Multiple sequence alignment - TraesCS5B01G249500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G249500 chr5B 100.000 8680 0 0 1 8680 432148576 432157255 0.000000e+00 16030
1 TraesCS5B01G249500 chr5A 94.631 3762 151 16 1995 5740 467373728 467377454 0.000000e+00 5781
2 TraesCS5B01G249500 chr5A 93.120 2689 114 44 5738 8367 467377557 467380233 0.000000e+00 3875
3 TraesCS5B01G249500 chr5A 86.394 1367 66 47 8 1339 467371178 467372459 0.000000e+00 1384
4 TraesCS5B01G249500 chr5A 92.949 468 18 8 1403 1856 467372789 467373255 0.000000e+00 667
5 TraesCS5B01G249500 chr5A 89.697 165 12 3 8395 8559 467380232 467380391 1.140000e-48 206
6 TraesCS5B01G249500 chr5D 95.937 3126 110 12 2619 5740 365690193 365693305 0.000000e+00 5053
7 TraesCS5B01G249500 chr5D 92.712 1578 72 18 1067 2625 365687554 365689107 0.000000e+00 2237
8 TraesCS5B01G249500 chr5D 95.393 1411 41 6 5738 7144 365693408 365694798 0.000000e+00 2224
9 TraesCS5B01G249500 chr5D 89.176 1044 60 23 7395 8399 365695646 365696675 0.000000e+00 1253
10 TraesCS5B01G249500 chr5D 95.220 523 15 7 5 526 365686481 365686994 0.000000e+00 819
11 TraesCS5B01G249500 chr5D 91.925 322 23 2 7145 7464 365694833 365695153 1.720000e-121 448
12 TraesCS5B01G249500 chr5D 83.838 297 33 11 724 1019 365687274 365687556 1.440000e-67 268
13 TraesCS5B01G249500 chr5D 90.654 107 7 1 8441 8547 365696684 365696787 1.170000e-28 139
14 TraesCS5B01G249500 chr7D 95.455 132 6 0 8549 8680 182427911 182428042 2.460000e-50 211
15 TraesCS5B01G249500 chr2A 93.130 131 9 0 8550 8680 579968636 579968766 8.890000e-45 193
16 TraesCS5B01G249500 chr4B 90.840 131 12 0 8550 8680 383651150 383651020 8.960000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G249500 chr5B 432148576 432157255 8679 False 16030.000 16030 100.000000 1 8680 1 chr5B.!!$F1 8679
1 TraesCS5B01G249500 chr5A 467371178 467380391 9213 False 2382.600 5781 91.358200 8 8559 5 chr5A.!!$F1 8551
2 TraesCS5B01G249500 chr5D 365686481 365696787 10306 False 1555.125 5053 91.856875 5 8547 8 chr5D.!!$F1 8542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 739 0.299597 CGCGTGCCGTATAAAGGTTC 59.700 55.0 0.00 0.00 0.00 3.62 F
1027 1147 0.173935 CCAAGGTACGTACGATGGCA 59.826 55.0 25.90 0.00 0.00 4.92 F
1498 1894 0.321996 GACCGAGCTGTTCTTCCCTT 59.678 55.0 0.00 0.00 0.00 3.95 F
2654 4578 0.323908 AGAGAGGACGAGGGACAAGG 60.324 60.0 0.00 0.00 0.00 3.61 F
3348 5279 0.178891 AGTGGAAAGGGAGGAGCTGA 60.179 55.0 0.00 0.00 0.00 4.26 F
4000 5931 0.108186 CAAGGCGTACATGGAGCTCA 60.108 55.0 17.19 1.87 0.00 4.26 F
4539 6470 0.179009 GCCATCTTGCTGAGGCCATA 60.179 55.0 5.01 0.00 41.25 2.74 F
5001 6932 0.755327 GGGGTGTCACCAAAGCAACT 60.755 55.0 23.48 0.00 41.02 3.16 F
6630 8684 0.461339 GATGATAACCACACCGCGGT 60.461 55.0 28.70 28.70 38.85 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2632 4556 0.609406 TGTCCCTCGTCCTCTCTGTG 60.609 60.000 0.00 0.0 0.00 3.66 R
2664 4588 1.000270 ATTATGCCGGCCCACACAA 60.000 52.632 26.77 2.6 0.00 3.33 R
3279 5210 0.250553 CCCCCGCTGTGAGTACAAAA 60.251 55.000 0.00 0.0 36.14 2.44 R
3893 5824 0.036010 CGCTTCCAAGGGACTGTGAT 60.036 55.000 0.00 0.0 40.86 3.06 R
4794 6725 0.035439 CGTGAAGTAAGGCACCCCAT 60.035 55.000 0.00 0.0 0.00 4.00 R
5311 7242 0.172578 CAGCGGATCTCGTGTAACCA 59.827 55.000 5.66 0.0 41.72 3.67 R
5411 7343 1.133976 GCATCCACCCTCACAGCTAAT 60.134 52.381 0.00 0.0 0.00 1.73 R
6633 8687 1.002201 CCCCTGAGATAGCTGCAGATG 59.998 57.143 20.43 0.0 0.00 2.90 R
8594 11315 0.035439 TGGCCTCGATTTTCTGGGTC 60.035 55.000 3.32 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.079405 GGATCGGCGGTGAGACAAA 60.079 57.895 7.21 0.00 0.00 2.83
33 34 2.147958 GGCGGTGAGACAAACAACATA 58.852 47.619 0.00 0.00 0.00 2.29
143 148 6.967199 GCATGTTCAGTATAGTAAGTTTTGCC 59.033 38.462 0.00 0.00 0.00 4.52
204 218 4.864247 CCAATAATTTTGTACTGCCACTGC 59.136 41.667 0.00 0.00 38.26 4.40
219 233 1.011904 CTGCCGCGTGAATTCGATG 60.012 57.895 4.92 0.00 0.00 3.84
228 242 2.359214 CGTGAATTCGATGGGAGAGAGA 59.641 50.000 0.04 0.00 0.00 3.10
268 282 1.755008 GGAGACGGTGGAGAGAGGG 60.755 68.421 0.00 0.00 0.00 4.30
269 283 1.755008 GAGACGGTGGAGAGAGGGG 60.755 68.421 0.00 0.00 0.00 4.79
270 284 2.037527 GACGGTGGAGAGAGGGGT 59.962 66.667 0.00 0.00 0.00 4.95
278 294 1.687493 GAGAGAGGGGTGGAGTGGG 60.687 68.421 0.00 0.00 0.00 4.61
493 514 2.933834 ACCCACCACCACTAGCCC 60.934 66.667 0.00 0.00 0.00 5.19
494 515 3.728373 CCCACCACCACTAGCCCC 61.728 72.222 0.00 0.00 0.00 5.80
495 516 4.096003 CCACCACCACTAGCCCCG 62.096 72.222 0.00 0.00 0.00 5.73
496 517 4.778143 CACCACCACTAGCCCCGC 62.778 72.222 0.00 0.00 0.00 6.13
540 561 4.473520 CCACGCGCCAATCTCCCT 62.474 66.667 5.73 0.00 0.00 4.20
627 648 3.444737 GCGCCAGTAGCCTAGCTA 58.555 61.111 0.00 0.00 40.44 3.32
628 649 1.287503 GCGCCAGTAGCCTAGCTAG 59.712 63.158 14.20 14.20 42.11 3.42
630 651 1.456196 CGCCAGTAGCCTAGCTAGCA 61.456 60.000 18.83 1.89 42.11 3.49
633 654 1.269309 CCAGTAGCCTAGCTAGCAACG 60.269 57.143 18.83 3.95 42.11 4.10
713 736 2.624264 GCGCGTGCCGTATAAAGG 59.376 61.111 10.56 0.00 39.71 3.11
714 737 2.169146 GCGCGTGCCGTATAAAGGT 61.169 57.895 10.56 0.00 39.71 3.50
716 739 0.299597 CGCGTGCCGTATAAAGGTTC 59.700 55.000 0.00 0.00 0.00 3.62
