Multiple sequence alignment - TraesCS5B01G251800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G251800 chr5B 100.000 8105 0 0 1 8105 434407906 434416010 0.000000e+00 14968.0
1 TraesCS5B01G251800 chr5B 94.019 1906 64 25 3438 5299 434669458 434671357 0.000000e+00 2843.0
2 TraesCS5B01G251800 chr5B 92.809 1335 46 18 5292 6593 434671543 434672860 0.000000e+00 1888.0
3 TraesCS5B01G251800 chr5B 89.905 1367 115 14 1332 2693 434667252 434668600 0.000000e+00 1738.0
4 TraesCS5B01G251800 chr5B 96.252 747 23 4 2690 3436 434668637 434669378 0.000000e+00 1219.0
5 TraesCS5B01G251800 chr5B 90.604 298 20 5 1010 1299 434666500 434666797 9.860000e-104 388.0
6 TraesCS5B01G251800 chr5A 95.100 3163 106 14 2690 5835 469049677 469052807 0.000000e+00 4937.0
7 TraesCS5B01G251800 chr5A 94.141 2270 90 20 5844 8105 469052854 469055088 0.000000e+00 3415.0
8 TraesCS5B01G251800 chr5A 91.860 1376 93 15 1332 2693 469048270 469049640 0.000000e+00 1903.0
9 TraesCS5B01G251800 chr5A 92.601 419 26 2 830 1248 469047535 469047948 1.510000e-166 597.0
10 TraesCS5B01G251800 chr5A 94.156 308 10 4 2 305 469046538 469046841 5.730000e-126 462.0
11 TraesCS5B01G251800 chr5D 90.162 2348 139 47 3504 5835 367235708 367237979 0.000000e+00 2972.0
12 TraesCS5B01G251800 chr5D 92.737 1363 86 11 1332 2681 367233446 367234808 0.000000e+00 1956.0
13 TraesCS5B01G251800 chr5D 93.802 1210 64 10 6905 8105 367238889 367240096 0.000000e+00 1808.0
14 TraesCS5B01G251800 chr5D 94.337 830 43 3 2690 3517 367234865 367235692 0.000000e+00 1269.0
15 TraesCS5B01G251800 chr5D 91.234 559 28 8 5860 6415 367238037 367238577 0.000000e+00 741.0
16 TraesCS5B01G251800 chr5D 87.119 427 30 15 877 1298 367232592 367232998 2.060000e-125 460.0
17 TraesCS5B01G251800 chr5D 92.337 261 7 6 22 282 367228787 367229034 7.730000e-95 359.0
18 TraesCS5B01G251800 chr5D 91.667 168 8 2 6784 6945 367238732 367238899 2.280000e-55 228.0
19 TraesCS5B01G251800 chr5D 100.000 30 0 0 6569 6598 384475767 384475738 1.000000e-03 56.5
20 TraesCS5B01G251800 chr2D 85.946 370 28 11 1 359 433866870 433866514 2.760000e-99 374.0
21 TraesCS5B01G251800 chr2D 100.000 30 0 0 6569 6598 5322702 5322731 1.000000e-03 56.5
22 TraesCS5B01G251800 chr2A 83.005 406 35 16 1 386 553276207 553276598 3.620000e-88 337.0
23 TraesCS5B01G251800 chr2B 82.294 401 40 16 1 386 512912933 512912549 1.310000e-82 318.0
24 TraesCS5B01G251800 chr4B 100.000 33 0 0 6569 6601 180943633 180943601 2.440000e-05 62.1
25 TraesCS5B01G251800 chr1A 100.000 32 0 0 6569 6600 480430402 480430371 8.780000e-05 60.2
26 TraesCS5B01G251800 chr4A 100.000 30 0 0 6569 6598 455023757 455023728 1.000000e-03 56.5
27 TraesCS5B01G251800 chr4A 100.000 30 0 0 6569 6598 617484954 617484983 1.000000e-03 56.5
28 TraesCS5B01G251800 chr1D 96.970 33 0 1 6572 6603 367412888 367412856 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G251800 chr5B 434407906 434416010 8104 False 14968.000 14968 100.000000 1 8105 1 chr5B.!!$F1 8104
1 TraesCS5B01G251800 chr5B 434666500 434672860 6360 False 1615.200 2843 92.717800 1010 6593 5 chr5B.!!$F2 5583
2 TraesCS5B01G251800 chr5A 469046538 469055088 8550 False 2262.800 4937 93.571600 2 8105 5 chr5A.!!$F1 8103
3 TraesCS5B01G251800 chr5D 367228787 367240096 11309 False 1224.125 2972 91.674375 22 8105 8 chr5D.!!$F1 8083

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
558 664 0.175531 GTGCTGGGTTGTTGTGCTTT 59.824 50.000 0.00 0.00 0.00 3.51 F
1145 4193 0.179045 ATGGTATCGCAGGCTGTTCC 60.179 55.000 17.16 11.55 0.00 3.62 F
1308 4367 0.319083 TGGTCGGTTATCGCTGTTGT 59.681 50.000 0.00 0.00 39.05 3.32 F
1309 4368 0.997196 GGTCGGTTATCGCTGTTGTC 59.003 55.000 0.00 0.00 39.05 3.18 F
2909 6478 1.171308 CTGAAGCCAATGTCACCAGG 58.829 55.000 0.00 0.00 0.00 4.45 F
3687 7380 2.009042 GCTCGGCTGCTCTGTTTATGT 61.009 52.381 0.00 0.00 0.00 2.29 F
4976 8719 0.955919 CACCTGGCGGGAAGACTTTC 60.956 60.000 21.81 0.00 38.76 2.62 F
5899 9904 0.595095 CAGAAGGAAAGCACTGCCAC 59.405 55.000 0.00 0.00 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 4985 0.511221 CTTGTCCCTGCGTAAACACG 59.489 55.000 0.00 0.0 0.00 4.49 R
2546 6067 3.348119 TGCCGCATTTAACATTCTGGTA 58.652 40.909 0.00 0.0 0.00 3.25 R
2623 6144 4.343231 TCAGTATCACATGCCCACATTTT 58.657 39.130 0.00 0.0 32.87 1.82 R
3258 6827 7.399245 AGGAAGTAAAGCAAACTTACAACAA 57.601 32.000 9.82 0.0 39.80 2.83 R
4192 7889 1.691976 TCTCGCTTCCTTGGACTGAAA 59.308 47.619 0.00 0.0 0.00 2.69 R
5184 8931 1.740025 GCAGGCTGTCAGGAATAACAC 59.260 52.381 17.16 0.0 0.00 3.32 R
6739 10766 1.663695 ACAAGTGTTACAGCACGCTT 58.336 45.000 0.00 0.0 46.27 4.68 R
7262 11336 1.356124 AGCAAGATGGACCACAGAGT 58.644 50.000 0.00 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 7.296628 AGGAATGATCTATGTAGGAGAACAC 57.703 40.000 0.00 0.00 29.67 3.32
228 233 4.847198 TGATGTATCAGAGTGGCAACATT 58.153 39.130 0.00 0.00 39.84 2.71
318 352 5.300792 TGGACTGTTTTGTAGTGGAAATTCC 59.699 40.000 4.79 4.79 36.96 3.01
319 353 5.300792 GGACTGTTTTGTAGTGGAAATTCCA 59.699 40.000 11.23 11.23 45.98 3.53
344 380 5.749596 TCATTTGTGTAGTTGGTGTCAAG 57.250 39.130 0.00 0.00 32.92 3.02
358 394 5.250200 TGGTGTCAAGTGTAACAGAAAAGT 58.750 37.500 0.00 0.00 41.43 2.66
362 398 4.638865 GTCAAGTGTAACAGAAAAGTGGGT 59.361 41.667 0.00 0.00 41.43 4.51
402 438 4.576463 GTGAAGATGGAATTTGATACGGCT 59.424 41.667 0.00 0.00 0.00 5.52
403 439 5.758296 GTGAAGATGGAATTTGATACGGCTA 59.242 40.000 0.00 0.00 0.00 3.93
422 458 8.819643 ACGGCTATAGAGAAATAATCAAGAAC 57.180 34.615 3.21 0.00 0.00 3.01
442 496 7.349412 AGAACTAGTACAGTCAAGTCAAAGT 57.651 36.000 0.00 0.00 36.04 2.66
456 510 4.338879 AGTCAAAGTGAAGGAATGGATGG 58.661 43.478 0.00 0.00 0.00 3.51
457 511 3.445096 GTCAAAGTGAAGGAATGGATGGG 59.555 47.826 0.00 0.00 0.00 4.00
458 512 3.333381 TCAAAGTGAAGGAATGGATGGGA 59.667 43.478 0.00 0.00 0.00 4.37
459 513 3.659183 AAGTGAAGGAATGGATGGGAG 57.341 47.619 0.00 0.00 0.00 4.30
460 514 1.849039 AGTGAAGGAATGGATGGGAGG 59.151 52.381 0.00 0.00 0.00 4.30
461 515 1.133668 GTGAAGGAATGGATGGGAGGG 60.134 57.143 0.00 0.00 0.00 4.30
463 517 1.423161 GAAGGAATGGATGGGAGGGAG 59.577 57.143 0.00 0.00 0.00 4.30
466 520 1.700186 GGAATGGATGGGAGGGAGTAC 59.300 57.143 0.00 0.00 0.00 2.73
468 522 2.587060 ATGGATGGGAGGGAGTACAA 57.413 50.000 0.00 0.00 0.00 2.41
473 527 3.910627 GGATGGGAGGGAGTACAATACAT 59.089 47.826 0.00 0.00 0.00 2.29
