Multiple sequence alignment - TraesCS5B01G251000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G251000 chr5B 100.000 4412 0 0 293 4704 433525451 433529862 0.000000e+00 8148.0
1 TraesCS5B01G251000 chr5B 97.949 195 3 1 2008 2202 214934736 214934929 2.100000e-88 337.0
2 TraesCS5B01G251000 chr5B 96.117 206 4 4 1987 2191 544855918 544855716 2.710000e-87 333.0
3 TraesCS5B01G251000 chr5B 100.000 92 0 0 1 92 433525159 433525250 2.250000e-38 171.0
4 TraesCS5B01G251000 chr5B 89.313 131 6 4 2742 2872 433527788 433527910 1.750000e-34 158.0
5 TraesCS5B01G251000 chr5B 89.313 131 6 4 2630 2752 433527900 433528030 1.750000e-34 158.0
6 TraesCS5B01G251000 chr5B 98.485 66 0 1 2196 2261 138779379 138779315 1.070000e-21 115.0
7 TraesCS5B01G251000 chr5D 96.947 1900 42 10 2254 4139 366047179 366049076 0.000000e+00 3173.0
8 TraesCS5B01G251000 chr5D 89.918 1577 82 36 460 2006 366045662 366047191 0.000000e+00 1960.0
9 TraesCS5B01G251000 chr5D 97.786 271 3 3 4437 4704 366049242 366049512 9.220000e-127 464.0
10 TraesCS5B01G251000 chr5D 93.750 128 6 2 2746 2872 366047558 366047684 1.730000e-44 191.0
11 TraesCS5B01G251000 chr5D 86.127 173 16 2 4223 4395 366049078 366049242 3.740000e-41 180.0
12 TraesCS5B01G251000 chr5D 89.313 131 6 4 2630 2752 366047674 366047804 1.750000e-34 158.0
13 TraesCS5B01G251000 chr5D 89.516 124 10 3 4112 4233 205118196 205118318 2.270000e-33 154.0
14 TraesCS5B01G251000 chr5A 92.757 1988 94 21 2742 4704 468462204 468464166 0.000000e+00 2828.0
15 TraesCS5B01G251000 chr5A 86.877 1745 123 43 308 2006 468460157 468461841 0.000000e+00 1857.0
16 TraesCS5B01G251000 chr5A 92.338 509 27 8 2254 2752 468461829 468462335 0.000000e+00 713.0
17 TraesCS5B01G251000 chr5A 93.333 240 10 2 2008 2247 651496170 651496403 2.690000e-92 350.0
18 TraesCS5B01G251000 chr5A 92.248 129 9 1 4106 4233 244757944 244758072 1.040000e-41 182.0
19 TraesCS5B01G251000 chr5A 82.386 176 27 4 4095 4268 669849097 669848924 2.930000e-32 150.0
20 TraesCS5B01G251000 chr5A 94.595 74 1 2 2196 2267 387346224 387346296 1.380000e-20 111.0
21 TraesCS5B01G251000 chr1B 98.438 192 2 1 2004 2195 397427278 397427468 2.100000e-88 337.0
22 TraesCS5B01G251000 chr3B 98.429 191 2 1 2002 2192 79948902 79949091 7.540000e-88 335.0
23 TraesCS5B01G251000 chr3B 92.308 78 3 3 2196 2271 25290599 25290523 1.790000e-19 108.0
24 TraesCS5B01G251000 chr1A 98.936 188 1 1 2004 2191 583789320 583789134 7.540000e-88 335.0
25 TraesCS5B01G251000 chr1A 86.452 155 16 4 4097 4247 104942419 104942572 1.050000e-36 165.0
26 TraesCS5B01G251000 chr1A 87.234 141 14 4 4095 4234 242003463 242003326 1.750000e-34 158.0
27 TraesCS5B01G251000 chr1A 89.062 128 12 2 4095 4221 520581080 520581206 1.750000e-34 158.0
28 TraesCS5B01G251000 chr3A 98.421 190 2 1 2009 2198 568002183 568002371 2.710000e-87 333.0
29 TraesCS5B01G251000 chr3A 91.971 137 9 2 4095 4230 464907565 464907700 1.730000e-44 191.0
30 TraesCS5B01G251000 chr3A 85.227 176 22 4 4095 4268 353160606 353160433 1.350000e-40 178.0
31 TraesCS5B01G251000 chr3A 84.848 165 21 4 4093 4256 644815012 644815173 3.770000e-36 163.0
32 TraesCS5B01G251000 chr2B 97.462 197 2 3 1998 2191 409336366 409336562 2.710000e-87 333.0
33 TraesCS5B01G251000 chr2B 98.919 185 2 0 2007 2191 657198161 657197977 9.760000e-87 331.0
34 TraesCS5B01G251000 chr6D 91.367 139 11 1 4095 4233 249987073 249987210 6.210000e-44 189.0
35 TraesCS5B01G251000 chr6D 88.571 140 13 3 4095 4233 105578891 105579028 2.910000e-37 167.0
36 TraesCS5B01G251000 chr6D 84.892 139 20 1 4095 4233 392789979 392789842 6.350000e-29 139.0
37 TraesCS5B01G251000 chr6D 84.375 128 19 1 4106 4233 292378393 292378519 1.780000e-24 124.0
38 TraesCS5B01G251000 chr6B 90.714 140 11 2 4095 4233 337232190 337232052 8.040000e-43 185.0
39 TraesCS5B01G251000 chr2D 89.286 140 13 2 4095 4233 256675147 256675285 1.740000e-39 174.0
40 TraesCS5B01G251000 chr6A 89.286 140 12 3 4095 4233 127884429 127884566 6.260000e-39 172.0
41 TraesCS5B01G251000 chr6A 90.698 129 11 1 4106 4233 270600370 270600498 2.250000e-38 171.0
42 TraesCS5B01G251000 chr6A 87.302 63 6 2 392 454 459162580 459162520 2.350000e-08 71.3
43 TraesCS5B01G251000 chr4A 84.659 176 23 4 4095 4268 471161445 471161272 6.260000e-39 172.0
44 TraesCS5B01G251000 chr7B 84.971 173 21 5 4099 4268 723260798 723260968 2.250000e-38 171.0
45 TraesCS5B01G251000 chr7B 84.971 173 21 5 4099 4268 723420170 723420340 2.250000e-38 171.0
46 TraesCS5B01G251000 chr7B 95.775 71 1 2 2196 2265 548316761 548316692 3.850000e-21 113.0
47 TraesCS5B01G251000 chr7B 93.421 76 2 3 2196 2271 462488893 462488821 4.980000e-20 110.0
48 TraesCS5B01G251000 chr2A 84.091 176 24 4 4095 4268 132871597 132871770 2.910000e-37 167.0
49 TraesCS5B01G251000 chr2A 98.485 66 0 1 2188 2253 654912085 654912149 1.070000e-21 115.0
50 TraesCS5B01G251000 chr1D 89.062 128 12 2 4095 4221 424737973 424738099 1.750000e-34 158.0
51 TraesCS5B01G251000 chr1D 84.962 133 19 1 4096 4228 402828160 402828029 2.950000e-27 134.0
52 TraesCS5B01G251000 chr3D 84.049 163 22 4 4095 4254 272096111 272096272 2.270000e-33 154.0
53 TraesCS5B01G251000 chr4D 84.722 144 12 4 309 451 420498033 420498167 8.210000e-28 135.0
54 TraesCS5B01G251000 chr7A 93.421 76 3 2 2193 2268 398747572 398747645 1.380000e-20 111.0
55 TraesCS5B01G251000 chr4B 92.208 77 4 2 2196 2271 260213798 260213723 1.790000e-19 108.0
56 TraesCS5B01G251000 chrUn 94.030 67 3 1 4171 4236 252259125 252259191 3.000000e-17 100.0
57 TraesCS5B01G251000 chrUn 94.030 67 3 1 4171 4236 285666076 285666010 3.000000e-17 100.0
58 TraesCS5B01G251000 chrUn 94.030 67 3 1 4171 4236 358172805 358172739 3.000000e-17 100.0
59 TraesCS5B01G251000 chrUn 94.030 67 3 1 4171 4236 363069929 363069995 3.000000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G251000 chr5B 433525159 433529862 4703 False 2158.750000 8148 94.656500 1 4704 4 chr5B.!!$F2 4703
1 TraesCS5B01G251000 chr5D 366045662 366049512 3850 False 1021.000000 3173 92.306833 460 4704 6 chr5D.!!$F2 4244
2 TraesCS5B01G251000 chr5A 468460157 468464166 4009 False 1799.333333 2828 90.657333 308 4704 3 chr5A.!!$F4 4396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
685 702 0.033366 AAAACAATTCCTGCGGTGGC 59.967 50.0 0.00 0.00 40.52 5.01 F
1683 1754 0.107752 GCAGAAGCAGAGGGAAGAGG 60.108 60.0 0.00 0.00 41.58 3.69 F
2045 2117 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.0 12.44 8.34 40.80 4.35 F
2125 2197 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.0 0.00 0.00 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2111 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85 R
3253 3347 1.271102 AGAGACTCGGTTGTTCTCTGC 59.729 52.381 0.00 0.00 36.54 4.26 R
3302 3396 1.950909 GAACCGGTTCACATTCCAACA 59.049 47.619 36.67 0.00 39.31 3.33 R
4065 4164 2.009774 CAGGTTGAACCATCGGATGTC 58.990 52.381 17.83 9.06 41.95 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.934083 GGCTCGCCTTGTCTTTTCT 58.066 52.632 0.00 0.00 0.00 2.52
19 20 1.239347 GGCTCGCCTTGTCTTTTCTT 58.761 50.000 0.00 0.00 0.00 2.52
20 21 1.068954 GGCTCGCCTTGTCTTTTCTTG 60.069 52.381 0.00 0.00 0.00 3.02
21 22 1.068954 GCTCGCCTTGTCTTTTCTTGG 60.069 52.381 0.00 0.00 0.00 3.61
22 23 0.951558 TCGCCTTGTCTTTTCTTGGC 59.048 50.000 0.00 0.00 37.24 4.52
