Multiple sequence alignment - TraesCS5B01G249900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G249900 chr5B 100.000 5693 0 0 1 5693 432706606 432712298 0.000000e+00 10514.0
1 TraesCS5B01G249900 chr5B 97.075 718 20 1 4976 5693 363255239 363254523 0.000000e+00 1208.0
2 TraesCS5B01G249900 chr5B 88.467 711 61 14 1 708 197532470 197533162 0.000000e+00 839.0
3 TraesCS5B01G249900 chr5A 98.009 1406 25 2 3249 4651 467742052 467740647 0.000000e+00 2438.0
4 TraesCS5B01G249900 chr5A 96.994 1264 31 3 920 2183 467755341 467754085 0.000000e+00 2117.0
5 TraesCS5B01G249900 chr5A 97.665 771 18 0 2611 3381 467742862 467742092 0.000000e+00 1325.0
6 TraesCS5B01G249900 chr5A 97.765 716 15 1 4978 5693 409318296 409317582 0.000000e+00 1232.0
7 TraesCS5B01G249900 chr5A 99.115 452 3 1 2175 2626 467745298 467744848 0.000000e+00 811.0
8 TraesCS5B01G249900 chr5A 97.119 243 7 0 4663 4905 467735176 467734934 1.480000e-110 411.0
9 TraesCS5B01G249900 chr5A 92.958 142 7 3 3135 3275 277726504 277726643 2.690000e-48 204.0
10 TraesCS5B01G249900 chr2D 84.301 2083 231 59 1032 3051 577628186 577630235 0.000000e+00 1947.0
11 TraesCS5B01G249900 chr2D 83.439 2059 245 44 991 2993 565097989 565100007 0.000000e+00 1825.0
12 TraesCS5B01G249900 chr2D 84.645 1804 216 29 1032 2794 565149349 565147566 0.000000e+00 1740.0
13 TraesCS5B01G249900 chr2D 78.970 1417 174 58 3377 4727 565147090 565145732 0.000000e+00 852.0
14 TraesCS5B01G249900 chr2D 86.526 616 65 12 4207 4810 577630626 577631235 0.000000e+00 662.0
15 TraesCS5B01G249900 chr2D 77.984 863 107 40 3364 4195 565100250 565101060 1.120000e-126 464.0
16 TraesCS5B01G249900 chr2D 81.180 627 66 26 4221 4810 565101060 565101671 1.870000e-124 457.0
17 TraesCS5B01G249900 chr2B 84.034 2092 237 61 1036 3054 694749250 694747183 0.000000e+00 1923.0
18 TraesCS5B01G249900 chr2B 83.979 2091 241 56 1036 3054 694777957 694775889 0.000000e+00 1919.0
19 TraesCS5B01G249900 chr2B 82.596 2103 262 46 950 2993 676764408 676766465 0.000000e+00 1760.0
20 TraesCS5B01G249900 chr2B 84.415 1803 222 28 1032 2794 677017491 677015708 0.000000e+00 1718.0
21 TraesCS5B01G249900 chr2B 82.183 1695 198 52 1437 3054 694699840 694698173 0.000000e+00 1362.0
22 TraesCS5B01G249900 chr2B 86.835 790 89 14 2 783 19164674 19165456 0.000000e+00 869.0
23 TraesCS5B01G249900 chr2B 87.165 522 41 11 2329 2831 694605199 694604685 2.300000e-158 569.0
24 TraesCS5B01G249900 chr2B 85.742 512 62 6 4309 4810 694774263 694773753 1.090000e-146 531.0
25 TraesCS5B01G249900 chr2B 85.352 512 64 6 4309 4810 694745551 694745041 2.350000e-143 520.0
26 TraesCS5B01G249900 chr2B 81.647 583 62 21 4249 4796 676767720 676768292 5.230000e-120 442.0
27 TraesCS5B01G249900 chr2B 81.294 572 67 23 3377 3918 677015232 677014671 1.470000e-115 427.0
28 TraesCS5B01G249900 chr2B 82.974 417 47 8 4399 4810 694695940 694695543 7.020000e-94 355.0
29 TraesCS5B01G249900 chr2B 88.412 233 27 0 4322 4554 694604056 694603824 1.210000e-71 281.0
30 TraesCS5B01G249900 chr2B 80.161 373 46 15 3364 3718 676766792 676767154 2.630000e-63 254.0
31 TraesCS5B01G249900 chr2B 91.716 169 10 4 3130 3298 18927088 18927252 1.230000e-56 231.0
32 TraesCS5B01G249900 chr2B 78.810 269 38 13 320 584 182717253 182717000 4.560000e-36 163.0
33 TraesCS5B01G249900 chr2A 83.767 2076 237 57 1045 3054 715777239 715775198 0.000000e+00 1875.0
34 TraesCS5B01G249900 chr2A 84.248 1841 219 38 997 2794 705590360 705588548 0.000000e+00 1727.0
35 TraesCS5B01G249900 chr2A 84.265 1824 228 25 1076 2866 705539158 705540955 0.000000e+00 1724.0
36 TraesCS5B01G249900 chr2A 76.988 1421 185 70 3377 4732 705588070 705586727 0.000000e+00 682.0
37 TraesCS5B01G249900 chr2A 86.469 606 61 11 4210 4803 715774807 715774211 0.000000e+00 645.0
38 TraesCS5B01G249900 chr2A 80.861 627 68 25 4221 4810 705542273 705542884 4.050000e-121 446.0
39 TraesCS5B01G249900 chr2A 81.164 292 47 6 301 586 731083880 731084169 1.600000e-55 228.0
40 TraesCS5B01G249900 chr2A 89.474 152 14 2 3147 3298 606829596 606829745 2.090000e-44 191.0
41 TraesCS5B01G249900 chr2A 94.444 36 1 1 985 1019 705539091 705539126 3.000000e-03 54.7
42 TraesCS5B01G249900 chr5D 98.607 718 9 1 4976 5693 315198768 315198052 0.000000e+00 1269.0
43 TraesCS5B01G249900 chr5D 96.000 125 3 2 3145 3269 325957613 325957491 9.670000e-48 202.0
44 TraesCS5B01G249900 chr1B 90.284 916 77 12 1 913 44064182 44063276 0.000000e+00 1188.0
45 TraesCS5B01G249900 chr1B 88.742 151 14 3 3148 3298 256197514 256197367 1.260000e-41 182.0
46 TraesCS5B01G249900 chr4A 88.235 935 82 18 1 919 547303826 547304748 0.000000e+00 1092.0
47 TraesCS5B01G249900 chr4A 92.022 539 38 5 1 539 698559667 698560200 0.000000e+00 752.0
48 TraesCS5B01G249900 chr7B 88.370 920 66 13 4 919 79103034 79102152 0.000000e+00 1068.0
49 TraesCS5B01G249900 chr7B 84.270 89 13 1 826 913 735817772 735817860 1.020000e-12 86.1
50 TraesCS5B01G249900 chr7D 85.253 929 108 19 1 913 53745974 53746889 0.000000e+00 929.0
51 TraesCS5B01G249900 chr7A 91.791 670 51 4 211 878 30913925 30914592 0.000000e+00 929.0
52 TraesCS5B01G249900 chr6D 82.627 944 118 33 1 919 442155670 442154748 0.000000e+00 793.0
53 TraesCS5B01G249900 chr6D 91.620 179 12 3 3130 3307 126435292 126435116 1.580000e-60 244.0
54 TraesCS5B01G249900 chr6D 91.045 67 6 0 830 896 322986186 322986252 2.180000e-14 91.6
55 TraesCS5B01G249900 chr3A 90.698 172 14 2 3130 3301 573979464 573979295 1.600000e-55 228.0
56 TraesCS5B01G249900 chr3A 87.838 74 9 0 459 532 398735698 398735625 2.830000e-13 87.9
57 TraesCS5B01G249900 chr6B 89.385 179 16 3 3130 3307 224871825 224871649 7.420000e-54 222.0
58 TraesCS5B01G249900 chr4D 86.154 65 9 0 459 523 399610448 399610384 2.850000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G249900 chr5B 432706606 432712298 5692 False 10514.000000 10514 100.000000 1 5693 1 chr5B.!!$F2 5692
1 TraesCS5B01G249900 chr5B 363254523 363255239 716 True 1208.000000 1208 97.075000 4976 5693 1 chr5B.!!$R1 717
2 TraesCS5B01G249900 chr5B 197532470 197533162 692 False 839.000000 839 88.467000 1 708 1 chr5B.!!$F1 707
3 TraesCS5B01G249900 chr5A 467754085 467755341 1256 True 2117.000000 2117 96.994000 920 2183 1 chr5A.!!$R3 1263
4 TraesCS5B01G249900 chr5A 467740647 467745298 4651 True 1524.666667 2438 98.263000 2175 4651 3 chr5A.!!$R4 2476
5 TraesCS5B01G249900 chr5A 409317582 409318296 714 True 1232.000000 1232 97.765000 4978 5693 1 chr5A.!!$R1 715
6 TraesCS5B01G249900 chr2D 577628186 577631235 3049 False 1304.500000 1947 85.413500 1032 4810 2 chr2D.!!$F2 3778
7 TraesCS5B01G249900 chr2D 565145732 565149349 3617 True 1296.000000 1740 81.807500 1032 4727 2 chr2D.!!$R1 3695