802 910 2.864097 GCGTGTGCAAAGAGAGAGAGAA 60.864 50.000 0.00 0.00 42.15 2.87
810 918 7.039434 TGTGCAAAGAGAGAGAGAATTAAGAGA 60.039 37.037 0.00 0.00 0.00 3.10
820 928 7.283329 AGAGAGAATTAAGAGAGGAGAGAGAC 58.717 42.308 0.00 0.00 0.00 3.36
916 1036 1.153349 GTGCTCGGGGAGGATCAAC 60.153 63.158 0.00 0.00 36.25 3.18
939 1059 2.104331 CGGCGATCGTTACCAGCT 59.896 61.111 17.81 0.00 0.00 4.24
942 1062 1.146358 GGCGATCGTTACCAGCTGAC 61.146 60.000 17.39 4.40 0.00 3.51
948 1068 1.068748 TCGTTACCAGCTGACGAGAAC 60.069 52.381 21.19 13.17 40.46 3.01
990 1110 1.213013 GCGACTGACCGACTGATGT 59.787 57.895 0.00 0.00 0.00 3.06
1021 1141 0.529119 GGGCATCCAAGGTACGTACG 60.529 60.000 18.98 15.01 0.00 3.67
1023 1143 1.068127 GGCATCCAAGGTACGTACGAT 59.932 52.381 24.41 12.79 0.00 3.73
1027 1147 0.173935 CCAAGGTACGTACGATGGCA 59.826 55.000 25.90 0.00 0.00 4.92
1028 1148 1.274596 CAAGGTACGTACGATGGCAC 58.725 55.000 24.41 10.67 0.00 5.01
1124 1244 1.457604 CGGGGATCCATGGCTTCAT 59.542 57.895 15.23 0.00 0.00 2.57
1164 1284 0.942410 GGAAAGAGCGTGCGTGTGTA 60.942 55.000 0.00 0.00 0.00 2.90
1179 1299 1.271871 TGTGTATGCAGGGAACAAGGG 60.272 52.381 0.00 0.00 0.00 3.95
1258 1384 1.987704 CTCTCCAGCTCCACGACTCG 61.988 65.000 0.00 0.00 0.00 4.18
1317 1445 1.521681 CAATTCCGCGTCTCCTCCC 60.522 63.158 4.92 0.00 0.00 4.30
1342 1472 0.324738 TCTCTGATCGCAACCTCCCT 60.325 55.000 0.00 0.00 0.00 4.20
1346 1476 0.324738 TGATCGCAACCTCCCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
1350 1487 1.306568 GCAACCTCCCTCTCTCCCT 60.307 63.158 0.00 0.00 0.00 4.20
1375 1512 3.305881 GCGGCGGATTAATTCCTAGTAGT 60.306 47.826 9.78 0.00 42.99 2.73
1479 1875 4.840401 TCGCTCGTCAAGAATGTAATTG 57.160 40.909 0.00 0.00 36.07 2.32
1486 1882 4.898370 GTCAAGAATGTAATTGACCGAGC 58.102 43.478 6.77 0.00 46.15 5.03
1487 1883 4.631813 GTCAAGAATGTAATTGACCGAGCT 59.368 41.667 6.77 0.00 46.15 4.09
1498 1894 0.321996 GACCGAGCTGTTCTTCCCTT 59.678 55.000 0.00 0.00 0.00 3.95
1508 1904 3.664107 TGTTCTTCCCTTCTGTGAATCG 58.336 45.455 0.00 0.00 0.00 3.34
1515 1911 4.905429 TCCCTTCTGTGAATCGAATTTGA 58.095 39.130 0.00 0.00 0.00 2.69
1886 2300 3.810373 CGAAATTGTTGGTTCTTCTCGG 58.190 45.455 0.00 0.00 0.00 4.63
1892 2306 3.211045 TGTTGGTTCTTCTCGGGAAAAG 58.789 45.455 0.00 0.00 0.00 2.27
1938 2354 8.247562 AGTTCATTCTTCTTACTAGTAGCACAG 58.752 37.037 2.23 0.00 0.00 3.66
1958 2374 7.118390 AGCACAGTTACTACTAGCAAAGAATTG 59.882 37.037 0.00 0.00 37.17 2.32
1983 2399 5.410924 TCACCTCACGAACTTAATCATGAG 58.589 41.667 0.09 0.00 38.90 2.90
2018 2844 9.537192 TTATGTTACTTCTGATTATTACACGGG 57.463 33.333 0.00 0.00 0.00 5.28
2019 2845 7.172868 TGTTACTTCTGATTATTACACGGGA 57.827 36.000 0.00 0.00 0.00 5.14
2020 2846 7.788026 TGTTACTTCTGATTATTACACGGGAT 58.212 34.615 0.00 0.00 0.00 3.85
2326 3152 0.669625 GAGCACAAGGTACCCACGAC 60.670 60.000 8.74 0.00 0.00 4.34
2496 3323 3.031660 GTGGATCACGTCGTCTTCC 57.968 57.895 13.75 13.75 0.00 3.46
2546 3377 1.359130 AGTACCTAACCTACCCACCGT 59.641 52.381 0.00 0.00 0.00 4.83
2554 3385 1.255667 CCTACCCACCGTGCTGTAGT 61.256 60.000 18.00 4.59 30.98 2.73
2654 4578 0.323908 AGAGAGGACGAGGGACAAGG 60.324 60.000 0.00 0.00 0.00 3.61
2658 4582 2.047179 GACGAGGGACAAGGTGGC 60.047 66.667 0.00 0.00 0.00 5.01
2664 4588 2.936032 GGACAAGGTGGCCCTCCT 60.936 66.667 10.37 10.37 40.64 3.69
2696 4620 0.537371 CATAATGGGTCGGGAAGGGC 60.537 60.000 0.00 0.00 0.00 5.19
2721 4646 2.401766 GCCCGTGCAACTGATGAGG 61.402 63.158 0.00 0.00 37.47 3.86
2782 4709 1.909302 CCGGCCCATATCTATCCTTGT 59.091 52.381 0.00 0.00 0.00 3.16
2820 4747 0.672401 TCGTCCCCACAAATTCTCGC 60.672 55.000 0.00 0.00 0.00 5.03
2845 4772 1.973281 CACTGTCATGTGGGCCACC 60.973 63.158 32.61 18.08 34.56 4.61
3162 5089 2.614057 CTCAATTCCGCTGTAATCCACC 59.386 50.000 0.00 0.00 0.00 4.61
3221 5148 4.018779 AGGTTTCTCCATCCCGATTGTTTA 60.019 41.667 0.00 0.00 39.02 2.01
3279 5210 2.355010 GCTAGACAGCCCCATTCATT 57.645 50.000 0.00 0.00 42.37 2.57
3296 5227 2.811431 TCATTTTTGTACTCACAGCGGG 59.189 45.455 0.00 0.00 35.67 6.13
3310 5241 3.047877 CGGGGGCAGTGTTCGTTC 61.048 66.667 0.00 0.00 0.00 3.95
3311 5242 3.047877 GGGGGCAGTGTTCGTTCG 61.048 66.667 0.00 0.00 0.00 3.95
3312 5243 2.280592 GGGGCAGTGTTCGTTCGT 60.281 61.111 0.00 0.00 0.00 3.85
3324 5255 1.171308 TCGTTCGTGTAGAGGGAAGG 58.829 55.000 0.00 0.00 0.00 3.46
3325 5256 0.886563 CGTTCGTGTAGAGGGAAGGT 59.113 55.000 0.00 0.00 0.00 3.50
3348 5279 0.178891 AGTGGAAAGGGAGGAGCTGA 60.179 55.000 0.00 0.00 0.00 4.26
3475 5406 3.730761 CGCTTGCGCTCCTGCTTT 61.731 61.111 9.73 0.00 36.97 3.51
3546 5477 2.029073 CACCTGCTCGACCACGTT 59.971 61.111 0.00 0.00 40.69 3.99
3622 5553 2.829003 TGACCTCCCTAGCGCTCG 60.829 66.667 16.34 7.87 0.00 5.03
3893 5824 2.463589 ATCTCCGGGCTCGTGCAAAA 62.464 55.000 4.71 0.00 41.91 2.44
3895 5826 1.982073 CTCCGGGCTCGTGCAAAATC 61.982 60.000 4.71 0.00 41.91 2.17
3896 5827 2.331893 CCGGGCTCGTGCAAAATCA 61.332 57.895 4.71 0.00 41.91 2.57
3900 5831 0.593128 GGCTCGTGCAAAATCACAGT 59.407 50.000 12.07 0.00 41.91 3.55
3907 5838 1.962807 TGCAAAATCACAGTCCCTTGG 59.037 47.619 0.00 0.00 0.00 3.61
4000 5931 0.108186 CAAGGCGTACATGGAGCTCA 60.108 55.000 17.19 1.87 0.00 4.26
4359 6290 1.405872 TGGAGGATTATGTACGCCGT 58.594 50.000 0.00 0.00 0.00 5.68
4410 6341 4.002982 ACACAGCGTTGATTGACATGTAT 58.997 39.130 6.16 0.00 0.00 2.29