23 24 0.039165 CGCCTTGTCTTTTCTTGGCC 60.039 55.000 0.00 0.00 37.29 5.36
24 25 1.332195 GCCTTGTCTTTTCTTGGCCT 58.668 50.000 3.32 0.00 34.81 5.19
25 26 1.688735 GCCTTGTCTTTTCTTGGCCTT 59.311 47.619 3.32 0.00 34.81 4.35
26 27 2.546584 GCCTTGTCTTTTCTTGGCCTTG 60.547 50.000 3.32 0.00 34.81 3.61
27 28 2.036346 CCTTGTCTTTTCTTGGCCTTGG 59.964 50.000 3.32 0.00 0.00 3.61
28 29 2.452600 TGTCTTTTCTTGGCCTTGGT 57.547 45.000 3.32 0.00 0.00 3.67
29 30 2.306847 TGTCTTTTCTTGGCCTTGGTC 58.693 47.619 3.32 0.00 0.00 4.02
30 31 1.613925 GTCTTTTCTTGGCCTTGGTCC 59.386 52.381 3.32 0.00 0.00 4.46
31 32 0.969149 CTTTTCTTGGCCTTGGTCCC 59.031 55.000 3.32 0.00 0.00 4.46
32 33 0.471022 TTTTCTTGGCCTTGGTCCCC 60.471 55.000 3.32 0.00 0.00 4.81
33 34 1.368268 TTTCTTGGCCTTGGTCCCCT 61.368 55.000 3.32 0.00 0.00 4.79
34 35 1.789576 TTCTTGGCCTTGGTCCCCTC 61.790 60.000 3.32 0.00 0.00 4.30
35 36 3.628646 CTTGGCCTTGGTCCCCTCG 62.629 68.421 3.32 0.00 0.00 4.63
38 39 4.410400 GCCTTGGTCCCCTCGGTG 62.410 72.222 0.00 0.00 0.00 4.94
39 40 3.717294 CCTTGGTCCCCTCGGTGG 61.717 72.222 0.00 0.00 0.00 4.61
40 41 4.410400 CTTGGTCCCCTCGGTGGC 62.410 72.222 0.00 0.00 0.00 5.01
41 42 4.974438 TTGGTCCCCTCGGTGGCT 62.974 66.667 0.00 0.00 0.00 4.75
42 43 4.974438 TGGTCCCCTCGGTGGCTT 62.974 66.667 0.00 0.00 0.00 4.35
43 44 4.410400 GGTCCCCTCGGTGGCTTG 62.410 72.222 0.00 0.00 0.00 4.01
44 45 3.319198 GTCCCCTCGGTGGCTTGA 61.319 66.667 0.00 0.00 0.00 3.02
45 46 2.285368 TCCCCTCGGTGGCTTGAT 60.285 61.111 0.00 0.00 0.00 2.57
46 47 1.002403 TCCCCTCGGTGGCTTGATA 59.998 57.895 0.00 0.00 0.00 2.15
47 48 0.399949 TCCCCTCGGTGGCTTGATAT 60.400 55.000 0.00 0.00 0.00 1.63
48 49 0.474184 CCCCTCGGTGGCTTGATATT 59.526 55.000 0.00 0.00 0.00 1.28
49 50 1.597742 CCCTCGGTGGCTTGATATTG 58.402 55.000 0.00 0.00 0.00 1.90
50 51 1.597742 CCTCGGTGGCTTGATATTGG 58.402 55.000 0.00 0.00 0.00 3.16
51 52 1.597742 CTCGGTGGCTTGATATTGGG 58.402 55.000 0.00 0.00 0.00 4.12
52 53 0.182537 TCGGTGGCTTGATATTGGGG 59.817 55.000 0.00 0.00 0.00 4.96
53 54 0.106719 CGGTGGCTTGATATTGGGGT 60.107 55.000 0.00 0.00 0.00 4.95
54 55 1.142060 CGGTGGCTTGATATTGGGGTA 59.858 52.381 0.00 0.00 0.00 3.69
55 56 2.810400 CGGTGGCTTGATATTGGGGTAG 60.810 54.545 0.00 0.00 0.00 3.18
56 57 2.174854 GGTGGCTTGATATTGGGGTAGT 59.825 50.000 0.00 0.00 0.00 2.73
57 58 3.393278 GGTGGCTTGATATTGGGGTAGTA 59.607 47.826 0.00 0.00 0.00 1.82
58 59 4.505039 GGTGGCTTGATATTGGGGTAGTAG 60.505 50.000 0.00 0.00 0.00 2.57
59 60 3.650942 TGGCTTGATATTGGGGTAGTAGG 59.349 47.826 0.00 0.00 0.00 3.18
60 61 3.651423 GGCTTGATATTGGGGTAGTAGGT 59.349 47.826 0.00 0.00 0.00 3.08
61 62 4.104261 GGCTTGATATTGGGGTAGTAGGTT 59.896 45.833 0.00 0.00 0.00 3.50
62 63 5.063880 GCTTGATATTGGGGTAGTAGGTTG 58.936 45.833 0.00 0.00 0.00 3.77
63 64 5.621193 CTTGATATTGGGGTAGTAGGTTGG 58.379 45.833 0.00 0.00 0.00 3.77
64 65 3.977999 TGATATTGGGGTAGTAGGTTGGG 59.022 47.826 0.00 0.00 0.00 4.12
65 66 0.924090 ATTGGGGTAGTAGGTTGGGC 59.076 55.000 0.00 0.00 0.00 5.36
66 67 1.209523 TTGGGGTAGTAGGTTGGGCC 61.210 60.000 0.00 0.00 37.58 5.80
67 68 2.738938 GGGGTAGTAGGTTGGGCCG 61.739 68.421 0.00 0.00 43.70 6.13
68 69 1.991722 GGGTAGTAGGTTGGGCCGT 60.992 63.158 0.00 0.00 43.70 5.68
69 70 0.687427 GGGTAGTAGGTTGGGCCGTA 60.687 60.000 0.00 0.00 43.70 4.02
70 71 1.194218 GGTAGTAGGTTGGGCCGTAA 58.806 55.000 0.00 0.00 43.70 3.18
71 72 1.134699 GGTAGTAGGTTGGGCCGTAAC 60.135 57.143 11.86 11.86 43.70 2.50
72 73 1.550072 GTAGTAGGTTGGGCCGTAACA 59.450 52.381 19.37 0.00 43.70 2.41
73 74 0.611714 AGTAGGTTGGGCCGTAACAG 59.388 55.000 19.37 0.00 43.70 3.16
74 75 0.392060 GTAGGTTGGGCCGTAACAGG 60.392 60.000 19.37 0.00 43.70 4.00
75 76 0.544833 TAGGTTGGGCCGTAACAGGA 60.545 55.000 19.37 5.01 43.70 3.86
76 77 1.073548 GGTTGGGCCGTAACAGGAA 59.926 57.895 19.37 0.00 0.00 3.36
77 78 1.239296 GGTTGGGCCGTAACAGGAAC 61.239 60.000 19.37 0.32 0.00 3.62
78 79 0.250597 GTTGGGCCGTAACAGGAACT 60.251 55.000 14.58 0.00 43.88 3.01
79 80 1.002315 GTTGGGCCGTAACAGGAACTA 59.998 52.381 14.58 0.00 36.02 2.24
80 81 1.350071 TGGGCCGTAACAGGAACTAA 58.650 50.000 0.00 0.00 36.02 2.24
81 82 1.910671 TGGGCCGTAACAGGAACTAAT 59.089 47.619 0.00 0.00 36.02 1.73
82 83 3.106054 TGGGCCGTAACAGGAACTAATA 58.894 45.455 0.00 0.00 36.02 0.98
83 84 3.712733 TGGGCCGTAACAGGAACTAATAT 59.287 43.478 0.00 0.00 36.02 1.28
84 85 4.202284 TGGGCCGTAACAGGAACTAATATC 60.202 45.833 0.00 0.00 36.02 1.63
85 86 3.985925 GGCCGTAACAGGAACTAATATCG 59.014 47.826 0.00 0.00 36.02 2.92
86 87 3.985925 GCCGTAACAGGAACTAATATCGG 59.014 47.826 0.00 0.00 36.02 4.18
87 88 4.500375 GCCGTAACAGGAACTAATATCGGT 60.500 45.833 0.00 0.00 36.02 4.69
88 89 5.594926 CCGTAACAGGAACTAATATCGGTT 58.405 41.667 0.00 0.00 36.02 4.44
89 90 5.461078 CCGTAACAGGAACTAATATCGGTTG 59.539 44.000 0.00 0.00 36.02 3.77
90 91 5.461078 CGTAACAGGAACTAATATCGGTTGG 59.539 44.000 0.00 0.00 36.02 3.77
91 92 5.431179 AACAGGAACTAATATCGGTTGGT 57.569 39.130 0.00 0.00 36.02 3.67
337 338 3.894782 TCGTGAATGAATGTTGTGTGG 57.105 42.857 0.00 0.00 0.00 4.17
346 347 5.895636 TGAATGTTGTGTGGGAATACATC 57.104 39.130 0.00 0.00 32.43 3.06
348 349 5.772169 TGAATGTTGTGTGGGAATACATCAA 59.228 36.000 0.00 0.00 32.27 2.57
350 351 5.446143 TGTTGTGTGGGAATACATCAAAC 57.554 39.130 0.00 0.00 32.43 2.93
365 367 4.898861 ACATCAAACATTACACCAACCCTT 59.101 37.500 0.00 0.00 0.00 3.95
368 370 5.942961 TCAAACATTACACCAACCCTTCTA 58.057 37.500 0.00 0.00 0.00 2.10
372 374 3.389925 TTACACCAACCCTTCTACACG 57.610 47.619 0.00 0.00 0.00 4.49
375 377 2.036346 ACACCAACCCTTCTACACGTAC 59.964 50.000 0.00 0.00 0.00 3.67
378 380 2.235402 CCAACCCTTCTACACGTACCAT 59.765 50.000 0.00 0.00 0.00 3.55
387 389 7.497909 CCCTTCTACACGTACCATCATATTTTT 59.502 37.037 0.00 0.00 0.00 1.94
389 391 8.428186 TTCTACACGTACCATCATATTTTTCC 57.572 34.615 0.00 0.00 0.00 3.13
390 392 7.557724 TCTACACGTACCATCATATTTTTCCA 58.442 34.615 0.00 0.00 0.00 3.53
401 403 6.060028 TCATATTTTTCCATAGCGTGCTTC 57.940 37.500 0.00 0.00 0.00 3.86
428 430 4.704965 AGGTGTCCTTAGAGTTTCAACAC 58.295 43.478 0.00 0.00 35.86 3.32
445 447 4.083003 TCAACACAAACTTTCTGGACACAC 60.083 41.667 0.00 0.00 0.00 3.82
455 457 3.649986 GGACACACTGTGCGCACC 61.650 66.667 35.72 18.99 36.98 5.01
456 458 3.649986 GACACACTGTGCGCACCC 61.650 66.667 35.72 14.86 36.98 4.61
457 459 4.175337 ACACACTGTGCGCACCCT 62.175 61.111 35.72 19.04 36.98 4.34
458 460 2.030412 CACACTGTGCGCACCCTA 59.970 61.111 35.72 18.10 0.00 3.53
571 576 3.200593 GGCGCTACTCGACCGAGA 61.201 66.667 24.03 8.49 44.53 4.04
603 608 3.173965 ACGAAAAAGGATGGAGGAGAGA 58.826 45.455 0.00 0.00 0.00 3.10
605 610 3.540617 GAAAAAGGATGGAGGAGAGAGC 58.459 50.000 0.00 0.00 0.00 4.09
609 614 1.659794 GATGGAGGAGAGAGCGAGC 59.340 63.158 0.00 0.00 0.00 5.03
685 702 0.033366 AAAACAATTCCTGCGGTGGC 59.967 50.000 0.00 0.00 40.52 5.01
686 703 1.815817 AAACAATTCCTGCGGTGGCC 61.816 55.000 0.00 0.00 38.85 5.36
795 813 3.103007 CACCCTCAACGAAAACGTTTTC 58.897 45.455 33.75 33.75 42.30 2.29
855 883 0.529378 CGGTATCGGGTATAGCCACC 59.471 60.000 20.55 17.87 39.65 4.61
917 945 2.577059 TGGTAGCACCGCACTAGC 59.423 61.111 0.00 0.00 42.58 3.42
1127 1179 1.594833 GGGCCCCCGTTTGAATTTC 59.405 57.895 12.23 0.00 0.00 2.17
1128 1180 0.902984 GGGCCCCCGTTTGAATTTCT 60.903 55.000 12.23 0.00 0.00 2.52