8 TraesCS5B01G249900 chr2D 565097989 565101671 3682 False 915.333333 1825 80.867667 991 4810 3 chr2D.!!$F1 3819
9 TraesCS5B01G249900 chr2B 694773753 694777957 4204 True 1225.000000 1919 84.860500 1036 4810 2 chr2B.!!$R6 3774
10 TraesCS5B01G249900 chr2B 694745041 694749250 4209 True 1221.500000 1923 84.693000 1036 4810 2 chr2B.!!$R5 3774
11 TraesCS5B01G249900 chr2B 677014671 677017491 2820 True 1072.500000 1718 82.854500 1032 3918 2 chr2B.!!$R2 2886
12 TraesCS5B01G249900 chr2B 19164674 19165456 782 False 869.000000 869 86.835000 2 783 1 chr2B.!!$F2 781
13 TraesCS5B01G249900 chr2B 694695543 694699840 4297 True 858.500000 1362 82.578500 1437 4810 2 chr2B.!!$R4 3373
14 TraesCS5B01G249900 chr2B 676764408 676768292 3884 False 818.666667 1760 81.468000 950 4796 3 chr2B.!!$F3 3846
15 TraesCS5B01G249900 chr2B 694603824 694605199 1375 True 425.000000 569 87.788500 2329 4554 2 chr2B.!!$R3 2225
16 TraesCS5B01G249900 chr2A 715774211 715777239 3028 True 1260.000000 1875 85.118000 1045 4803 2 chr2A.!!$R2 3758
17 TraesCS5B01G249900 chr2A 705586727 705590360 3633 True 1204.500000 1727 80.618000 997 4732 2 chr2A.!!$R1 3735
18 TraesCS5B01G249900 chr2A 705539091 705542884 3793 False 741.566667 1724 86.523333 985 4810 3 chr2A.!!$F3 3825
19 TraesCS5B01G249900 chr5D 315198052 315198768 716 True 1269.000000 1269 98.607000 4976 5693 1 chr5D.!!$R1 717
20 TraesCS5B01G249900 chr1B 44063276 44064182 906 True 1188.000000 1188 90.284000 1 913 1 chr1B.!!$R1 912
21 TraesCS5B01G249900 chr4A 547303826 547304748 922 False 1092.000000 1092 88.235000 1 919 1 chr4A.!!$F1 918
22 TraesCS5B01G249900 chr4A 698559667 698560200 533 False 752.000000 752 92.022000 1 539 1 chr4A.!!$F2 538
23 TraesCS5B01G249900 chr7B 79102152 79103034 882 True 1068.000000 1068 88.370000 4 919 1 chr7B.!!$R1 915
24 TraesCS5B01G249900 chr7D 53745974 53746889 915 False 929.000000 929 85.253000 1 913 1 chr7D.!!$F1 912
25 TraesCS5B01G249900 chr7A 30913925 30914592 667 False 929.000000 929 91.791000 211 878 1 chr7A.!!$F1 667
26 TraesCS5B01G249900 chr6D 442154748 442155670 922 True 793.000000 793 82.627000 1 919 1 chr6D.!!$R2 918

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 962 0.107654 AAAGAGCGGCACATAGGACC 60.108 55.0 1.45 0.00 0.00 4.46 F
1024 1083 0.322456 TCTCCCAAATCAACAGCCGG 60.322 55.0 0.00 0.00 0.00 6.13 F
1025 1084 1.937546 CTCCCAAATCAACAGCCGGC 61.938 60.0 21.89 21.89 0.00 6.13 F
2794 4945 0.808755 CAAACCACGCCAAGGTATCC 59.191 55.0 0.00 0.00 38.76 2.59 F
3167 8420 0.320697 AGTCGTTCTGGGGTAGCAAC 59.679 55.0 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 1842 1.466856 TAAGGACGATACTGCACGGT 58.533 50.000 0.00 0.00 0.00 4.83 R
2109 2214 2.879026 GTTCGAAAAGGGCTGAGTCTTT 59.121 45.455 0.00 0.00 35.01 2.52 R
2925 5178 3.819368 TCACCAAACTGCAGAATGAGAA 58.181 40.909 23.35 4.48 39.69 2.87 R
4691 12354 0.179001 ACGCTAGCAAAACCCACCTT 60.179 50.000 16.45 0.00 0.00 3.50 R
4755 12437 0.744414 TAACGGGTAGGACCTCGACG 60.744 60.000 7.99 8.72 38.64 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
375 390 4.909880 GCACGTTCTCAAATTTGTTCTACC 59.090 41.667 17.47 2.51 0.00 3.18
393 408 2.938838 ACCGGTTCAGAAAATGTTCCA 58.061 42.857 0.00 0.00 33.92 3.53
433 451 7.020602 GTGTTTCCAAAAATTGTTCCTGTTTG 58.979 34.615 0.00 0.00 0.00 2.93
678 706 4.205323 ACGTTTGGATCTTCGTTGTTTC 57.795 40.909 0.00 0.00 32.62 2.78
696 724 7.375017 CGTTGTTTCGGTTCTTATATTATTGCC 59.625 37.037 0.00 0.00 0.00 4.52
711 739 6.801539 ATTATTGCCCTACACATGTAATCG 57.198 37.500 0.00 0.00 0.00 3.34
722 752 4.084745 ACACATGTAATCGTTCGTTGTGAC 60.085 41.667 0.00 0.00 0.00 3.67
743 773 4.023980 ACTATGTCTACTGGCTAGCACAA 58.976 43.478 18.24 0.00 0.00 3.33
749 779 2.432456 TGGCTAGCACAAGTCGCG 60.432 61.111 18.24 0.00 0.00 5.87
760 790 0.934496 CAAGTCGCGTCTTTCACCAA 59.066 50.000 15.90 0.00 0.00 3.67
827 864 0.387367 ACAGACTCGCGCTACAGTTG 60.387 55.000 5.56 8.32 0.00 3.16
913 961 1.009829 CAAAGAGCGGCACATAGGAC 58.990 55.000 1.45 0.00 0.00 3.85
914 962 0.107654 AAAGAGCGGCACATAGGACC 60.108 55.000 1.45 0.00 0.00 4.46
989 1048 4.355549 TCTAGGGTTCGGTTCCATCTTAA 58.644 43.478 0.00 0.00 0.00 1.85
1024 1083 0.322456 TCTCCCAAATCAACAGCCGG 60.322 55.000 0.00 0.00 0.00 6.13
1025 1084 1.937546 CTCCCAAATCAACAGCCGGC 61.938 60.000 21.89 21.89 0.00 6.13
1026 1085 2.179018 CCAAATCAACAGCCGGCG 59.821 61.111 23.20 18.60 0.00 6.46
1027 1086 2.179018 CAAATCAACAGCCGGCGG 59.821 61.111 25.72 25.72 0.00 6.13
1744 1842 2.350895 CTCGGTTGCCATCCACCA 59.649 61.111 0.00 0.00 0.00 4.17
1789 1887 3.433615 GTCCATGAAGTTTGTTCTCCTCG 59.566 47.826 0.00 0.00 0.00 4.63
1977 2078 3.304928 CGAGCCAAAAACTTGAGCTTGAT 60.305 43.478 0.00 0.00 34.42 2.57
2109 2214 4.151121 TCATTTCTGATTGCACTTTGGGA 58.849 39.130 0.00 0.00 0.00 4.37
2256 2364 6.358118 TCCAAACGCAGTCATACATTAATC 57.642 37.500 0.00 0.00 45.00 1.75
2794 4945 0.808755 CAAACCACGCCAAGGTATCC 59.191 55.000 0.00 0.00 38.76 2.59
2866 5022 4.698201 TCTGGACATCTGTAAAACCACA 57.302 40.909 0.00 0.00 0.00 4.17
2893 5097 1.201181 AGTCTCAACGCTCTACTGCTG 59.799 52.381 0.00 0.00 0.00 4.41
2894 5098 1.200252 GTCTCAACGCTCTACTGCTGA 59.800 52.381 0.00 0.00 0.00 4.26
2896 5100 3.065510 GTCTCAACGCTCTACTGCTGATA 59.934 47.826 0.00 0.00 0.00 2.15
2897 5101 3.065510 TCTCAACGCTCTACTGCTGATAC 59.934 47.826 0.00 0.00 0.00 2.24
2898 5102 2.752903 TCAACGCTCTACTGCTGATACA 59.247 45.455 0.00 0.00 0.00 2.29
2902 5148 4.177026 ACGCTCTACTGCTGATACAAAAG 58.823 43.478 0.00 0.00 0.00 2.27
2903 5149 4.177026 CGCTCTACTGCTGATACAAAAGT 58.823 43.478 0.00 0.00 0.00 2.66
2953 5208 3.351740 TCTGCAGTTTGGTGAAGTTTGA 58.648 40.909 14.67 0.00 0.00 2.69
3005 5352 5.120399 TGGTATTGTGGCCTTATCTTTACG 58.880 41.667 3.32 0.00 0.00 3.18
3070 5604 4.686554 GCAACAGATTAGTTCGAAGTGTCT 59.313 41.667 15.84 14.61 0.00 3.41
3099 8352 5.775195 TGGTCGTCCATATCTGATCTACAAT 59.225 40.000 0.00 0.00 39.03 2.71
3100 8353 6.071896 TGGTCGTCCATATCTGATCTACAATC 60.072 42.308 0.00 0.00 39.03 2.67
3101 8354 6.151985 GGTCGTCCATATCTGATCTACAATCT 59.848 42.308 0.00 0.00 0.00 2.40
3102 8355 7.026562 GTCGTCCATATCTGATCTACAATCTG 58.973 42.308 0.00 0.00 0.00 2.90
3103 8356 6.151817 TCGTCCATATCTGATCTACAATCTGG 59.848 42.308 0.00 0.00 0.00 3.86
3104 8357 6.626844 CGTCCATATCTGATCTACAATCTGGG 60.627 46.154 0.00 0.00 0.00 4.45
3105 8358 6.212388 GTCCATATCTGATCTACAATCTGGGT 59.788 42.308 0.00 0.00 0.00 4.51
3106 8359 7.397476 GTCCATATCTGATCTACAATCTGGGTA 59.603 40.741 0.00 0.00 0.00 3.69
3107 8360 7.955750 TCCATATCTGATCTACAATCTGGGTAA 59.044 37.037 0.00 0.00 0.00 2.85
3108 8361 8.597167 CCATATCTGATCTACAATCTGGGTAAA 58.403 37.037 0.00 0.00 0.00 2.01
3112 8365 9.927081 ATCTGATCTACAATCTGGGTAAAATTT 57.073 29.630 0.00 0.00 0.00 1.82
3113 8366 9.753674 TCTGATCTACAATCTGGGTAAAATTTT 57.246 29.630 8.75 8.75 0.00 1.82
