AutoCloner

Multiple sequence alignment - TraesCS5B01G251100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G251100	chr5B	100.000	2945	0	0	1	2945	433640921	433643865	0.000000e+00	5439
1	TraesCS5B01G251100	chr5B	88.456	2850	294	21	118	2945	432785117	432782281	0.000000e+00	3408
2	TraesCS5B01G251100	chr5B	81.107	2980	491	52	1	2945	310692493	310695435	0.000000e+00	2318
3	TraesCS5B01G251100	chr5B	80.013	2982	513	64	1	2945	310650979	310648044	0.000000e+00	2128
4	TraesCS5B01G251100	chr4A	81.459	2988	480	58	1	2943	566717936	566720894	0.000000e+00	2381
5	TraesCS5B01G251100	chr4A	76.629	2978	558	94	10	2931	21705166	21702271	0.000000e+00	1517
6	TraesCS5B01G251100	chr2A	83.236	2559	377	43	1	2532	674924674	674927207	0.000000e+00	2302
7	TraesCS5B01G251100	chr2A	79.043	2987	518	80	1	2943	216479677	216482599	0.000000e+00	1949
8	TraesCS5B01G251100	chr2A	77.766	2793	525	74	210	2945	547989862	547987109	0.000000e+00	1629
9	TraesCS5B01G251100	chr2A	76.738	1741	362	37	1234	2945	547879304	547881030	0.000000e+00	931
10	TraesCS5B01G251100	chr2A	86.867	830	82	15	1	828	171577664	171578468	0.000000e+00	904
11	TraesCS5B01G251100	chr2A	86.988	830	70	20	1	828	132576061	132575268	0.000000e+00	900
12	TraesCS5B01G251100	chr2A	87.464	702	58	17	1	699	149351558	149350884	0.000000e+00	782
13	TraesCS5B01G251100	chr2A	78.225	1093	205	24	1877	2945	648847616	648846533	0.000000e+00	669
14	TraesCS5B01G251100	chr7A	80.633	2969	514	43	1	2931	466968943	466971888	0.000000e+00	2241
15	TraesCS5B01G251100	chr7A	80.579	2971	512	47	1	2931	466989364	466992309	0.000000e+00	2230
16	TraesCS5B01G251100	chr7A	78.169	2872	521	79	130	2943	159289887	159287064	0.000000e+00	1733
17	TraesCS5B01G251100	chrUn	79.443	2870	516	60	114	2943	198093972	198091137	0.000000e+00	1964
18	TraesCS5B01G251100	chr3A	79.152	2854	501	69	135	2933	455329186	455332000	0.000000e+00	1888
19	TraesCS5B01G251100	chr3A	78.332	2866	522	80	134	2943	86439520	86436698	0.000000e+00	1760
20	TraesCS5B01G251100	chr3A	77.875	2861	547	61	134	2943	409967948	409965123	0.000000e+00	1698
21	TraesCS5B01G251100	chr3A	88.087	831	69	16	1	828	8559088	8559891	0.000000e+00	959
22	TraesCS5B01G251100	chr3A	87.470	838	82	17	1	828	445194995	445194171	0.000000e+00	944
23	TraesCS5B01G251100	chr5A	78.408	2978	537	79	1	2925	63728694	63725770	0.000000e+00	1840
24	TraesCS5B01G251100	chr5A	78.004	2855	519	79	127	2931	92767137	92769932	0.000000e+00	1692