1130 1182 1.337728 GGCCCCCGTTTGAATTTCTTG 60.338 52.381 0.00 0.00 0.00 3.02
1154 1206 4.117661 GTTCGCTCGAGCCGTCCT 62.118 66.667 30.66 0.00 37.91 3.85
1176 1228 5.355350 CCTCTTGACTCTCTCTCTCTCTTTC 59.645 48.000 0.00 0.00 0.00 2.62
1179 1231 3.591527 TGACTCTCTCTCTCTCTTTCCCT 59.408 47.826 0.00 0.00 0.00 4.20
1180 1232 3.947834 GACTCTCTCTCTCTCTTTCCCTG 59.052 52.174 0.00 0.00 0.00 4.45
1181 1233 2.689983 CTCTCTCTCTCTCTTTCCCTGC 59.310 54.545 0.00 0.00 0.00 4.85
1204 1269 3.083997 AGGGTGGTCTCGATGGCC 61.084 66.667 0.00 0.00 41.87 5.36
1244 1309 1.743252 GCCAAGAAGGTGAGCGAGG 60.743 63.158 0.00 0.00 40.61 4.63
1287 1358 3.339141 GCTCCAAATCTCCTTTTCGAGT 58.661 45.455 0.00 0.00 0.00 4.18
1455 1526 4.093998 CAGCAGTGTCTTAGCGAATTGAAT 59.906 41.667 0.00 0.00 0.00 2.57
1459 1530 3.689649 GTGTCTTAGCGAATTGAATGGGT 59.310 43.478 0.00 0.00 0.00 4.51
1517 1588 5.618561 CCAAAACTAGATACGTGCTTGTTC 58.381 41.667 15.89 0.00 31.79 3.18
1522 1593 2.527100 AGATACGTGCTTGTTCGTAGC 58.473 47.619 0.00 5.13 45.18 3.58
1532 1603 1.860676 TGTTCGTAGCAGTGGTTGTC 58.139 50.000 0.00 0.00 0.00 3.18
1555 1626 3.129638 GCTGTTTGTACTGGTGGTTTTGA 59.870 43.478 0.00 0.00 0.00 2.69
1556 1627 4.202111 GCTGTTTGTACTGGTGGTTTTGAT 60.202 41.667 0.00 0.00 0.00 2.57
1557 1628 5.508200 TGTTTGTACTGGTGGTTTTGATC 57.492 39.130 0.00 0.00 0.00 2.92
1558 1629 5.197451 TGTTTGTACTGGTGGTTTTGATCT 58.803 37.500 0.00 0.00 0.00 2.75
1559 1630 6.358178 TGTTTGTACTGGTGGTTTTGATCTA 58.642 36.000 0.00 0.00 0.00 1.98
1560 1631 7.001674 TGTTTGTACTGGTGGTTTTGATCTAT 58.998 34.615 0.00 0.00 0.00 1.98
1561 1632 7.174253 TGTTTGTACTGGTGGTTTTGATCTATC 59.826 37.037 0.00 0.00 0.00 2.08
1683 1754 0.107752 GCAGAAGCAGAGGGAAGAGG 60.108 60.000 0.00 0.00 41.58 3.69
1739 1810 3.075134 AGGGGAAACTGCTTGAGAAAGAT 59.925 43.478 0.00 0.00 0.00 2.40
1838 1909 5.106791 CCAGCTTAATGATAAGGAATCGCTG 60.107 44.000 0.00 0.00 40.71 5.18
1860 1931 1.731093 GAGTCTACTGGCTCCGAGC 59.269 63.158 12.27 12.27 41.46 5.03
1958 2030 1.293924 CTGCATAACCAGCTCCTTCG 58.706 55.000 0.00 0.00 0.00 3.79
2006 2078 8.408043 AAAATTTACACCAGTGAAGATGATGA 57.592 30.769 4.48 0.00 0.00 2.92
2007 2079 8.585471 AAATTTACACCAGTGAAGATGATGAT 57.415 30.769 4.48 0.00 0.00 2.45
2008 2080 6.990341 TTTACACCAGTGAAGATGATGATG 57.010 37.500 4.48 0.00 0.00 3.07
2009 2081 4.831674 ACACCAGTGAAGATGATGATGA 57.168 40.909 4.48 0.00 0.00 2.92
2010 2082 5.169992 ACACCAGTGAAGATGATGATGAA 57.830 39.130 4.48 0.00 0.00 2.57
2011 2083 5.183969 ACACCAGTGAAGATGATGATGAAG 58.816 41.667 4.48 0.00 0.00 3.02
2012 2084 4.575236 CACCAGTGAAGATGATGATGAAGG 59.425 45.833 0.00 0.00 0.00 3.46
2013 2085 4.135306 CCAGTGAAGATGATGATGAAGGG 58.865 47.826 0.00 0.00 0.00 3.95
2014 2086 4.135306 CAGTGAAGATGATGATGAAGGGG 58.865 47.826 0.00 0.00 0.00 4.79
2015 2087 4.042884 AGTGAAGATGATGATGAAGGGGA 58.957 43.478 0.00 0.00 0.00 4.81
2016 2088 4.102838 AGTGAAGATGATGATGAAGGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
2017 2089 3.181447 TGAAGATGATGATGAAGGGGAGC 60.181 47.826 0.00 0.00 0.00 4.70
2018 2090 1.704070 AGATGATGATGAAGGGGAGCC 59.296 52.381 0.00 0.00 0.00 4.70
2019 2091 1.704070 GATGATGATGAAGGGGAGCCT 59.296 52.381 0.00 0.00 0.00 4.58
2020 2092 1.600058 TGATGATGAAGGGGAGCCTT 58.400 50.000 0.00 0.00 0.00 4.35
2021 2093 1.213678 TGATGATGAAGGGGAGCCTTG 59.786 52.381 0.00 0.00 0.00 3.61
2022 2094 0.554792 ATGATGAAGGGGAGCCTTGG 59.445 55.000 0.00 0.00 0.00 3.61
2023 2095 1.454663 GATGAAGGGGAGCCTTGGC 60.455 63.158 2.97 2.97 0.00 4.52
2024 2096 3.350031 ATGAAGGGGAGCCTTGGCG 62.350 63.158 5.95 0.00 0.00 5.69
2032 2104 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2033 2105 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2034 2106 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2035 2107 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2036 2108 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2037 2109 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2038 2110 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2043 2115 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2044 2116 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2045 2117 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2046 2118 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2047 2119 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2048 2120 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2049 2121 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2050 2122 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2051 2123 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2052 2124 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2053 2125 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2054 2126 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2055 2127 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2056 2128 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2057 2129 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2069 2141 2.566833 CCATGAGGTCACAGGTTCAA 57.433 50.000 0.00 0.00 0.00 2.69
2070 2142 2.430465 CCATGAGGTCACAGGTTCAAG 58.570 52.381 0.00 0.00 0.00 3.02
2071 2143 2.224621 CCATGAGGTCACAGGTTCAAGT 60.225 50.000 0.00 0.00 0.00 3.16
2072 2144 2.910688 TGAGGTCACAGGTTCAAGTC 57.089 50.000 0.00 0.00 0.00 3.01
2073 2145 1.416401 TGAGGTCACAGGTTCAAGTCC 59.584 52.381 0.00 0.00 0.00 3.85
2074 2146 1.694696 GAGGTCACAGGTTCAAGTCCT 59.305 52.381 0.00 0.00 35.45 3.85
2081 2153 2.930950 CAGGTTCAAGTCCTGGAAACA 58.069 47.619 0.00 0.00 46.03 2.83
2092 2164 3.025924 TGGAAACAGCCTCTTGCAG 57.974 52.632 0.00 0.00 44.83 4.41
2093 2165 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
2094 2166 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
2095 2167 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
2096 2168 2.560105 GGAAACAGCCTCTTGCAGAAAT 59.440 45.455 0.00 0.00 44.83 2.17
2097 2169 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
2098 2170 2.283145 ACAGCCTCTTGCAGAAATGT 57.717 45.000 0.00 0.00 44.83 2.71
2099 2171 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
2100 2172 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
2101 2173 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
2102 2174 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
2103 2175 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
2104 2176 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
2105 2177 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
2106 2178 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
2107 2179 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
2108 2180 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
2109 2181 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
2110 2182 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
2111 2183 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2112 2184 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2113 2185 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2114 2186 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2115 2187 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2116 2188 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
2117 2189 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