3115 8368 8.966868 TGATCTACAATCTGGGTAAAATTTTCC 58.033 33.333 6.72 8.54 0.00 3.13
3116 8369 7.385778 TCTACAATCTGGGTAAAATTTTCCG 57.614 36.000 6.72 1.28 0.00 4.30
3117 8370 6.943718 TCTACAATCTGGGTAAAATTTTCCGT 59.056 34.615 6.72 4.30 0.00 4.69
3118 8371 6.413783 ACAATCTGGGTAAAATTTTCCGTT 57.586 33.333 6.72 0.00 0.00 4.44
3119 8372 6.822442 ACAATCTGGGTAAAATTTTCCGTTT 58.178 32.000 6.72 0.47 0.00 3.60
3120 8373 6.704050 ACAATCTGGGTAAAATTTTCCGTTTG 59.296 34.615 6.72 12.15 0.00 2.93
3121 8374 6.658188 ATCTGGGTAAAATTTTCCGTTTGA 57.342 33.333 6.72 1.40 0.00 2.69
3122 8375 6.658188 TCTGGGTAAAATTTTCCGTTTGAT 57.342 33.333 6.72 0.00 0.00 2.57
3123 8376 6.683715 TCTGGGTAAAATTTTCCGTTTGATC 58.316 36.000 6.72 0.00 0.00 2.92
3124 8377 6.492087 TCTGGGTAAAATTTTCCGTTTGATCT 59.508 34.615 6.72 0.00 0.00 2.75
3125 8378 7.666388 TCTGGGTAAAATTTTCCGTTTGATCTA 59.334 33.333 6.72 0.00 0.00 1.98
3126 8379 8.179509 TGGGTAAAATTTTCCGTTTGATCTAA 57.820 30.769 6.72 0.00 0.00 2.10
3127 8380 8.639761 TGGGTAAAATTTTCCGTTTGATCTAAA 58.360 29.630 6.72 0.00 0.00 1.85
3128 8381 9.135843 GGGTAAAATTTTCCGTTTGATCTAAAG 57.864 33.333 6.72 0.00 0.00 1.85
3129 8382 8.644619 GGTAAAATTTTCCGTTTGATCTAAAGC 58.355 33.333 6.72 0.00 0.00 3.51
3130 8383 9.187455 GTAAAATTTTCCGTTTGATCTAAAGCA 57.813 29.630 6.72 0.00 0.00 3.91
3131 8384 8.831715 AAAATTTTCCGTTTGATCTAAAGCAT 57.168 26.923 0.00 0.00 0.00 3.79
3132 8385 7.816945 AATTTTCCGTTTGATCTAAAGCATG 57.183 32.000 0.00 0.00 0.00 4.06
3133 8386 4.355543 TTCCGTTTGATCTAAAGCATGC 57.644 40.909 10.51 10.51 0.00 4.06
3134 8387 3.609853 TCCGTTTGATCTAAAGCATGCT 58.390 40.909 16.30 16.30 0.00 3.79
3135 8388 4.009675 TCCGTTTGATCTAAAGCATGCTT 58.990 39.130 27.21 27.21 37.98 3.91
3136 8389 4.094887 TCCGTTTGATCTAAAGCATGCTTC 59.905 41.667 32.01 20.02 34.84 3.86
3137 8390 4.095483 CCGTTTGATCTAAAGCATGCTTCT 59.905 41.667 32.01 22.68 34.84 2.85
3138 8391 5.261661 CGTTTGATCTAAAGCATGCTTCTC 58.738 41.667 32.01 23.64 34.84 2.87
3139 8392 5.261661 GTTTGATCTAAAGCATGCTTCTCG 58.738 41.667 32.01 21.74 34.84 4.04
3140 8393 4.391405 TGATCTAAAGCATGCTTCTCGA 57.609 40.909 32.01 25.56 34.84 4.04
3141 8394 4.366586 TGATCTAAAGCATGCTTCTCGAG 58.633 43.478 32.01 23.93 34.84 4.04
3142 8395 3.876274 TCTAAAGCATGCTTCTCGAGT 57.124 42.857 32.01 18.17 34.84 4.18
3143 8396 4.193826 TCTAAAGCATGCTTCTCGAGTT 57.806 40.909 32.01 17.45 34.84 3.01
3144 8397 3.928992 TCTAAAGCATGCTTCTCGAGTTG 59.071 43.478 32.01 16.38 34.84 3.16
3145 8398 2.462456 AAGCATGCTTCTCGAGTTGA 57.538 45.000 27.21 0.00 0.00 3.18
3146 8399 2.687700 AGCATGCTTCTCGAGTTGAT 57.312 45.000 16.30 0.05 0.00 2.57
3147 8400 2.277969 AGCATGCTTCTCGAGTTGATG 58.722 47.619 16.30 11.31 0.00 3.07
3148 8401 2.093816 AGCATGCTTCTCGAGTTGATGA 60.094 45.455 16.30 0.00 0.00 2.92
3149 8402 2.284684 GCATGCTTCTCGAGTTGATGAG 59.715 50.000 11.37 3.73 0.00 2.90
3150 8403 3.519579 CATGCTTCTCGAGTTGATGAGT 58.480 45.455 13.13 0.00 33.88 3.41
3151 8404 3.223423 TGCTTCTCGAGTTGATGAGTC 57.777 47.619 13.13 0.00 33.88 3.36
3158 8411 2.254459 CGAGTTGATGAGTCGTTCTGG 58.746 52.381 0.00 0.00 44.35 3.86
3159 8412 2.611518 GAGTTGATGAGTCGTTCTGGG 58.388 52.381 0.00 0.00 0.00 4.45
3160 8413 1.276421 AGTTGATGAGTCGTTCTGGGG 59.724 52.381 0.00 0.00 0.00 4.96
3161 8414 1.002087 GTTGATGAGTCGTTCTGGGGT 59.998 52.381 0.00 0.00 0.00 4.95
3162 8415 2.225382 TGATGAGTCGTTCTGGGGTA 57.775 50.000 0.00 0.00 0.00 3.69
3163 8416 2.100197 TGATGAGTCGTTCTGGGGTAG 58.900 52.381 0.00 0.00 0.00 3.18
3164 8417 0.824759 ATGAGTCGTTCTGGGGTAGC 59.175 55.000 0.00 0.00 0.00 3.58
3165 8418 0.541063 TGAGTCGTTCTGGGGTAGCA 60.541 55.000 0.00 0.00 0.00 3.49
3166 8419 0.606604 GAGTCGTTCTGGGGTAGCAA 59.393 55.000 0.00 0.00 0.00 3.91
3167 8420 0.320697 AGTCGTTCTGGGGTAGCAAC 59.679 55.000 0.00 0.00 0.00 4.17
3168 8421 0.320697 GTCGTTCTGGGGTAGCAACT 59.679 55.000 0.00 0.00 0.00 3.16
3169 8422 0.606604 TCGTTCTGGGGTAGCAACTC 59.393 55.000 0.00 0.00 0.00 3.01
3170 8423 0.736325 CGTTCTGGGGTAGCAACTCG 60.736 60.000 0.00 0.00 0.00 4.18
3171 8424 0.391263 GTTCTGGGGTAGCAACTCGG 60.391 60.000 0.00 0.00 0.00 4.63
3172 8425 0.543410 TTCTGGGGTAGCAACTCGGA 60.543 55.000 0.00 0.00 0.00 4.55
3173 8426 0.543410 TCTGGGGTAGCAACTCGGAA 60.543 55.000 0.00 0.00 0.00 4.30
3174 8427 0.323629 CTGGGGTAGCAACTCGGAAA 59.676 55.000 0.00 0.00 0.00 3.13
3175 8428 0.766131 TGGGGTAGCAACTCGGAAAA 59.234 50.000 0.00 0.00 0.00 2.29
3176 8429 1.143277 TGGGGTAGCAACTCGGAAAAA 59.857 47.619 0.00 0.00 0.00 1.94
3177 8430 1.810755 GGGGTAGCAACTCGGAAAAAG 59.189 52.381 0.00 0.00 0.00 2.27
3178 8431 2.501261 GGGTAGCAACTCGGAAAAAGT 58.499 47.619 0.00 0.00 0.00 2.66
3179 8432 2.483106 GGGTAGCAACTCGGAAAAAGTC 59.517 50.000 0.00 0.00 0.00 3.01
3180 8433 2.157085 GGTAGCAACTCGGAAAAAGTCG 59.843 50.000 0.00 0.00 0.00 4.18
3181 8434 2.234300 AGCAACTCGGAAAAAGTCGA 57.766 45.000 0.00 0.00 0.00 4.20
3185 8438 3.516578 CTCGGAAAAAGTCGAGCCT 57.483 52.632 0.00 0.00 44.68 4.58
3186 8439 1.071605 CTCGGAAAAAGTCGAGCCTG 58.928 55.000 0.00 0.00 44.68 4.85
3187 8440 0.949105 TCGGAAAAAGTCGAGCCTGC 60.949 55.000 0.00 0.00 0.00 4.85
3188 8441 1.227999 CGGAAAAAGTCGAGCCTGCA 61.228 55.000 0.00 0.00 0.00 4.41
3189 8442 0.519077 GGAAAAAGTCGAGCCTGCAG 59.481 55.000 6.78 6.78 0.00 4.41
3190 8443 1.230324 GAAAAAGTCGAGCCTGCAGT 58.770 50.000 13.81 0.00 0.00 4.40
3191 8444 1.604278 GAAAAAGTCGAGCCTGCAGTT 59.396 47.619 13.81 0.00 0.00 3.16
3192 8445 0.947244 AAAAGTCGAGCCTGCAGTTG 59.053 50.000 13.81 0.00 0.00 3.16
3193 8446 1.510480 AAAGTCGAGCCTGCAGTTGC 61.510 55.000 13.81 10.03 42.50 4.17
3194 8447 3.782244 GTCGAGCCTGCAGTTGCG 61.782 66.667 13.81 12.51 45.83 4.85
3195 8448 3.989787 TCGAGCCTGCAGTTGCGA 61.990 61.111 13.81 14.63 45.83 5.10
3196 8449 3.782244 CGAGCCTGCAGTTGCGAC 61.782 66.667 13.81 8.67 45.83 5.19
3197 8450 2.358003 GAGCCTGCAGTTGCGACT 60.358 61.111 13.81 0.00 45.83 4.18
3198 8451 1.079819 GAGCCTGCAGTTGCGACTA 60.080 57.895 13.81 0.00 45.83 2.59
3199 8452 1.079543 AGCCTGCAGTTGCGACTAG 60.080 57.895 13.81 1.26 45.83 2.57
3200 8453 1.374758 GCCTGCAGTTGCGACTAGT 60.375 57.895 13.81 0.00 45.83 2.57
3201 8454 1.355066 GCCTGCAGTTGCGACTAGTC 61.355 60.000 13.81 13.18 45.83 2.59
3231 8484 5.049398 GAGTCATGAGTCGACACTAAAGT 57.951 43.478 19.50 2.83 35.77 2.66
3232 8485 5.455056 AGTCATGAGTCGACACTAAAGTT 57.545 39.130 19.50 0.00 35.77 2.66
3233 8486 5.223382 AGTCATGAGTCGACACTAAAGTTG 58.777 41.667 19.50 3.91 35.77 3.16
3234 8487 5.009710 AGTCATGAGTCGACACTAAAGTTGA 59.990 40.000 19.50 6.15 35.77 3.18
3235 8488 5.343593 GTCATGAGTCGACACTAAAGTTGAG 59.656 44.000 19.50 0.00 32.72 3.02
3236 8489 4.913335 TGAGTCGACACTAAAGTTGAGT 57.087 40.909 19.50 0.00 38.09 3.41
3237 8490 4.856664 TGAGTCGACACTAAAGTTGAGTC 58.143 43.478 19.50 10.74 46.06 3.36