25	TraesCS5B01G251100	chr6A	82.630	2038	324	28	123	2148	75832346	75830327	0.000000e+00	1775
26	TraesCS5B01G251100	chr6A	78.084	2870	510	88	134	2943	230923978	230921168	0.000000e+00	1705
27	TraesCS5B01G251100	chr6A	77.571	2363	463	57	618	2943	299658260	299655928	0.000000e+00	1365
28	TraesCS5B01G251100	chr6A	87.380	832	73	20	1	828	464705643	464704840	0.000000e+00	926
29	TraesCS5B01G251100	chr6A	88.506	87	10	0	1	87	161125774	161125688	4.010000e-19	106
30	TraesCS5B01G251100	chr1A	87.642	704	63	13	1	700	138836741	138837424	0.000000e+00	797
31	TraesCS5B01G251100	chr1A	86.853	715	71	19	1	701	249800745	249800040	0.000000e+00	778

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G251100	chr5B	433640921	433643865	2944	False	5439	5439	100.000	1	2945	1	chr5B.!!$F2	2944
1	TraesCS5B01G251100	chr5B	432782281	432785117	2836	True	3408	3408	88.456	118	2945	1	chr5B.!!$R2	2827
2	TraesCS5B01G251100	chr5B	310692493	310695435	2942	False	2318	2318	81.107	1	2945	1	chr5B.!!$F1	2944
3	TraesCS5B01G251100	chr5B	310648044	310650979	2935	True	2128	2128	80.013	1	2945	1	chr5B.!!$R1	2944
4	TraesCS5B01G251100	chr4A	566717936	566720894	2958	False	2381	2381	81.459	1	2943	1	chr4A.!!$F1	2942
5	TraesCS5B01G251100	chr4A	21702271	21705166	2895	True	1517	1517	76.629	10	2931	1	chr4A.!!$R1	2921
6	TraesCS5B01G251100	chr2A	674924674	674927207	2533	False	2302	2302	83.236	1	2532	1	chr2A.!!$F4	2531
7	TraesCS5B01G251100	chr2A	216479677	216482599	2922	False	1949	1949	79.043	1	2943	1	chr2A.!!$F2	2942
8	TraesCS5B01G251100	chr2A	547987109	547989862	2753	True	1629	1629	77.766	210	2945	1	chr2A.!!$R3	2735
9	TraesCS5B01G251100	chr2A	547879304	547881030	1726	False	931	931	76.738	1234	2945	1	chr2A.!!$F3	1711
10	TraesCS5B01G251100	chr2A	171577664	171578468	804	False	904	904	86.867	1	828	1	chr2A.!!$F1	827
11	TraesCS5B01G251100	chr2A	132575268	132576061	793	True	900	900	86.988	1	828	1	chr2A.!!$R1	827
12	TraesCS5B01G251100	chr2A	149350884	149351558	674	True	782	782	87.464	1	699	1	chr2A.!!$R2	698
13	TraesCS5B01G251100	chr2A	648846533	648847616	1083	True	669	669	78.225	1877	2945	1	chr2A.!!$R4	1068
14	TraesCS5B01G251100	chr7A	466968943	466971888	2945	False	2241	2241	80.633	1	2931	1	chr7A.!!$F1	2930
15	TraesCS5B01G251100	chr7A	466989364	466992309	2945	False	2230	2230	80.579	1	2931	1	chr7A.!!$F2	2930