484 538 4.770795 AGTACAATACATGCAGGGAAGAC 58.229 43.478 2.31 0.00 0.00 3.01
487 541 0.530650 ATACATGCAGGGAAGACGCG 60.531 55.000 3.53 3.53 0.00 6.01
492 546 4.473520 CAGGGAAGACGCGGCCAT 62.474 66.667 9.25 0.00 0.00 4.40
495 549 3.195698 GGAAGACGCGGCCATGAC 61.196 66.667 9.25 0.00 0.00 3.06
503 557 2.580815 CGGCCATGACAGAGAGCA 59.419 61.111 2.24 0.00 0.00 4.26
509 615 0.179078 CATGACAGAGAGCAGCCCTC 60.179 60.000 0.00 0.00 41.07 4.30
530 636 0.861837 CAGCAGTGACAGAACGGTTC 59.138 55.000 12.91 12.91 0.00 3.62
538 644 4.655527 AGAACGGTTCTGTCGCTG 57.344 55.556 21.86 0.00 38.91 5.18
539 645 1.006102 AGAACGGTTCTGTCGCTGG 60.006 57.895 21.86 0.00 38.91 4.85
540 646 1.300697 GAACGGTTCTGTCGCTGGT 60.301 57.895 13.49 0.00 0.00 4.00
541 647 1.557443 GAACGGTTCTGTCGCTGGTG 61.557 60.000 13.49 0.00 0.00 4.17
543 649 2.031163 GGTTCTGTCGCTGGTGCT 59.969 61.111 0.00 0.00 36.97 4.40
544 650 2.320587 GGTTCTGTCGCTGGTGCTG 61.321 63.158 0.00 0.00 36.97 4.41
545 651 2.031012 TTCTGTCGCTGGTGCTGG 59.969 61.111 0.00 0.00 36.97 4.85
546 652 3.535629 TTCTGTCGCTGGTGCTGGG 62.536 63.158 0.00 0.00 36.97 4.45
548 654 3.832237 CTGTCGCTGGTGCTGGGTT 62.832 63.158 0.00 0.00 36.97 4.11
549 655 3.357079 GTCGCTGGTGCTGGGTTG 61.357 66.667 0.00 0.00 36.97 3.77
551 657 2.906897 CGCTGGTGCTGGGTTGTT 60.907 61.111 0.00 0.00 36.97 2.83
552 658 2.730094 GCTGGTGCTGGGTTGTTG 59.270 61.111 0.00 0.00 36.03 3.33
554 660 1.735360 CTGGTGCTGGGTTGTTGTG 59.265 57.895 0.00 0.00 0.00 3.33
557 663 1.675720 GGTGCTGGGTTGTTGTGCTT 61.676 55.000 0.00 0.00 0.00 3.91
558 664 0.175531 GTGCTGGGTTGTTGTGCTTT 59.824 50.000 0.00 0.00 0.00 3.51
561 667 1.269257 GCTGGGTTGTTGTGCTTTCTC 60.269 52.381 0.00 0.00 0.00 2.87
562 668 2.301346 CTGGGTTGTTGTGCTTTCTCT 58.699 47.619 0.00 0.00 0.00 3.10
563 669 2.291741 CTGGGTTGTTGTGCTTTCTCTC 59.708 50.000 0.00 0.00 0.00 3.20
564 670 2.297701 GGGTTGTTGTGCTTTCTCTCA 58.702 47.619 0.00 0.00 0.00 3.27
565 671 2.887152 GGGTTGTTGTGCTTTCTCTCAT 59.113 45.455 0.00 0.00 0.00 2.90
566 672 3.304928 GGGTTGTTGTGCTTTCTCTCATG 60.305 47.826 0.00 0.00 0.00 3.07
567 673 3.565482 GGTTGTTGTGCTTTCTCTCATGA 59.435 43.478 0.00 0.00 0.00 3.07
569 675 5.152097 GTTGTTGTGCTTTCTCTCATGATG 58.848 41.667 0.00 0.00 0.00 3.07
570 676 3.754850 TGTTGTGCTTTCTCTCATGATGG 59.245 43.478 0.00 0.00 0.00 3.51
579 1259 3.646534 TCTCTCATGATGGCTTCACCTA 58.353 45.455 5.09 0.00 37.11 3.08
583 1263 6.499699 TCTCTCATGATGGCTTCACCTAATAT 59.500 38.462 5.09 0.00 37.11 1.28
596 1276 8.301002 GCTTCACCTAATATTAGAGAGAATCGT 58.699 37.037 21.75 7.34 42.67 3.73
598 1278 8.919777 TCACCTAATATTAGAGAGAATCGTCA 57.080 34.615 21.75 0.00 42.67 4.35
614 2052 7.352739 AGAATCGTCATATCCGCATTTTAAAC 58.647 34.615 0.00 0.00 0.00 2.01
618 2056 7.129622 TCGTCATATCCGCATTTTAAACAATC 58.870 34.615 0.00 0.00 0.00 2.67
619 2057 6.084939 CGTCATATCCGCATTTTAAACAATCG 59.915 38.462 0.00 0.00 0.00 3.34
620 2058 6.910433 GTCATATCCGCATTTTAAACAATCGT 59.090 34.615 0.00 0.00 0.00 3.73
654 2767 4.889832 AGAAGTCAGTCTTTTGTTGCTG 57.110 40.909 0.00 0.00 36.40 4.41
655 2768 3.065925 AGAAGTCAGTCTTTTGTTGCTGC 59.934 43.478 0.00 0.00 36.40 5.25
658 2771 2.099756 GTCAGTCTTTTGTTGCTGCCTT 59.900 45.455 0.00 0.00 0.00 4.35
659 2772 2.760092 TCAGTCTTTTGTTGCTGCCTTT 59.240 40.909 0.00 0.00 0.00 3.11
660 2773 3.951037 TCAGTCTTTTGTTGCTGCCTTTA 59.049 39.130 0.00 0.00 0.00 1.85
661 2774 4.044426 CAGTCTTTTGTTGCTGCCTTTAC 58.956 43.478 0.00 0.00 0.00 2.01
662 2775 3.954258 AGTCTTTTGTTGCTGCCTTTACT 59.046 39.130 0.00 0.00 0.00 2.24
663 2776 4.036852 AGTCTTTTGTTGCTGCCTTTACTC 59.963 41.667 0.00 0.00 0.00 2.59
664 2777 4.036852 GTCTTTTGTTGCTGCCTTTACTCT 59.963 41.667 0.00 0.00 0.00 3.24
665 2778 4.644685 TCTTTTGTTGCTGCCTTTACTCTT 59.355 37.500 0.00 0.00 0.00 2.85
666 2779 5.127031 TCTTTTGTTGCTGCCTTTACTCTTT 59.873 36.000 0.00 0.00 0.00 2.52
667 2780 4.568152 TTGTTGCTGCCTTTACTCTTTC 57.432 40.909 0.00 0.00 0.00 2.62
668 2781 2.884639 TGTTGCTGCCTTTACTCTTTCC 59.115 45.455 0.00 0.00 0.00 3.13
669 2782 3.149981 GTTGCTGCCTTTACTCTTTCCT 58.850 45.455 0.00 0.00 0.00 3.36
670 2783 4.202419 TGTTGCTGCCTTTACTCTTTCCTA 60.202 41.667 0.00 0.00 0.00 2.94
671 2784 4.634012 TGCTGCCTTTACTCTTTCCTAA 57.366 40.909 0.00 0.00 0.00 2.69
672 2785 4.579869 TGCTGCCTTTACTCTTTCCTAAG 58.420 43.478 0.00 0.00 0.00 2.18
673 2786 4.286032 TGCTGCCTTTACTCTTTCCTAAGA 59.714 41.667 0.00 0.00 38.06 2.10
674 2787 4.632251 GCTGCCTTTACTCTTTCCTAAGAC 59.368 45.833 0.00 0.00 35.49 3.01
675 2788 5.794894 CTGCCTTTACTCTTTCCTAAGACA 58.205 41.667 0.00 0.00 35.49 3.41
677 2790 5.542635 TGCCTTTACTCTTTCCTAAGACAGA 59.457 40.000 0.00 0.00 35.49 3.41
680 2793 7.608376 GCCTTTACTCTTTCCTAAGACAGAAAT 59.392 37.037 0.00 0.00 35.49 2.17
685 2798 8.616799 ACTCTTTCCTAAGACAGAAATATCCT 57.383 34.615 0.00 0.00 35.49 3.24
686 2799 9.716556 ACTCTTTCCTAAGACAGAAATATCCTA 57.283 33.333 0.00 0.00 35.49 2.94
687 2800 9.974980 CTCTTTCCTAAGACAGAAATATCCTAC 57.025 37.037 0.00 0.00 35.49 3.18
688 2801 9.716556 TCTTTCCTAAGACAGAAATATCCTACT 57.283 33.333 0.00 0.00 35.49 2.57
689 2802 9.757227 CTTTCCTAAGACAGAAATATCCTACTG 57.243 37.037 0.00 0.00 31.89 2.74
692 2805 8.696374 TCCTAAGACAGAAATATCCTACTGTTG 58.304 37.037 0.00 0.00 42.45 3.33
693 2806 7.928706 CCTAAGACAGAAATATCCTACTGTTGG 59.071 40.741 1.58 1.58 42.45 3.77
694 2807 6.875972 AGACAGAAATATCCTACTGTTGGT 57.124 37.500 8.11 0.00 42.45 3.67
695 2808 7.973048 AGACAGAAATATCCTACTGTTGGTA 57.027 36.000 8.11 1.55 42.45 3.25
696 2809 8.375493 AGACAGAAATATCCTACTGTTGGTAA 57.625 34.615 8.11 0.00 42.45 2.85
698 2811 7.039882 ACAGAAATATCCTACTGTTGGTAACG 58.960 38.462 8.11 0.00 40.03 3.18
700 2813 7.435488 CAGAAATATCCTACTGTTGGTAACGAG 59.565 40.741 8.11 0.00 42.51 4.18
701 2814 6.786967 AATATCCTACTGTTGGTAACGAGT 57.213 37.500 8.11 0.00 42.51 4.18
702 2815 7.886629 AATATCCTACTGTTGGTAACGAGTA 57.113 36.000 8.11 0.00 42.51 2.59
703 2816 8.474710 AATATCCTACTGTTGGTAACGAGTAT 57.525 34.615 8.11 0.00 42.51 2.12
704 2817 6.786967 ATCCTACTGTTGGTAACGAGTATT 57.213 37.500 8.11 0.00 42.51 1.89
705 2818 7.886629 ATCCTACTGTTGGTAACGAGTATTA 57.113 36.000 8.11 0.00 42.51 0.98
706 2819 7.886629 TCCTACTGTTGGTAACGAGTATTAT 57.113 36.000 8.11 0.00 42.51 1.28
707 2820 8.297470 TCCTACTGTTGGTAACGAGTATTATT 57.703 34.615 8.11 0.00 42.51 1.40
708 2821 8.752187 TCCTACTGTTGGTAACGAGTATTATTT 58.248 33.333 8.11 0.00 42.51 1.40
709 2822 9.028185 CCTACTGTTGGTAACGAGTATTATTTC 57.972 37.037 0.00 0.00 42.51 2.17