4463 6394 2.802816 GAGTCTTTGAACAGATGCGTGT 59.197 45.455 0.00 0.00 0.00 4.49
4539 6470 0.179009 GCCATCTTGCTGAGGCCATA 60.179 55.000 5.01 0.00 41.25 2.74
4695 6626 3.371097 GATCGAGCCTCGGCACCAA 62.371 63.158 15.08 0.00 44.88 3.67
4779 6710 7.468494 CGATTTATACTTGACATGCCCATCAAA 60.468 37.037 0.00 0.00 34.52 2.69
4794 6725 4.080919 CCCATCAAACCAGAGATGAGTGTA 60.081 45.833 4.12 0.00 43.28 2.90
5001 6932 0.755327 GGGGTGTCACCAAAGCAACT 60.755 55.000 23.48 0.00 41.02 3.16
5240 7171 7.142680 CAGCATTAATTGTGTCATGCATATCA 58.857 34.615 0.00 0.00 43.81 2.15
5311 7242 9.705290 GACCATCAAAATAAACAAAACATACCT 57.295 29.630 0.00 0.00 0.00 3.08
5372 7303 4.821260 GGGTTGATGATTTTTGCAAACCTT 59.179 37.500 12.39 0.00 43.15 3.50
5432 7364 1.626356 TAGCTGTGAGGGTGGATGCC 61.626 60.000 0.00 0.00 0.00 4.40
5575 7507 8.553459 AACTCCTGTAGTTTGTTCATAAGATG 57.447 34.615 0.00 0.00 46.61 2.90
5629 7561 9.944376 TGTTCCATGGTAATTAGATATCTAAGC 57.056 33.333 25.30 18.24 41.24 3.09
5667 7599 7.857569 TGTGTTGGAGAAATTTTAGTTAGTCG 58.142 34.615 0.00 0.00 0.00 4.18
6193 8234 6.373774 ACTTGGTTCTCTCTTGATGCTATTTG 59.626 38.462 0.00 0.00 0.00 2.32
6264 8305 2.393271 ACGAGGCTTCATTTCCAGAG 57.607 50.000 0.00 0.00 0.00 3.35
6326 8368 8.851541 ATTGTTTTTCCAAATCTGCAATATGT 57.148 26.923 0.00 0.00 0.00 2.29
6350 8392 8.225908 TGTGATTAACAATCCATTCTTGGACGA 61.226 37.037 0.00 0.00 43.98 4.20
6514 8556 9.261180 CTTACACATACTATTATCCTTGTGGTG 57.739 37.037 5.91 0.00 38.94 4.17
6630 8684 0.461339 GATGATAACCACACCGCGGT 60.461 55.000 28.70 28.70 38.85 5.68
6631 8685 0.825410 ATGATAACCACACCGCGGTA 59.175 50.000 33.70 15.63 34.99 4.02
6632 8686 0.173935 TGATAACCACACCGCGGTAG 59.826 55.000 33.70 26.15 34.99 3.18
6633 8687 1.149964 GATAACCACACCGCGGTAGC 61.150 60.000 33.70 14.01 34.99 3.58
6634 8688 1.890625 ATAACCACACCGCGGTAGCA 61.891 55.000 33.70 13.42 45.49 3.49
6635 8689 1.890625 TAACCACACCGCGGTAGCAT 61.891 55.000 33.70 18.38 45.49 3.79
6636 8690 2.890474 CCACACCGCGGTAGCATC 60.890 66.667 33.70 0.00 45.49 3.91
6637 8691 2.184322 CACACCGCGGTAGCATCT 59.816 61.111 33.70 2.52 45.49 2.90
6638 8692 2.167219 CACACCGCGGTAGCATCTG 61.167 63.158 33.70 19.51 45.49 2.90
6639 8693 3.264897 CACCGCGGTAGCATCTGC 61.265 66.667 33.70 0.00 45.49 4.26
6640 8694 3.770040 ACCGCGGTAGCATCTGCA 61.770 61.111 33.34 0.00 45.49 4.41
6641 8695 2.963854 CCGCGGTAGCATCTGCAG 60.964 66.667 19.50 7.63 45.49 4.41
6825 8879 5.826601 TTTATGCAGATAATGTTTCGCCA 57.173 34.783 0.00 0.00 0.00 5.69
6847 8901 1.133513 AGTCTCAACCACAATGGGCAA 60.134 47.619 0.00 0.00 43.37 4.52
6897 8951 6.131389 GGTGAACAGTGACGTGTTAAATAAC 58.869 40.000 0.00 0.00 40.83 1.89
6961 9015 7.149202 AGCCAATATTCCCAAGAGTATGTTA 57.851 36.000 0.00 0.00 0.00 2.41
7005 9059 3.844577 ATTGTACGTCGCTACTTGAGT 57.155 42.857 0.00 0.00 0.00 3.41
7006 9060 4.952262 ATTGTACGTCGCTACTTGAGTA 57.048 40.909 0.00 0.00 0.00 2.59
7007 9061 4.952262 TTGTACGTCGCTACTTGAGTAT 57.048 40.909 0.00 0.00 0.00 2.12
7008 9062 4.526970 TGTACGTCGCTACTTGAGTATC 57.473 45.455 0.00 0.00 0.00 2.24
7076 9137 9.995003 TGTTATTTTTGGAAACATTTAGCATCT 57.005 25.926 0.00 0.00 42.32 2.90
7082 9143 5.472148 TGGAAACATTTAGCATCTGCTTTG 58.528 37.500 10.38 8.59 42.51 2.77
7083 9144 5.243507 TGGAAACATTTAGCATCTGCTTTGA 59.756 36.000 10.38 0.00 42.51 2.69
7084 9145 6.071221 TGGAAACATTTAGCATCTGCTTTGAT 60.071 34.615 10.38 0.00 42.51 2.57
7085 9146 7.842449 TGGAAACATTTAGCATCTGCTTTGATC 60.842 37.037 10.38 9.49 42.51 2.92
7103 9165 7.960738 GCTTTGATCGTTGTTATTAAACTAGCA 59.039 33.333 0.00 0.00 36.51 3.49
7117 9179 5.488262 AAACTAGCATTTCCTGGCAATTT 57.512 34.783 0.00 0.00 0.00 1.82
7125 9187 7.267857 AGCATTTCCTGGCAATTTTATAGTTC 58.732 34.615 0.00 0.00 0.00 3.01
7174 9270 7.820648 AGAGCATATCGTGAAAAACATTTCTT 58.179 30.769 3.31 0.00 32.39 2.52
7203 9299 3.372822 ACCAAACAAAGTACACTGACACG 59.627 43.478 0.00 0.00 0.00 4.49
7246 9343 4.933400 ACAACAGGCTACTTAATACGTTGG 59.067 41.667 11.60 0.00 37.42 3.77
7469 10129 6.182039 TCTATTGTAGCATTTGCACACTTC 57.818 37.500 5.20 0.00 45.16 3.01
7473 10133 4.609947 TGTAGCATTTGCACACTTCAAAG 58.390 39.130 5.20 0.00 45.16 2.77
7501 10161 6.233434 TCAGAGTCAGTTCTTGTAAATGCAT 58.767 36.000 0.00 0.00 0.00 3.96
7517 10177 2.346803 TGCATCTTAACGTCTCCTTGC 58.653 47.619 0.00 0.00 0.00 4.01
7521 10181 4.360563 CATCTTAACGTCTCCTTGCGTAT 58.639 43.478 0.00 0.00 40.70 3.06
7533 10208 8.120465 CGTCTCCTTGCGTATGTTATTTTAAAT 58.880 33.333 0.00 0.00 0.00 1.40
7557 10232 3.070748 TGACATGTGGTGTTTACATCCG 58.929 45.455 1.15 0.00 42.36 4.18
7579 10254 2.554462 TGTAGGAGCACATCGATCTAGC 59.446 50.000 0.00 0.00 0.00 3.42
7590 10265 1.008767 GATCTAGCCCCGACGAACG 60.009 63.158 0.00 0.00 42.18 3.95
7592 10267 1.033746 ATCTAGCCCCGACGAACGAA 61.034 55.000 0.00 0.00 45.77 3.85
7640 10315 3.755628 AACGCCGCCGAAGAGCTA 61.756 61.111 0.00 0.00 38.29 3.32
7646 10321 2.886124 GCCGAAGAGCTACCGCAC 60.886 66.667 0.00 0.00 39.10 5.34
7650 10325 2.125912 AAGAGCTACCGCACGCAG 60.126 61.111 0.00 0.00 39.10 5.18
7865 10543 4.033019 GTCGCCGCCTTTTATTTATTGTC 58.967 43.478 0.00 0.00 0.00 3.18
8000 10678 4.081807 ACCTGTAAGATAACTCGACCAACC 60.082 45.833 0.00 0.00 34.07 3.77
8003 10681 3.611766 AAGATAACTCGACCAACCCTG 57.388 47.619 0.00 0.00 0.00 4.45