16	TraesCS5B01G251100	chr7A	159287064	159289887	2823	True	1733	1733	78.169	130	2943	1	chr7A.!!$R1	2813
17	TraesCS5B01G251100	chrUn	198091137	198093972	2835	True	1964	1964	79.443	114	2943	1	chrUn.!!$R1	2829
18	TraesCS5B01G251100	chr3A	455329186	455332000	2814	False	1888	1888	79.152	135	2933	1	chr3A.!!$F2	2798
19	TraesCS5B01G251100	chr3A	86436698	86439520	2822	True	1760	1760	78.332	134	2943	1	chr3A.!!$R1	2809
20	TraesCS5B01G251100	chr3A	409965123	409967948	2825	True	1698	1698	77.875	134	2943	1	chr3A.!!$R2	2809
21	TraesCS5B01G251100	chr3A	8559088	8559891	803	False	959	959	88.087	1	828	1	chr3A.!!$F1	827
22	TraesCS5B01G251100	chr3A	445194171	445194995	824	True	944	944	87.470	1	828	1	chr3A.!!$R3	827
23	TraesCS5B01G251100	chr5A	63725770	63728694	2924	True	1840	1840	78.408	1	2925	1	chr5A.!!$R1	2924
24	TraesCS5B01G251100	chr5A	92767137	92769932	2795	False	1692	1692	78.004	127	2931	1	chr5A.!!$F1	2804
25	TraesCS5B01G251100	chr6A	75830327	75832346	2019	True	1775	1775	82.630	123	2148	1	chr6A.!!$R1	2025
26	TraesCS5B01G251100	chr6A	230921168	230923978	2810	True	1705	1705	78.084	134	2943	1	chr6A.!!$R3	2809
27	TraesCS5B01G251100	chr6A	299655928	299658260	2332	True	1365	1365	77.571	618	2943	1	chr6A.!!$R4	2325
28	TraesCS5B01G251100	chr6A	464704840	464705643	803	True	926	926	87.380	1	828	1	chr6A.!!$R5	827
29	TraesCS5B01G251100	chr1A	138836741	138837424	683	False	797	797	87.642	1	700	1	chr1A.!!$F1	699
30	TraesCS5B01G251100	chr1A	249800040	249800745	705	True	778	778	86.853	1	701	1	chr1A.!!$R1	700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
626	708	0.179009	GATGAAGCTGGGCCATGCTA	60.179	55.0	24.35	14.18	38.75	3.49	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2408	2517	0.524862	AACTTACTCGTCGATGGCGT	59.475	50.0	4.48	5.35	38.98	5.68	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	63	1.135333	GTTCGATCGCCCTTCTCTCTT	59.865	52.381	11.09	0.00	0.00	2.85
72	85	4.532834	GCCCTTCTCTCTTTCTCTCTCTA	58.467	47.826	0.00	0.00	0.00	2.43
88	126	4.830046	TCTCTCTACTTGTTGCTCTCTTGT	59.170	41.667	0.00	0.00	0.00	3.16
89	127	4.876125	TCTCTACTTGTTGCTCTCTTGTG	58.124	43.478	0.00	0.00	0.00	3.33
96	134	1.392853	GTTGCTCTCTTGTGCGATCAG	59.607	52.381	0.00	0.00	35.65	2.90
97	135	0.890683	TGCTCTCTTGTGCGATCAGA	59.109	50.000	0.00	0.00	35.65	3.27
100	138	2.480932	GCTCTCTTGTGCGATCAGATCA	60.481	50.000	11.12	0.00	0.00	2.92
101	139	3.373849	CTCTCTTGTGCGATCAGATCAG	58.626	50.000	11.12	4.80	0.00	2.90