725 3771 9.462606 AGTATTATTTCCTCTTTGACGGATTTT 57.537 29.630 0.00 0.00 0.00 1.82
731 3777 4.285003 TCCTCTTTGACGGATTTTCAGGTA 59.715 41.667 0.00 0.00 0.00 3.08
755 3801 3.964347 GCTCGTTTGGACTCGTTTTAAAC 59.036 43.478 0.00 0.00 0.00 2.01
786 3833 4.934316 GGGGACCGCTAGAGAGAT 57.066 61.111 0.24 0.00 40.86 2.75
821 3868 6.118195 CGAACCGCTAAATAGAATTTGTACG 58.882 40.000 0.00 0.00 0.00 3.67
822 3869 6.020440 CGAACCGCTAAATAGAATTTGTACGA 60.020 38.462 0.00 0.00 0.00 3.43
823 3870 6.823678 ACCGCTAAATAGAATTTGTACGAG 57.176 37.500 0.00 0.00 0.00 4.18
824 3871 5.751990 ACCGCTAAATAGAATTTGTACGAGG 59.248 40.000 0.00 0.00 0.00 4.63
825 3872 5.333111 CCGCTAAATAGAATTTGTACGAGGC 60.333 44.000 0.00 0.00 0.00 4.70
826 3873 5.333111 CGCTAAATAGAATTTGTACGAGGCC 60.333 44.000 0.00 0.00 0.00 5.19
827 3874 5.758784 GCTAAATAGAATTTGTACGAGGCCT 59.241 40.000 3.86 3.86 0.00 5.19
828 3875 6.073711 GCTAAATAGAATTTGTACGAGGCCTC 60.074 42.308 23.79 23.79 0.00 4.70
868 3915 2.103263 AGGCGTCAGAGAGAACAAAGTT 59.897 45.455 0.00 0.00 0.00 2.66
878 3925 2.952310 GAGAACAAAGTTCAACAGGGCT 59.048 45.455 11.92 0.00 0.00 5.19
952 4000 1.512201 TTCCCCCTCGTCTCCCTGTA 61.512 60.000 0.00 0.00 0.00 2.74
957 4005 1.038130 CCTCGTCTCCCTGTACCCTG 61.038 65.000 0.00 0.00 0.00 4.45
967 4015 0.252284 CTGTACCCTGTCCCTCCACT 60.252 60.000 0.00 0.00 0.00 4.00
1008 4056 2.515523 CCCAGCAGAATGGAGGCG 60.516 66.667 0.00 0.00 43.57 5.52
1130 4178 2.597340 CCCGCATTCCTCCATGGT 59.403 61.111 12.58 0.00 37.07 3.55
1145 4193 0.179045 ATGGTATCGCAGGCTGTTCC 60.179 55.000 17.16 11.55 0.00 3.62
1202 4259 1.803453 TTTTGGGCAGGGAGGAGCAT 61.803 55.000 0.00 0.00 0.00 3.79
1257 4316 2.125512 GCAGGTACAGTGGCGGAG 60.126 66.667 0.00 0.00 0.00 4.63
1281 4340 3.241426 CGATGTTGCAGCTTAATTTTGCG 60.241 43.478 1.17 0.00 40.62 4.85
1290 4349 5.196825 CAGCTTAATTTTGCGGTTTGTTTG 58.803 37.500 0.00 0.00 0.00 2.93
1294 4353 1.630148 TTTTGCGGTTTGTTTGGTCG 58.370 45.000 0.00 0.00 0.00 4.79
1299 4358 1.267533 GCGGTTTGTTTGGTCGGTTAT 59.732 47.619 0.00 0.00 0.00 1.89
1300 4359 2.666344 GCGGTTTGTTTGGTCGGTTATC 60.666 50.000 0.00 0.00 0.00 1.75
1301 4360 2.411806 CGGTTTGTTTGGTCGGTTATCG 60.412 50.000 0.00 0.00 40.90 2.92
1303 4362 2.172851 TTGTTTGGTCGGTTATCGCT 57.827 45.000 0.00 0.00 39.05 4.93
1304 4363 1.434555 TGTTTGGTCGGTTATCGCTG 58.565 50.000 0.00 0.00 39.05 5.18
1305 4364 1.270412 TGTTTGGTCGGTTATCGCTGT 60.270 47.619 0.00 0.00 39.05 4.40
1308 4367 0.319083 TGGTCGGTTATCGCTGTTGT 59.681 50.000 0.00 0.00 39.05 3.32
1309 4368 0.997196 GGTCGGTTATCGCTGTTGTC 59.003 55.000 0.00 0.00 39.05 3.18
1310 4369 1.403780 GGTCGGTTATCGCTGTTGTCT 60.404 52.381 0.00 0.00 39.05 3.41
1311 4370 1.654105 GTCGGTTATCGCTGTTGTCTG 59.346 52.381 0.00 0.00 39.05 3.51
1312 4371 1.542472 TCGGTTATCGCTGTTGTCTGA 59.458 47.619 0.00 0.00 39.05 3.27
1314 4373 2.535984 CGGTTATCGCTGTTGTCTGATC 59.464 50.000 0.00 0.00 0.00 2.92
1315 4374 2.866762 GGTTATCGCTGTTGTCTGATCC 59.133 50.000 0.00 0.00 0.00 3.36
1316 4375 3.521560 GTTATCGCTGTTGTCTGATCCA 58.478 45.455 0.00 0.00 0.00 3.41
1317 4376 2.768253 ATCGCTGTTGTCTGATCCAA 57.232 45.000 0.00 0.00 0.00 3.53
1319 4378 3.057969 TCGCTGTTGTCTGATCCAAAT 57.942 42.857 0.00 0.00 0.00 2.32
1321 4380 3.005554 CGCTGTTGTCTGATCCAAATCT 58.994 45.455 0.00 0.00 32.75 2.40
1322 4381 3.063180 CGCTGTTGTCTGATCCAAATCTC 59.937 47.826 0.00 0.00 32.75 2.75
1323 4382 3.376546 GCTGTTGTCTGATCCAAATCTCC 59.623 47.826 0.00 0.00 32.75 3.71
1325 4384 4.582869 TGTTGTCTGATCCAAATCTCCTG 58.417 43.478 0.00 0.00 32.75 3.86
1326 4385 4.042062 TGTTGTCTGATCCAAATCTCCTGT 59.958 41.667 0.00 0.00 32.75 4.00
1327 4386 4.212143 TGTCTGATCCAAATCTCCTGTG 57.788 45.455 0.00 0.00 32.75 3.66
1328 4387 3.584406 TGTCTGATCCAAATCTCCTGTGT 59.416 43.478 0.00 0.00 32.75 3.72
1329 4388 4.777366 TGTCTGATCCAAATCTCCTGTGTA 59.223 41.667 0.00 0.00 32.75 2.90
1330 4389 5.112686 GTCTGATCCAAATCTCCTGTGTAC 58.887 45.833 0.00 0.00 32.75 2.90
1333 4821 6.667848 TCTGATCCAAATCTCCTGTGTACTAA 59.332 38.462 0.00 0.00 32.75 2.24
1346 4834 8.362464 TCCTGTGTACTAATGTACTTCATCTT 57.638 34.615 7.67 0.00 46.70 2.40
1383 4871 3.584406 TGTCTGATCCAAATCTCCTGTGT 59.416 43.478 0.00 0.00 32.75 3.72
1463 4951 1.881973 TGAAGAGCGCTGCTTGAAATT 59.118 42.857 18.48 0.00 39.88 1.82
1497 4985 4.759516 TGCTCACTTTAACCGATTTTCC 57.240 40.909 0.00 0.00 0.00 3.13
1570 5058 4.937620 TCATCACAGAGCAGGTAAAATGTC 59.062 41.667 0.00 0.00 0.00 3.06
1574 5062 5.412594 TCACAGAGCAGGTAAAATGTCAATC 59.587 40.000 0.00 0.00 0.00 2.67
1576 5064 6.595326 CACAGAGCAGGTAAAATGTCAATCTA 59.405 38.462 0.00 0.00 0.00 1.98
1794 5306 5.936956 GGAAAATGAGATGGGCTATGTAGAG 59.063 44.000 0.00 0.00 0.00 2.43
1942 5455 2.524306 TGTTGGGTTATTGCTGGGAAG 58.476 47.619 0.00 0.00 0.00 3.46
1970 5483 7.714377 AGGAATATAATGCTGTGAGAGAAACAG 59.286 37.037 0.00 0.00 46.39 3.16
1984 5497 4.114794 GAGAAACAGCACTTTTGTTGCAT 58.885 39.130 0.00 0.00 38.67 3.96
1987 5500 3.523606 ACAGCACTTTTGTTGCATCAA 57.476 38.095 6.10 6.10 37.46 2.57
1988 5501 4.062677 ACAGCACTTTTGTTGCATCAAT 57.937 36.364 10.87 0.00 37.46 2.57
1989 5502 3.805422 ACAGCACTTTTGTTGCATCAATG 59.195 39.130 10.87 7.89 37.46 2.82
1997 5510 8.377681 CACTTTTGTTGCATCAATGTAATGATC 58.622 33.333 10.87 0.00 37.96 2.92
2051 5564 8.281212 ACTAGTTGTCAGTTTTGTTTCTTCAT 57.719 30.769 0.00 0.00 0.00 2.57
2115 5631 2.945447 TATTGCACAAATGGCTCAGC 57.055 45.000 0.00 0.00 0.00 4.26
2120 5636 1.774639 CACAAATGGCTCAGCAACAC 58.225 50.000 0.00 0.00 0.00 3.32
2147 5665 8.842280 TGTAAAAGTACAAAACACCTAAGATGG 58.158 33.333 0.00 0.00 37.29 3.51
2299 5817 3.817647 GTGAAGAGAAGGTGTTCAGCAAT 59.182 43.478 4.86 0.00 39.04 3.56
2332 5850 2.440409 CTGCTGCAGGTTTGTCCTATT 58.560 47.619 21.71 0.00 46.24 1.73
2367 5887 8.829746 AGCATATAATCTCAGAATACCCATTGA 58.170 33.333 0.00 0.00 0.00 2.57
2400 5921 8.950208 ACTCCTGCTTGTAAAATATTAGAGTC 57.050 34.615 0.00 0.00 0.00 3.36
2533 6054 6.571605 ACTAGAATTAAGTTAGCCCTTCGTC 58.428 40.000 0.00 0.00 0.00 4.20
2537 6058 1.640917 AAGTTAGCCCTTCGTCTGGA 58.359 50.000 0.00 0.00 0.00 3.86
2546 6067 2.890945 CCCTTCGTCTGGATTTTGGTTT 59.109 45.455 0.00 0.00 0.00 3.27
2654 6175 4.034975 GGCATGTGATACTGAGCTCTTTTC 59.965 45.833 16.19 7.26 0.00 2.29
2658 6179 5.240891 TGTGATACTGAGCTCTTTTCCTTG 58.759 41.667 16.19 0.00 0.00 3.61
2677 6198 9.658799 TTTCCTTGTCATTTCATAACACAAAAA 57.341 25.926 0.00 0.00 0.00 1.94