3238 8491 4.228317 GAGTCGACACTAAAGTTGAGTCC 58.772 47.826 19.50 0.00 42.64 3.85
3239 8492 2.978489 GTCGACACTAAAGTTGAGTCCG 59.022 50.000 11.55 5.66 32.72 4.79
3240 8493 2.880268 TCGACACTAAAGTTGAGTCCGA 59.120 45.455 9.30 9.30 30.95 4.55
3241 8494 2.978489 CGACACTAAAGTTGAGTCCGAC 59.022 50.000 6.01 0.00 0.00 4.79
3242 8495 3.549423 CGACACTAAAGTTGAGTCCGACA 60.549 47.826 0.40 0.00 0.00 4.35
3243 8496 4.557205 GACACTAAAGTTGAGTCCGACAT 58.443 43.478 0.40 0.00 0.00 3.06
3244 8497 4.957296 ACACTAAAGTTGAGTCCGACATT 58.043 39.130 0.40 0.00 0.00 2.71
3245 8498 5.365619 ACACTAAAGTTGAGTCCGACATTT 58.634 37.500 0.40 0.00 0.00 2.32
3246 8499 5.820947 ACACTAAAGTTGAGTCCGACATTTT 59.179 36.000 0.40 0.00 0.00 1.82
3247 8500 6.317893 ACACTAAAGTTGAGTCCGACATTTTT 59.682 34.615 0.40 0.00 0.00 1.94
3298 8551 4.744570 GTCACGTGACTAGAAATCCATGA 58.255 43.478 35.51 0.00 41.65 3.07
3668 9343 2.821378 CAACCTGATGATCCAACAAGCA 59.179 45.455 0.00 0.00 0.00 3.91
3849 9609 1.106285 GCATGATGGTTCCCTGTTCC 58.894 55.000 0.00 0.00 0.00 3.62
3949 9731 4.349663 TGTGGCATTATACTCGTTTTGC 57.650 40.909 0.00 0.00 0.00 3.68
4536 12168 0.737219 ATCCCTACGAAGACGAACCG 59.263 55.000 0.00 0.00 42.66 4.44
4702 12369 5.073144 TCTGAATCTGAGTAAGGTGGGTTTT 59.927 40.000 0.00 0.00 0.00 2.43
4714 12381 1.198408 GTGGGTTTTGCTAGCGTTACC 59.802 52.381 18.55 18.55 0.00 2.85
4752 12434 4.460263 TCCAACCCGATTGAAGATATTGG 58.540 43.478 1.35 0.00 41.23 3.16
4755 12437 4.086706 ACCCGATTGAAGATATTGGGAC 57.913 45.455 13.83 0.00 46.05 4.46
4810 12493 8.833231 TTGCTGTAGCCATAGTTAAGATATTC 57.167 34.615 0.80 0.00 41.18 1.75
4811 12494 7.386851 TGCTGTAGCCATAGTTAAGATATTCC 58.613 38.462 0.80 0.00 41.18 3.01
4812 12495 6.531948 GCTGTAGCCATAGTTAAGATATTCCG 59.468 42.308 0.00 0.00 34.31 4.30
4813 12496 7.577046 GCTGTAGCCATAGTTAAGATATTCCGA 60.577 40.741 0.00 0.00 34.31 4.55
4814 12497 8.362464 TGTAGCCATAGTTAAGATATTCCGAT 57.638 34.615 0.00 0.00 0.00 4.18
4815 12498 8.251026 TGTAGCCATAGTTAAGATATTCCGATG 58.749 37.037 0.00 0.00 0.00 3.84
4816 12499 7.482169 AGCCATAGTTAAGATATTCCGATGA 57.518 36.000 0.00 0.00 0.00 2.92
4817 12500 7.551585 AGCCATAGTTAAGATATTCCGATGAG 58.448 38.462 0.00 0.00 0.00 2.90
4818 12501 6.256757 GCCATAGTTAAGATATTCCGATGAGC 59.743 42.308 0.00 0.00 0.00 4.26
4819 12502 6.473778 CCATAGTTAAGATATTCCGATGAGCG 59.526 42.308 0.00 0.00 40.47 5.03
4820 12503 5.455056 AGTTAAGATATTCCGATGAGCGT 57.545 39.130 0.00 0.00 38.67 5.07
4821 12504 5.223382 AGTTAAGATATTCCGATGAGCGTG 58.777 41.667 0.00 0.00 38.67 5.34
4822 12505 2.071688 AGATATTCCGATGAGCGTGC 57.928 50.000 0.00 0.00 38.67 5.34
4823 12506 1.071605 GATATTCCGATGAGCGTGCC 58.928 55.000 0.00 0.00 38.67 5.01
4824 12507 0.667487 ATATTCCGATGAGCGTGCCG 60.667 55.000 0.00 0.00 38.67 5.69
4825 12508 2.011741 TATTCCGATGAGCGTGCCGT 62.012 55.000 0.00 0.00 38.67 5.68
4826 12509 2.852495 ATTCCGATGAGCGTGCCGTT 62.852 55.000 0.00 0.00 38.67 4.44
4827 12510 3.118454 CCGATGAGCGTGCCGTTT 61.118 61.111 0.00 0.00 38.67 3.60
4828 12511 1.807981 CCGATGAGCGTGCCGTTTA 60.808 57.895 0.00 0.00 38.67 2.01
4829 12512 1.631072 CGATGAGCGTGCCGTTTAG 59.369 57.895 0.00 0.00 34.64 1.85
4830 12513 1.076533 CGATGAGCGTGCCGTTTAGT 61.077 55.000 0.00 0.00 34.64 2.24
4831 12514 0.645868 GATGAGCGTGCCGTTTAGTC 59.354 55.000 0.00 0.00 0.00 2.59
4832 12515 0.246635 ATGAGCGTGCCGTTTAGTCT 59.753 50.000 0.00 0.00 0.00 3.24
4833 12516 0.666274 TGAGCGTGCCGTTTAGTCTG 60.666 55.000 0.00 0.00 0.00 3.51
4834 12517 0.666577 GAGCGTGCCGTTTAGTCTGT 60.667 55.000 0.00 0.00 0.00 3.41
4835 12518 0.249741 AGCGTGCCGTTTAGTCTGTT 60.250 50.000 0.00 0.00 0.00 3.16
4836 12519 0.584876 GCGTGCCGTTTAGTCTGTTT 59.415 50.000 0.00 0.00 0.00 2.83
4837 12520 1.794116 GCGTGCCGTTTAGTCTGTTTA 59.206 47.619 0.00 0.00 0.00 2.01
4838 12521 2.414138 GCGTGCCGTTTAGTCTGTTTAT 59.586 45.455 0.00 0.00 0.00 1.40
4839 12522 3.120442 GCGTGCCGTTTAGTCTGTTTATT 60.120 43.478 0.00 0.00 0.00 1.40
4840 12523 4.091800 GCGTGCCGTTTAGTCTGTTTATTA 59.908 41.667 0.00 0.00 0.00 0.98
4841 12524 5.220529 GCGTGCCGTTTAGTCTGTTTATTAT 60.221 40.000 0.00 0.00 0.00 1.28
4842 12525 6.673796 GCGTGCCGTTTAGTCTGTTTATTATT 60.674 38.462 0.00 0.00 0.00 1.40
4843 12526 6.681178 CGTGCCGTTTAGTCTGTTTATTATTG 59.319 38.462 0.00 0.00 0.00 1.90
4844 12527 6.964934 GTGCCGTTTAGTCTGTTTATTATTGG 59.035 38.462 0.00 0.00 0.00 3.16
4845 12528 6.879993 TGCCGTTTAGTCTGTTTATTATTGGA 59.120 34.615 0.00 0.00 0.00 3.53
4846 12529 7.554835 TGCCGTTTAGTCTGTTTATTATTGGAT 59.445 33.333 0.00 0.00 0.00 3.41
4847 12530 7.855904 GCCGTTTAGTCTGTTTATTATTGGATG 59.144 37.037 0.00 0.00 0.00 3.51
4848 12531 8.889717 CCGTTTAGTCTGTTTATTATTGGATGT 58.110 33.333 0.00 0.00 0.00 3.06
4849 12532 9.702726 CGTTTAGTCTGTTTATTATTGGATGTG 57.297 33.333 0.00 0.00 0.00 3.21
4850 12533 9.503427 GTTTAGTCTGTTTATTATTGGATGTGC 57.497 33.333 0.00 0.00 0.00 4.57
4851 12534 9.461312 TTTAGTCTGTTTATTATTGGATGTGCT 57.539 29.630 0.00 0.00 0.00 4.40
4852 12535 7.325660 AGTCTGTTTATTATTGGATGTGCTG 57.674 36.000 0.00 0.00 0.00 4.41
4853 12536 7.112122 AGTCTGTTTATTATTGGATGTGCTGA 58.888 34.615 0.00 0.00 0.00 4.26
4854 12537 7.281774 AGTCTGTTTATTATTGGATGTGCTGAG 59.718 37.037 0.00 0.00 0.00 3.35
4855 12538 7.280876 GTCTGTTTATTATTGGATGTGCTGAGA 59.719 37.037 0.00 0.00 0.00 3.27
4856 12539 7.496920 TCTGTTTATTATTGGATGTGCTGAGAG 59.503 37.037 0.00 0.00 0.00 3.20
4857 12540 7.112122 TGTTTATTATTGGATGTGCTGAGAGT 58.888 34.615 0.00 0.00 0.00 3.24
4858 12541 8.264347 TGTTTATTATTGGATGTGCTGAGAGTA 58.736 33.333 0.00 0.00 0.00 2.59
4859 12542 9.277783 GTTTATTATTGGATGTGCTGAGAGTAT 57.722 33.333 0.00 0.00 0.00 2.12
4860 12543 9.851686 TTTATTATTGGATGTGCTGAGAGTATT 57.148 29.630 0.00 0.00 0.00 1.89
4861 12544 7.976135 ATTATTGGATGTGCTGAGAGTATTC 57.024 36.000 0.00 0.00 0.00 1.75
4862 12545 5.627182 ATTGGATGTGCTGAGAGTATTCT 57.373 39.130 0.00 0.00 36.01 2.40
4863 12546 4.397481 TGGATGTGCTGAGAGTATTCTG 57.603 45.455 0.00 0.00 32.53 3.02
4864 12547 4.026052 TGGATGTGCTGAGAGTATTCTGA 58.974 43.478 0.00 0.00 32.53 3.27
4865 12548 4.467438 TGGATGTGCTGAGAGTATTCTGAA 59.533 41.667 0.00 0.00 32.53 3.02
4866 12549 5.129980 TGGATGTGCTGAGAGTATTCTGAAT 59.870 40.000 8.14 8.14 32.53 2.57
4867 12550 5.466058 GGATGTGCTGAGAGTATTCTGAATG 59.534 44.000 13.01 0.00 32.53 2.67
4868 12551 4.186926 TGTGCTGAGAGTATTCTGAATGC 58.813 43.478 13.01 11.49 32.53 3.56
4869 12552 4.186926 GTGCTGAGAGTATTCTGAATGCA 58.813 43.478 18.52 11.88 32.53 3.96
4870 12553 4.270566 GTGCTGAGAGTATTCTGAATGCAG 59.729 45.833 18.52 14.30 43.67 4.41
4888 12571 3.607422 CAGATGTTGCAAGTTCGTTCA 57.393 42.857 0.00 0.00 0.00 3.18
4889 12572 3.291585 CAGATGTTGCAAGTTCGTTCAC 58.708 45.455 0.00 0.00 0.00 3.18
4890 12573 2.290641 AGATGTTGCAAGTTCGTTCACC 59.709 45.455 0.00 0.00 0.00 4.02