8005 10683 2.496470 AGATAACTCGACCAACCCTGTC 59.504 50.000 0.00 0.00 0.00 3.51
8007 10685 1.129058 AACTCGACCAACCCTGTCTT 58.871 50.000 0.00 0.00 0.00 3.01
8008 10686 1.129058 ACTCGACCAACCCTGTCTTT 58.871 50.000 0.00 0.00 0.00 2.52
8010 10688 2.701951 ACTCGACCAACCCTGTCTTTTA 59.298 45.455 0.00 0.00 0.00 1.52
8011 10689 3.064931 CTCGACCAACCCTGTCTTTTAC 58.935 50.000 0.00 0.00 0.00 2.01
8012 10690 2.701951 TCGACCAACCCTGTCTTTTACT 59.298 45.455 0.00 0.00 0.00 2.24
8013 10691 2.806244 CGACCAACCCTGTCTTTTACTG 59.194 50.000 0.00 0.00 0.00 2.74
8041 10719 0.324368 TCGCACCCTGGAGTATGTCT 60.324 55.000 0.00 0.00 0.00 3.41
8042 10720 0.103208 CGCACCCTGGAGTATGTCTC 59.897 60.000 0.00 0.00 42.07 3.36
8043 10721 1.195115 GCACCCTGGAGTATGTCTCA 58.805 55.000 0.00 0.00 44.40 3.27
8045 10723 2.484417 GCACCCTGGAGTATGTCTCATG 60.484 54.545 0.00 0.00 44.40 3.07
8046 10724 2.768527 CACCCTGGAGTATGTCTCATGT 59.231 50.000 0.00 0.00 44.40 3.21
8047 10725 3.034635 ACCCTGGAGTATGTCTCATGTC 58.965 50.000 0.00 0.00 44.40 3.06
8050 10728 3.703556 CCTGGAGTATGTCTCATGTCTGT 59.296 47.826 0.00 0.00 44.40 3.41
8052 10730 5.330455 TGGAGTATGTCTCATGTCTGTTC 57.670 43.478 0.00 0.00 44.40 3.18
8055 10733 4.753233 AGTATGTCTCATGTCTGTTCTGC 58.247 43.478 0.00 0.00 0.00 4.26
8056 10734 3.977134 ATGTCTCATGTCTGTTCTGCT 57.023 42.857 0.00 0.00 0.00 4.24
8057 10735 5.654209 AGTATGTCTCATGTCTGTTCTGCTA 59.346 40.000 0.00 0.00 0.00 3.49
8058 10736 5.611128 ATGTCTCATGTCTGTTCTGCTAT 57.389 39.130 0.00 0.00 0.00 2.97
8061 10739 7.117285 TGTCTCATGTCTGTTCTGCTATTAT 57.883 36.000 0.00 0.00 0.00 1.28
8063 10741 7.069208 TGTCTCATGTCTGTTCTGCTATTATCT 59.931 37.037 0.00 0.00 0.00 1.98
8064 10742 7.925483 GTCTCATGTCTGTTCTGCTATTATCTT 59.075 37.037 0.00 0.00 0.00 2.40
8065 10743 9.136323 TCTCATGTCTGTTCTGCTATTATCTTA 57.864 33.333 0.00 0.00 0.00 2.10
8091 10769 9.624373 ATCTCATGTCTGTTTTGCTATTATCTT 57.376 29.630 0.00 0.00 0.00 2.40
8095 10773 9.926751 CATGTCTGTTTTGCTATTATCTTACTG 57.073 33.333 0.00 0.00 0.00 2.74
8115 10814 6.510879 ACTGTATCTCTGTCGAATTGTGTA 57.489 37.500 0.00 0.00 0.00 2.90
8137 10839 2.148446 TGAATTGGATGGAAGCCCAG 57.852 50.000 0.00 0.00 46.54 4.45
8146 10854 2.123982 GAAGCCCAGGCCTCCATG 60.124 66.667 0.00 0.00 43.17 3.66
8217 10925 2.901042 GGTGGCGAGGGGAAGTAG 59.099 66.667 0.00 0.00 0.00 2.57
8219 10927 2.038975 TGGCGAGGGGAAGTAGCT 59.961 61.111 0.00 0.00 0.00 3.32
8220 10928 2.058595 TGGCGAGGGGAAGTAGCTC 61.059 63.158 0.00 0.00 0.00 4.09
8255 10975 2.150397 GTGACTTTGCTAGTGACGGT 57.850 50.000 0.00 0.00 37.17 4.83
8256 10976 2.480845 GTGACTTTGCTAGTGACGGTT 58.519 47.619 0.00 0.00 37.17 4.44
8310 11031 1.017701 GGAACCTCGTTTACCCAGCG 61.018 60.000 0.00 0.00 0.00 5.18
8314 11035 1.359459 CCTCGTTTACCCAGCGCTTC 61.359 60.000 7.50 0.00 0.00 3.86
8368 11089 4.816925 GCTCACTCTTTGGAACTAAACAGT 59.183 41.667 0.00 0.00 0.00 3.55
8388 11109 1.227380 GGCAGTGGCGAGATACAGG 60.227 63.158 0.00 0.00 42.47 4.00
8413 11134 6.476706 GCAGAGCAAGTAAATGTTTTTGAAGT 59.523 34.615 0.00 0.00 0.00 3.01
8427 11148 1.216710 GAAGTGAGGGCGTCTGAGG 59.783 63.158 8.82 0.00 0.00 3.86
8429 11150 3.386237 GTGAGGGCGTCTGAGGCT 61.386 66.667 20.19 3.18 36.85 4.58
8432 11153 0.687757 TGAGGGCGTCTGAGGCTAAT 60.688 55.000 20.19 7.99 36.85 1.73
8464 11185 2.176546 CAAGCGCGGTCCATTGTG 59.823 61.111 12.91 0.04 0.00 3.33
8514 11235 1.344065 TTGTCCCTTCCAAGACGCTA 58.656 50.000 0.00 0.00 35.71 4.26
8515 11236 0.606604 TGTCCCTTCCAAGACGCTAC 59.393 55.000 0.00 0.00 35.71 3.58
8516 11237 0.896226 GTCCCTTCCAAGACGCTACT 59.104 55.000 0.00 0.00 0.00 2.57
8517 11238 2.097825 GTCCCTTCCAAGACGCTACTA 58.902 52.381 0.00 0.00 0.00 1.82
8551 11272 4.736896 GGTCGACGGCACAGGGTC 62.737 72.222 9.92 0.00 0.00 4.46
8553 11274 3.228017 TCGACGGCACAGGGTCAA 61.228 61.111 0.00 0.00 32.74 3.18
8554 11275 2.738521 CGACGGCACAGGGTCAAG 60.739 66.667 0.00 0.00 32.74 3.02
8555 11276 2.741092 GACGGCACAGGGTCAAGA 59.259 61.111 0.00 0.00 33.41 3.02
8556 11277 1.296715 GACGGCACAGGGTCAAGAT 59.703 57.895 0.00 0.00 33.41 2.40
8557 11278 1.003355 ACGGCACAGGGTCAAGATG 60.003 57.895 0.00 0.00 0.00 2.90
8558 11279 1.746615 CGGCACAGGGTCAAGATGG 60.747 63.158 0.00 0.00 0.00 3.51
8559 11280 1.379044 GGCACAGGGTCAAGATGGG 60.379 63.158 0.00 0.00 0.00 4.00
8560 11281 1.685224 GCACAGGGTCAAGATGGGA 59.315 57.895 0.00 0.00 0.00 4.37
8561 11282 0.038166 GCACAGGGTCAAGATGGGAA 59.962 55.000 0.00 0.00 0.00 3.97
8562 11283 1.826385 CACAGGGTCAAGATGGGAAC 58.174 55.000 0.00 0.00 0.00 3.62
8563 11284 0.324943 ACAGGGTCAAGATGGGAACG 59.675 55.000 0.00 0.00 0.00 3.95
8564 11285 0.392998 CAGGGTCAAGATGGGAACGG 60.393 60.000 0.00 0.00 0.00 4.44
8565 11286 1.077716 GGGTCAAGATGGGAACGGG 60.078 63.158 0.00 0.00 0.00 5.28
8566 11287 1.749258 GGTCAAGATGGGAACGGGC 60.749 63.158 0.00 0.00 0.00 6.13
8567 11288 1.749258 GTCAAGATGGGAACGGGCC 60.749 63.158 0.00 0.00 0.00 5.80
8568 11289 2.824041 CAAGATGGGAACGGGCCG 60.824 66.667 27.06 27.06 0.00 6.13
8569 11290 4.109675 AAGATGGGAACGGGCCGG 62.110 66.667 31.78 12.53 0.00 6.13
8601 11322 3.727258 CCATTGGCCCGACCCAGA 61.727 66.667 0.00 0.00 37.83 3.86
8602 11323 2.354729 CATTGGCCCGACCCAGAA 59.645 61.111 0.00 0.00 37.83 3.02
8603 11324 1.304052 CATTGGCCCGACCCAGAAA 60.304 57.895 0.00 0.00 37.83 2.52