103	141	1.205417	TCTTGTGCGATCAGATCAGCA	59.795	47.619	19.61	19.61	36.81	4.41
107	145	2.624838	TGTGCGATCAGATCAGCATCTA	59.375	45.455	23.67	14.93	37.25	1.98
110	148	3.508793	TGCGATCAGATCAGCATCTATCA	59.491	43.478	19.61	2.94	37.25	2.15
112	150	4.674475	CGATCAGATCAGCATCTATCAGG	58.326	47.826	11.12	0.00	37.25	3.86
115	153	3.831333	TCAGATCAGCATCTATCAGGTCC	59.169	47.826	0.00	0.00	37.25	4.46
183	233	2.989571	CCCTAGGCCTCTTCCCAAATAT	59.010	50.000	9.68	0.00	0.00	1.28
237	291	1.470979	CGAAGGGGAACATCTGGTACG	60.471	57.143	0.00	0.00	0.00	3.67
246	300	4.299978	GAACATCTGGTACGCTTATCCTC	58.700	47.826	0.00	0.00	0.00	3.71
511	591	1.524482	GCCTTGATCTCTCCGCCTT	59.476	57.895	0.00	0.00	0.00	4.35
626	708	0.179009	GATGAAGCTGGGCCATGCTA	60.179	55.000	24.35	14.18	38.75	3.49
638	723	1.307647	CATGCTAGGCCCCCACTTT	59.692	57.895	0.00	0.00	0.00	2.66
650	735	2.677003	CCACTTTAGCCACGCCGTG	61.677	63.158	10.95	10.95	0.00	4.94
862	954	2.512974	CCCTTATTCCGCGCCGTT	60.513	61.111	0.00	0.00	0.00	4.44
898	991	0.830444	TCGTACACAACTGCCCCTCT	60.830	55.000	0.00	0.00	0.00	3.69
905	999	1.075659	AACTGCCCCTCTTTCCTGC	59.924	57.895	0.00	0.00	0.00	4.85
992	1096	4.682563	TCTCACATCTTTCTCCTTCTCCT	58.317	43.478	0.00	0.00	0.00	3.69
1119	1223	1.133809	TGGAGTGCCTGGGTAAGCTT	61.134	55.000	3.48	3.48	34.31	3.74
1121	1225	1.490910	GGAGTGCCTGGGTAAGCTTAT	59.509	52.381	9.88	0.00	0.00	1.73
1196	1300	2.682136	TCGCTTCCCCACGGATCA	60.682	61.111	0.00	0.00	38.24	2.92
1230	1334	3.357079	CCTTGCTTTGCCGACGCT	61.357	61.111	0.00	0.00	35.36	5.07
1335	1440	1.140852	CCCGAATCCATTGTGCTCCTA	59.859	52.381	0.00	0.00	0.00	2.94
1419	1524	0.610687	ACTTCTTCTCCCTTCGCCTG	59.389	55.000	0.00	0.00	0.00	4.85
1425	1530	2.688666	TCCCTTCGCCTGGCTGAT	60.689	61.111	17.92	0.00	0.00	2.90
1473	1578	0.447406	TCATTGCCGCATCTGAAACG	59.553	50.000	0.00	0.00	0.00	3.60
1494	1599	1.826385	CGGCTTCAGGGATTGACTTT	58.174	50.000	0.00	0.00	34.94	2.66
1661	1768	4.753877	CGTCTGGCGTCGCTTCGA	62.754	66.667	18.11	8.26	35.54	3.71
1662	1769	2.202623	GTCTGGCGTCGCTTCGAT	60.203	61.111	18.11	0.00	38.42	3.59
1672	1779	2.222596	CGTCGCTTCGATTTCCTGAAAG	60.223	50.000	0.00	0.00	38.42	2.62
1844	1952	2.938756	GCACAGTGCTTCTAGCCTTGAT	60.939	50.000	18.92	0.00	41.51	2.57
1896	2004	1.308216	AGGGGCCCTGCTGTATCTT	60.308	57.895	28.21	0.00	29.57	2.40
1942	2050	1.772836	GCAGATGCCCTCCTTTGATT	58.227	50.000	0.00	0.00	34.31	2.57
1998	2106	0.741221	GCGAGAATCCTGTGGTGGTC	60.741	60.000	0.00	0.00	0.00	4.02