2766 6335 4.474651 AGGATGATGTGGTTATGTTCCTGA 59.525 41.667 0.00 0.00 31.32 3.86
2909 6478 1.171308 CTGAAGCCAATGTCACCAGG 58.829 55.000 0.00 0.00 0.00 4.45
2925 6494 6.605194 TGTCACCAGGCAATATATTTGCTTTA 59.395 34.615 16.74 0.59 44.36 1.85
3232 6801 4.997395 TCTCATCCTGTTGTAAGTTTGCTC 59.003 41.667 0.00 0.00 0.00 4.26
3246 6815 5.079689 AGTTTGCTCTACTTCCTAAGCTC 57.920 43.478 0.00 0.00 35.76 4.09
3258 6827 6.431722 ACTTCCTAAGCTCTAGTTCTCATCT 58.568 40.000 0.00 0.00 0.00 2.90
3327 6896 8.995419 TTTAAAATTTTAAAGCGTCAAATGCC 57.005 26.923 25.25 0.00 37.61 4.40
3358 6927 5.897377 ACAATCAATAGGTTTACTGCACC 57.103 39.130 0.00 0.00 34.06 5.01
3381 6958 5.737290 CCGTTGATAACATTCGAATTGAACC 59.263 40.000 8.21 0.00 40.00 3.62
3439 7016 3.776417 GGTAATGTACCTGTGGGGACTTA 59.224 47.826 0.00 0.00 46.52 2.24
3569 7254 6.127619 GGTGGATTCGATTTCTTGGAAAAGAT 60.128 38.462 0.00 0.00 0.00 2.40
3687 7380 2.009042 GCTCGGCTGCTCTGTTTATGT 61.009 52.381 0.00 0.00 0.00 2.29
3791 7484 5.235850 TGGAAGATTTGCAGGTACTTACA 57.764 39.130 6.04 6.04 34.60 2.41
3819 7512 2.225382 TCGTACCTGAGTTCCATCCA 57.775 50.000 0.00 0.00 0.00 3.41
3852 7545 6.089150 GCTACGGTAGGAAAAATATAAGAGCG 59.911 42.308 16.43 0.00 0.00 5.03
3929 7622 6.290294 ACTCTGCCTTGATTATTTGCATTT 57.710 33.333 0.00 0.00 0.00 2.32
3936 7629 6.072008 GCCTTGATTATTTGCATTTGGGTTTT 60.072 34.615 0.00 0.00 0.00 2.43
3945 7638 4.892433 TGCATTTGGGTTTTATCACTTGG 58.108 39.130 0.00 0.00 0.00 3.61
3996 7689 9.191995 GAAAAGTCAATTATGGACGAATTTGTT 57.808 29.630 0.00 0.00 40.20 2.83
4088 7783 5.543507 TGCCAAACCAATGTGTTCTATTT 57.456 34.783 0.00 0.00 0.00 1.40
4192 7889 6.823689 GTGGACAATAAGATACCACACTTGAT 59.176 38.462 0.00 0.00 46.75 2.57
4208 7905 3.823304 ACTTGATTTCAGTCCAAGGAAGC 59.177 43.478 0.00 0.00 40.99 3.86
4371 8087 5.516996 CACAAAGCACTATAATCCAGCATG 58.483 41.667 0.00 0.00 0.00 4.06
4387 8103 6.101332 TCCAGCATGCATTTCATTTTAGAAC 58.899 36.000 21.98 0.00 31.79 3.01
4666 8385 1.153269 TGCAGGCAAGTCGTGAACA 60.153 52.632 0.00 0.00 32.56 3.18
4741 8471 9.836864 AAATGATTTCACTATGACTACATGCTA 57.163 29.630 0.00 0.00 37.87 3.49
4913 8656 2.163412 TGCAGGTTTTGTTGTGTCTGTC 59.837 45.455 0.00 0.00 0.00 3.51
4976 8719 0.955919 CACCTGGCGGGAAGACTTTC 60.956 60.000 21.81 0.00 38.76 2.62
5184 8931 7.827819 ATGCTCAAATGAATCACTTTTCATG 57.172 32.000 0.80 0.00 43.73 3.07
5193 8940 9.643693 AATGAATCACTTTTCATGTGTTATTCC 57.356 29.630 0.80 0.00 43.73 3.01
5453 9418 7.485418 TTTGTGAACGTATACATTCAACACT 57.515 32.000 15.39 0.00 36.62 3.55
5457 9422 6.365247 GTGAACGTATACATTCAACACTGACT 59.635 38.462 15.39 0.00 36.62 3.41
5658 9624 2.291209 TTCTCATGGAGGCAGCAAAA 57.709 45.000 0.00 0.00 0.00 2.44
5761 9727 9.125026 CATAATTACTAGTCCATGAAAAGCCTT 57.875 33.333 0.00 0.00 0.00 4.35
5835 9801 9.827198 TGGAAATATTTATCAGGAATATGCCTT 57.173 29.630 0.00 0.00 35.66 4.35
5837 9803 9.578439 GAAATATTTATCAGGAATATGCCTTGC 57.422 33.333 0.00 0.00 35.66 4.01
5839 9805 1.901591 ATCAGGAATATGCCTTGCGG 58.098 50.000 0.00 0.00 35.66 5.69
5840 9806 0.836606 TCAGGAATATGCCTTGCGGA 59.163 50.000 0.00 0.00 35.66 5.54
5841 9807 0.947244 CAGGAATATGCCTTGCGGAC 59.053 55.000 0.00 0.00 35.66 4.79
5842 9808 0.839946 AGGAATATGCCTTGCGGACT 59.160 50.000 0.00 0.00 33.46 3.85
5845 9850 3.073062 AGGAATATGCCTTGCGGACTTAT 59.927 43.478 0.00 0.00 33.46 1.73
5848 9853 2.418368 ATGCCTTGCGGACTTATGAA 57.582 45.000 0.00 0.00 0.00 2.57
5869 9874 2.930040 AGCTTATGCACATGACACGTAC 59.070 45.455 0.00 0.00 42.74 3.67
5899 9904 0.595095 CAGAAGGAAAGCACTGCCAC 59.405 55.000 0.00 0.00 0.00 5.01
5906 9911 2.954318 GGAAAGCACTGCCACATATGAT 59.046 45.455 10.38 0.00 0.00 2.45
5969 9974 7.125792 CCTTTCCAAGGTAGCTCTCTTTATA 57.874 40.000 0.00 0.00 43.95 0.98
6059 10064 5.524646 AGTTGGCAAATTTTGTGATGAACTG 59.475 36.000 0.00 0.00 0.00 3.16
6166 10171 2.517450 GCTCCTTGATTCGGCGTCG 61.517 63.158 1.15 1.15 37.82 5.12
6253 10258 9.928236 GCATCTAAGATTACTTTCAATGACTTC 57.072 33.333 0.00 0.00 37.53 3.01
6362 10367 1.496060 TGTTCAGAGGCATCCGGTAT 58.504 50.000 0.00 0.00 0.00 2.73
6406 10426 5.294306 GCATCGATCCTTCACAAAAGATACA 59.706 40.000 0.00 0.00 0.00 2.29
6413 10433 7.873719 TCCTTCACAAAAGATACAAACTCAA 57.126 32.000 0.00 0.00 0.00 3.02
6414 10434 8.463930 TCCTTCACAAAAGATACAAACTCAAT 57.536 30.769 0.00 0.00 0.00 2.57
6415 10435 9.567776 TCCTTCACAAAAGATACAAACTCAATA 57.432 29.630 0.00 0.00 0.00 1.90
6419 10439 9.739276 TCACAAAAGATACAAACTCAATATCCT 57.261 29.630 0.00 0.00 0.00 3.24
6567 10587 2.504175 CCAAAATTCTACTCCCTCCGGA 59.496 50.000 2.93 2.93 36.45 5.14
6601 10621 1.263356 TGGAACGGAGGGAGTAGTTG 58.737 55.000 0.00 0.00 0.00 3.16
6623 10643 7.880195 AGTTGTCTTTTAGTCATAGCATGAACT 59.120 33.333 0.00 0.00 41.69 3.01
6627 10647 8.887717 GTCTTTTAGTCATAGCATGAACTGAAT 58.112 33.333 0.00 0.00 41.69 2.57
6649 10669 9.034800 TGAATTTTAATCCTTATCCAGCAACTT 57.965 29.630 0.00 0.00 0.00 2.66
6650 10670 9.875691 GAATTTTAATCCTTATCCAGCAACTTT 57.124 29.630 0.00 0.00 0.00 2.66
6666 10691 1.308998 CTTTGCTGTCGTTCCCACTT 58.691 50.000 0.00 0.00 0.00 3.16
6722 10749 2.350522 AGCTGCACATTTAACTCTCCG 58.649 47.619 1.02 0.00 0.00 4.63
6724 10751 2.939103 GCTGCACATTTAACTCTCCGAT 59.061 45.455 0.00 0.00 0.00 4.18
6741 10768 9.367444 ACTCTCCGATAAAGTTTACACATTAAG 57.633 33.333 0.00 0.00 0.00 1.85
6742 10769 8.193250 TCTCCGATAAAGTTTACACATTAAGC 57.807 34.615 0.00 0.00 0.00 3.09
6743 10770 6.996106 TCCGATAAAGTTTACACATTAAGCG 58.004 36.000 0.00 0.00 0.00 4.68
6744 10771 6.591062 TCCGATAAAGTTTACACATTAAGCGT 59.409 34.615 0.00 0.00 0.00 5.07
6745 10772 6.681178 CCGATAAAGTTTACACATTAAGCGTG 59.319 38.462 0.00 6.32 40.32 5.34
6764 10792 4.378616 GCGTGCTGTAACACTTGTTTTATG 59.621 41.667 0.00 0.00 39.31 1.90
6777 10805 8.516234 ACACTTGTTTTATGTGTAACTGAACAA 58.484 29.630 0.00 0.00 43.48 2.83
6825 10856 2.482721 GGTTGGTTATGTTCACTGTCCG 59.517 50.000 0.00 0.00 0.00 4.79
6826 10857 3.135994 GTTGGTTATGTTCACTGTCCGT 58.864 45.455 0.00 0.00 0.00 4.69
6827 10858 3.034721 TGGTTATGTTCACTGTCCGTC 57.965 47.619 0.00 0.00 0.00 4.79
6841 10872 3.571571 TGTCCGTCAAATCAGTTCTACG 58.428 45.455 0.00 0.00 0.00 3.51
6940 11009 8.571461 ACATTCACTGACATCTAATCATGTTT 57.429 30.769 0.00 0.00 37.11 2.83
7129 11199 6.412362 ACTCCTACAATTAGGTGAGCATAG 57.588 41.667 6.76 0.00 45.01 2.23
7231 11305 7.440523 TGCTGTAAAAATTCTCTTTCCTCTC 57.559 36.000 0.00 0.00 0.00 3.20