8604 11325 0.897863 CATTGGCCCGACCCAGAAAA 60.898 55.000 0.00 0.00 37.83 2.29
8605 11326 0.041090 ATTGGCCCGACCCAGAAAAT 59.959 50.000 0.00 0.00 37.83 1.82
8606 11327 0.610785 TTGGCCCGACCCAGAAAATC 60.611 55.000 0.00 0.00 37.83 2.17
8607 11328 2.112815 GGCCCGACCCAGAAAATCG 61.113 63.158 0.00 0.00 35.62 3.34
8608 11329 1.078708 GCCCGACCCAGAAAATCGA 60.079 57.895 0.00 0.00 38.10 3.59
8609 11330 1.090052 GCCCGACCCAGAAAATCGAG 61.090 60.000 0.00 0.00 38.10 4.04
8610 11331 0.462047 CCCGACCCAGAAAATCGAGG 60.462 60.000 0.00 0.00 38.10 4.63
8611 11332 1.090052 CCGACCCAGAAAATCGAGGC 61.090 60.000 0.00 0.00 38.10 4.70
8612 11333 1.090052 CGACCCAGAAAATCGAGGCC 61.090 60.000 0.00 0.00 38.10 5.19
8613 11334 0.035439 GACCCAGAAAATCGAGGCCA 60.035 55.000 5.01 0.00 0.00 5.36
8614 11335 0.625849 ACCCAGAAAATCGAGGCCAT 59.374 50.000 5.01 0.00 0.00 4.40
8615 11336 1.005924 ACCCAGAAAATCGAGGCCATT 59.994 47.619 5.01 0.00 0.00 3.16
8616 11337 1.406539 CCCAGAAAATCGAGGCCATTG 59.593 52.381 5.01 0.00 0.00 2.82
8617 11338 1.406539 CCAGAAAATCGAGGCCATTGG 59.593 52.381 5.01 0.00 0.00 3.16
8618 11339 2.368439 CAGAAAATCGAGGCCATTGGA 58.632 47.619 5.01 0.00 0.00 3.53
8619 11340 2.954318 CAGAAAATCGAGGCCATTGGAT 59.046 45.455 5.01 0.00 0.00 3.41
8620 11341 3.004106 CAGAAAATCGAGGCCATTGGATC 59.996 47.826 5.01 2.54 0.00 3.36
8621 11342 3.117738 AGAAAATCGAGGCCATTGGATCT 60.118 43.478 5.01 2.61 0.00 2.75
8622 11343 2.267174 AATCGAGGCCATTGGATCTG 57.733 50.000 5.01 1.22 0.00 2.90
8623 11344 1.135094 ATCGAGGCCATTGGATCTGT 58.865 50.000 5.01 0.00 0.00 3.41
8624 11345 0.465705 TCGAGGCCATTGGATCTGTC 59.534 55.000 5.01 0.00 0.00 3.51
8625 11346 0.877649 CGAGGCCATTGGATCTGTCG 60.878 60.000 5.01 0.00 0.00 4.35
8626 11347 0.533755 GAGGCCATTGGATCTGTCGG 60.534 60.000 5.01 0.00 0.00 4.79
8627 11348 1.526917 GGCCATTGGATCTGTCGGG 60.527 63.158 6.95 0.00 0.00 5.14
8628 11349 1.224592 GCCATTGGATCTGTCGGGT 59.775 57.895 6.95 0.00 0.00 5.28
8629 11350 0.815615 GCCATTGGATCTGTCGGGTC 60.816 60.000 6.95 0.00 0.00 4.46
8630 11351 0.541392 CCATTGGATCTGTCGGGTCA 59.459 55.000 0.00 0.00 0.00 4.02
8631 11352 1.473965 CCATTGGATCTGTCGGGTCAG 60.474 57.143 0.00 0.00 36.85 3.51
8632 11353 0.179000 ATTGGATCTGTCGGGTCAGC 59.821 55.000 0.00 0.00 35.63 4.26
8633 11354 1.899437 TTGGATCTGTCGGGTCAGCC 61.899 60.000 0.00 0.00 35.63 4.85
8634 11355 2.060980 GGATCTGTCGGGTCAGCCT 61.061 63.158 0.00 0.00 35.63 4.58
8635 11356 1.439644 GATCTGTCGGGTCAGCCTC 59.560 63.158 0.00 0.00 35.63 4.70
8636 11357 2.343163 GATCTGTCGGGTCAGCCTCG 62.343 65.000 0.00 0.00 35.63 4.63
8637 11358 3.374402 CTGTCGGGTCAGCCTCGT 61.374 66.667 0.00 0.00 34.45 4.18
8638 11359 2.034532 TGTCGGGTCAGCCTCGTA 59.965 61.111 0.00 0.00 34.45 3.43
8639 11360 1.379443 TGTCGGGTCAGCCTCGTAT 60.379 57.895 0.00 0.00 34.45 3.06
8640 11361 1.065928 GTCGGGTCAGCCTCGTATG 59.934 63.158 0.00 0.00 34.45 2.39
8641 11362 2.125326 TCGGGTCAGCCTCGTATGG 61.125 63.158 0.00 0.00 34.45 2.74
8642 11363 2.822399 GGGTCAGCCTCGTATGGG 59.178 66.667 0.00 0.00 34.45 4.00
8643 11364 1.760875 GGGTCAGCCTCGTATGGGA 60.761 63.158 0.00 0.00 34.45 4.37
8644 11365 1.122019 GGGTCAGCCTCGTATGGGAT 61.122 60.000 0.00 0.00 34.45 3.85
8645 11366 0.759346 GGTCAGCCTCGTATGGGATT 59.241 55.000 0.00 0.00 0.00 3.01
8646 11367 1.270358 GGTCAGCCTCGTATGGGATTC 60.270 57.143 0.00 0.00 0.00 2.52
8647 11368 0.673985 TCAGCCTCGTATGGGATTCG 59.326 55.000 0.00 0.00 0.00 3.34
8648 11369 0.319900 CAGCCTCGTATGGGATTCGG 60.320 60.000 0.00 0.00 0.00 4.30
8649 11370 0.759436 AGCCTCGTATGGGATTCGGT 60.759 55.000 0.00 0.00 0.00 4.69
8650 11371 0.319641 GCCTCGTATGGGATTCGGTC 60.320 60.000 0.00 0.00 0.00 4.79
8659 11380 3.969995 GGATTCGGTCCAGTAGAGC 57.030 57.895 3.29 0.00 46.96 4.09
8660 11381 0.389757 GGATTCGGTCCAGTAGAGCC 59.610 60.000 3.29 0.00 46.96 4.70
8661 11382 0.030908 GATTCGGTCCAGTAGAGCCG 59.969 60.000 0.00 0.00 40.01 5.52
8662 11383 1.392710 ATTCGGTCCAGTAGAGCCGG 61.393 60.000 0.00 0.00 40.01 6.13
8663 11384 4.208686 CGGTCCAGTAGAGCCGGC 62.209 72.222 21.89 21.89 40.01 6.13
8664 11385 3.075005 GGTCCAGTAGAGCCGGCA 61.075 66.667 31.54 4.59 36.99 5.69
8665 11386 2.184579 GTCCAGTAGAGCCGGCAC 59.815 66.667 31.54 24.27 0.00 5.01
8666 11387 2.037367 TCCAGTAGAGCCGGCACT 59.963 61.111 29.33 29.33 0.00 4.40
8667 11388 1.035932 GTCCAGTAGAGCCGGCACTA 61.036 60.000 31.54 29.08 0.00 2.74
8668 11389 0.752009 TCCAGTAGAGCCGGCACTAG 60.752 60.000 30.60 20.44 0.00 2.57
8669 11390 1.038130 CCAGTAGAGCCGGCACTAGT 61.038 60.000 30.60 29.77 0.00 2.57
8670 11391 0.818296 CAGTAGAGCCGGCACTAGTT 59.182 55.000 31.25 20.94 0.00 2.24
8671 11392 0.818296 AGTAGAGCCGGCACTAGTTG 59.182 55.000 30.60 0.00 0.00 3.16
8672 11393 0.815734 GTAGAGCCGGCACTAGTTGA 59.184 55.000 30.60 11.41 0.00 3.18
8673 11394 0.815734 TAGAGCCGGCACTAGTTGAC 59.184 55.000 31.54 7.76 0.00 3.18
8674 11395 1.448013 GAGCCGGCACTAGTTGACC 60.448 63.158 31.54 0.00 0.00 4.02
8675 11396 2.436115 GCCGGCACTAGTTGACCC 60.436 66.667 24.80 0.00 0.00 4.46
8676 11397 3.065306 CCGGCACTAGTTGACCCA 58.935 61.111 0.00 0.00 0.00 4.51
8677 11398 1.602237 CCGGCACTAGTTGACCCAT 59.398 57.895 0.00 0.00 0.00 4.00
8678 11399 0.035439 CCGGCACTAGTTGACCCATT 60.035 55.000 0.00 0.00 0.00 3.16