2118 2190 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
2119 2191 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
2120 2192 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
2121 2193 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
2122 2194 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
2123 2195 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
2124 2196 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
2125 2197 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
2126 2198 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
2127 2199 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
2128 2200 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
2129 2201 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
2130 2202 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
2131 2203 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
2132 2204 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
2137 2209 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2138 2210 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2139 2211 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2140 2212 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2141 2213 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2142 2214 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2143 2215 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2144 2216 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2145 2217 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2146 2218 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
2147 2219 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
2148 2220 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
2149 2221 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
2150 2222 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
2151 2223 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2152 2224 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2153 2225 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2154 2226 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2155 2227 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2156 2228 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2177 2249 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
2178 2250 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
2179 2251 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
2180 2252 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
2181 2253 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
2182 2254 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
2183 2255 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
2184 2256 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
2185 2257 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
2190 2262 2.203684 CACTGGGGCTGCCCTTTT 60.204 61.111 34.99 17.53 44.66 2.27
2191 2263 1.076549 CACTGGGGCTGCCCTTTTA 59.923 57.895 34.99 18.57 44.66 1.52
2192 2264 0.541764 CACTGGGGCTGCCCTTTTAA 60.542 55.000 34.99 15.77 44.66 1.52
2193 2265 0.413434 ACTGGGGCTGCCCTTTTAAT 59.587 50.000 34.99 13.71 44.66 1.40
2194 2266 1.643811 ACTGGGGCTGCCCTTTTAATA 59.356 47.619 34.99 13.05 44.66 0.98
2195 2267 2.247372 ACTGGGGCTGCCCTTTTAATAT 59.753 45.455 34.99 11.15 44.66 1.28
2196 2268 3.465588 ACTGGGGCTGCCCTTTTAATATA 59.534 43.478 34.99 10.84 44.66 0.86
2197 2269 4.082125 CTGGGGCTGCCCTTTTAATATAG 58.918 47.826 34.99 15.65 44.66 1.31
2198 2270 2.826128 GGGGCTGCCCTTTTAATATAGC 59.174 50.000 34.99 11.81 44.66 2.97
2199 2271 2.826128 GGGCTGCCCTTTTAATATAGCC 59.174 50.000 30.42 2.87 46.37 3.93
2200 2272 3.500471 GGGCTGCCCTTTTAATATAGCCT 60.500 47.826 30.42 0.00 46.33 4.58
2201 2273 4.263771 GGGCTGCCCTTTTAATATAGCCTA 60.264 45.833 30.42 0.00 46.33 3.93
2202 2274 4.700692 GGCTGCCCTTTTAATATAGCCTAC 59.299 45.833 7.66 0.00 44.33 3.18
2203 2275 4.700692 GCTGCCCTTTTAATATAGCCTACC 59.299 45.833 0.00 0.00 0.00 3.18
2204 2276 5.251182 TGCCCTTTTAATATAGCCTACCC 57.749 43.478 0.00 0.00 0.00 3.69
2205 2277 4.043686 TGCCCTTTTAATATAGCCTACCCC 59.956 45.833 0.00 0.00 0.00 4.95
2206 2278 4.043686 GCCCTTTTAATATAGCCTACCCCA 59.956 45.833 0.00 0.00 0.00 4.96
2207 2279 5.458508 GCCCTTTTAATATAGCCTACCCCAA 60.459 44.000 0.00 0.00 0.00 4.12
2208 2280 6.008331 CCCTTTTAATATAGCCTACCCCAAC 58.992 44.000 0.00 0.00 0.00 3.77
2209 2281 6.183361 CCCTTTTAATATAGCCTACCCCAACT 60.183 42.308 0.00 0.00 0.00 3.16
2210 2282 7.295340 CCTTTTAATATAGCCTACCCCAACTT 58.705 38.462 0.00 0.00 0.00 2.66
2211 2283 7.230712 CCTTTTAATATAGCCTACCCCAACTTG 59.769 40.741 0.00 0.00 0.00 3.16
2212 2284 6.835029 TTAATATAGCCTACCCCAACTTGT 57.165 37.500 0.00 0.00 0.00 3.16
2213 2285 5.727243 AATATAGCCTACCCCAACTTGTT 57.273 39.130 0.00 0.00 0.00 2.83
2214 2286 5.727243 ATATAGCCTACCCCAACTTGTTT 57.273 39.130 0.00 0.00 0.00 2.83
2215 2287 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
2226 2298 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
2227 2299 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
2228 2300 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
2229 2301 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
2230 2302 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
2231 2303 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
2232 2304 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
2233 2305 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
2234 2306 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
2235 2307 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
2236 2308 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
2237 2309 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
2238 2310 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
2239 2311 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
2240 2312 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
2241 2313 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
2242 2314 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
2243 2315 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
2244 2316 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
2245 2317 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
2246 2318 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
2247 2319 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
2248 2320 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
2249 2321 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
2250 2322 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
2251 2323 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2252 2324 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2253 2325 6.040247 TGTTGTTGTTGTTGTTGTTGTTGTA 58.960 32.000 0.00 0.00 0.00 2.41
2254 2326 6.199154 TGTTGTTGTTGTTGTTGTTGTTGTAG 59.801 34.615 0.00 0.00 0.00 2.74
2255 2327 5.833082 TGTTGTTGTTGTTGTTGTTGTAGT 58.167 33.333 0.00 0.00 0.00 2.73
2256 2328 5.687730 TGTTGTTGTTGTTGTTGTTGTAGTG 59.312 36.000 0.00 0.00 0.00 2.74
2257 2329 5.690997 TGTTGTTGTTGTTGTTGTAGTGA 57.309 34.783 0.00 0.00 0.00 3.41
2258 2330 6.073327 TGTTGTTGTTGTTGTTGTAGTGAA 57.927 33.333 0.00 0.00 0.00 3.18