7424 11498 2.481449 GGAGTTGTACCTGCTGGATACG 60.481 54.545 17.64 0.00 42.51 3.06
7426 11500 2.165845 AGTTGTACCTGCTGGATACGTC 59.834 50.000 17.64 10.91 42.51 4.34
7459 11533 3.933861 AGGTAGGCCCTAGTGAAATTG 57.066 47.619 0.00 0.00 43.87 2.32
7514 11590 3.187227 GTCTTGTGCAGTACCAAGTGATG 59.813 47.826 12.84 0.00 0.00 3.07
7707 11783 3.522553 AGCTAATGTAACTGAGAACGGC 58.477 45.455 0.00 0.00 0.00 5.68
7854 11930 1.640917 TTTGACTAAGCCCTCCGACT 58.359 50.000 0.00 0.00 0.00 4.18
7914 11990 5.211174 TCACATATTCTGGAGCTGATGAG 57.789 43.478 0.00 0.00 0.00 2.90
8037 12113 2.996621 GACAGTGTCAGTCAAGCCATAC 59.003 50.000 18.54 0.00 36.06 2.39
8058 12134 9.650539 CCATACAGATATGAGGTTATTCTTCTG 57.349 37.037 0.00 0.00 40.75 3.02
8079 12155 3.181435 TGACCATCCACATCCTTTGTTCA 60.181 43.478 0.00 0.00 36.00 3.18
8094 12170 5.221702 CCTTTGTTCATTCCACCATCCTTTT 60.222 40.000 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.358247 GCGAAACGGAGGCCAGAA 60.358 61.111 5.01 0.00 0.00 3.02
19 20 1.888215 ACACATCACTGACTGCCAAG 58.112 50.000 0.00 0.00 0.00 3.61
101 102 3.944055 AGTAGTCAAGTGGTACAGCAG 57.056 47.619 0.00 0.00 41.80 4.24
234 239 8.144478 TGCTACTCATGAGACCTTGATTAATAC 58.856 37.037 29.27 2.34 0.00 1.89
235 240 8.250143 TGCTACTCATGAGACCTTGATTAATA 57.750 34.615 29.27 5.50 0.00 0.98
236 241 7.129457 TGCTACTCATGAGACCTTGATTAAT 57.871 36.000 29.27 4.55 0.00 1.40
237 242 6.407412 CCTGCTACTCATGAGACCTTGATTAA 60.407 42.308 29.27 2.75 0.00 1.40
251 256 2.836981 AGCTCACTTTCCTGCTACTCAT 59.163 45.455 0.00 0.00 33.64 2.90
252 257 2.232452 GAGCTCACTTTCCTGCTACTCA 59.768 50.000 9.40 0.00 35.76 3.41
318 352 6.502652 TGACACCAACTACACAAATGAAATG 58.497 36.000 0.00 0.00 0.00 2.32
319 353 6.707440 TGACACCAACTACACAAATGAAAT 57.293 33.333 0.00 0.00 0.00 2.17
323 357 5.163663 ACACTTGACACCAACTACACAAATG 60.164 40.000 0.00 0.00 0.00 2.32
325 359 4.328536 ACACTTGACACCAACTACACAAA 58.671 39.130 0.00 0.00 0.00 2.83
327 361 3.620427 ACACTTGACACCAACTACACA 57.380 42.857 0.00 0.00 0.00 3.72
328 362 4.871557 TGTTACACTTGACACCAACTACAC 59.128 41.667 0.00 0.00 0.00 2.90
334 368 5.708230 ACTTTTCTGTTACACTTGACACCAA 59.292 36.000 0.00 0.00 0.00 3.67
335 369 5.123186 CACTTTTCTGTTACACTTGACACCA 59.877 40.000 0.00 0.00 0.00 4.17
336 370 5.448632 CCACTTTTCTGTTACACTTGACACC 60.449 44.000 0.00 0.00 0.00 4.16
344 380 5.106673 GCTGATACCCACTTTTCTGTTACAC 60.107 44.000 0.00 0.00 0.00 2.90
358 394 1.450134 CGCTTGCAGCTGATACCCA 60.450 57.895 20.43 1.69 39.60 4.51
362 398 1.476488 TCACTACGCTTGCAGCTGATA 59.524 47.619 20.43 1.74 39.60 2.15
380 416 4.780815 AGCCGTATCAAATTCCATCTTCA 58.219 39.130 0.00 0.00 0.00 3.02
420 456 7.108841 TCACTTTGACTTGACTGTACTAGTT 57.891 36.000 0.00 0.00 40.53 2.24
421 457 6.710597 TCACTTTGACTTGACTGTACTAGT 57.289 37.500 0.00 0.00 44.02 2.57
422 458 6.642950 CCTTCACTTTGACTTGACTGTACTAG 59.357 42.308 0.00 0.00 0.00 2.57
424 460 5.128827 TCCTTCACTTTGACTTGACTGTACT 59.871 40.000 0.00 0.00 0.00 2.73
425 461 5.357257 TCCTTCACTTTGACTTGACTGTAC 58.643 41.667 0.00 0.00 0.00 2.90
427 463 4.487714 TCCTTCACTTTGACTTGACTGT 57.512 40.909 0.00 0.00 0.00 3.55
428 464 5.278169 CCATTCCTTCACTTTGACTTGACTG 60.278 44.000 0.00 0.00 0.00 3.51
429 465 4.823989 CCATTCCTTCACTTTGACTTGACT 59.176 41.667 0.00 0.00 0.00 3.41
430 466 4.821805 TCCATTCCTTCACTTTGACTTGAC 59.178 41.667 0.00 0.00 0.00 3.18
432 468 5.336213 CCATCCATTCCTTCACTTTGACTTG 60.336 44.000 0.00 0.00 0.00 3.16
442 496 1.225373 CCCTCCCATCCATTCCTTCA 58.775 55.000 0.00 0.00 0.00 3.02
456 510 3.495100 CCTGCATGTATTGTACTCCCTCC 60.495 52.174 0.00 0.00 0.00 4.30
457 511 3.495100 CCCTGCATGTATTGTACTCCCTC 60.495 52.174 0.00 0.00 0.00 4.30
458 512 2.439507 CCCTGCATGTATTGTACTCCCT 59.560 50.000 0.00 0.00 0.00 4.20
459 513 2.438021 TCCCTGCATGTATTGTACTCCC 59.562 50.000 0.00 0.00 0.00 4.30
460 514 3.838244 TCCCTGCATGTATTGTACTCC 57.162 47.619 0.00 0.00 0.00 3.85
461 515 4.811557 GTCTTCCCTGCATGTATTGTACTC 59.188 45.833 0.00 0.00 0.00 2.59
463 517 3.555956 CGTCTTCCCTGCATGTATTGTAC 59.444 47.826 0.00 0.00 0.00 2.90
466 520 1.331756 GCGTCTTCCCTGCATGTATTG 59.668 52.381 0.00 0.00 0.00 1.90
468 522 0.530650 CGCGTCTTCCCTGCATGTAT 60.531 55.000 0.00 0.00 0.00 2.29
484 538 2.584418 CTCTCTGTCATGGCCGCG 60.584 66.667 0.00 0.00 0.00 6.46
487 541 1.818785 GCTGCTCTCTGTCATGGCC 60.819 63.158 0.00 0.00 0.00 5.36
492 546 2.346541 CGAGGGCTGCTCTCTGTCA 61.347 63.158 25.73 0.00 0.00 3.58
495 549 3.719883 CTGCGAGGGCTGCTCTCTG 62.720 68.421 25.73 19.47 40.82 3.35
503 557 4.385405 GTCACTGCTGCGAGGGCT 62.385 66.667 0.00 0.00 40.82 5.19
509 615 2.661566 CCGTTCTGTCACTGCTGCG 61.662 63.158 0.00 0.00 0.00 5.18
535 641 2.127232 ACAACAACCCAGCACCAGC 61.127 57.895 0.00 0.00 42.56 4.85
538 644 1.675720 AAGCACAACAACCCAGCACC 61.676 55.000 0.00 0.00 0.00 5.01
539 645 0.175531 AAAGCACAACAACCCAGCAC 59.824 50.000 0.00 0.00 0.00 4.40
540 646 0.459489 GAAAGCACAACAACCCAGCA 59.541 50.000 0.00 0.00 0.00 4.41
541 647 0.746659 AGAAAGCACAACAACCCAGC 59.253 50.000 0.00 0.00 0.00 4.85
543 649 2.297701 GAGAGAAAGCACAACAACCCA 58.702 47.619 0.00 0.00 0.00 4.51
544 650 2.297701 TGAGAGAAAGCACAACAACCC 58.702 47.619 0.00 0.00 0.00 4.11
545 651 3.565482 TCATGAGAGAAAGCACAACAACC 59.435 43.478 0.00 0.00 0.00 3.77
546 652 4.818534 TCATGAGAGAAAGCACAACAAC 57.181 40.909 0.00 0.00 0.00 3.32
548 654 3.754850 CCATCATGAGAGAAAGCACAACA 59.245 43.478 0.09 0.00 0.00 3.33
549 655 3.427233 GCCATCATGAGAGAAAGCACAAC 60.427 47.826 0.09 0.00 0.00 3.32
551 657 2.026542 AGCCATCATGAGAGAAAGCACA 60.027 45.455 0.09 0.00 0.00 4.57
552 658 2.641305 AGCCATCATGAGAGAAAGCAC 58.359 47.619 0.09 0.00 0.00 4.40
554 660 3.065095 GTGAAGCCATCATGAGAGAAAGC 59.935 47.826 0.09 0.00 40.97 3.51
557 663 2.842496 AGGTGAAGCCATCATGAGAGAA 59.158 45.455 0.09 0.00 40.97 2.87
558 664 2.475155 AGGTGAAGCCATCATGAGAGA 58.525 47.619 0.09 0.00 40.97 3.10
561 667 8.316946 TCTAATATTAGGTGAAGCCATCATGAG 58.683 37.037 19.98 0.00 40.97 2.90
562 668 8.206126 TCTAATATTAGGTGAAGCCATCATGA 57.794 34.615 19.98 0.00 40.97 3.07
563 669 8.316946 TCTCTAATATTAGGTGAAGCCATCATG 58.683 37.037 19.98 0.00 40.97 3.07
564 670 8.441311 TCTCTAATATTAGGTGAAGCCATCAT 57.559 34.615 19.98 0.00 40.97 2.45
565 671 7.730332 TCTCTCTAATATTAGGTGAAGCCATCA 59.270 37.037 19.98 0.00 40.61 3.07
566 672 8.128322 TCTCTCTAATATTAGGTGAAGCCATC 57.872 38.462 19.98 0.00 40.61 3.51
567 673 8.497910 TTCTCTCTAATATTAGGTGAAGCCAT 57.502 34.615 19.98 0.00 40.61 4.40