2012	2120	2.124695	GGTCACCATCCTTCCCGC	60.125	66.667	0.00	0.00	0.00	6.13
2014	2122	1.335132	GGTCACCATCCTTCCCGCTA	61.335	60.000	0.00	0.00	0.00	4.26
2044	2152	3.691342	CCTCCTCGCGTGGTGGAA	61.691	66.667	33.72	13.27	41.84	3.53
2045	2153	2.579201	CTCCTCGCGTGGTGGAAT	59.421	61.111	25.10	0.00	37.83	3.01
2096	2204	1.065854	GGTTCCTGATGAGGTGACTGG	60.066	57.143	0.00	0.00	44.43	4.00
2099	2207	1.556373	CCTGATGAGGTGACTGGGCA	61.556	60.000	0.00	0.00	44.43	5.36
2103	2211	0.915872	ATGAGGTGACTGGGCATGGA	60.916	55.000	0.00	0.00	44.43	3.41
2164	2272	1.595382	GCTGAGGACAACGTGCAGT	60.595	57.895	0.00	0.00	0.00	4.40
2215	2323	1.079750	GTCCTGGCCGTGTCTTCTC	60.080	63.158	0.00	0.00	0.00	2.87
2307	2416	1.077429	GGTTGATCCCTGCACCCTC	60.077	63.158	0.00	0.00	0.00	4.30
2308	2417	1.685224	GTTGATCCCTGCACCCTCA	59.315	57.895	0.00	0.00	0.00	3.86
2310	2419	1.490490	GTTGATCCCTGCACCCTCATA	59.510	52.381	0.00	0.00	0.00	2.15
2408	2517	0.454600	CTGAAGCGCCGGAAGTACTA	59.545	55.000	5.05	0.00	0.00	1.82
2427	2536	0.524862	ACGCCATCGACGAGTAAGTT	59.475	50.000	3.01	0.00	39.41	2.66
2455	2566	3.943137	TTGGCTCCCGGTCCCATCT	62.943	63.158	0.00	0.00	0.00	2.90
2459	2570	1.460305	CTCCCGGTCCCATCTCCAT	60.460	63.158	0.00	0.00	0.00	3.41
2503	2614	2.042537	TCTCCCGGCTGAGCTCAT	60.043	61.111	18.63	0.00	32.22	2.90
2507	2618	3.473647	CCGGCTGAGCTCATGGGA	61.474	66.667	18.63	0.00	0.00	4.37
2509	2620	2.729479	CGGCTGAGCTCATGGGAGT	61.729	63.158	18.63	0.00	43.37	3.85
2512	2623	1.375098	GCTGAGCTCATGGGAGTTGC	61.375	60.000	18.63	10.76	43.37	4.17
2514	2625	0.035725	TGAGCTCATGGGAGTTGCTG	60.036	55.000	13.74	0.00	43.37	4.41
2515	2626	0.251354	GAGCTCATGGGAGTTGCTGA	59.749	55.000	9.40	0.00	43.37	4.26
2517	2628	1.284198	AGCTCATGGGAGTTGCTGAAT	59.716	47.619	0.00	0.00	43.37	2.57
2519	2630	2.159282	GCTCATGGGAGTTGCTGAATTG	60.159	50.000	0.00	0.00	43.37	2.32
2528	2655	0.960364	TTGCTGAATTGTCGCCTCCC	60.960	55.000	0.00	0.00	0.00	4.30
2529	2656	1.078143	GCTGAATTGTCGCCTCCCT	60.078	57.895	0.00	0.00	0.00	4.20
2627	2754	1.258445	GCGGTCCTTCTTCTCCTCCA	61.258	60.000	0.00	0.00	0.00	3.86
2641	2768	1.676678	CCTCCAATCTTCCTCCGCGA	61.677	60.000	8.23	0.00	0.00	5.87
2653	2780	2.047274	CCGCGAGCCCTTCTTCAA	60.047	61.111	8.23	0.00	0.00	2.69
2657	2784	0.729690	GCGAGCCCTTCTTCAACATC	59.270	55.000	0.00	0.00	0.00	3.06
2874	3001	0.179000	AGGCGATGATGTGGAAGACC	59.821	55.000	0.00	0.00	0.00	3.85