2503 2576 6.484643 TGATTGAACTGGACTGAAGAAAGAAG 59.515 38.462 0.00 0.00 0.00 2.85
2709 2788 5.117592 GTGTTTCAGTGCATGTTAAAGATGC 59.882 40.000 11.98 11.98 45.45 3.91
2816 2897 5.263599 TCCTCAATATGTTTCAGTGCCATT 58.736 37.500 0.00 0.00 0.00 3.16
2895 2988 3.883489 AGAGTAAAAAGGCCAACACAGTC 59.117 43.478 5.01 0.00 0.00 3.51
2992 3086 9.838975 TTGTATTCATGCTTGTTTATGTTACAG 57.161 29.630 0.00 0.00 31.95 2.74
3014 3108 7.453393 ACAGGAGACTTCTATGTTTTTCATCA 58.547 34.615 0.00 0.00 40.21 3.07
3019 3113 9.424319 GAGACTTCTATGTTTTTCATCACTGTA 57.576 33.333 0.00 0.00 37.91 2.74
3229 3323 6.656902 TCTATGGATGTTGAAATCTCTGCTT 58.343 36.000 0.00 0.00 0.00 3.91
3269 3363 3.963428 AATAGCAGAGAACAACCGAGT 57.037 42.857 0.00 0.00 0.00 4.18
3302 3396 3.766591 ACAGAGAGACCTGACGATTCATT 59.233 43.478 0.00 0.00 37.59 2.57
3318 3412 3.913548 TCATTGTTGGAATGTGAACCG 57.086 42.857 0.00 0.00 0.00 4.44
3356 3450 3.264193 AGCTCATGTCCTGTTACATTCCA 59.736 43.478 0.00 0.00 38.01 3.53
3549 3644 2.158696 GGAGCAGGAAATGTCAGCCTAT 60.159 50.000 0.00 0.00 0.00 2.57
3786 3882 2.755650 CCACTGGGTCTTATATCGCAC 58.244 52.381 0.00 0.00 0.00 5.34
3801 3897 1.210155 GCACAGGATCCGTGTTTGC 59.790 57.895 26.56 18.71 36.71 3.68
3970 4069 6.039493 TGGACGACCTAGAGATTATTGTTCTC 59.961 42.308 5.33 0.00 37.49 2.87
4020 4119 4.843220 ATGTTCTCAAACTTTCAGGCTG 57.157 40.909 8.58 8.58 36.30 4.85
4065 4164 6.649973 TGCATGGAGTTTGTGAATTTTATTGG 59.350 34.615 0.00 0.00 0.00 3.16
4120 4219 1.496429 AGATTTAGCCATGGACAGGGG 59.504 52.381 18.40 0.00 31.86 4.79
4123 4222 0.844661 TTAGCCATGGACAGGGGTGT 60.845 55.000 18.40 0.00 43.36 4.16
4139 4238 3.453353 GGGGTGTGTGGAAGTTAGCTATA 59.547 47.826 0.00 0.00 0.00 1.31
4140 4239 4.439968 GGGTGTGTGGAAGTTAGCTATAC 58.560 47.826 0.00 0.00 0.00 1.47
4141 4240 4.439968 GGTGTGTGGAAGTTAGCTATACC 58.560 47.826 0.00 0.00 0.00 2.73
4142 4241 4.439968 GTGTGTGGAAGTTAGCTATACCC 58.560 47.826 0.00 0.00 0.00 3.69
4194 4293 7.741554 ATCTTATGGGTTTCAACTCTAGTCT 57.258 36.000 0.00 0.00 0.00 3.24
4196 4295 8.064336 TCTTATGGGTTTCAACTCTAGTCTAC 57.936 38.462 0.00 0.00 0.00 2.59
4233 4332 2.887337 CCGAAGGCTTTGTTGTTGTTT 58.113 42.857 13.34 0.00 46.14 2.83
4235 4334 3.305897 CCGAAGGCTTTGTTGTTGTTTTC 59.694 43.478 13.34 0.00 46.14 2.29
4238 4337 3.507786 AGGCTTTGTTGTTGTTTTCGTC 58.492 40.909 0.00 0.00 0.00 4.20
4239 4338 2.601314 GGCTTTGTTGTTGTTTTCGTCC 59.399 45.455 0.00 0.00 0.00 4.79
4259 4358 5.404066 CGTCCTTGTTGTTTTGTTGTTTTCT 59.596 36.000 0.00 0.00 0.00 2.52
4278 4377 9.352784 TGTTTTCTTGTATGTTCTCAAACTTTG 57.647 29.630 0.00 0.00 36.30 2.77
4292 4391 4.959210 TCAAACTTTGAGGGGATTGTTTGA 59.041 37.500 12.94 12.94 45.75 2.69
4302 4401 2.035704 GGGATTGTTTGACATGTGCACA 59.964 45.455 24.08 24.08 0.00 4.57
4310 4409 2.642427 TGACATGTGCACAGAGTTTGT 58.358 42.857 25.84 22.65 41.94 2.83
4345 4444 7.095060 GCAGATACATTTGAGTTTGTGAGAGAA 60.095 37.037 0.00 0.00 0.00 2.87
4346 4445 8.777413 CAGATACATTTGAGTTTGTGAGAGAAA 58.223 33.333 0.00 0.00 0.00 2.52
4371 4470 2.766828 ACAGGAGGGTAATAGCTCACAC 59.233 50.000 0.00 0.00 0.00 3.82
4388 4487 8.478775 AGCTCACACAACATAAGTATATCCTA 57.521 34.615 0.00 0.00 0.00 2.94
4397 4496 5.487845 ACATAAGTATATCCTAGCAACCCCC 59.512 44.000 0.00 0.00 0.00 5.40
4422 4521 5.349817 GCGTAGGCGTAGATCAACTATAGTA 59.650 44.000 5.65 0.00 40.81 1.82
4423 4522 6.128445 GCGTAGGCGTAGATCAACTATAGTAA 60.128 42.308 5.65 0.00 40.81 2.24
4426 4525 7.159322 AGGCGTAGATCAACTATAGTAATGG 57.841 40.000 5.65 0.00 33.39 3.16
4575 4677 1.056700 CGGGATTGGGAGGAGTCCAT 61.057 60.000 12.86 0.00 46.07 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.068954 CAAGAAAAGACAAGGCGAGCC 60.069 52.381 5.89 5.89 0.00 4.70
1 2 1.068954 CCAAGAAAAGACAAGGCGAGC 60.069 52.381 0.00 0.00 0.00 5.03
2 3 1.068954 GCCAAGAAAAGACAAGGCGAG 60.069 52.381 0.00 0.00 31.88 5.03
3 4 0.951558 GCCAAGAAAAGACAAGGCGA 59.048 50.000 0.00 0.00 31.88 5.54
4 5 0.039165 GGCCAAGAAAAGACAAGGCG 60.039 55.000 0.00 0.00 42.89 5.52
5 6 1.332195 AGGCCAAGAAAAGACAAGGC 58.668 50.000 5.01 0.00 41.29 4.35
6 7 2.036346 CCAAGGCCAAGAAAAGACAAGG 59.964 50.000 5.01 0.00 0.00 3.61
7 8 2.695147 ACCAAGGCCAAGAAAAGACAAG 59.305 45.455 5.01 0.00 0.00 3.16
8 9 2.693074 GACCAAGGCCAAGAAAAGACAA 59.307 45.455 5.01 0.00 0.00 3.18
9 10 2.306847 GACCAAGGCCAAGAAAAGACA 58.693 47.619 5.01 0.00 0.00 3.41
10 11 1.613925 GGACCAAGGCCAAGAAAAGAC 59.386 52.381 5.01 0.00 0.00 3.01
11 12 1.480498 GGGACCAAGGCCAAGAAAAGA 60.480 52.381 5.01 0.00 0.00 2.52
12 13 0.969149 GGGACCAAGGCCAAGAAAAG 59.031 55.000 5.01 0.00 0.00 2.27
13 14 3.141409 GGGACCAAGGCCAAGAAAA 57.859 52.632 5.01 0.00 0.00 2.29
14 15 4.943373 GGGACCAAGGCCAAGAAA 57.057 55.556 5.01 0.00 0.00 2.52
27 28 1.335132 TATCAAGCCACCGAGGGGAC 61.335 60.000 0.00 0.00 38.09 4.46
28 29 0.399949 ATATCAAGCCACCGAGGGGA 60.400 55.000 0.00 0.00 38.09 4.81
29 30 0.474184 AATATCAAGCCACCGAGGGG 59.526 55.000 0.00 0.00 38.09 4.79
30 31 1.597742 CAATATCAAGCCACCGAGGG 58.402 55.000 0.00 0.00 38.09 4.30
31 32 1.597742 CCAATATCAAGCCACCGAGG 58.402 55.000 0.00 0.00 41.84 4.63
32 33 1.597742 CCCAATATCAAGCCACCGAG 58.402 55.000 0.00 0.00 0.00 4.63
33 34 0.182537 CCCCAATATCAAGCCACCGA 59.817 55.000 0.00 0.00 0.00 4.69
34 35 0.106719 ACCCCAATATCAAGCCACCG 60.107 55.000 0.00 0.00 0.00 4.94
35 36 2.174854 ACTACCCCAATATCAAGCCACC 59.825 50.000 0.00 0.00 0.00 4.61
36 37 3.577805 ACTACCCCAATATCAAGCCAC 57.422 47.619 0.00 0.00 0.00 5.01
37 38 3.650942 CCTACTACCCCAATATCAAGCCA 59.349 47.826 0.00 0.00 0.00 4.75
38 39 3.651423 ACCTACTACCCCAATATCAAGCC 59.349 47.826 0.00 0.00 0.00 4.35
39 40 4.976540 ACCTACTACCCCAATATCAAGC 57.023 45.455 0.00 0.00 0.00 4.01
40 41 5.456186 CCCAACCTACTACCCCAATATCAAG 60.456 48.000 0.00 0.00 0.00 3.02
41 42 4.414182 CCCAACCTACTACCCCAATATCAA 59.586 45.833 0.00 0.00 0.00 2.57
42 43 3.977999 CCCAACCTACTACCCCAATATCA 59.022 47.826 0.00 0.00 0.00 2.15
43 44 3.244805 GCCCAACCTACTACCCCAATATC 60.245 52.174 0.00 0.00 0.00 1.63
44 45 2.714793 GCCCAACCTACTACCCCAATAT 59.285 50.000 0.00 0.00 0.00 1.28
45 46 2.129363 GCCCAACCTACTACCCCAATA 58.871 52.381 0.00 0.00 0.00 1.90
46 47 0.924090 GCCCAACCTACTACCCCAAT 59.076 55.000 0.00 0.00 0.00 3.16
47 48 1.209523 GGCCCAACCTACTACCCCAA 61.210 60.000 0.00 0.00 34.51 4.12
48 49 1.617233 GGCCCAACCTACTACCCCA 60.617 63.158 0.00 0.00 34.51 4.96
49 50 2.738938 CGGCCCAACCTACTACCCC 61.739 68.421 0.00 0.00 35.61 4.95
50 51 0.687427 TACGGCCCAACCTACTACCC 60.687 60.000 0.00 0.00 35.61 3.69
51 52 1.134699 GTTACGGCCCAACCTACTACC 60.135 57.143 0.00 0.00 35.61 3.18
52 53 1.550072 TGTTACGGCCCAACCTACTAC 59.450 52.381 11.37 0.00 35.61 2.73
53 54 1.826720 CTGTTACGGCCCAACCTACTA 59.173 52.381 11.37 0.00 35.61 1.82
54 55 0.611714 CTGTTACGGCCCAACCTACT 59.388 55.000 11.37 0.00 35.61 2.57
55 56 0.392060 CCTGTTACGGCCCAACCTAC 60.392 60.000 11.37 0.00 35.61 3.18
56 57 0.544833 TCCTGTTACGGCCCAACCTA 60.545 55.000 11.37 0.00 35.61 3.08
57 58 1.420532 TTCCTGTTACGGCCCAACCT 61.421 55.000 11.37 0.00 35.61 3.50
58 59 1.073548 TTCCTGTTACGGCCCAACC 59.926 57.895 11.37 0.00 0.00 3.77
59 60 0.250597 AGTTCCTGTTACGGCCCAAC 60.251 55.000 0.00 2.04 0.00 3.77
60 61 1.350071 TAGTTCCTGTTACGGCCCAA 58.650 50.000 0.00 0.00 0.00 4.12
61 62 1.350071 TTAGTTCCTGTTACGGCCCA 58.650 50.000 0.00 0.00 0.00 5.36
62 63 2.704464 ATTAGTTCCTGTTACGGCCC 57.296 50.000 0.00 0.00 0.00 5.80