569 675 7.757624 CGATTCTCTCTAATATTAGGTGAAGCC 59.242 40.741 19.98 15.36 37.58 4.35
570 676 8.301002 ACGATTCTCTCTAATATTAGGTGAAGC 58.699 37.037 19.98 20.05 0.00 3.86
579 1259 8.132362 GCGGATATGACGATTCTCTCTAATATT 58.868 37.037 0.00 0.00 0.00 1.28
583 1263 4.760204 TGCGGATATGACGATTCTCTCTAA 59.240 41.667 0.00 0.00 0.00 2.10
596 1276 7.022055 ACGATTGTTTAAAATGCGGATATGA 57.978 32.000 0.00 0.00 0.00 2.15
598 1278 8.399425 TGTAACGATTGTTTAAAATGCGGATAT 58.601 29.630 3.03 0.00 39.54 1.63
638 2751 2.057137 AGGCAGCAACAAAAGACTGA 57.943 45.000 0.00 0.00 31.67 3.41
643 2756 4.574599 AGAGTAAAGGCAGCAACAAAAG 57.425 40.909 0.00 0.00 0.00 2.27
647 2760 2.884639 GGAAAGAGTAAAGGCAGCAACA 59.115 45.455 0.00 0.00 0.00 3.33
648 2761 3.149981 AGGAAAGAGTAAAGGCAGCAAC 58.850 45.455 0.00 0.00 0.00 4.17
649 2762 3.508845 AGGAAAGAGTAAAGGCAGCAA 57.491 42.857 0.00 0.00 0.00 3.91
650 2763 4.286032 TCTTAGGAAAGAGTAAAGGCAGCA 59.714 41.667 0.00 0.00 36.80 4.41
651 2764 4.632251 GTCTTAGGAAAGAGTAAAGGCAGC 59.368 45.833 0.00 0.00 42.40 5.25
652 2765 5.794894 TGTCTTAGGAAAGAGTAAAGGCAG 58.205 41.667 0.00 0.00 42.40 4.85
654 2767 6.038997 TCTGTCTTAGGAAAGAGTAAAGGC 57.961 41.667 0.00 0.00 42.40 4.35
659 2772 9.716556 AGGATATTTCTGTCTTAGGAAAGAGTA 57.283 33.333 0.00 0.00 42.40 2.59
660 2773 8.616799 AGGATATTTCTGTCTTAGGAAAGAGT 57.383 34.615 0.00 0.00 42.40 3.24
661 2774 9.974980 GTAGGATATTTCTGTCTTAGGAAAGAG 57.025 37.037 0.00 0.00 42.40 2.85
662 2775 9.716556 AGTAGGATATTTCTGTCTTAGGAAAGA 57.283 33.333 0.00 0.00 39.47 2.52
663 2776 9.757227 CAGTAGGATATTTCTGTCTTAGGAAAG 57.243 37.037 0.00 0.00 35.37 2.62
664 2777 9.268282 ACAGTAGGATATTTCTGTCTTAGGAAA 57.732 33.333 0.00 0.00 36.59 3.13
665 2778 8.840200 ACAGTAGGATATTTCTGTCTTAGGAA 57.160 34.615 0.00 0.00 36.59 3.36
666 2779 8.696374 CAACAGTAGGATATTTCTGTCTTAGGA 58.304 37.037 0.00 0.00 39.72 2.94
667 2780 7.928706 CCAACAGTAGGATATTTCTGTCTTAGG 59.071 40.741 0.00 0.00 39.72 2.69
668 2781 8.478877 ACCAACAGTAGGATATTTCTGTCTTAG 58.521 37.037 0.00 0.00 39.72 2.18
669 2782 8.375493 ACCAACAGTAGGATATTTCTGTCTTA 57.625 34.615 0.00 0.00 39.72 2.10
670 2783 7.259088 ACCAACAGTAGGATATTTCTGTCTT 57.741 36.000 0.00 0.00 39.72 3.01
671 2784 6.875972 ACCAACAGTAGGATATTTCTGTCT 57.124 37.500 0.00 0.00 39.72 3.41
672 2785 7.222224 CGTTACCAACAGTAGGATATTTCTGTC 59.778 40.741 0.00 0.00 39.72 3.51
673 2786 7.039882 CGTTACCAACAGTAGGATATTTCTGT 58.960 38.462 0.00 0.00 41.93 3.41
674 2787 7.262772 TCGTTACCAACAGTAGGATATTTCTG 58.737 38.462 0.00 0.00 30.92 3.02
675 2788 7.123847 ACTCGTTACCAACAGTAGGATATTTCT 59.876 37.037 0.00 0.00 30.92 2.52
677 2790 7.179076 ACTCGTTACCAACAGTAGGATATTT 57.821 36.000 0.00 0.00 30.92 1.40
680 2793 7.886629 AATACTCGTTACCAACAGTAGGATA 57.113 36.000 0.00 0.00 32.57 2.59
681 2794 6.786967 AATACTCGTTACCAACAGTAGGAT 57.213 37.500 0.00 0.00 32.57 3.24
682 2795 7.886629 ATAATACTCGTTACCAACAGTAGGA 57.113 36.000 0.00 0.00 32.57 2.94
683 2796 8.937634 AAATAATACTCGTTACCAACAGTAGG 57.062 34.615 0.00 0.00 32.57 3.18
685 2798 8.752187 AGGAAATAATACTCGTTACCAACAGTA 58.248 33.333 0.00 0.00 33.12 2.74
686 2799 7.618137 AGGAAATAATACTCGTTACCAACAGT 58.382 34.615 0.00 0.00 0.00 3.55
687 2800 7.980099 AGAGGAAATAATACTCGTTACCAACAG 59.020 37.037 0.00 0.00 36.40 3.16
688 2801 7.844009 AGAGGAAATAATACTCGTTACCAACA 58.156 34.615 0.00 0.00 36.40 3.33
689 2802 8.713737 AAGAGGAAATAATACTCGTTACCAAC 57.286 34.615 0.00 0.00 36.40 3.77
692 2805 8.815189 GTCAAAGAGGAAATAATACTCGTTACC 58.185 37.037 0.00 0.00 36.40 2.85
693 2806 8.529911 CGTCAAAGAGGAAATAATACTCGTTAC 58.470 37.037 0.00 0.00 36.40 2.50
694 2807 7.703621 CCGTCAAAGAGGAAATAATACTCGTTA 59.296 37.037 0.00 0.00 36.40 3.18
695 2808 6.534079 CCGTCAAAGAGGAAATAATACTCGTT 59.466 38.462 0.00 0.00 36.40 3.85
696 2809 6.040878 CCGTCAAAGAGGAAATAATACTCGT 58.959 40.000 0.00 0.00 36.40 4.18
698 2811 8.664211 AATCCGTCAAAGAGGAAATAATACTC 57.336 34.615 0.00 0.00 40.32 2.59
700 2813 9.717892 GAAAATCCGTCAAAGAGGAAATAATAC 57.282 33.333 0.00 0.00 40.32 1.89
701 2814 9.456147 TGAAAATCCGTCAAAGAGGAAATAATA 57.544 29.630 0.00 0.00 40.32 0.98
702 2815 8.348285 TGAAAATCCGTCAAAGAGGAAATAAT 57.652 30.769 0.00 0.00 40.32 1.28
703 2816 7.094377 CCTGAAAATCCGTCAAAGAGGAAATAA 60.094 37.037 0.00 0.00 40.32 1.40
704 2817 6.374333 CCTGAAAATCCGTCAAAGAGGAAATA 59.626 38.462 0.00 0.00 40.32 1.40
705 2818 5.183904 CCTGAAAATCCGTCAAAGAGGAAAT 59.816 40.000 0.00 0.00 40.32 2.17
706 2819 4.518970 CCTGAAAATCCGTCAAAGAGGAAA 59.481 41.667 0.00 0.00 40.32 3.13
707 2820 4.072131 CCTGAAAATCCGTCAAAGAGGAA 58.928 43.478 0.00 0.00 40.32 3.36
708 2821 3.072476 ACCTGAAAATCCGTCAAAGAGGA 59.928 43.478 0.00 0.00 41.30 3.71
709 2822 3.412386 ACCTGAAAATCCGTCAAAGAGG 58.588 45.455 0.00 0.00 0.00 3.69
725 3771 1.968493 AGTCCAAACGAGCTTACCTGA 59.032 47.619 0.00 0.00 0.00 3.86
731 3777 1.949465 AAACGAGTCCAAACGAGCTT 58.051 45.000 0.00 0.00 0.00 3.74
797 3844 6.020440 TCGTACAAATTCTATTTAGCGGTTCG 60.020 38.462 0.00 0.00 0.00 3.95
800 3847 5.751990 CCTCGTACAAATTCTATTTAGCGGT 59.248 40.000 0.00 0.00 0.00 5.68
801 3848 5.333111 GCCTCGTACAAATTCTATTTAGCGG 60.333 44.000 0.00 0.00 0.00 5.52
802 3849 5.333111 GGCCTCGTACAAATTCTATTTAGCG 60.333 44.000 0.00 0.00 0.00 4.26
803 3850 5.758784 AGGCCTCGTACAAATTCTATTTAGC 59.241 40.000 0.00 0.00 0.00 3.09
804 3851 6.984474 TGAGGCCTCGTACAAATTCTATTTAG 59.016 38.462 27.43 0.00 0.00 1.85
805 3852 6.880484 TGAGGCCTCGTACAAATTCTATTTA 58.120 36.000 27.43 0.51 0.00 1.40
806 3853 5.741011 TGAGGCCTCGTACAAATTCTATTT 58.259 37.500 27.43 0.00 0.00 1.40
807 3854 5.353394 TGAGGCCTCGTACAAATTCTATT 57.647 39.130 27.43 0.00 0.00 1.73
808 3855 5.353394 TTGAGGCCTCGTACAAATTCTAT 57.647 39.130 27.43 0.00 0.00 1.98
809 3856 4.811969 TTGAGGCCTCGTACAAATTCTA 57.188 40.909 27.43 2.35 0.00 2.10
810 3857 3.695830 TTGAGGCCTCGTACAAATTCT 57.304 42.857 27.43 0.00 0.00 2.40
811 3858 4.965119 AATTGAGGCCTCGTACAAATTC 57.035 40.909 27.43 0.96 0.00 2.17
812 3859 4.522789 ACAAATTGAGGCCTCGTACAAATT 59.477 37.500 27.43 21.99 0.00 1.82
813 3860 4.079253 ACAAATTGAGGCCTCGTACAAAT 58.921 39.130 27.43 17.61 0.00 2.32
814 3861 3.482436 ACAAATTGAGGCCTCGTACAAA 58.518 40.909 27.43 16.07 0.00 2.83
815 3862 3.134574 ACAAATTGAGGCCTCGTACAA 57.865 42.857 27.43 17.07 0.00 2.41
816 3863 2.851263 ACAAATTGAGGCCTCGTACA 57.149 45.000 27.43 11.96 0.00 2.90
817 3864 4.873827 TCAATACAAATTGAGGCCTCGTAC 59.126 41.667 27.43 5.13 45.17 3.67