4891 12574 1.454201 TGTTGCAAGTTCGTTCACCA 58.546 45.000 0.00 0.00 0.00 4.17
4892 12575 2.020720 TGTTGCAAGTTCGTTCACCAT 58.979 42.857 0.00 0.00 0.00 3.55
4893 12576 2.425312 TGTTGCAAGTTCGTTCACCATT 59.575 40.909 0.00 0.00 0.00 3.16
4894 12577 3.628032 TGTTGCAAGTTCGTTCACCATTA 59.372 39.130 0.00 0.00 0.00 1.90
4895 12578 4.219033 GTTGCAAGTTCGTTCACCATTAG 58.781 43.478 0.00 0.00 0.00 1.73
4896 12579 2.225491 TGCAAGTTCGTTCACCATTAGC 59.775 45.455 0.00 0.00 0.00 3.09
4897 12580 2.484264 GCAAGTTCGTTCACCATTAGCT 59.516 45.455 0.00 0.00 0.00 3.32
4898 12581 3.682858 GCAAGTTCGTTCACCATTAGCTA 59.317 43.478 0.00 0.00 0.00 3.32
4899 12582 4.332819 GCAAGTTCGTTCACCATTAGCTAT 59.667 41.667 0.00 0.00 0.00 2.97
4900 12583 5.522460 GCAAGTTCGTTCACCATTAGCTATA 59.478 40.000 0.00 0.00 0.00 1.31
4901 12584 6.036735 GCAAGTTCGTTCACCATTAGCTATAA 59.963 38.462 0.00 0.00 0.00 0.98
4902 12585 7.254795 GCAAGTTCGTTCACCATTAGCTATAAT 60.255 37.037 0.00 0.00 31.51 1.28
4903 12586 8.612619 CAAGTTCGTTCACCATTAGCTATAATT 58.387 33.333 0.00 0.00 28.73 1.40
4904 12587 8.732746 AGTTCGTTCACCATTAGCTATAATTT 57.267 30.769 0.00 0.00 28.73 1.82
4905 12588 8.827677 AGTTCGTTCACCATTAGCTATAATTTC 58.172 33.333 0.00 0.00 28.73 2.17
4906 12589 8.609176 GTTCGTTCACCATTAGCTATAATTTCA 58.391 33.333 0.00 0.00 28.73 2.69
4907 12590 8.138365 TCGTTCACCATTAGCTATAATTTCAC 57.862 34.615 0.00 0.00 28.73 3.18
4908 12591 7.766738 TCGTTCACCATTAGCTATAATTTCACA 59.233 33.333 0.00 0.00 28.73 3.58
4909 12592 8.394877 CGTTCACCATTAGCTATAATTTCACAA 58.605 33.333 0.00 0.00 28.73 3.33
4912 12595 8.405531 TCACCATTAGCTATAATTTCACAAAGC 58.594 33.333 0.00 0.00 28.73 3.51
4913 12596 8.190122 CACCATTAGCTATAATTTCACAAAGCA 58.810 33.333 0.00 0.00 32.42 3.91
4914 12597 8.748412 ACCATTAGCTATAATTTCACAAAGCAA 58.252 29.630 0.00 0.00 32.42 3.91
4915 12598 9.241317 CCATTAGCTATAATTTCACAAAGCAAG 57.759 33.333 0.00 0.00 32.42 4.01
4916 12599 9.793252 CATTAGCTATAATTTCACAAAGCAAGT 57.207 29.630 0.00 0.00 32.42 3.16
4925 12608 8.947055 AATTTCACAAAGCAAGTTTAATCTGT 57.053 26.923 0.00 0.00 0.00 3.41
4926 12609 8.947055 ATTTCACAAAGCAAGTTTAATCTGTT 57.053 26.923 0.00 0.00 0.00 3.16
4927 12610 8.770438 TTTCACAAAGCAAGTTTAATCTGTTT 57.230 26.923 0.00 0.00 0.00 2.83
4928 12611 7.985634 TCACAAAGCAAGTTTAATCTGTTTC 57.014 32.000 0.00 0.00 0.00 2.78
4929 12612 7.542890 TCACAAAGCAAGTTTAATCTGTTTCA 58.457 30.769 0.00 0.00 0.00 2.69
4930 12613 8.196771 TCACAAAGCAAGTTTAATCTGTTTCAT 58.803 29.630 0.00 0.00 0.00 2.57
4931 12614 8.270799 CACAAAGCAAGTTTAATCTGTTTCATG 58.729 33.333 0.00 0.00 0.00 3.07
4932 12615 7.981225 ACAAAGCAAGTTTAATCTGTTTCATGT 59.019 29.630 0.00 0.00 0.00 3.21
4933 12616 8.819974 CAAAGCAAGTTTAATCTGTTTCATGTT 58.180 29.630 0.00 0.00 0.00 2.71
4944 12627 7.672983 ATCTGTTTCATGTTAAATCGTCTGT 57.327 32.000 0.00 0.00 0.00 3.41
4945 12628 7.117241 TCTGTTTCATGTTAAATCGTCTGTC 57.883 36.000 0.00 0.00 0.00 3.51
4946 12629 6.147164 TCTGTTTCATGTTAAATCGTCTGTCC 59.853 38.462 0.00 0.00 0.00 4.02
4947 12630 5.107259 TGTTTCATGTTAAATCGTCTGTCCG 60.107 40.000 0.00 0.00 0.00 4.79
4948 12631 4.182693 TCATGTTAAATCGTCTGTCCGT 57.817 40.909 0.00 0.00 0.00 4.69
4949 12632 4.562082 TCATGTTAAATCGTCTGTCCGTT 58.438 39.130 0.00 0.00 0.00 4.44
4950 12633 5.712004 TCATGTTAAATCGTCTGTCCGTTA 58.288 37.500 0.00 0.00 0.00 3.18
4951 12634 6.334989 TCATGTTAAATCGTCTGTCCGTTAT 58.665 36.000 0.00 0.00 0.00 1.89
4952 12635 6.254804 TCATGTTAAATCGTCTGTCCGTTATG 59.745 38.462 0.00 0.00 0.00 1.90
4953 12636 5.712004 TGTTAAATCGTCTGTCCGTTATGA 58.288 37.500 0.00 0.00 0.00 2.15
4954 12637 6.334989 TGTTAAATCGTCTGTCCGTTATGAT 58.665 36.000 0.00 0.00 0.00 2.45
4955 12638 6.254804 TGTTAAATCGTCTGTCCGTTATGATG 59.745 38.462 0.00 0.00 0.00 3.07
4956 12639 4.649088 AATCGTCTGTCCGTTATGATGA 57.351 40.909 0.00 0.00 0.00 2.92
4957 12640 3.692791 TCGTCTGTCCGTTATGATGAG 57.307 47.619 0.00 0.00 0.00 2.90
4958 12641 2.357952 TCGTCTGTCCGTTATGATGAGG 59.642 50.000 0.00 0.00 0.00 3.86
4959 12642 2.357952 CGTCTGTCCGTTATGATGAGGA 59.642 50.000 0.00 0.00 0.00 3.71
4960 12643 3.004839 CGTCTGTCCGTTATGATGAGGAT 59.995 47.826 0.00 0.00 35.00 3.24
4961 12644 4.302455 GTCTGTCCGTTATGATGAGGATG 58.698 47.826 0.00 0.00 35.00 3.51
4962 12645 4.038042 GTCTGTCCGTTATGATGAGGATGA 59.962 45.833 0.00 0.00 35.00 2.92
4963 12646 4.835056 TCTGTCCGTTATGATGAGGATGAT 59.165 41.667 0.00 0.00 35.00 2.45
4964 12647 6.010219 TCTGTCCGTTATGATGAGGATGATA 58.990 40.000 0.00 0.00 35.00 2.15
4965 12648 6.493458 TCTGTCCGTTATGATGAGGATGATAA 59.507 38.462 0.00 0.00 35.00 1.75
4966 12649 7.179160 TCTGTCCGTTATGATGAGGATGATAAT 59.821 37.037 0.00 0.00 35.00 1.28
4967 12650 8.361169 TGTCCGTTATGATGAGGATGATAATA 57.639 34.615 0.00 0.00 35.00 0.98
4968 12651 8.811994 TGTCCGTTATGATGAGGATGATAATAA 58.188 33.333 0.00 0.00 35.00 1.40
4969 12652 9.823647 GTCCGTTATGATGAGGATGATAATAAT 57.176 33.333 0.00 0.00 35.00 1.28
5259 12942 0.749091 TCATCAGGAAGCAATGCGGG 60.749 55.000 0.00 0.00 0.00 6.13
5274 12957 1.003839 CGGGGACACTTAGCAAGCA 60.004 57.895 0.00 0.00 0.00 3.91
5279 12962 3.370527 GGGGACACTTAGCAAGCAAGATA 60.371 47.826 9.93 0.00 0.00 1.98
5306 12989 3.834489 TTGTGTACGGTTGAAAGGGTA 57.166 42.857 0.00 0.00 0.00 3.69
5387 13070 4.657814 AGGCCAGTCCTTCAATTTAAGA 57.342 40.909 5.01 0.00 44.75 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
202 214 6.369629 TGGGAACATTTCTTTAAACTCTGGA 58.630 36.000 0.00 0.00 33.40 3.86
203 215 6.648879 TGGGAACATTTCTTTAAACTCTGG 57.351 37.500 0.00 0.00 33.40 3.86
375 390 4.568152 AACTGGAACATTTTCTGAACCG 57.432 40.909 0.00 0.00 38.20 4.44
678 706 6.932400 TGTGTAGGGCAATAATATAAGAACCG 59.068 38.462 0.00 0.00 0.00 4.44
696 724 4.624024 ACAACGAACGATTACATGTGTAGG 59.376 41.667 9.11 0.00 0.00 3.18
711 739 4.857588 CCAGTAGACATAGTCACAACGAAC 59.142 45.833 0.00 0.00 34.60 3.95
722 752 4.098654 ACTTGTGCTAGCCAGTAGACATAG 59.901 45.833 13.29 10.60 0.00 2.23
743 773 1.217882 CTTTGGTGAAAGACGCGACT 58.782 50.000 15.93 10.02 41.12 4.18
749 779 2.230660 CCAGGACCTTTGGTGAAAGAC 58.769 52.381 0.00 0.00 41.12 3.01
760 790 2.066999 GGATCGAGCCCAGGACCTT 61.067 63.158 9.02 0.00 0.00 3.50
799 834 1.060726 CGCGAGTCTGTTCACGTCTC 61.061 60.000 0.00 0.00 0.00 3.36
922 970 1.123928 CCCTCTTATCGCAAGTCCCT 58.876 55.000 0.00 0.00 39.48 4.20
989 1048 2.367512 GAGGCATCTGGGAGGGGT 60.368 66.667 0.00 0.00 0.00 4.95
1744 1842 1.466856 TAAGGACGATACTGCACGGT 58.533 50.000 0.00 0.00 0.00 4.83
1789 1887 2.158798 GGTAGAAGGTGTGGATTAGCCC 60.159 54.545 0.00 0.00 34.97 5.19
1977 2078 7.255139 CGTAACAGACTCATGGTACTGATCATA 60.255 40.741 16.33 0.00 40.53 2.15
2109 2214 2.879026 GTTCGAAAAGGGCTGAGTCTTT 59.121 45.455 0.00 0.00 35.01 2.52
2256 2364 5.300752 AGTGGAGCATTAATCTTATGACGG 58.699 41.667 0.00 0.00 0.00 4.79