63 64 3.985925 CGATATTAGTTCCTGTTACGGCC 59.014 47.826 0.00 0.00 0.00 6.13
64 65 3.985925 CCGATATTAGTTCCTGTTACGGC 59.014 47.826 0.00 0.00 0.00 5.68
65 66 5.192327 ACCGATATTAGTTCCTGTTACGG 57.808 43.478 0.00 0.00 41.85 4.02
66 67 5.461078 CCAACCGATATTAGTTCCTGTTACG 59.539 44.000 0.00 0.00 0.00 3.18
67 68 6.343703 ACCAACCGATATTAGTTCCTGTTAC 58.656 40.000 0.00 0.00 0.00 2.50
68 69 6.549433 ACCAACCGATATTAGTTCCTGTTA 57.451 37.500 0.00 0.00 0.00 2.41
69 70 5.431179 ACCAACCGATATTAGTTCCTGTT 57.569 39.130 0.00 0.00 0.00 3.16
302 303 1.702957 TCACGATGACCCCTCCTTTTT 59.297 47.619 0.00 0.00 0.00 1.94
303 304 1.358152 TCACGATGACCCCTCCTTTT 58.642 50.000 0.00 0.00 0.00 2.27
304 305 1.358152 TTCACGATGACCCCTCCTTT 58.642 50.000 0.00 0.00 0.00 3.11
305 306 1.210478 CATTCACGATGACCCCTCCTT 59.790 52.381 0.00 0.00 38.03 3.36
306 307 0.833287 CATTCACGATGACCCCTCCT 59.167 55.000 0.00 0.00 38.03 3.69
310 311 2.643551 ACATTCATTCACGATGACCCC 58.356 47.619 0.00 0.00 44.28 4.95
314 315 4.083377 CCACACAACATTCATTCACGATGA 60.083 41.667 0.00 0.00 42.95 2.92
337 338 7.033185 GGTTGGTGTAATGTTTGATGTATTCC 58.967 38.462 0.00 0.00 0.00 3.01
346 347 5.533154 TGTAGAAGGGTTGGTGTAATGTTTG 59.467 40.000 0.00 0.00 0.00 2.93
348 349 5.067954 GTGTAGAAGGGTTGGTGTAATGTT 58.932 41.667 0.00 0.00 0.00 2.71
350 351 3.682858 CGTGTAGAAGGGTTGGTGTAATG 59.317 47.826 0.00 0.00 0.00 1.90
365 367 7.557724 TGGAAAAATATGATGGTACGTGTAGA 58.442 34.615 0.00 0.00 0.00 2.59
368 370 7.041372 GCTATGGAAAAATATGATGGTACGTGT 60.041 37.037 0.00 0.00 0.00 4.49
372 374 7.298122 CACGCTATGGAAAAATATGATGGTAC 58.702 38.462 0.00 0.00 0.00 3.34
375 377 5.048504 AGCACGCTATGGAAAAATATGATGG 60.049 40.000 0.00 0.00 0.00 3.51
378 380 5.277297 CGAAGCACGCTATGGAAAAATATGA 60.277 40.000 0.00 0.00 34.51 2.15
401 403 1.313812 ACTCTAAGGACACCTCGGCG 61.314 60.000 0.00 0.00 30.89 6.46
428 430 3.731867 GCACAGTGTGTCCAGAAAGTTTG 60.732 47.826 23.73 0.00 35.75 2.93
455 457 0.179062 GTCAGCCTCCTGTGCATAGG 60.179 60.000 22.80 22.80 40.09 2.57
456 458 0.829333 AGTCAGCCTCCTGTGCATAG 59.171 55.000 2.99 2.99 40.09 2.23
457 459 1.065926 CAAGTCAGCCTCCTGTGCATA 60.066 52.381 0.00 0.00 40.09 3.14
458 460 0.322277 CAAGTCAGCCTCCTGTGCAT 60.322 55.000 0.00 0.00 40.09 3.96
465 470 1.216710 CTCCGTCAAGTCAGCCTCC 59.783 63.158 0.00 0.00 0.00 4.30
500 505 3.583086 CCGTAATCCTACCCATCCTCAAT 59.417 47.826 0.00 0.00 0.00 2.57
540 545 2.203070 CGCCCATTCTTCTCCCCG 60.203 66.667 0.00 0.00 0.00 5.73
567 572 0.523072 TTCGTTACCCGGTCTTCTCG 59.477 55.000 0.00 0.00 37.11 4.04
571 576 2.104622 TCCTTTTTCGTTACCCGGTCTT 59.895 45.455 0.00 0.00 37.11 3.01
579 584 4.828829 TCTCCTCCATCCTTTTTCGTTAC 58.171 43.478 0.00 0.00 0.00 2.50
661 678 1.139163 CGCAGGAATTGTTTTGTGCC 58.861 50.000 0.00 0.00 0.00 5.01
719 737 2.635443 ATTCCGCCTGGGCAAAACG 61.635 57.895 12.34 0.00 42.06 3.60
795 813 4.082679 TGTTCCGGGATTTATTTGGTTTCG 60.083 41.667 0.00 0.00 0.00 3.46
796 814 5.394224 TGTTCCGGGATTTATTTGGTTTC 57.606 39.130 0.00 0.00 0.00 2.78
800 823 5.815222 GGATTTTGTTCCGGGATTTATTTGG 59.185 40.000 0.00 0.00 0.00 3.28
894 922 1.005037 TGCGGTGCTACCACTTCTG 60.005 57.895 6.21 0.00 41.75 3.02
895 923 1.004918 GTGCGGTGCTACCACTTCT 60.005 57.895 6.21 0.00 41.75 2.85
896 924 0.245539 TAGTGCGGTGCTACCACTTC 59.754 55.000 6.21 0.00 41.75 3.01
1116 1168 2.351350 CCCCGGACAAGAAATTCAAACG 60.351 50.000 0.73 0.00 0.00 3.60
1127 1179 2.434359 GAGCGAACCCCGGACAAG 60.434 66.667 0.73 0.00 39.04 3.16
1128 1180 4.367023 CGAGCGAACCCCGGACAA 62.367 66.667 0.73 0.00 39.04 3.18
1130 1182 4.493747 CTCGAGCGAACCCCGGAC 62.494 72.222 0.73 0.00 39.04 4.79
1153 1205 5.355350 GGAAAGAGAGAGAGAGAGTCAAGAG 59.645 48.000 0.00 0.00 0.00 2.85
1154 1206 5.253330 GGAAAGAGAGAGAGAGAGTCAAGA 58.747 45.833 0.00 0.00 0.00 3.02
1180 1232 4.459089 GAGACCACCCTCCTGCGC 62.459 72.222 0.00 0.00 0.00 6.09
1181 1233 4.135153 CGAGACCACCCTCCTGCG 62.135 72.222 0.00 0.00 0.00 5.18
1244 1309 1.002011 GTCAAGGTCAAGGAGGCCC 60.002 63.158 0.00 0.00 45.84 5.80
1249 1314 2.890766 GCGGGGTCAAGGTCAAGGA 61.891 63.158 0.00 0.00 0.00 3.36
1258 1329 0.035439 GAGATTTGGAGCGGGGTCAA 60.035 55.000 0.00 0.00 0.00 3.18
1287 1358 3.064820 GCGATTCGGAAAGGCAAAAGATA 59.935 43.478 8.34 0.00 0.00 1.98
1382 1453 2.434884 AGGAGCACAATGCCGACG 60.435 61.111 0.00 0.00 46.52 5.12
1415 1486 1.134670 GCTGATGTCCACTACTCCACC 60.135 57.143 0.00 0.00 0.00 4.61
1421 1492 2.232452 AGACACTGCTGATGTCCACTAC 59.768 50.000 16.69 0.00 46.38 2.73
1517 1588 1.372997 AGCGACAACCACTGCTACG 60.373 57.895 0.00 0.00 35.56 3.51
1522 1593 0.732571 ACAAACAGCGACAACCACTG 59.267 50.000 0.00 0.00 37.45 3.66
1532 1603 1.305201 AACCACCAGTACAAACAGCG 58.695 50.000 0.00 0.00 0.00 5.18
1555 1626 7.104290 CAGATGTTGTGGCATAGATGATAGAT 58.896 38.462 0.00 0.00 0.00 1.98
1556 1627 6.461640 CAGATGTTGTGGCATAGATGATAGA 58.538 40.000 0.00 0.00 0.00 1.98
1557 1628 5.121925 GCAGATGTTGTGGCATAGATGATAG 59.878 44.000 0.00 0.00 0.00 2.08
1558 1629 4.999311 GCAGATGTTGTGGCATAGATGATA 59.001 41.667 0.00 0.00 0.00 2.15
1559 1630 3.819337 GCAGATGTTGTGGCATAGATGAT 59.181 43.478 0.00 0.00 0.00 2.45
1560 1631 3.118149 AGCAGATGTTGTGGCATAGATGA 60.118 43.478 0.00 0.00 0.00 2.92
1561 1632 3.211865 AGCAGATGTTGTGGCATAGATG 58.788 45.455 0.00 0.00 0.00 2.90
1721 1792 5.048852 AGCTTCATCTTTCTCAAGCAGTTTC 60.049 40.000 5.38 0.00 43.15 2.78
1739 1810 1.881903 CTGCGGACCTCAGAGCTTCA 61.882 60.000 5.48 0.00 33.54 3.02
1838 1909 1.716826 CGGAGCCAGTAGACTCGACC 61.717 65.000 0.00 0.00 33.55 4.79
1868 1939 2.351726 GCAAGTCCAGTATACCTTTGCG 59.648 50.000 0.00 0.00 0.00 4.85
1999 2071 1.704070 AGGCTCCCCTTCATCATCATC 59.296 52.381 0.00 0.00 38.74 2.92
2000 2072 1.830486 AGGCTCCCCTTCATCATCAT 58.170 50.000 0.00 0.00 38.74 2.45
2001 2073 3.347158 AGGCTCCCCTTCATCATCA 57.653 52.632 0.00 0.00 38.74 3.07
2014 2086 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2015 2087 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2016 2088 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2017 2089 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2018 2090 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2019 2091 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2020 2092 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2021 2093 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2025 2097 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2026 2098 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2027 2099 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2028 2100 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2029 2101 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2030 2102 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2031 2103 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2032 2104 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2033 2105 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2034 2106 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2035 2107 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2036 2108 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2037 2109 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2038 2110 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2039 2111 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2040 2112 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2050 2122 2.224621 ACTTGAACCTGTGACCTCATGG 60.225 50.000 0.00 0.00 39.83 3.66