818 3865 5.092554 TCAATACAAATTGAGGCCTCGTA 57.907 39.130 27.43 21.43 45.17 3.43
819 3866 3.950397 TCAATACAAATTGAGGCCTCGT 58.050 40.909 27.43 20.01 45.17 4.18
828 3875 7.011016 TGACGCCTATACACTCAATACAAATTG 59.989 37.037 0.00 0.00 43.32 2.32
843 3890 4.634184 TTGTTCTCTCTGACGCCTATAC 57.366 45.455 0.00 0.00 0.00 1.47
844 3891 4.705507 ACTTTGTTCTCTCTGACGCCTATA 59.294 41.667 0.00 0.00 0.00 1.31
845 3892 3.511934 ACTTTGTTCTCTCTGACGCCTAT 59.488 43.478 0.00 0.00 0.00 2.57
846 3893 2.891580 ACTTTGTTCTCTCTGACGCCTA 59.108 45.455 0.00 0.00 0.00 3.93
849 3896 3.123804 TGAACTTTGTTCTCTCTGACGC 58.876 45.455 11.06 0.00 0.00 5.19
868 3915 1.371183 CTCGTGGAAGCCCTGTTGA 59.629 57.895 0.00 0.00 0.00 3.18
892 3939 5.103515 GGATAATATGAATATGGGCCTGGGT 60.104 44.000 4.53 0.00 0.00 4.51
904 3951 5.411781 GCGACGGAAGAGGATAATATGAAT 58.588 41.667 0.00 0.00 0.00 2.57
952 4000 2.122954 GGAGTGGAGGGACAGGGT 59.877 66.667 0.00 0.00 0.00 4.34
957 4005 2.363147 AGAGCGGAGTGGAGGGAC 60.363 66.667 0.00 0.00 0.00 4.46
1008 4056 4.475135 GTGAGGGGGAGCGCCTTC 62.475 72.222 2.29 8.48 46.94 3.46
1113 4161 0.401738 ATACCATGGAGGAATGCGGG 59.598 55.000 21.47 0.00 41.22 6.13
1130 4178 2.202878 GCGGAACAGCCTGCGATA 60.203 61.111 0.00 0.00 30.81 2.92
1177 4230 1.795170 CTCCCTGCCCAAAACACACG 61.795 60.000 0.00 0.00 0.00 4.49
1190 4247 3.095163 AGGCCATGCTCCTCCCTG 61.095 66.667 5.01 0.00 0.00 4.45
1257 4316 2.566952 AATTAAGCTGCAACATCGGC 57.433 45.000 1.02 0.00 38.60 5.54
1259 4318 3.241426 CGCAAAATTAAGCTGCAACATCG 60.241 43.478 1.02 0.00 35.78 3.84
1268 4327 4.272261 CCAAACAAACCGCAAAATTAAGCT 59.728 37.500 1.27 0.00 0.00 3.74
1281 4340 2.666344 GCGATAACCGACCAAACAAACC 60.666 50.000 0.00 0.00 41.76 3.27
1290 4349 0.997196 GACAACAGCGATAACCGACC 59.003 55.000 0.00 0.00 41.76 4.79
1294 4353 2.866762 GGATCAGACAACAGCGATAACC 59.133 50.000 0.00 0.00 0.00 2.85
1299 4358 2.542020 TTTGGATCAGACAACAGCGA 57.458 45.000 0.00 0.00 0.00 4.93
1300 4359 3.005554 AGATTTGGATCAGACAACAGCG 58.994 45.455 0.00 0.00 34.60 5.18
1301 4360 3.376546 GGAGATTTGGATCAGACAACAGC 59.623 47.826 0.00 0.00 34.60 4.40
1303 4362 4.042062 ACAGGAGATTTGGATCAGACAACA 59.958 41.667 0.00 0.00 34.60 3.33
1304 4363 4.394300 CACAGGAGATTTGGATCAGACAAC 59.606 45.833 0.00 0.00 34.60 3.32
1305 4364 4.042062 ACACAGGAGATTTGGATCAGACAA 59.958 41.667 0.00 0.00 34.60 3.18
1308 4367 5.026121 AGTACACAGGAGATTTGGATCAGA 58.974 41.667 0.00 0.00 34.60 3.27
1309 4368 5.350504 AGTACACAGGAGATTTGGATCAG 57.649 43.478 0.00 0.00 34.60 2.90
1310 4369 6.867519 TTAGTACACAGGAGATTTGGATCA 57.132 37.500 0.00 0.00 34.60 2.92
1311 4370 7.275920 ACATTAGTACACAGGAGATTTGGATC 58.724 38.462 0.00 0.00 0.00 3.36
1312 4371 7.200434 ACATTAGTACACAGGAGATTTGGAT 57.800 36.000 0.00 0.00 0.00 3.41
1346 4834 8.806429 TGGATCAGACAATCAGCTTAAAATAA 57.194 30.769 0.00 0.00 0.00 1.40
1350 4838 7.613022 AGATTTGGATCAGACAATCAGCTTAAA 59.387 33.333 0.00 0.00 34.60 1.52
1497 4985 0.511221 CTTGTCCCTGCGTAAACACG 59.489 55.000 0.00 0.00 0.00 4.49
1588 5076 9.956720 CAAGTAAGGGAAATATGATTAGCAAAG 57.043 33.333 0.00 0.00 0.00 2.77
1605 5094 6.016192 TCGCTAGAGATTCATACAAGTAAGGG 60.016 42.308 0.00 0.00 0.00 3.95
1662 5166 7.148755 GCTCCAACAACACAAACAATATGAATC 60.149 37.037 0.00 0.00 0.00 2.52
1663 5167 6.646240 GCTCCAACAACACAAACAATATGAAT 59.354 34.615 0.00 0.00 0.00 2.57
1664 5168 5.982516 GCTCCAACAACACAAACAATATGAA 59.017 36.000 0.00 0.00 0.00 2.57
1670 5174 2.560542 ACTGCTCCAACAACACAAACAA 59.439 40.909 0.00 0.00 0.00 2.83
1794 5306 2.821969 TGTACTGAACCCTAACGTCCTC 59.178 50.000 0.00 0.00 0.00 3.71
1872 5384 9.897744 TGAAATTCATAGACAGAACAAACATTC 57.102 29.630 0.00 0.00 0.00 2.67
1942 5455 8.983724 GTTTCTCTCACAGCATTATATTCCTAC 58.016 37.037 0.00 0.00 0.00 3.18
1970 5483 5.903764 TTACATTGATGCAACAAAAGTGC 57.096 34.783 20.75 0.00 42.55 4.40
1972 5485 8.308931 AGATCATTACATTGATGCAACAAAAGT 58.691 29.630 13.75 16.17 36.48 2.66
2009 5522 9.119329 GACAACTAGTTAGCTATATGTTCATCG 57.881 37.037 8.04 0.00 30.80 3.84
2063 5577 7.998964 TCATGACACTCTATATCACAGGTAGAA 59.001 37.037 0.00 0.00 0.00 2.10
2065 5579 7.751768 TCATGACACTCTATATCACAGGTAG 57.248 40.000 0.00 0.00 0.00 3.18
2077 5591 7.225341 GTGCAATATGTTCATCATGACACTCTA 59.775 37.037 0.00 0.00 37.91 2.43
2080 5594 5.648960 TGTGCAATATGTTCATCATGACACT 59.351 36.000 0.00 0.00 37.91 3.55
2115 5631 7.309920 AGGTGTTTTGTACTTTTACAGTGTTG 58.690 34.615 0.00 0.00 39.44 3.33
2120 5636 9.878599 CATCTTAGGTGTTTTGTACTTTTACAG 57.121 33.333 0.00 0.00 39.44 2.74
2126 5642 5.631119 AGCCATCTTAGGTGTTTTGTACTT 58.369 37.500 0.00 0.00 0.00 2.24
2131 5647 4.520492 AGACAAGCCATCTTAGGTGTTTTG 59.480 41.667 5.16 5.16 0.00 2.44
2512 6033 5.420409 CAGACGAAGGGCTAACTTAATTCT 58.580 41.667 0.00 0.00 0.00 2.40
2533 6054 6.345096 ACATTCTGGTAAACCAAAATCCAG 57.655 37.500 2.97 0.00 46.97 3.86
2537 6058 8.998377 GCATTTAACATTCTGGTAAACCAAAAT 58.002 29.630 2.97 0.00 41.70 1.82
2546 6067 3.348119 TGCCGCATTTAACATTCTGGTA 58.652 40.909 0.00 0.00 0.00 3.25
2623 6144 4.343231 TCAGTATCACATGCCCACATTTT 58.657 39.130 0.00 0.00 32.87 1.82
2925 6494 8.650490 ACACATTATCAGGTTCCTTTTGAAAAT 58.350 29.630 0.00 0.00 33.94 1.82
3232 6801 7.719633 AGATGAGAACTAGAGCTTAGGAAGTAG 59.280 40.741 0.00 0.00 0.00 2.57
3246 6815 8.012241 GCAAACTTACAACAAGATGAGAACTAG 58.988 37.037 0.00 0.00 0.00 2.57
3258 6827 7.399245 AGGAAGTAAAGCAAACTTACAACAA 57.601 32.000 9.82 0.00 39.80 2.83
3327 6896 3.966154 ACCTATTGATTGTACGAGCGAG 58.034 45.455 0.00 0.00 0.00 5.03
3331 6900 6.533723 TGCAGTAAACCTATTGATTGTACGAG 59.466 38.462 0.00 0.00 0.00 4.18
3358 6927 5.737290 GGGTTCAATTCGAATGTTATCAACG 59.263 40.000 12.25 0.00 35.63 4.10
3381 6958 3.448301 ACATTGGTTGATAACAGGCATGG 59.552 43.478 2.31 0.00 0.00 3.66
3439 7016 4.574828 ACGTCAGAAACAGCAAGTACATTT 59.425 37.500 0.00 0.00 0.00 2.32
3520 7205 0.607217 CACCATCCACTGCAGAGCAA 60.607 55.000 23.35 3.66 38.41 3.91
3569 7254 8.352137 TCCAATTCATCAATTTTAGAGCTTCA 57.648 30.769 0.00 0.00 28.97 3.02
3660 7353 1.079127 GAGCAGCCGAGCAGGTAAA 60.079 57.895 0.00 0.00 43.70 2.01
3687 7380 5.614308 AGATCAGTCAATCAGAAACACACA 58.386 37.500 0.00 0.00 0.00 3.72
3791 7484 6.942976 TGGAACTCAGGTACGAAGAATTAAT 58.057 36.000 0.00 0.00 0.00 1.40
3801 7494 3.543680 ATTGGATGGAACTCAGGTACG 57.456 47.619 0.00 0.00 0.00 3.67
3819 7512 7.891498 ATTTTTCCTACCGTAGCCATAAATT 57.109 32.000 0.00 0.00 0.00 1.82