2866 5022 6.128526 GCAGTAGAGCGTTGAGACTTAAAAAT 60.129 38.462 0.00 0.00 0.00 1.82
2925 5178 3.819368 TCACCAAACTGCAGAATGAGAA 58.181 40.909 23.35 4.48 39.69 2.87
2953 5208 4.473444 AGTGTGGGTTGATCTGAATGTTT 58.527 39.130 0.00 0.00 0.00 2.83
3005 5352 7.448748 AGGAATACATTTACACCAAACAGTC 57.551 36.000 0.00 0.00 0.00 3.51
3099 8352 6.492087 AGATCAAACGGAAAATTTTACCCAGA 59.508 34.615 7.58 1.79 0.00 3.86
3100 8353 6.687604 AGATCAAACGGAAAATTTTACCCAG 58.312 36.000 7.58 3.95 0.00 4.45
3101 8354 6.658188 AGATCAAACGGAAAATTTTACCCA 57.342 33.333 7.58 0.00 0.00 4.51
3102 8355 9.135843 CTTTAGATCAAACGGAAAATTTTACCC 57.864 33.333 7.58 3.29 0.00 3.69
3103 8356 8.644619 GCTTTAGATCAAACGGAAAATTTTACC 58.355 33.333 7.58 8.14 0.00 2.85
3104 8357 9.187455 TGCTTTAGATCAAACGGAAAATTTTAC 57.813 29.630 2.75 2.76 0.00 2.01
3105 8358 9.921637 ATGCTTTAGATCAAACGGAAAATTTTA 57.078 25.926 2.75 0.00 0.00 1.52
3106 8359 8.711457 CATGCTTTAGATCAAACGGAAAATTTT 58.289 29.630 2.28 2.28 0.00 1.82
3107 8360 7.148590 GCATGCTTTAGATCAAACGGAAAATTT 60.149 33.333 11.37 0.00 0.00 1.82
3108 8361 6.311200 GCATGCTTTAGATCAAACGGAAAATT 59.689 34.615 11.37 0.00 0.00 1.82
3109 8362 5.807011 GCATGCTTTAGATCAAACGGAAAAT 59.193 36.000 11.37 0.00 0.00 1.82
3110 8363 5.048083 AGCATGCTTTAGATCAAACGGAAAA 60.048 36.000 16.30 0.00 0.00 2.29
3111 8364 4.458989 AGCATGCTTTAGATCAAACGGAAA 59.541 37.500 16.30 0.00 0.00 3.13
3112 8365 4.009675 AGCATGCTTTAGATCAAACGGAA 58.990 39.130 16.30 0.00 0.00 4.30
3113 8366 3.609853 AGCATGCTTTAGATCAAACGGA 58.390 40.909 16.30 0.00 0.00 4.69
3114 8367 4.095483 AGAAGCATGCTTTAGATCAAACGG 59.905 41.667 32.36 0.00 36.26 4.44
3115 8368 5.227238 AGAAGCATGCTTTAGATCAAACG 57.773 39.130 32.36 0.00 36.26 3.60
3116 8369 5.063944 TCGAGAAGCATGCTTTAGATCAAAC 59.936 40.000 32.36 16.73 36.26 2.93
3117 8370 5.178061 TCGAGAAGCATGCTTTAGATCAAA 58.822 37.500 32.36 15.72 36.26 2.69
3118 8371 4.758688 TCGAGAAGCATGCTTTAGATCAA 58.241 39.130 32.36 12.42 36.26 2.57
3119 8372 4.142071 ACTCGAGAAGCATGCTTTAGATCA 60.142 41.667 32.36 14.31 36.26 2.92
3120 8373 4.367450 ACTCGAGAAGCATGCTTTAGATC 58.633 43.478 32.36 24.02 36.26 2.75
3121 8374 4.399004 ACTCGAGAAGCATGCTTTAGAT 57.601 40.909 32.36 19.01 36.26 1.98
3122 8375 3.876274 ACTCGAGAAGCATGCTTTAGA 57.124 42.857 32.36 26.66 36.26 2.10
3123 8376 3.928992 TCAACTCGAGAAGCATGCTTTAG 59.071 43.478 32.36 25.85 36.26 1.85
3124 8377 3.925379 TCAACTCGAGAAGCATGCTTTA 58.075 40.909 32.36 17.47 36.26 1.85
3125 8378 2.771089 TCAACTCGAGAAGCATGCTTT 58.229 42.857 32.36 21.67 36.26 3.51
3126 8379 2.462456 TCAACTCGAGAAGCATGCTT 57.538 45.000 32.41 32.41 39.23 3.91
3127 8380 2.093816 TCATCAACTCGAGAAGCATGCT 60.094 45.455 21.68 16.30 0.00 3.79
3128 8381 2.274437 TCATCAACTCGAGAAGCATGC 58.726 47.619 21.68 10.51 0.00 4.06
3129 8382 3.519579 ACTCATCAACTCGAGAAGCATG 58.480 45.455 21.68 14.45 33.33 4.06
3130 8383 3.733380 CGACTCATCAACTCGAGAAGCAT 60.733 47.826 21.68 2.23 33.33 3.79
3131 8384 2.414691 CGACTCATCAACTCGAGAAGCA 60.415 50.000 21.68 0.00 33.33 3.91
3132 8385 2.181205 CGACTCATCAACTCGAGAAGC 58.819 52.381 21.68 2.80 33.33 3.86
3133 8386 3.479505 ACGACTCATCAACTCGAGAAG 57.520 47.619 21.68 10.98 33.33 2.85
3134 8387 3.502595 AGAACGACTCATCAACTCGAGAA 59.497 43.478 21.68 4.29 33.33 2.87
3135 8388 3.075148 AGAACGACTCATCAACTCGAGA 58.925 45.455 21.68 0.00 33.33 4.04
3136 8389 3.167425 CAGAACGACTCATCAACTCGAG 58.833 50.000 11.84 11.84 35.30 4.04
3137 8390 2.095212 CCAGAACGACTCATCAACTCGA 60.095 50.000 0.00 0.00 0.00 4.04
3138 8391 2.254459 CCAGAACGACTCATCAACTCG 58.746 52.381 0.00 0.00 0.00 4.18
3139 8392 2.611518 CCCAGAACGACTCATCAACTC 58.388 52.381 0.00 0.00 0.00 3.01
3140 8393 1.276421 CCCCAGAACGACTCATCAACT 59.724 52.381 0.00 0.00 0.00 3.16
3141 8394 1.002087 ACCCCAGAACGACTCATCAAC 59.998 52.381 0.00 0.00 0.00 3.18
3142 8395 1.348064 ACCCCAGAACGACTCATCAA 58.652 50.000 0.00 0.00 0.00 2.57
3143 8396 2.100197 CTACCCCAGAACGACTCATCA 58.900 52.381 0.00 0.00 0.00 3.07
3144 8397 1.202428 GCTACCCCAGAACGACTCATC 60.202 57.143 0.00 0.00 0.00 2.92
3145 8398 0.824759 GCTACCCCAGAACGACTCAT 59.175 55.000 0.00 0.00 0.00 2.90
3146 8399 0.541063 TGCTACCCCAGAACGACTCA 60.541 55.000 0.00 0.00 0.00 3.41
3147 8400 0.606604 TTGCTACCCCAGAACGACTC 59.393 55.000 0.00 0.00 0.00 3.36
3148 8401 0.320697 GTTGCTACCCCAGAACGACT 59.679 55.000 0.00 0.00 0.00 4.18
3149 8402 0.320697 AGTTGCTACCCCAGAACGAC 59.679 55.000 0.00 0.00 0.00 4.34
3150 8403 0.606604 GAGTTGCTACCCCAGAACGA 59.393 55.000 0.00 0.00 0.00 3.85
3151 8404 0.736325 CGAGTTGCTACCCCAGAACG 60.736 60.000 0.00 0.00 0.00 3.95
3152 8405 0.391263 CCGAGTTGCTACCCCAGAAC 60.391 60.000 0.00 0.00 0.00 3.01
3153 8406 0.543410 TCCGAGTTGCTACCCCAGAA 60.543 55.000 0.00 0.00 0.00 3.02
3154 8407 0.543410 TTCCGAGTTGCTACCCCAGA 60.543 55.000 0.00 0.00 0.00 3.86
3155 8408 0.323629 TTTCCGAGTTGCTACCCCAG 59.676 55.000 0.00 0.00 0.00 4.45
3156 8409 0.766131 TTTTCCGAGTTGCTACCCCA 59.234 50.000 0.00 0.00 0.00 4.96
3157 8410 1.810755 CTTTTTCCGAGTTGCTACCCC 59.189 52.381 0.00 0.00 0.00 4.95
3158 8411 2.483106 GACTTTTTCCGAGTTGCTACCC 59.517 50.000 0.00 0.00 0.00 3.69
3159 8412 2.157085 CGACTTTTTCCGAGTTGCTACC 59.843 50.000 0.00 0.00 0.00 3.18
3160 8413 3.054878 TCGACTTTTTCCGAGTTGCTAC 58.945 45.455 0.00 0.00 0.00 3.58
3161 8414 3.314553 CTCGACTTTTTCCGAGTTGCTA 58.685 45.455 0.00 0.00 44.99 3.49
3162 8415 2.135933 CTCGACTTTTTCCGAGTTGCT 58.864 47.619 0.00 0.00 44.99 3.91
3163 8416 2.579013 CTCGACTTTTTCCGAGTTGC 57.421 50.000 0.00 0.00 44.99 4.17
3168 8421 0.949105 GCAGGCTCGACTTTTTCCGA 60.949 55.000 0.00 0.00 0.00 4.55
3169 8422 1.227999 TGCAGGCTCGACTTTTTCCG 61.228 55.000 0.00 0.00 0.00 4.30
3170 8423 0.519077 CTGCAGGCTCGACTTTTTCC 59.481 55.000 5.57 0.00 0.00 3.13
3171 8424 1.230324 ACTGCAGGCTCGACTTTTTC 58.770 50.000 19.93 0.00 0.00 2.29
3172 8425 1.334869 CAACTGCAGGCTCGACTTTTT 59.665 47.619 19.93 0.00 0.00 1.94
3173 8426 0.947244 CAACTGCAGGCTCGACTTTT 59.053 50.000 19.93 0.00 0.00 2.27
3174 8427 1.510480 GCAACTGCAGGCTCGACTTT 61.510 55.000 19.93 0.00 41.59 2.66
3175 8428 1.963338 GCAACTGCAGGCTCGACTT 60.963 57.895 19.93 0.00 41.59 3.01
3176 8429 2.358003 GCAACTGCAGGCTCGACT 60.358 61.111 19.93 0.00 41.59 4.18
3177 8430 3.782244 CGCAACTGCAGGCTCGAC 61.782 66.667 19.93 0.00 42.21 4.20
3178 8431 3.989787 TCGCAACTGCAGGCTCGA 61.990 61.111 19.93 18.82 42.21 4.04
3179 8432 2.819117 TAGTCGCAACTGCAGGCTCG 62.819 60.000 19.93 16.84 42.21 5.03
3180 8433 1.079819 TAGTCGCAACTGCAGGCTC 60.080 57.895 19.93 8.48 42.21 4.70
3181 8434 1.079543 CTAGTCGCAACTGCAGGCT 60.080 57.895 19.93 0.99 42.21 4.58
3182 8435 1.355066 GACTAGTCGCAACTGCAGGC 61.355 60.000 19.93 11.86 42.21 4.85
3183 8436 1.073216 CGACTAGTCGCAACTGCAGG 61.073 60.000 30.44 1.57 46.50 4.85