2051 2123 3.070018 GACTTGAACCTGTGACCTCATG 58.930 50.000 0.00 0.00 0.00 3.07
2052 2124 2.039084 GGACTTGAACCTGTGACCTCAT 59.961 50.000 0.00 0.00 0.00 2.90
2053 2125 1.416401 GGACTTGAACCTGTGACCTCA 59.584 52.381 0.00 0.00 0.00 3.86
2054 2126 1.694696 AGGACTTGAACCTGTGACCTC 59.305 52.381 0.00 0.00 36.30 3.85
2055 2127 1.417890 CAGGACTTGAACCTGTGACCT 59.582 52.381 0.00 0.00 46.71 3.85
2056 2128 1.884235 CAGGACTTGAACCTGTGACC 58.116 55.000 0.00 0.00 46.71 4.02
2062 2134 2.749800 GCTGTTTCCAGGACTTGAACCT 60.750 50.000 0.00 0.00 39.22 3.50
2063 2135 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2064 2136 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2065 2137 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2066 2138 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2067 2139 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2068 2140 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2069 2141 1.072965 CAAGAGGCTGTTTCCAGGACT 59.927 52.381 0.00 0.00 39.22 3.85
2070 2142 1.528129 CAAGAGGCTGTTTCCAGGAC 58.472 55.000 0.00 0.00 39.22 3.85
2071 2143 0.250901 GCAAGAGGCTGTTTCCAGGA 60.251 55.000 0.00 0.00 39.22 3.86
2072 2144 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
2073 2145 0.879765 CTGCAAGAGGCTGTTTCCAG 59.120 55.000 0.00 0.00 45.15 3.86
2074 2146 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
2075 2147 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
2085 2157 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
2086 2158 3.119352 GCCTTTCCCTACATTTCTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
2087 2159 2.825532 GCCTTTCCCTACATTTCTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
2088 2160 2.041620 AGCCTTTCCCTACATTTCTGCA 59.958 45.455 0.00 0.00 0.00 4.41
2089 2161 2.424956 CAGCCTTTCCCTACATTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
2090 2162 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2091 2163 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2092 2164 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2093 2165 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2094 2166 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2095 2167 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2096 2168 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2097 2169 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
2098 2170 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
2099 2171 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
2100 2172 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
2101 2173 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
2102 2174 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
2103 2175 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
2104 2176 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
2105 2177 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
2106 2178 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
2107 2179 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
2108 2180 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
2109 2181 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
2110 2182 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
2111 2183 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
2121 2193 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2122 2194 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2123 2195 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2124 2196 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2125 2197 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2126 2198 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2127 2199 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2128 2200 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
2129 2201 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
2130 2202 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2131 2203 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2132 2204 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2133 2205 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2134 2206 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2135 2207 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2136 2208 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2137 2209 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
2138 2210 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
2139 2211 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
2151 2223 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2154 2226 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2155 2227 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2156 2228 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2157 2229 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2159 2231 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
2160 2232 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
2161 2233 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
2162 2234 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
2163 2235 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
2164 2236 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
2165 2237 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
2166 2238 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
2167 2239 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
2178 2250 2.826128 GGCTATATTAAAAGGGCAGCCC 59.174 50.000 24.90 24.90 45.90 5.19
2179 2251 3.767711 AGGCTATATTAAAAGGGCAGCC 58.232 45.455 1.26 1.26 45.94 4.85
2180 2252 4.700692 GGTAGGCTATATTAAAAGGGCAGC 59.299 45.833 0.00 0.00 0.00 5.25
2181 2253 5.254115 GGGTAGGCTATATTAAAAGGGCAG 58.746 45.833 0.00 0.00 0.00 4.85
2182 2254 4.043686 GGGGTAGGCTATATTAAAAGGGCA 59.956 45.833 0.00 0.00 0.00 5.36
2183 2255 4.043686 TGGGGTAGGCTATATTAAAAGGGC 59.956 45.833 0.00 0.00 0.00 5.19
2184 2256 5.853572 TGGGGTAGGCTATATTAAAAGGG 57.146 43.478 0.00 0.00 0.00 3.95
2185 2257 6.849151 AGTTGGGGTAGGCTATATTAAAAGG 58.151 40.000 0.00 0.00 0.00 3.11
2186 2258 7.778382 ACAAGTTGGGGTAGGCTATATTAAAAG 59.222 37.037 7.96 0.00 0.00 2.27
2187 2259 7.645002 ACAAGTTGGGGTAGGCTATATTAAAA 58.355 34.615 7.96 0.00 0.00 1.52
2188 2260 7.215743 ACAAGTTGGGGTAGGCTATATTAAA 57.784 36.000 7.96 0.00 0.00 1.52
2189 2261 6.835029 ACAAGTTGGGGTAGGCTATATTAA 57.165 37.500 7.96 0.00 0.00 1.40
2190 2262 6.835029 AACAAGTTGGGGTAGGCTATATTA 57.165 37.500 7.96 0.00 0.00 0.98
2191 2263 5.727243 AACAAGTTGGGGTAGGCTATATT 57.273 39.130 7.96 0.00 0.00 1.28
2192 2264 5.445964 CAAACAAGTTGGGGTAGGCTATAT 58.554 41.667 7.96 0.00 33.18 0.86
2193 2265 4.850680 CAAACAAGTTGGGGTAGGCTATA 58.149 43.478 7.96 0.00 33.18 1.31
2194 2266 3.697166 CAAACAAGTTGGGGTAGGCTAT 58.303 45.455 7.96 0.00 33.18 2.97
2195 2267 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
2196 2268 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
2205 2277 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
2206 2278 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