8679 11400 1.086696 CGGCACTAGTTGACCCATTG 58.913 55.000 0.00 0.00 0.00 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.164176 CGAACTAAACTTCCTCCTATGTTGT 58.836 40.000 0.00 0.00 0.00 3.32
33 34 5.417266 GGTAGTACGAACTAAACTTCCTCCT 59.583 44.000 0.00 0.00 39.90 3.69
143 148 4.543692 CCAACAAATCAGTGCAAAGAGAG 58.456 43.478 0.00 0.00 0.00 3.20
177 191 5.867174 GTGGCAGTACAAAATTATTGGGTTC 59.133 40.000 0.00 0.00 0.00 3.62
204 218 1.490693 CTCCCATCGAATTCACGCGG 61.491 60.000 12.47 0.00 0.00 6.46
219 233 1.478916 CGTCCTTTTCCTCTCTCTCCC 59.521 57.143 0.00 0.00 0.00 4.30
228 242 1.600916 GCACCTGCGTCCTTTTCCT 60.601 57.895 0.00 0.00 0.00 3.36
261 275 2.452114 CCCACTCCACCCCTCTCT 59.548 66.667 0.00 0.00 0.00 3.10
270 284 3.943137 ATTCGGCCTCCCCACTCCA 62.943 63.158 0.00 0.00 0.00 3.86
278 294 2.110006 GCTCCAGATTCGGCCTCC 59.890 66.667 0.00 0.00 0.00 4.30
389 405 3.391382 GACGTGGAGTGGGGAGGG 61.391 72.222 0.00 0.00 0.00 4.30
496 517 4.825679 GAGGTGGGGGAGGGAGGG 62.826 77.778 0.00 0.00 0.00 4.30
615 636 0.386113 GCGTTGCTAGCTAGGCTACT 59.614 55.000 28.44 0.00 40.44 2.57
617 638 1.740285 GGCGTTGCTAGCTAGGCTA 59.260 57.895 31.98 8.73 40.44 3.93
624 645 3.838795 CGTGACGGCGTTGCTAGC 61.839 66.667 16.19 8.10 0.00 3.42
625 646 0.730155 TTACGTGACGGCGTTGCTAG 60.730 55.000 16.19 7.18 43.04 3.42
626 647 1.003262 GTTACGTGACGGCGTTGCTA 61.003 55.000 16.19 0.00 43.04 3.49
627 648 2.027897 TTACGTGACGGCGTTGCT 59.972 55.556 16.19 0.00 43.04 3.91
628 649 2.169327 GTTACGTGACGGCGTTGC 59.831 61.111 16.19 9.44 43.04 4.17
630 651 2.010817 GACGTTACGTGACGGCGTT 61.011 57.895 32.04 14.78 46.77 4.84
713 736 1.961277 CCGTGTGAGCTGTGGGAAC 60.961 63.158 0.00 0.00 0.00 3.62
714 737 2.425592 CCGTGTGAGCTGTGGGAA 59.574 61.111 0.00 0.00 0.00 3.97
790 893 7.872138 TCTCCTCTCTTAATTCTCTCTCTCTT 58.128 38.462 0.00 0.00 0.00 2.85
802 910 5.399038 CCCTCTGTCTCTCTCCTCTCTTAAT 60.399 48.000 0.00 0.00 0.00 1.40
810 918 1.846439 CTCTCCCTCTGTCTCTCTCCT 59.154 57.143 0.00 0.00 0.00 3.69
820 928 2.105477 CTCCTCTCTCTCTCTCCCTCTG 59.895 59.091 0.00 0.00 0.00 3.35
909 1029 0.462047 ATCGCCGGAACAGTTGATCC 60.462 55.000 5.05 0.00 34.08 3.36
916 1036 1.143969 GGTAACGATCGCCGGAACAG 61.144 60.000 16.60 0.00 43.93 3.16
990 1110 4.401022 CTTGGATGCCCATAATTCTAGCA 58.599 43.478 0.00 0.00 43.12 3.49
1060 1180 2.978452 ATCCATGCTAGACGGCGCAC 62.978 60.000 10.83 0.76 39.21 5.34
1061 1181 2.796193 ATCCATGCTAGACGGCGCA 61.796 57.895 10.83 0.00 40.87 6.09
1164 1284 1.384191 GTCCCCTTGTTCCCTGCAT 59.616 57.895 0.00 0.00 0.00 3.96
1179 1299 1.153997 GAGAGGAAGTCGTGCGTCC 60.154 63.158 6.61 6.61 44.60 4.79
1317 1445 1.470632 GGTTGCGATCAGAGACAGAGG 60.471 57.143 0.00 0.00 0.00 3.69
1350 1487 1.595929 GGAATTAATCCGCCGCCGA 60.596 57.895 0.00 0.00 38.79 5.54
1360 1497 9.160412 AGTTGGCTGATACTACTAGGAATTAAT 57.840 33.333 0.00 0.00 0.00 1.40
1375 1512 3.793797 TTCGATCGAAGTTGGCTGATA 57.206 42.857 25.96 0.00 0.00 2.15
1429 1825 1.213537 CAATTTGGACCTGCCTGCG 59.786 57.895 0.00 0.00 37.63 5.18
1479 1875 0.321996 AAGGGAAGAACAGCTCGGTC 59.678 55.000 0.00 0.00 0.00 4.79
1486 1882 3.681897 CGATTCACAGAAGGGAAGAACAG 59.318 47.826 0.00 0.00 0.00 3.16
1487 1883 3.323691 TCGATTCACAGAAGGGAAGAACA 59.676 43.478 0.00 0.00 0.00 3.18
1498 1894 7.809331 CCAAGAAAATCAAATTCGATTCACAGA 59.191 33.333 0.00 0.00 34.49 3.41
1508 1904 5.179929 CAGTTGCCCCAAGAAAATCAAATTC 59.820 40.000 0.00 0.00 0.00 2.17
1515 1911 1.720781 AGCAGTTGCCCCAAGAAAAT 58.279 45.000 0.00 0.00 43.38 1.82
1815 2225 2.813754 GCGCTGGGCTAATCATGATTAA 59.186 45.455 24.61 12.07 39.11 1.40
1858 2272 2.969628 ACCAACAATTTCGCAACCAA 57.030 40.000 0.00 0.00 0.00 3.67
1860 2274 3.092334 AGAACCAACAATTTCGCAACC 57.908 42.857 0.00 0.00 0.00 3.77
1931 2347 6.829229 TCTTTGCTAGTAGTAACTGTGCTA 57.171 37.500 0.00 0.00 37.39 3.49
1932 2348 5.723672 TCTTTGCTAGTAGTAACTGTGCT 57.276 39.130 0.00 0.00 37.39 4.40
1933 2349 6.969828 ATTCTTTGCTAGTAGTAACTGTGC 57.030 37.500 0.00 0.00 36.36 4.57
1938 2354 8.228464 GGTGAACAATTCTTTGCTAGTAGTAAC 58.772 37.037 0.00 0.00 36.22 2.50
1958 2374 5.637810 TCATGATTAAGTTCGTGAGGTGAAC 59.362 40.000 0.00 0.00 44.72 3.18
2002 2418 7.002276 TCTCAGTATCCCGTGTAATAATCAGA 58.998 38.462 0.00 0.00 0.00 3.27
2008 2834 8.929260 TCTATTTCTCAGTATCCCGTGTAATA 57.071 34.615 0.00 0.00 0.00 0.98
2009 2835 7.724506 TCTCTATTTCTCAGTATCCCGTGTAAT 59.275 37.037 0.00 0.00 0.00 1.89
2010 2836 7.058525 TCTCTATTTCTCAGTATCCCGTGTAA 58.941 38.462 0.00 0.00 0.00 2.41
2011 2837 6.598503 TCTCTATTTCTCAGTATCCCGTGTA 58.401 40.000 0.00 0.00 0.00 2.90
2012 2838 5.446860 TCTCTATTTCTCAGTATCCCGTGT 58.553 41.667 0.00 0.00 0.00 4.49
2013 2839 6.392625 TTCTCTATTTCTCAGTATCCCGTG 57.607 41.667 0.00 0.00 0.00 4.94
2014 2840 7.437748 CAATTCTCTATTTCTCAGTATCCCGT 58.562 38.462 0.00 0.00 0.00 5.28
2015 2841 6.367422 GCAATTCTCTATTTCTCAGTATCCCG 59.633 42.308 0.00 0.00 0.00 5.14
2016 2842 7.387397 CAGCAATTCTCTATTTCTCAGTATCCC 59.613 40.741 0.00 0.00 0.00 3.85
2017 2843 7.095271 GCAGCAATTCTCTATTTCTCAGTATCC 60.095 40.741 0.00 0.00 0.00 2.59
2018 2844 7.440556 TGCAGCAATTCTCTATTTCTCAGTATC 59.559 37.037 0.00 0.00 0.00 2.24
2019 2845 7.278135 TGCAGCAATTCTCTATTTCTCAGTAT 58.722 34.615 0.00 0.00 0.00 2.12
2020 2846 6.643388 TGCAGCAATTCTCTATTTCTCAGTA 58.357 36.000 0.00 0.00 0.00 2.74