2881	3008	0.460987	GATGTGGAAGACCTGCTCGG	60.461	60.000	0.00	0.00	37.04	4.63
2882	3009	0.904865	ATGTGGAAGACCTGCTCGGA	60.905	55.000	0.00	0.00	37.04	4.55

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	63	5.321102	AGAGAGCAACAAGTAGAGAGAGAA	58.679	41.667	0.00	0.00	0.00	2.87
72	85	0.940126	CGCACAAGAGAGCAACAAGT	59.060	50.000	0.00	0.00	0.00	3.16
88	126	3.508793	TGATAGATGCTGATCTGATCGCA	59.491	43.478	26.72	26.72	39.44	5.10
89	127	4.106909	CTGATAGATGCTGATCTGATCGC	58.893	47.826	20.07	20.07	39.44	4.58
96	134	3.831333	TCTGGACCTGATAGATGCTGATC	59.169	47.826	0.00	0.00	0.00	2.92
97	135	3.854437	TCTGGACCTGATAGATGCTGAT	58.146	45.455	0.00	0.00	0.00	2.90
100	138	3.172339	GGATCTGGACCTGATAGATGCT	58.828	50.000	13.41	0.00	36.65	3.79
101	139	2.235898	GGGATCTGGACCTGATAGATGC	59.764	54.545	13.41	7.98	38.20	3.91
103	141	3.667114	AGAGGGATCTGGACCTGATAGAT	59.333	47.826	13.41	2.89	37.18	1.98
107	145	2.158234	GGTAGAGGGATCTGGACCTGAT	60.158	54.545	13.32	13.32	37.18	2.90
110	148	0.563672	GGGTAGAGGGATCTGGACCT	59.436	60.000	0.00	0.00	40.54	3.85
112	150	1.710816	CAGGGTAGAGGGATCTGGAC	58.289	60.000	0.00	0.00	0.00	4.02
166	216	4.540715	CTCAAATATTTGGGAAGAGGCCT	58.459	43.478	21.44	3.86	41.16	5.19
237	291	5.735766	AGACCAACTTTAGTGAGGATAAGC	58.264	41.667	8.20	0.00	0.00	3.09
246	300	2.480419	CAGGCGAAGACCAACTTTAGTG	59.520	50.000	0.00	0.00	31.70	2.74
626	708	2.534272	TGGCTAAAGTGGGGGCCT	60.534	61.111	0.84	0.00	44.36	5.19
748	833	2.574018	GCTTCGCCCTTGCCCTTTT	61.574	57.895	0.00	0.00	0.00	2.27
898	991	2.032528	CGGTCCAGCAGCAGGAAA	59.967	61.111	8.37	0.00	36.80	3.13
1196	1300	3.135530	GCAAGGGACCTCAGTGATTATCT	59.864	47.826	0.00	0.00	0.00	1.98
1230	1334	0.608035	GAATCAGACCCGCCCACAAA	60.608	55.000	0.00	0.00	0.00	2.83
1263	1368	2.275318	GAGAGGACGGCATTGAAGAAG	58.725	52.381	0.00	0.00	0.00	2.85
1335	1440	2.481952	GCAGACGAAAGCAAAGACTGAT	59.518	45.455	0.00	0.00	0.00	2.90
1377	1482	2.363406	AGCAAGGCAATGGAGGGC	60.363	61.111	0.00	0.00	0.00	5.19
1419	1524	4.125703	CTGAACATTGAGTAGGATCAGCC	58.874	47.826	0.00	0.00	0.00	4.85
1425	1530	2.299013	ACACGCTGAACATTGAGTAGGA	59.701	45.455	0.00	0.00	0.00	2.94
1473	1578	2.115291	GTCAATCCCTGAAGCCGCC	61.115	63.158	0.00	0.00	35.22	6.13
1494	1599	0.949105	GCGAAGGCGAAGGAAGTTCA	60.949	55.000	5.01	0.00	40.82	3.18
1580	1687	2.283143	ATTGGGCATAGCGGGCAAGA	62.283	55.000	0.00	0.00	34.52	3.02
1633	1740	4.069232	CCAGACGAAGGCGAGCCA	62.069	66.667	17.18	0.00	41.64	4.75