3184 8437 2.353807 CGACTAGTCGCAACTGCAG 58.646 57.895 30.44 13.48 46.50 4.41
3185 8438 4.552278 CGACTAGTCGCAACTGCA 57.448 55.556 30.44 0.00 46.50 4.41
3192 8445 4.403331 GACTCGAGTCACGACTAGTCGC 62.403 59.091 38.10 24.86 46.45 5.19
3193 8446 1.321148 GACTCGAGTCACGACTAGTCG 59.679 57.143 36.93 36.93 46.45 4.18
3205 8458 1.465387 GTGTCGACTCATGACTCGAGT 59.535 52.381 22.57 20.18 46.32 4.18
3206 8459 1.735018 AGTGTCGACTCATGACTCGAG 59.265 52.381 22.57 11.84 39.51 4.04
3207 8460 1.809684 AGTGTCGACTCATGACTCGA 58.190 50.000 19.46 19.46 37.26 4.04
3208 8461 3.741805 TTAGTGTCGACTCATGACTCG 57.258 47.619 17.92 15.98 37.26 4.18
3209 8462 5.049398 ACTTTAGTGTCGACTCATGACTC 57.951 43.478 17.92 0.00 37.26 3.36
3210 8463 5.009710 TCAACTTTAGTGTCGACTCATGACT 59.990 40.000 17.92 13.44 37.26 3.41
3211 8464 5.220381 TCAACTTTAGTGTCGACTCATGAC 58.780 41.667 17.92 5.97 36.88 3.06
3212 8465 5.009710 ACTCAACTTTAGTGTCGACTCATGA 59.990 40.000 17.92 10.45 33.21 3.07
3213 8466 5.223382 ACTCAACTTTAGTGTCGACTCATG 58.777 41.667 17.92 7.26 33.21 3.07
3214 8467 5.455056 ACTCAACTTTAGTGTCGACTCAT 57.545 39.130 17.92 5.07 33.21 2.90
3215 8468 4.261489 GGACTCAACTTTAGTGTCGACTCA 60.261 45.833 17.92 1.57 33.21 3.41
3216 8469 4.228317 GGACTCAACTTTAGTGTCGACTC 58.772 47.826 17.92 13.63 33.21 3.36
3217 8470 3.304525 CGGACTCAACTTTAGTGTCGACT 60.305 47.826 17.92 0.00 36.07 4.18
3218 8471 2.978489 CGGACTCAACTTTAGTGTCGAC 59.022 50.000 9.11 9.11 32.01 4.20
3219 8472 2.880268 TCGGACTCAACTTTAGTGTCGA 59.120 45.455 0.00 0.00 32.01 4.20
3220 8473 2.978489 GTCGGACTCAACTTTAGTGTCG 59.022 50.000 0.00 0.00 32.01 4.35
3221 8474 3.973657 TGTCGGACTCAACTTTAGTGTC 58.026 45.455 9.88 0.00 0.00 3.67
3222 8475 4.602340 ATGTCGGACTCAACTTTAGTGT 57.398 40.909 9.88 0.00 0.00 3.55
3223 8476 5.924475 AAATGTCGGACTCAACTTTAGTG 57.076 39.130 9.88 0.00 0.00 2.74
3224 8477 6.937436 AAAAATGTCGGACTCAACTTTAGT 57.063 33.333 9.88 0.00 0.00 2.24
3263 8516 1.988467 CACGTGACTAGTCGTCGACTA 59.012 52.381 31.81 28.43 45.87 2.59
3264 8517 0.788995 CACGTGACTAGTCGTCGACT 59.211 55.000 31.81 29.25 45.87 4.18
3265 8518 0.786581 TCACGTGACTAGTCGTCGAC 59.213 55.000 31.81 17.70 45.87 4.20
3266 8519 0.786581 GTCACGTGACTAGTCGTCGA 59.213 55.000 35.51 18.53 45.87 4.20
3267 8520 3.271040 GTCACGTGACTAGTCGTCG 57.729 57.895 35.51 26.93 45.87 5.12
3276 8529 4.744570 TCATGGATTTCTAGTCACGTGAC 58.255 43.478 35.83 35.83 45.08 3.67
3277 8530 5.360999 AGATCATGGATTTCTAGTCACGTGA 59.639 40.000 15.76 15.76 0.00 4.35
3278 8531 5.595885 AGATCATGGATTTCTAGTCACGTG 58.404 41.667 9.94 9.94 0.00 4.49
3279 8532 5.860941 AGATCATGGATTTCTAGTCACGT 57.139 39.130 0.00 0.00 0.00 4.49
3280 8533 7.095857 GCTTTAGATCATGGATTTCTAGTCACG 60.096 40.741 0.00 0.00 0.00 4.35
3281 8534 7.172361 GGCTTTAGATCATGGATTTCTAGTCAC 59.828 40.741 0.00 0.00 0.00 3.67
3282 8535 7.147497 TGGCTTTAGATCATGGATTTCTAGTCA 60.147 37.037 0.00 0.00 0.00 3.41
3283 8536 7.220030 TGGCTTTAGATCATGGATTTCTAGTC 58.780 38.462 0.00 0.00 0.00 2.59
3284 8537 7.141758 TGGCTTTAGATCATGGATTTCTAGT 57.858 36.000 0.00 0.00 0.00 2.57
3285 8538 7.935755 TCTTGGCTTTAGATCATGGATTTCTAG 59.064 37.037 0.00 0.00 0.00 2.43
3286 8539 7.805163 TCTTGGCTTTAGATCATGGATTTCTA 58.195 34.615 0.00 0.00 0.00 2.10
3287 8540 6.666678 TCTTGGCTTTAGATCATGGATTTCT 58.333 36.000 0.00 0.00 0.00 2.52
3288 8541 6.949352 TCTTGGCTTTAGATCATGGATTTC 57.051 37.500 0.00 0.00 0.00 2.17
3289 8542 6.239232 GCATCTTGGCTTTAGATCATGGATTT 60.239 38.462 0.00 0.00 30.05 2.17
3290 8543 5.243283 GCATCTTGGCTTTAGATCATGGATT 59.757 40.000 0.00 0.00 30.05 3.01
3291 8544 4.765856 GCATCTTGGCTTTAGATCATGGAT 59.234 41.667 0.00 0.00 30.05 3.41
3292 8545 4.139786 GCATCTTGGCTTTAGATCATGGA 58.860 43.478 0.00 0.00 30.05 3.41
3293 8546 4.142790 AGCATCTTGGCTTTAGATCATGG 58.857 43.478 0.00 0.00 42.71 3.66
3294 8547 4.820173 TGAGCATCTTGGCTTTAGATCATG 59.180 41.667 0.00 0.00 45.99 3.07
3295 8548 5.045012 TGAGCATCTTGGCTTTAGATCAT 57.955 39.130 0.00 0.00 45.99 2.45
3296 8549 4.492494 TGAGCATCTTGGCTTTAGATCA 57.508 40.909 0.00 0.00 45.99 2.92
3297 8550 4.637534 TGTTGAGCATCTTGGCTTTAGATC 59.362 41.667 0.00 0.00 45.99 2.75
3298 8551 4.592942 TGTTGAGCATCTTGGCTTTAGAT 58.407 39.130 0.00 0.00 45.99 1.98
3532 9190 3.771216 AGCAAGATTTGGACCAGAATGT 58.229 40.909 0.00 0.00 0.00 2.71
3849 9609 7.787725 AGAACCTAAATACGCAATTTCCTAG 57.212 36.000 0.00 0.00 38.71 3.02
3949 9731 1.604593 CCAACACAAGGCCAGGGAG 60.605 63.158 5.01 0.00 0.00 4.30
4479 12111 1.699730 TCTGAAACTCTGGGTCGTGA 58.300 50.000 0.00 0.00 0.00 4.35
4536 12168 2.679837 CTGCATAACACCATCTGGACAC 59.320 50.000 2.55 0.00 38.94 3.67
4691 12354 0.179001 ACGCTAGCAAAACCCACCTT 60.179 50.000 16.45 0.00 0.00 3.50
4702 12369 3.525619 CTTGTGGGTAACGCTAGCA 57.474 52.632 16.45 0.00 37.60 3.49
4714 12381 3.964909 GTTGGAAACTAACTGCTTGTGG 58.035 45.455 0.00 0.00 45.32 4.17
4753 12435 2.467826 CGGGTAGGACCTCGACGTC 61.468 68.421 5.18 5.18 38.64 4.34
4755 12437 0.744414 TAACGGGTAGGACCTCGACG 60.744 60.000 7.99 8.72 38.64 5.12
4796 12479 7.030165 CACGCTCATCGGAATATCTTAACTAT 58.970 38.462 0.00 0.00 43.86 2.12
4797 12480 6.379386 CACGCTCATCGGAATATCTTAACTA 58.621 40.000 0.00 0.00 43.86 2.24
4819 12502 6.964934 CCAATAATAAACAGACTAAACGGCAC 59.035 38.462 0.00 0.00 0.00 5.01
4820 12503 6.879993 TCCAATAATAAACAGACTAAACGGCA 59.120 34.615 0.00 0.00 0.00 5.69
4821 12504 7.311364 TCCAATAATAAACAGACTAAACGGC 57.689 36.000 0.00 0.00 0.00 5.68
4822 12505 8.889717 ACATCCAATAATAAACAGACTAAACGG 58.110 33.333 0.00 0.00 0.00 4.44
4823 12506 9.702726 CACATCCAATAATAAACAGACTAAACG 57.297 33.333 0.00 0.00 0.00 3.60
4824 12507 9.503427 GCACATCCAATAATAAACAGACTAAAC 57.497 33.333 0.00 0.00 0.00 2.01
4825 12508 9.461312 AGCACATCCAATAATAAACAGACTAAA 57.539 29.630 0.00 0.00 0.00 1.85
4826 12509 8.892723 CAGCACATCCAATAATAAACAGACTAA 58.107 33.333 0.00 0.00 0.00 2.24
4827 12510 8.264347 TCAGCACATCCAATAATAAACAGACTA 58.736 33.333 0.00 0.00 0.00 2.59
4828 12511 7.112122 TCAGCACATCCAATAATAAACAGACT 58.888 34.615 0.00 0.00 0.00 3.24
4829 12512 7.280876 TCTCAGCACATCCAATAATAAACAGAC 59.719 37.037 0.00 0.00 0.00 3.51
4830 12513 7.337938 TCTCAGCACATCCAATAATAAACAGA 58.662 34.615 0.00 0.00 0.00 3.41
4831 12514 7.281774 ACTCTCAGCACATCCAATAATAAACAG 59.718 37.037 0.00 0.00 0.00 3.16
4832 12515 7.112122 ACTCTCAGCACATCCAATAATAAACA 58.888 34.615 0.00 0.00 0.00 2.83
4833 12516 7.559590 ACTCTCAGCACATCCAATAATAAAC 57.440 36.000 0.00 0.00 0.00 2.01
4834 12517 9.851686 AATACTCTCAGCACATCCAATAATAAA 57.148 29.630 0.00 0.00 0.00 1.40
4835 12518 9.494271 GAATACTCTCAGCACATCCAATAATAA 57.506 33.333 0.00 0.00 0.00 1.40
4836 12519 8.874156 AGAATACTCTCAGCACATCCAATAATA 58.126 33.333 0.00 0.00 0.00 0.98
4837 12520 7.660617 CAGAATACTCTCAGCACATCCAATAAT 59.339 37.037 0.00 0.00 0.00 1.28