2030 2856 4.292186 AGAAACCTGCAGCAATTCTCTA 57.708 40.909 8.66 0.00 0.00 2.43
2032 2858 3.930634 AAGAAACCTGCAGCAATTCTC 57.069 42.857 20.29 7.51 30.43 2.87
2237 3063 2.597510 GGGCTTCACCACCACCAC 60.598 66.667 0.00 0.00 42.05 4.16
2238 3064 4.263572 CGGGCTTCACCACCACCA 62.264 66.667 0.00 0.00 42.05 4.17
2239 3065 3.901797 CTCGGGCTTCACCACCACC 62.902 68.421 0.00 0.00 42.05 4.61
2293 3119 1.069090 TGCTCTCGGTGGTTGTGAC 59.931 57.895 0.00 0.00 0.00 3.67
2468 3295 4.656117 TGATCCACGTGCGTGCGT 62.656 61.111 18.03 9.09 46.88 5.24
2496 3323 1.908793 ACTGACGTGGTGAGAGGGG 60.909 63.158 0.00 0.00 0.00 4.79
2546 3377 1.448365 CATGCCAGCGACTACAGCA 60.448 57.895 0.00 0.00 37.94 4.41
2554 3385 4.002506 ACGGACACATGCCAGCGA 62.003 61.111 0.00 0.00 0.00 4.93
2627 4546 1.096416 CTCGTCCTCTCTGTGGTACC 58.904 60.000 4.43 4.43 0.00 3.34
2628 4547 1.096416 CCTCGTCCTCTCTGTGGTAC 58.904 60.000 0.00 0.00 0.00 3.34
2632 4556 0.609406 TGTCCCTCGTCCTCTCTGTG 60.609 60.000 0.00 0.00 0.00 3.66
2639 4563 1.913762 CCACCTTGTCCCTCGTCCT 60.914 63.158 0.00 0.00 0.00 3.85
2642 4566 3.637273 GGCCACCTTGTCCCTCGT 61.637 66.667 0.00 0.00 0.00 4.18
2654 4578 2.282462 CCACACAAGGAGGGCCAC 60.282 66.667 6.18 0.00 36.29 5.01
2658 4582 4.722700 CGGCCCACACAAGGAGGG 62.723 72.222 0.00 0.00 45.68 4.30
2664 4588 1.000270 ATTATGCCGGCCCACACAA 60.000 52.632 26.77 2.60 0.00 3.33
2721 4646 1.376553 GGGTGAGCAGGACAAGAGC 60.377 63.158 0.00 0.00 0.00 4.09
2794 4721 4.595538 TGTGGGGACGACGTGTGC 62.596 66.667 4.58 0.00 38.37 4.57
2820 4747 2.032528 ACATGACAGTGGGCACGG 59.967 61.111 0.00 0.00 36.20 4.94
2832 4759 1.133199 AGAAAAAGGTGGCCCACATGA 60.133 47.619 17.22 0.00 35.86 3.07
2834 4761 1.341080 CAGAAAAAGGTGGCCCACAT 58.659 50.000 17.22 5.46 35.86 3.21
3201 5128 5.505780 ACATAAACAATCGGGATGGAGAAA 58.494 37.500 0.00 0.00 0.00 2.52
3240 5167 5.560966 AGCAAAAACGAAACAGAAGAAGA 57.439 34.783 0.00 0.00 0.00 2.87
3276 5207 2.095263 CCCCGCTGTGAGTACAAAAATG 60.095 50.000 0.00 0.00 36.14 2.32
3277 5208 2.159382 CCCCGCTGTGAGTACAAAAAT 58.841 47.619 0.00 0.00 36.14 1.82
3278 5209 1.600023 CCCCGCTGTGAGTACAAAAA 58.400 50.000 0.00 0.00 36.14 1.94
3279 5210 0.250553 CCCCCGCTGTGAGTACAAAA 60.251 55.000 0.00 0.00 36.14 2.44
3296 5227 0.598158 TACACGAACGAACACTGCCC 60.598 55.000 0.14 0.00 0.00 5.36
3309 5240 3.009916 ACTCTAACCTTCCCTCTACACGA 59.990 47.826 0.00 0.00 0.00 4.35
3310 5241 3.128938 CACTCTAACCTTCCCTCTACACG 59.871 52.174 0.00 0.00 0.00 4.49
3311 5242 3.447944 CCACTCTAACCTTCCCTCTACAC 59.552 52.174 0.00 0.00 0.00 2.90
3312 5243 3.335786 TCCACTCTAACCTTCCCTCTACA 59.664 47.826 0.00 0.00 0.00 2.74
3324 5255 2.093394 GCTCCTCCCTTTCCACTCTAAC 60.093 54.545 0.00 0.00 0.00 2.34
3325 5256 2.188817 GCTCCTCCCTTTCCACTCTAA 58.811 52.381 0.00 0.00 0.00 2.10
3597 5528 3.375443 TAGGGAGGTCAGGCGGAGG 62.375 68.421 0.00 0.00 0.00 4.30
3622 5553 2.787567 GGAGAGCGAGGTAGTGGCC 61.788 68.421 0.00 0.00 0.00 5.36
3726 5657 3.467043 GTCAGTGAGACGTAACGCA 57.533 52.632 0.00 0.00 37.53 5.24
3816 5747 0.669318 GCATTCCCTCGAACACACGA 60.669 55.000 0.00 0.00 40.00 4.35
3893 5824 0.036010 CGCTTCCAAGGGACTGTGAT 60.036 55.000 0.00 0.00 40.86 3.06
3895 5826 0.535102 AACGCTTCCAAGGGACTGTG 60.535 55.000 10.15 0.00 40.86 3.66
3896 5827 1.053424 TAACGCTTCCAAGGGACTGT 58.947 50.000 10.15 0.00 40.86 3.55
3900 5831 1.294138 CCGTAACGCTTCCAAGGGA 59.706 57.895 10.15 0.00 41.06 4.20
3907 5838 0.724785 GCAAACAGCCGTAACGCTTC 60.725 55.000 0.00 0.00 36.82 3.86
4158 6089 2.360165 GGCATTCCACAGGATCACATTC 59.640 50.000 0.00 0.00 0.00 2.67
4225 6156 4.081406 ACCTGCATCTGCTTGAACAAATA 58.919 39.130 3.53 0.00 42.66 1.40
4329 6260 2.847327 AATCCTCCATCCATACTGCG 57.153 50.000 0.00 0.00 0.00 5.18
4359 6290 1.273267 ACATCCTCCCTGCACTCACTA 60.273 52.381 0.00 0.00 0.00 2.74
4410 6341 0.609957 CAATGCTCCCTGACTTGGCA 60.610 55.000 0.00 0.00 37.32 4.92
4463 6394 1.621672 TACCACATCCCGCTCATGCA 61.622 55.000 0.00 0.00 39.64 3.96
4539 6470 1.067295 TCATGTCCTCAAACAGGCCT 58.933 50.000 0.00 0.00 43.08 5.19
4779 6710 2.293184 ACCCCATACACTCATCTCTGGT 60.293 50.000 0.00 0.00 0.00 4.00
4794 6725 0.035439 CGTGAAGTAAGGCACCCCAT 60.035 55.000 0.00 0.00 0.00 4.00
5076 7007 3.262420 GCAGAGTAAGGCGAAAATCTCA 58.738 45.455 0.00 0.00 0.00 3.27
5240 7171 2.099592 CGCAATTGCATTGTAGGGACAT 59.900 45.455 28.77 0.00 42.20 3.06
5270 7201 1.067416 GGTCACAGTGCTCACGACA 59.933 57.895 0.00 0.00 36.20 4.35
5311 7242 0.172578 CAGCGGATCTCGTGTAACCA 59.827 55.000 5.66 0.00 41.72 3.67
5397 7329 7.254590 CCTCACAGCTAATTCTGCTACATAAAC 60.255 40.741 5.69 0.00 38.92 2.01
5411 7343 1.133976 GCATCCACCCTCACAGCTAAT 60.134 52.381 0.00 0.00 0.00 1.73
5575 7507 7.141363 GCCAATACAATACTGATGGATTGTTC 58.859 38.462 11.24 0.01 44.26 3.18
5629 7561 3.213506 TCCAACACAATTGAGGTCACAG 58.786 45.455 13.59 0.00 0.00 3.66
5906 7946 6.394025 AAGCTCCTTCTAATAAGTACTCCG 57.606 41.667 0.00 0.00 0.00 4.63
5943 7984 1.879380 CCGCTCACAAATGGTCTTGAA 59.121 47.619 0.00 0.00 0.00 2.69
6264 8305 4.441792 ACTTTGCATTTTCTTGGTTCCAC 58.558 39.130 0.00 0.00 0.00 4.02
6514 8556 1.202188 GCGATTTGCCCTTTACTCTGC 60.202 52.381 0.00 0.00 37.76 4.26
6630 8684 2.561858 CCTGAGATAGCTGCAGATGCTA 59.438 50.000 20.43 13.54 45.49 3.49