1653	1760	2.346803	CCTTTCAGGAAATCGAAGCGA	58.653	47.619	0.00	0.00	37.67	4.93
1661	1768	0.681243	GCCGAGCCCTTTCAGGAAAT	60.681	55.000	0.00	0.00	37.67	2.17
1662	1769	1.303317	GCCGAGCCCTTTCAGGAAA	60.303	57.895	0.00	0.00	37.67	3.13
1824	1932	2.462456	TCAAGGCTAGAAGCACTGTG	57.538	50.000	2.76	2.76	44.75	3.66
1998	2106	1.227674	GCTAGCGGGAAGGATGGTG	60.228	63.158	0.00	0.00	0.00	4.17
2035	2143	2.186903	CCTCCCGATTCCACCACG	59.813	66.667	0.00	0.00	0.00	4.94
2044	2152	1.905843	CGATCTCCTGCCTCCCGAT	60.906	63.158	0.00	0.00	0.00	4.18
2045	2153	2.519541	CGATCTCCTGCCTCCCGA	60.520	66.667	0.00	0.00	0.00	5.14
2142	2250	1.374758	CACGTTGTCCTCAGCCTCC	60.375	63.158	0.00	0.00	0.00	4.30
2198	2306	1.228894	AGAGAAGACACGGCCAGGA	60.229	57.895	2.24	0.00	0.00	3.86
2215	2323	2.743752	CGCCGTCAACAGCCATGAG	61.744	63.158	0.00	0.00	0.00	2.90
2236	2345	2.665603	GGGAGCGCTTTCCTCACT	59.334	61.111	13.26	0.00	37.40	3.41
2307	2416	1.525995	ACGGAAGCGGCCCAATATG	60.526	57.895	0.00	0.00	0.00	1.78
2308	2417	1.525995	CACGGAAGCGGCCCAATAT	60.526	57.895	0.00	0.00	0.00	1.28
2310	2419	4.344865	ACACGGAAGCGGCCCAAT	62.345	61.111	0.00	0.00	0.00	3.16
2408	2517	0.524862	AACTTACTCGTCGATGGCGT	59.475	50.000	4.48	5.35	38.98	5.68
2427	2536	1.271379	CCGGGAGCCAAGAAAAAGAGA	60.271	52.381	0.00	0.00	0.00	3.10
2455	2566	6.209589	GCAGAGTAAGGATCAGTATACATGGA	59.790	42.308	5.50	0.05	0.00	3.41
2459	2570	5.536538	CCTGCAGAGTAAGGATCAGTATACA	59.463	44.000	17.39	0.00	35.40	2.29
2503	2614	1.522668	CGACAATTCAGCAACTCCCA	58.477	50.000	0.00	0.00	0.00	4.37
2507	2618	1.160137	GAGGCGACAATTCAGCAACT	58.840	50.000	0.00	0.00	0.00	3.16
2509	2620	0.960364	GGGAGGCGACAATTCAGCAA	60.960	55.000	0.00	0.00	0.00	3.91
2512	2623	1.089920	CAAGGGAGGCGACAATTCAG	58.910	55.000	0.00	0.00	0.00	3.02
2514	2625	1.657751	GGCAAGGGAGGCGACAATTC	61.658	60.000	0.00	0.00	0.00	2.17
2515	2626	1.678970	GGCAAGGGAGGCGACAATT	60.679	57.895	0.00	0.00	0.00	2.32
2528	2655	3.793144	GCGCTTGAGGACGGCAAG	61.793	66.667	0.00	0.00	44.22	4.01
2529	2656	4.314440	AGCGCTTGAGGACGGCAA	62.314	61.111	2.64	0.00	0.00	4.52
2627	2754	2.501610	GGCTCGCGGAGGAAGATT	59.498	61.111	6.13	0.00	0.00	2.40
2641	2768	0.678048	GGCGATGTTGAAGAAGGGCT	60.678	55.000	0.00	0.00	0.00	5.19
2724	2851	2.509916	CAGCCCATCTCCAGGAGC	59.490	66.667	12.26	0.00	0.00	4.70
2857	2984	1.293924	CAGGTCTTCCACATCATCGC	58.706	55.000	0.00	0.00	35.89	4.58

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.