3831 7524 6.401153 GCATCGCTCTTATATTTTTCCTACCG 60.401 42.308 0.00 0.00 0.00 4.02
3929 7622 6.800072 AAGAAAACCAAGTGATAAAACCCA 57.200 33.333 0.00 0.00 0.00 4.51
3936 7629 7.558444 ACCTACACAAAAGAAAACCAAGTGATA 59.442 33.333 0.00 0.00 0.00 2.15
3945 7638 8.617809 TCATAGTGAACCTACACAAAAGAAAAC 58.382 33.333 0.00 0.00 42.45 2.43
3996 7689 1.815003 CATGCCCTCACGAATGCGA 60.815 57.895 0.00 0.00 41.64 5.10
4192 7889 1.691976 TCTCGCTTCCTTGGACTGAAA 59.308 47.619 0.00 0.00 0.00 2.69
4713 8443 8.615211 GCATGTAGTCATAGTGAAATCATTTGA 58.385 33.333 0.00 0.00 32.47 2.69
4714 8444 8.618677 AGCATGTAGTCATAGTGAAATCATTTG 58.381 33.333 0.00 0.00 32.47 2.32
4715 8445 8.743085 AGCATGTAGTCATAGTGAAATCATTT 57.257 30.769 0.00 0.00 32.47 2.32
4716 8446 9.836864 TTAGCATGTAGTCATAGTGAAATCATT 57.163 29.630 0.00 0.00 32.47 2.57
4718 8448 9.264719 CATTAGCATGTAGTCATAGTGAAATCA 57.735 33.333 0.00 0.00 32.47 2.57
4719 8449 9.265901 ACATTAGCATGTAGTCATAGTGAAATC 57.734 33.333 0.00 0.00 42.24 2.17
4976 8719 2.191513 CAGCCGGGATGCCATGAAG 61.192 63.158 2.18 0.00 0.00 3.02
5184 8931 1.740025 GCAGGCTGTCAGGAATAACAC 59.260 52.381 17.16 0.00 0.00 3.32
5193 8940 4.463879 CCCCGAGCAGGCTGTCAG 62.464 72.222 17.16 7.27 39.21 3.51
5360 9324 6.293845 GGCTAACCTTTCAATAGCATCAGATG 60.294 42.308 5.98 5.98 42.96 2.90
5361 9325 5.767168 GGCTAACCTTTCAATAGCATCAGAT 59.233 40.000 6.38 0.00 42.96 2.90
5362 9326 5.126067 GGCTAACCTTTCAATAGCATCAGA 58.874 41.667 6.38 0.00 42.96 3.27
5363 9327 4.024556 CGGCTAACCTTTCAATAGCATCAG 60.025 45.833 6.38 0.00 42.96 2.90
5364 9328 3.876914 CGGCTAACCTTTCAATAGCATCA 59.123 43.478 6.38 0.00 42.96 3.07
5365 9329 3.251004 CCGGCTAACCTTTCAATAGCATC 59.749 47.826 6.38 0.00 42.96 3.91
5366 9330 3.214328 CCGGCTAACCTTTCAATAGCAT 58.786 45.455 6.38 0.00 42.96 3.79
5367 9331 2.026636 ACCGGCTAACCTTTCAATAGCA 60.027 45.455 0.00 0.00 42.96 3.49
5368 9332 2.640184 ACCGGCTAACCTTTCAATAGC 58.360 47.619 0.00 0.00 40.98 2.97
5369 9333 8.441312 TTTTATACCGGCTAACCTTTCAATAG 57.559 34.615 0.00 0.00 0.00 1.73
5370 9334 8.804912 TTTTTATACCGGCTAACCTTTCAATA 57.195 30.769 0.00 0.00 0.00 1.90
5371 9335 7.706100 TTTTTATACCGGCTAACCTTTCAAT 57.294 32.000 0.00 0.00 0.00 2.57
5372 9336 7.706100 ATTTTTATACCGGCTAACCTTTCAA 57.294 32.000 0.00 0.00 0.00 2.69
5373 9337 7.612633 AGAATTTTTATACCGGCTAACCTTTCA 59.387 33.333 0.00 0.00 0.00 2.69
5374 9338 7.993101 AGAATTTTTATACCGGCTAACCTTTC 58.007 34.615 0.00 3.37 0.00 2.62
5375 9339 7.949690 AGAATTTTTATACCGGCTAACCTTT 57.050 32.000 0.00 0.00 0.00 3.11
5376 9340 7.612633 TGAAGAATTTTTATACCGGCTAACCTT 59.387 33.333 0.00 0.00 0.00 3.50
5377 9341 7.066645 GTGAAGAATTTTTATACCGGCTAACCT 59.933 37.037 0.00 0.00 0.00 3.50
5453 9418 8.964772 GGACCTGTAAGTACTATTTTCTAGTCA 58.035 37.037 0.00 0.00 0.00 3.41
5457 9422 9.537852 TTCTGGACCTGTAAGTACTATTTTCTA 57.462 33.333 0.00 0.00 0.00 2.10
5573 9538 6.093219 CCCTGTATAATAGCACATCATCAAGC 59.907 42.308 0.00 0.00 0.00 4.01
5658 9624 8.737175 GTGATTATATCATCAAGATTGTGGCAT 58.263 33.333 1.11 0.00 42.04 4.40
5752 9718 8.198109 ACTTCCTCTTTCTTTTTAAGGCTTTTC 58.802 33.333 4.45 0.00 0.00 2.29
5761 9727 5.300411 ACGGGACTTCCTCTTTCTTTTTA 57.700 39.130 0.00 0.00 35.95 1.52
5835 9801 2.872245 GCATAAGCTTCATAAGTCCGCA 59.128 45.455 0.00 0.00 37.91 5.69
5836 9802 2.872245 TGCATAAGCTTCATAAGTCCGC 59.128 45.455 0.00 0.00 42.74 5.54
5837 9803 3.871006 TGTGCATAAGCTTCATAAGTCCG 59.129 43.478 0.00 0.00 42.74 4.79
5839 9805 6.037500 TGTCATGTGCATAAGCTTCATAAGTC 59.962 38.462 0.00 0.00 42.74 3.01
5840 9806 5.882000 TGTCATGTGCATAAGCTTCATAAGT 59.118 36.000 0.00 0.00 42.74 2.24
5841 9807 6.197276 GTGTCATGTGCATAAGCTTCATAAG 58.803 40.000 0.00 0.00 42.74 1.73
5842 9808 5.220643 CGTGTCATGTGCATAAGCTTCATAA 60.221 40.000 0.00 0.00 42.74 1.90
5845 9850 2.416202 CGTGTCATGTGCATAAGCTTCA 59.584 45.455 0.00 0.00 42.74 3.02
5848 9853 2.099141 ACGTGTCATGTGCATAAGCT 57.901 45.000 0.00 0.00 42.74 3.74
5869 9874 4.022935 TGCTTTCCTTCTGCAATACAAGTG 60.023 41.667 0.00 0.00 33.48 3.16
5899 9904 8.571461 AGCATCCAACAATACCTTATCATATG 57.429 34.615 0.00 0.00 0.00 1.78
6059 10064 3.551846 TGGGAACAGAAAAGGTGACTTC 58.448 45.455 0.00 0.00 43.29 3.01
6166 10171 5.673337 TGTAACAGCAAGAATCTCACAAC 57.327 39.130 0.00 0.00 0.00 3.32
6253 10258 3.092334 GGTTTTACCAACCTGCAAGTG 57.908 47.619 0.00 0.00 38.42 3.16
6567 10587 5.421277 TCCGTTCCATAATTATTGTCGTGT 58.579 37.500 0.00 0.00 0.00 4.49
6601 10621 7.834068 TCAGTTCATGCTATGACTAAAAGAC 57.166 36.000 0.00 0.00 39.39 3.01
6623 10643 8.593945 AGTTGCTGGATAAGGATTAAAATTCA 57.406 30.769 0.00 0.00 32.17 2.57
6649 10669 2.623878 TAAAGTGGGAACGACAGCAA 57.376 45.000 0.00 0.00 0.00 3.91
6650 10670 2.224426 ACATAAAGTGGGAACGACAGCA 60.224 45.455 0.00 0.00 0.00 4.41
6666 10691 5.957771 ATCTGAACTGAGGGCTAACATAA 57.042 39.130 0.00 0.00 0.00 1.90
6722 10749 7.216317 CAGCACGCTTAATGTGTAAACTTTATC 59.784 37.037 9.07 0.00 39.53 1.75
6724 10751 6.017770 ACAGCACGCTTAATGTGTAAACTTTA 60.018 34.615 9.07 0.00 39.53 1.85
6739 10766 1.663695 ACAAGTGTTACAGCACGCTT 58.336 45.000 0.00 0.00 46.27 4.68
6741 10768 2.468532 AAACAAGTGTTACAGCACGC 57.531 45.000 0.00 0.00 43.61 5.34
6742 10769 5.395195 CACATAAAACAAGTGTTACAGCACG 59.605 40.000 0.00 0.00 43.61 5.34
6743 10770 6.262601 ACACATAAAACAAGTGTTACAGCAC 58.737 36.000 0.00 0.00 43.40 4.40
6744 10771 6.443934 ACACATAAAACAAGTGTTACAGCA 57.556 33.333 0.00 0.00 43.40 4.41
6745 10772 8.126700 AGTTACACATAAAACAAGTGTTACAGC 58.873 33.333 13.97 0.00 43.97 4.40
7180 11254 4.884164 GTCAGATAAACATCTTGAAGGGGG 59.116 45.833 0.00 0.00 0.00 5.40
7231 11305 6.209788 AGACTACCCTCTTCTAAGAAACTGTG 59.790 42.308 0.00 0.00 34.03 3.66
7262 11336 1.356124 AGCAAGATGGACCACAGAGT 58.644 50.000 0.00 0.00 0.00 3.24
7424 11498 4.058817 GCCTACCTAATACACATGCTGAC 58.941 47.826 0.00 0.00 0.00 3.51
7426 11500 3.403038 GGCCTACCTAATACACATGCTG 58.597 50.000 0.00 0.00 0.00 4.41
7707 11783 2.751806 GAGGAAGGACAAAGGCAGAATG 59.248 50.000 0.00 0.00 40.87 2.67
7854 11930 7.277098 GTCGCATTACTCAACCTTATTTGTCTA 59.723 37.037 0.00 0.00 0.00 2.59
7914 11990 3.118542 GCAAGAAATCATGGAATTCGGC 58.881 45.455 0.00 2.21 0.00 5.54
8037 12113 7.730084 TGGTCAGAAGAATAACCTCATATCTG 58.270 38.462 0.00 0.00 35.53 2.90
8058 12134 3.420893 TGAACAAAGGATGTGGATGGTC 58.579 45.455 0.00 0.00 42.99 4.02
8079 12155 6.256053 AGACACATTAAAAGGATGGTGGAAT 58.744 36.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.