4838 12521 6.988580 CAGAATACTCTCAGCACATCCAATAA 59.011 38.462 0.00 0.00 0.00 1.40
4839 12522 6.324770 TCAGAATACTCTCAGCACATCCAATA 59.675 38.462 0.00 0.00 0.00 1.90
4840 12523 5.129980 TCAGAATACTCTCAGCACATCCAAT 59.870 40.000 0.00 0.00 0.00 3.16
4841 12524 4.467438 TCAGAATACTCTCAGCACATCCAA 59.533 41.667 0.00 0.00 0.00 3.53
4842 12525 4.026052 TCAGAATACTCTCAGCACATCCA 58.974 43.478 0.00 0.00 0.00 3.41
4843 12526 4.662468 TCAGAATACTCTCAGCACATCC 57.338 45.455 0.00 0.00 0.00 3.51
4844 12527 5.050227 GCATTCAGAATACTCTCAGCACATC 60.050 44.000 0.00 0.00 0.00 3.06
4845 12528 4.815308 GCATTCAGAATACTCTCAGCACAT 59.185 41.667 0.00 0.00 0.00 3.21
4846 12529 4.186926 GCATTCAGAATACTCTCAGCACA 58.813 43.478 0.00 0.00 0.00 4.57
4847 12530 4.186926 TGCATTCAGAATACTCTCAGCAC 58.813 43.478 0.00 0.00 0.00 4.40
4848 12531 4.161001 TCTGCATTCAGAATACTCTCAGCA 59.839 41.667 0.00 0.00 45.69 4.41
4849 12532 4.691175 TCTGCATTCAGAATACTCTCAGC 58.309 43.478 0.00 0.00 45.69 4.26
4868 12551 3.291585 GTGAACGAACTTGCAACATCTG 58.708 45.455 0.00 0.00 0.00 2.90
4869 12552 2.290641 GGTGAACGAACTTGCAACATCT 59.709 45.455 0.00 0.00 0.00 2.90
4870 12553 2.032799 TGGTGAACGAACTTGCAACATC 59.967 45.455 0.00 0.00 0.00 3.06
4871 12554 2.020720 TGGTGAACGAACTTGCAACAT 58.979 42.857 0.00 0.00 0.00 2.71
4872 12555 1.454201 TGGTGAACGAACTTGCAACA 58.546 45.000 0.00 0.00 0.00 3.33
4873 12556 2.774439 ATGGTGAACGAACTTGCAAC 57.226 45.000 0.00 0.00 0.00 4.17
4874 12557 3.304391 GCTAATGGTGAACGAACTTGCAA 60.304 43.478 0.00 0.00 0.00 4.08
4875 12558 2.225491 GCTAATGGTGAACGAACTTGCA 59.775 45.455 0.00 0.00 0.00 4.08
4876 12559 2.484264 AGCTAATGGTGAACGAACTTGC 59.516 45.455 0.00 0.00 0.00 4.01
4877 12560 7.534085 TTATAGCTAATGGTGAACGAACTTG 57.466 36.000 0.00 0.00 0.00 3.16
4878 12561 8.732746 AATTATAGCTAATGGTGAACGAACTT 57.267 30.769 0.00 0.00 0.00 2.66
4879 12562 8.732746 AAATTATAGCTAATGGTGAACGAACT 57.267 30.769 0.00 0.00 0.00 3.01
4880 12563 8.609176 TGAAATTATAGCTAATGGTGAACGAAC 58.391 33.333 0.00 0.00 0.00 3.95
4881 12564 8.609176 GTGAAATTATAGCTAATGGTGAACGAA 58.391 33.333 0.00 0.00 0.00 3.85
4882 12565 7.766738 TGTGAAATTATAGCTAATGGTGAACGA 59.233 33.333 0.00 0.00 0.00 3.85
4883 12566 7.915508 TGTGAAATTATAGCTAATGGTGAACG 58.084 34.615 0.00 0.00 0.00 3.95
4886 12569 8.405531 GCTTTGTGAAATTATAGCTAATGGTGA 58.594 33.333 0.00 0.00 0.00 4.02
4887 12570 8.190122 TGCTTTGTGAAATTATAGCTAATGGTG 58.810 33.333 0.00 0.00 0.00 4.17
4888 12571 8.292444 TGCTTTGTGAAATTATAGCTAATGGT 57.708 30.769 0.00 0.00 0.00 3.55
4889 12572 9.241317 CTTGCTTTGTGAAATTATAGCTAATGG 57.759 33.333 0.00 0.00 0.00 3.16
4890 12573 9.793252 ACTTGCTTTGTGAAATTATAGCTAATG 57.207 29.630 0.00 0.00 0.00 1.90
4900 12583 8.947055 ACAGATTAAACTTGCTTTGTGAAATT 57.053 26.923 0.00 0.00 0.00 1.82
4901 12584 8.947055 AACAGATTAAACTTGCTTTGTGAAAT 57.053 26.923 0.00 0.00 0.00 2.17
4902 12585 8.770438 AAACAGATTAAACTTGCTTTGTGAAA 57.230 26.923 0.00 0.00 0.00 2.69
4903 12586 8.031864 TGAAACAGATTAAACTTGCTTTGTGAA 58.968 29.630 0.00 0.00 0.00 3.18
4904 12587 7.542890 TGAAACAGATTAAACTTGCTTTGTGA 58.457 30.769 0.00 0.00 0.00 3.58
4905 12588 7.754069 TGAAACAGATTAAACTTGCTTTGTG 57.246 32.000 0.00 0.00 0.00 3.33
4906 12589 7.981225 ACATGAAACAGATTAAACTTGCTTTGT 59.019 29.630 0.00 0.00 0.00 2.83
4907 12590 8.356533 ACATGAAACAGATTAAACTTGCTTTG 57.643 30.769 0.00 0.00 0.00 2.77
4908 12591 8.947055 AACATGAAACAGATTAAACTTGCTTT 57.053 26.923 0.00 0.00 0.00 3.51
4918 12601 9.214957 ACAGACGATTTAACATGAAACAGATTA 57.785 29.630 0.00 0.00 0.00 1.75
4919 12602 8.099364 ACAGACGATTTAACATGAAACAGATT 57.901 30.769 0.00 0.00 0.00 2.40
4920 12603 7.148407 GGACAGACGATTTAACATGAAACAGAT 60.148 37.037 0.00 0.00 0.00 2.90
4921 12604 6.147164 GGACAGACGATTTAACATGAAACAGA 59.853 38.462 0.00 0.00 0.00 3.41
4922 12605 6.307155 GGACAGACGATTTAACATGAAACAG 58.693 40.000 0.00 0.00 0.00 3.16
4923 12606 5.107259 CGGACAGACGATTTAACATGAAACA 60.107 40.000 0.00 0.00 35.47 2.83
4924 12607 5.107220 ACGGACAGACGATTTAACATGAAAC 60.107 40.000 0.00 0.00 37.61 2.78
4925 12608 4.992319 ACGGACAGACGATTTAACATGAAA 59.008 37.500 0.00 0.00 37.61 2.69
4926 12609 4.562082 ACGGACAGACGATTTAACATGAA 58.438 39.130 0.00 0.00 37.61 2.57
4927 12610 4.182693 ACGGACAGACGATTTAACATGA 57.817 40.909 0.00 0.00 37.61 3.07
4928 12611 4.921470 AACGGACAGACGATTTAACATG 57.079 40.909 0.00 0.00 37.61 3.21
4929 12612 6.334989 TCATAACGGACAGACGATTTAACAT 58.665 36.000 0.00 0.00 37.61 2.71
4930 12613 5.712004 TCATAACGGACAGACGATTTAACA 58.288 37.500 0.00 0.00 37.61 2.41
4931 12614 6.474427 TCATCATAACGGACAGACGATTTAAC 59.526 38.462 0.00 0.00 37.61 2.01
4932 12615 6.566141 TCATCATAACGGACAGACGATTTAA 58.434 36.000 0.00 0.00 37.61 1.52
4933 12616 6.139048 TCATCATAACGGACAGACGATTTA 57.861 37.500 0.00 0.00 37.61 1.40
4934 12617 5.006153 TCATCATAACGGACAGACGATTT 57.994 39.130 0.00 0.00 37.61 2.17
4935 12618 4.499865 CCTCATCATAACGGACAGACGATT 60.500 45.833 0.00 0.00 37.61 3.34
4936 12619 3.004839 CCTCATCATAACGGACAGACGAT 59.995 47.826 0.00 0.00 37.61 3.73
4937 12620 2.357952 CCTCATCATAACGGACAGACGA 59.642 50.000 0.00 0.00 37.61 4.20
4938 12621 2.357952 TCCTCATCATAACGGACAGACG 59.642 50.000 0.00 0.00 40.31 4.18
4939 12622 4.038042 TCATCCTCATCATAACGGACAGAC 59.962 45.833 0.00 0.00 0.00 3.51
4940 12623 4.215109 TCATCCTCATCATAACGGACAGA 58.785 43.478 0.00 0.00 0.00 3.41
4941 12624 4.590850 TCATCCTCATCATAACGGACAG 57.409 45.455 0.00 0.00 0.00 3.51
4942 12625 6.664428 TTATCATCCTCATCATAACGGACA 57.336 37.500 0.00 0.00 0.00 4.02
4943 12626 9.823647 ATTATTATCATCCTCATCATAACGGAC 57.176 33.333 0.00 0.00 0.00 4.79
4968 12651 9.965824 GAACATTCAATTTCGTGGGATTATTAT 57.034 29.630 0.00 0.00 0.00 1.28
4969 12652 9.184523 AGAACATTCAATTTCGTGGGATTATTA 57.815 29.630 0.00 0.00 0.00 0.98
4970 12653 8.066612 AGAACATTCAATTTCGTGGGATTATT 57.933 30.769 0.00 0.00 0.00 1.40
4971 12654 7.645058 AGAACATTCAATTTCGTGGGATTAT 57.355 32.000 0.00 0.00 0.00 1.28
4972 12655 7.608376 TGTAGAACATTCAATTTCGTGGGATTA 59.392 33.333 0.00 0.00 0.00 1.75
4973 12656 5.982890 AGAACATTCAATTTCGTGGGATT 57.017 34.783 0.00 0.00 0.00 3.01
4974 12657 5.943416 TGTAGAACATTCAATTTCGTGGGAT 59.057 36.000 0.00 0.00 0.00 3.85
5145 12828 8.154649 AGATTCTGTTACGAAACTTCATTGTT 57.845 30.769 0.00 0.00 36.51 2.83
5259 12942 5.118990 TGATATCTTGCTTGCTAAGTGTCC 58.881 41.667 3.98 0.00 0.00 4.02
5274 12957 8.330466 TCAACCGTACACAAATTTGATATCTT 57.670 30.769 24.64 0.00 0.00 2.40
5279 12962 6.212955 CCTTTCAACCGTACACAAATTTGAT 58.787 36.000 24.64 13.91 0.00 2.57
5306 12989 8.472413 CATGGAGTGGAATACATCAATTCTTTT 58.528 33.333 0.00 0.00 36.34 2.27
5387 13070 4.550076 TCAAAATGAATGGCCCGAAATT 57.450 36.364 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.