2207 2279 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
2208 2280 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
2209 2281 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
2210 2282 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
2211 2283 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
2212 2284 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
2213 2285 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
2214 2286 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
2215 2287 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
2216 2288 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
2217 2289 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
2218 2290 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
2219 2291 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
2220 2292 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
2221 2293 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
2222 2294 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
2223 2295 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
2224 2296 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
2225 2297 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
2226 2298 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
2227 2299 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
2228 2300 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2229 2301 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2230 2302 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2231 2303 6.199154 CACTACAACAACAACAACAACAACAA 59.801 34.615 0.00 0.00 0.00 2.83
2232 2304 5.687730 CACTACAACAACAACAACAACAACA 59.312 36.000 0.00 0.00 0.00 3.33
2233 2305 5.915758 TCACTACAACAACAACAACAACAAC 59.084 36.000 0.00 0.00 0.00 3.32
2234 2306 6.073327 TCACTACAACAACAACAACAACAA 57.927 33.333 0.00 0.00 0.00 2.83
2235 2307 5.690997 TCACTACAACAACAACAACAACA 57.309 34.783 0.00 0.00 0.00 3.33
2236 2308 6.375377 TCTTCACTACAACAACAACAACAAC 58.625 36.000 0.00 0.00 0.00 3.32
2237 2309 6.561737 TCTTCACTACAACAACAACAACAA 57.438 33.333 0.00 0.00 0.00 2.83
2238 2310 6.372937 TCATCTTCACTACAACAACAACAACA 59.627 34.615 0.00 0.00 0.00 3.33
2239 2311 6.781138 TCATCTTCACTACAACAACAACAAC 58.219 36.000 0.00 0.00 0.00 3.32
2240 2312 6.993786 TCATCTTCACTACAACAACAACAA 57.006 33.333 0.00 0.00 0.00 2.83
2241 2313 6.513230 GCATCATCTTCACTACAACAACAACA 60.513 38.462 0.00 0.00 0.00 3.33
2242 2314 5.853282 GCATCATCTTCACTACAACAACAAC 59.147 40.000 0.00 0.00 0.00 3.32
2243 2315 5.764686 AGCATCATCTTCACTACAACAACAA 59.235 36.000 0.00 0.00 0.00 2.83
2244 2316 5.308014 AGCATCATCTTCACTACAACAACA 58.692 37.500 0.00 0.00 0.00 3.33
2245 2317 5.869753 AGCATCATCTTCACTACAACAAC 57.130 39.130 0.00 0.00 0.00 3.32
2246 2318 6.539826 CCATAGCATCATCTTCACTACAACAA 59.460 38.462 0.00 0.00 0.00 2.83
2247 2319 6.051074 CCATAGCATCATCTTCACTACAACA 58.949 40.000 0.00 0.00 0.00 3.33
2248 2320 5.468072 CCCATAGCATCATCTTCACTACAAC 59.532 44.000 0.00 0.00 0.00 3.32
2249 2321 5.366477 TCCCATAGCATCATCTTCACTACAA 59.634 40.000 0.00 0.00 0.00 2.41
2250 2322 4.901250 TCCCATAGCATCATCTTCACTACA 59.099 41.667 0.00 0.00 0.00 2.74
2251 2323 5.221521 TGTCCCATAGCATCATCTTCACTAC 60.222 44.000 0.00 0.00 0.00 2.73
2252 2324 4.901250 TGTCCCATAGCATCATCTTCACTA 59.099 41.667 0.00 0.00 0.00 2.74
2253 2325 3.713248 TGTCCCATAGCATCATCTTCACT 59.287 43.478 0.00 0.00 0.00 3.41
2254 2326 3.812053 GTGTCCCATAGCATCATCTTCAC 59.188 47.826 0.00 0.00 0.00 3.18
2255 2327 3.713248 AGTGTCCCATAGCATCATCTTCA 59.287 43.478 0.00 0.00 0.00 3.02
2256 2328 4.348863 AGTGTCCCATAGCATCATCTTC 57.651 45.455 0.00 0.00 0.00 2.87
2257 2329 5.545335 TGATAGTGTCCCATAGCATCATCTT 59.455 40.000 0.00 0.00 0.00 2.40
2258 2330 5.089434 TGATAGTGTCCCATAGCATCATCT 58.911 41.667 0.00 0.00 0.00 2.90
2503 2576 3.252701 CCTCAAATCAGCATGTCATAGGC 59.747 47.826 0.00 0.00 37.40 3.93
2809 2890 7.260603 AGACATAAGCATCTTTAAAATGGCAC 58.739 34.615 0.00 0.00 0.00 5.01
2816 2897 8.020819 CGGACAAAAGACATAAGCATCTTTAAA 58.979 33.333 0.00 0.00 42.89 1.52
2895 2988 9.888878 CAGCATATGTCAGTTGAAATATAAAGG 57.111 33.333 4.29 0.00 33.75 3.11
2992 3086 7.389053 ACAGTGATGAAAAACATAGAAGTCTCC 59.611 37.037 0.00 0.00 39.56 3.71
3081 3175 6.357198 CAACAATAACAACAAATCAGCAAGC 58.643 36.000 0.00 0.00 0.00 4.01
3229 3323 7.833682 TGCTATTTTCCTGAATACCTTCATCAA 59.166 33.333 0.00 0.00 40.52 2.57
3253 3347 1.271102 AGAGACTCGGTTGTTCTCTGC 59.729 52.381 0.00 0.00 36.54 4.26
3289 3383 4.156556 ACATTCCAACAATGAATCGTCAGG 59.843 41.667 1.36 0.00 37.14 3.86
3302 3396 1.950909 GAACCGGTTCACATTCCAACA 59.049 47.619 36.67 0.00 39.31 3.33
3549 3644 2.573869 GCTGCTAGAGCCGTGACA 59.426 61.111 0.00 0.00 42.54 3.58
3695 3791 3.691744 CTGCCGAGCCTCACGAGAC 62.692 68.421 0.00 0.00 0.00 3.36
3801 3897 3.008157 CCCAGATCCAAGATGAGAGGATG 59.992 52.174 0.00 0.00 42.03 3.51
3970 4069 3.713858 TTGCAAATGTTCAGACCACTG 57.286 42.857 0.00 0.00 44.66 3.66
4020 4119 3.303263 GCATGTGCATGAAACCAAACAAC 60.303 43.478 15.53 0.00 41.20 3.32
4065 4164 2.009774 CAGGTTGAACCATCGGATGTC 58.990 52.381 17.83 9.06 41.95 3.06
4120 4219 4.439968 GGGTATAGCTAACTTCCACACAC 58.560 47.826 0.00 0.00 0.00 3.82
4123 4222 3.131577 CACGGGTATAGCTAACTTCCACA 59.868 47.826 0.00 0.00 0.00 4.17
4139 4238 0.249398 GTCATGGTTCTAGCACGGGT 59.751 55.000 0.00 0.00 0.00 5.28
4140 4239 0.537188 AGTCATGGTTCTAGCACGGG 59.463 55.000 0.00 0.00 0.00 5.28
4141 4240 2.002586 CAAGTCATGGTTCTAGCACGG 58.997 52.381 0.00 0.00 0.00 4.94
4142 4241 2.002586 CCAAGTCATGGTTCTAGCACG 58.997 52.381 0.00 0.00 44.85 5.34
4166 4265 9.213777 ACTAGAGTTGAAACCCATAAGATATCA 57.786 33.333 5.32 0.00 0.00 2.15
4213 4312 2.577449 AACAACAACAAAGCCTTCGG 57.423 45.000 0.00 0.00 0.00 4.30
4214 4313 3.001168 CGAAAACAACAACAAAGCCTTCG 60.001 43.478 0.00 0.00 0.00 3.79
4233 4332 4.506886 ACAACAAAACAACAAGGACGAA 57.493 36.364 0.00 0.00 0.00 3.85
4235 4334 5.404066 AGAAAACAACAAAACAACAAGGACG 59.596 36.000 0.00 0.00 0.00 4.79
4238 4337 6.953843 ACAAGAAAACAACAAAACAACAAGG 58.046 32.000 0.00 0.00 0.00 3.61
4239 4338 9.527566 CATACAAGAAAACAACAAAACAACAAG 57.472 29.630 0.00 0.00 0.00 3.16
4278 4377 2.094545 GCACATGTCAAACAATCCCCTC 60.095 50.000 0.00 0.00 0.00 4.30
4282 4381 3.004629 TCTGTGCACATGTCAAACAATCC 59.995 43.478 22.00 0.00 0.00 3.01
4292 4391 4.082300 TGAAAACAAACTCTGTGCACATGT 60.082 37.500 22.00 18.26 38.67 3.21
4302 4401 6.767902 TGTATCTGCTTCTGAAAACAAACTCT 59.232 34.615 0.00 0.00 0.00 3.24
4310 4409 7.750229 ACTCAAATGTATCTGCTTCTGAAAA 57.250 32.000 0.00 0.00 0.00 2.29
4345 4444 4.783227 TGAGCTATTACCCTCCTGTTTCTT 59.217 41.667 0.00 0.00 0.00 2.52
4346 4445 4.162509 GTGAGCTATTACCCTCCTGTTTCT 59.837 45.833 0.00 0.00 0.00 2.52
4371 4470 6.879458 GGGGTTGCTAGGATATACTTATGTTG 59.121 42.308 0.00 0.00 0.00 3.33
4410 4509 6.239714 CCAGACTGCCCATTACTATAGTTGAT 60.240 42.308 11.40 3.27 0.00 2.57
4422 4521 0.323178 CTTCTGCCAGACTGCCCATT 60.323 55.000 0.00 0.00 0.00 3.16
4423 4522 1.203441 TCTTCTGCCAGACTGCCCAT 61.203 55.000 0.00 0.00 0.00 4.00
4426 4525 0.036022 AACTCTTCTGCCAGACTGCC 59.964 55.000 0.00 0.00 0.00 4.85
4575 4677 2.489938 CCGAAGAGGTTTGGGATTGA 57.510 50.000 0.00 0.00 33.82 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.