAGGCCAAATGGGAAATGTA 60.291 45.455 5.01 0.00 40.01 2.29
6247 10774 1.185315 CGAGGCCAAATGGGAAATGT 58.815 50.000 5.01 0.00 40.01 2.71
6248 10775 1.134946 GACGAGGCCAAATGGGAAATG 59.865 52.381 5.01 0.00 40.01 2.32
6249 10776 1.474330 GACGAGGCCAAATGGGAAAT 58.526 50.000 5.01 0.00 40.01 2.17
6250 10777 0.958382 CGACGAGGCCAAATGGGAAA 60.958 55.000 5.01 0.00 40.01 3.13
6251 10778 1.376683 CGACGAGGCCAAATGGGAA 60.377 57.895 5.01 0.00 40.01 3.97
6252 10779 1.259142 TACGACGAGGCCAAATGGGA 61.259 55.000 5.01 0.00 40.01 4.37
6253 10780 1.087771 GTACGACGAGGCCAAATGGG 61.088 60.000 5.01 0.00 40.85 4.00
6254 10781 1.087771 GGTACGACGAGGCCAAATGG 61.088 60.000 5.01 0.00 38.53 3.16
6255 10782 2.380081 GGTACGACGAGGCCAAATG 58.620 57.895 5.01 0.00 0.00 2.32
6256 10783 4.926207 GGTACGACGAGGCCAAAT 57.074 55.556 5.01 0.00 0.00 2.32
6281 10808 3.365265 CTTGCTGTTGGCCCGTCC 61.365 66.667 0.00 0.00 40.92 4.79
6282 10809 4.043200 GCTTGCTGTTGGCCCGTC 62.043 66.667 0.00 0.00 40.92 4.79
6285 10812 3.376918 GAGGCTTGCTGTTGGCCC 61.377 66.667 0.00 0.00 46.31 5.80
6286 10813 3.741476 CGAGGCTTGCTGTTGGCC 61.741 66.667 0.00 0.00 45.57 5.36
6287 10814 4.410743 GCGAGGCTTGCTGTTGGC 62.411 66.667 19.65 0.00 42.22 4.52
6288 10815 2.670934 AGCGAGGCTTGCTGTTGG 60.671 61.111 28.12 0.00 42.14 3.77
6297 10824 0.613292 TCTGGAGAGAAAGCGAGGCT 60.613 55.000 0.00 0.00 42.56 4.58
6298 10825 0.463620 ATCTGGAGAGAAAGCGAGGC 59.536 55.000 0.00 0.00 0.00 4.70
6299 10826 2.977772 AATCTGGAGAGAAAGCGAGG 57.022 50.000 0.00 0.00 0.00 4.63
6300 10827 4.647424 AGTAATCTGGAGAGAAAGCGAG 57.353 45.455 0.00 0.00 0.00 5.03
6301 10828 5.194432 AGTAGTAATCTGGAGAGAAAGCGA 58.806 41.667 0.00 0.00 0.00 4.93
6302 10829 5.508200 AGTAGTAATCTGGAGAGAAAGCG 57.492 43.478 0.00 0.00 0.00 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.