6631 8685 1.345089 CCTGAGATAGCTGCAGATGCT 59.655 52.381 20.43 13.61 43.79 3.79
6632 8686 1.608542 CCCTGAGATAGCTGCAGATGC 60.609 57.143 20.43 8.33 42.50 3.91
6633 8687 1.002201 CCCCTGAGATAGCTGCAGATG 59.998 57.143 20.43 0.00 0.00 2.90
6634 8688 1.350071 CCCCTGAGATAGCTGCAGAT 58.650 55.000 20.43 15.46 0.00 2.90
6635 8689 1.406065 GCCCCTGAGATAGCTGCAGA 61.406 60.000 20.43 0.00 0.00 4.26
6636 8690 1.071128 GCCCCTGAGATAGCTGCAG 59.929 63.158 10.11 10.11 0.00 4.41
6637 8691 1.690283 TGCCCCTGAGATAGCTGCA 60.690 57.895 1.02 0.00 0.00 4.41
6638 8692 1.227793 GTGCCCCTGAGATAGCTGC 60.228 63.158 0.00 0.00 0.00 5.25
6639 8693 1.449353 GGTGCCCCTGAGATAGCTG 59.551 63.158 0.00 0.00 0.00 4.24
6640 8694 2.136878 CGGTGCCCCTGAGATAGCT 61.137 63.158 0.00 0.00 0.00 3.32
6641 8695 2.423446 CGGTGCCCCTGAGATAGC 59.577 66.667 0.00 0.00 0.00 2.97
6825 8879 1.819305 GCCCATTGTGGTTGAGACTGT 60.819 52.381 0.00 0.00 35.17 3.55
6897 8951 6.869695 TCCTTCATCAATCATCAATTGTTGG 58.130 36.000 14.91 2.72 44.36 3.77
7005 9059 7.492077 ACATGCAGGATTCTGATATCTGATA 57.508 36.000 4.84 0.00 43.49 2.15
7006 9060 6.375830 ACATGCAGGATTCTGATATCTGAT 57.624 37.500 4.84 0.00 43.49 2.90
7007 9061 5.820404 ACATGCAGGATTCTGATATCTGA 57.180 39.130 4.84 8.13 43.49 3.27
7008 9062 7.974482 TTAACATGCAGGATTCTGATATCTG 57.026 36.000 4.84 3.61 43.49 2.90
7009 9063 9.887629 CTATTAACATGCAGGATTCTGATATCT 57.112 33.333 4.84 0.00 43.49 1.98
7010 9064 9.664332 ACTATTAACATGCAGGATTCTGATATC 57.336 33.333 4.84 0.00 43.49 1.63
7071 9132 2.907910 ACAACGATCAAAGCAGATGC 57.092 45.000 0.00 0.00 42.49 3.91
7076 9137 7.960738 GCTAGTTTAATAACAACGATCAAAGCA 59.039 33.333 0.00 0.00 36.70 3.91
7082 9143 9.434559 GGAAATGCTAGTTTAATAACAACGATC 57.565 33.333 0.00 0.00 36.70 3.69
7083 9144 9.174166 AGGAAATGCTAGTTTAATAACAACGAT 57.826 29.630 0.00 0.00 36.70 3.73
7084 9145 8.447833 CAGGAAATGCTAGTTTAATAACAACGA 58.552 33.333 0.00 0.00 36.70 3.85
7085 9146 7.696453 CCAGGAAATGCTAGTTTAATAACAACG 59.304 37.037 0.00 0.00 36.70 4.10
7103 9165 8.593945 TCTGAACTATAAAATTGCCAGGAAAT 57.406 30.769 0.00 0.00 0.00 2.17
7166 9262 5.606348 TGTTTGGTAAAGGCAAGAAATGT 57.394 34.783 0.00 0.00 0.00 2.71
7172 9268 5.746721 GTGTACTTTGTTTGGTAAAGGCAAG 59.253 40.000 0.00 0.00 38.99 4.01
7174 9270 4.951094 AGTGTACTTTGTTTGGTAAAGGCA 59.049 37.500 0.00 0.00 38.99 4.75
7203 9299 8.745464 TGTTGTGAGTTAACAAAAACCTAAAC 57.255 30.769 8.61 2.66 41.52 2.01
7246 9343 1.062294 CGAGCTTTGAAGAGCATGAGC 59.938 52.381 0.00 0.00 45.12 4.26
7469 10129 4.255833 AGAACTGACTCTGAGCTCTTTG 57.744 45.455 16.19 7.05 0.00 2.77
7473 10133 3.658757 ACAAGAACTGACTCTGAGCTC 57.341 47.619 6.82 6.82 0.00 4.09
7501 10161 3.192001 ACATACGCAAGGAGACGTTAAGA 59.808 43.478 0.00 0.00 43.35 2.10
7533 10208 5.506483 CGGATGTAAACACCACATGTCAAAA 60.506 40.000 0.00 0.00 42.31 2.44
7543 10218 2.898612 TCCTACACGGATGTAAACACCA 59.101 45.455 0.00 0.00 40.84 4.17
7557 10232 3.610585 GCTAGATCGATGTGCTCCTACAC 60.611 52.174 0.54 0.00 41.10 2.90
7570 10245 1.153107 TTCGTCGGGGCTAGATCGA 60.153 57.895 0.00 0.00 0.00 3.59
7579 10254 0.650512 CATCATTTCGTTCGTCGGGG 59.349 55.000 0.00 0.00 40.32 5.73
7697 10372 1.352352 CCTGTCTTGGGTGGAGAATGT 59.648 52.381 0.00 0.00 0.00 2.71
7808 10486 4.206375 TGAAAGAATGCACCAAAGTCTCA 58.794 39.130 0.00 0.00 0.00 3.27
7865 10543 8.217778 TCTTTGTTTTGTTTTGCTTTTACTTCG 58.782 29.630 0.00 0.00 0.00 3.79
8000 10678 6.089150 GCGACTTAACTACAGTAAAAGACAGG 59.911 42.308 9.98 0.00 0.00 4.00
8003 10681 6.128982 GGTGCGACTTAACTACAGTAAAAGAC 60.129 42.308 9.98 4.90 0.00 3.01
8005 10683 5.119743 GGGTGCGACTTAACTACAGTAAAAG 59.880 44.000 0.00 3.90 0.00 2.27
8007 10685 4.281688 AGGGTGCGACTTAACTACAGTAAA 59.718 41.667 0.00 0.00 0.00 2.01
8008 10686 3.828451 AGGGTGCGACTTAACTACAGTAA 59.172 43.478 0.00 0.00 0.00 2.24
8010 10688 2.029290 CAGGGTGCGACTTAACTACAGT 60.029 50.000 0.00 0.00 0.00 3.55
8011 10689 2.607187 CAGGGTGCGACTTAACTACAG 58.393 52.381 0.00 0.00 0.00 2.74
8012 10690 1.274167 CCAGGGTGCGACTTAACTACA 59.726 52.381 0.00 0.00 0.00 2.74
8013 10691 1.547372 TCCAGGGTGCGACTTAACTAC 59.453 52.381 0.00 0.00 0.00 2.73
8041 10719 9.920133 GATAAGATAATAGCAGAACAGACATGA 57.080 33.333 0.00 0.00 0.00 3.07
8042 10720 9.926158 AGATAAGATAATAGCAGAACAGACATG 57.074 33.333 0.00 0.00 0.00 3.21
8047 10725 9.926158 ACATGAGATAAGATAATAGCAGAACAG 57.074 33.333 0.00 0.00 0.00 3.16
8052 10730 9.926158 AACAGACATGAGATAAGATAATAGCAG 57.074 33.333 0.00 0.00 0.00 4.24
8057 10735 9.624373 AGCAAAACAGACATGAGATAAGATAAT 57.376 29.630 0.00 0.00 0.00 1.28
8065 10743 9.624373 AAGATAATAGCAAAACAGACATGAGAT 57.376 29.630 0.00 0.00 0.00 2.75
8091 10769 6.510879 ACACAATTCGACAGAGATACAGTA 57.489 37.500 0.00 0.00 0.00 2.74
8092 10770 5.392767 ACACAATTCGACAGAGATACAGT 57.607 39.130 0.00 0.00 0.00 3.55
8093 10771 7.812309 TTTACACAATTCGACAGAGATACAG 57.188 36.000 0.00 0.00 0.00 2.74
8095 10773 8.407457 TCATTTACACAATTCGACAGAGATAC 57.593 34.615 0.00 0.00 0.00 2.24
8115 10814 3.452878 TGGGCTTCCATCCAATTCATTT 58.547 40.909 0.00 0.00 35.21 2.32
8137 10839 4.489771 CCACCGACCATGGAGGCC 62.490 72.222 21.47 0.00 43.14 5.19
8141 10843 1.676968 CAGAACCACCGACCATGGA 59.323 57.895 21.47 0.00 39.87 3.41
8146 10854 1.079336 GCTACCAGAACCACCGACC 60.079 63.158 0.00 0.00 0.00 4.79
8202 10910 2.038975 AGCTACTTCCCCTCGCCA 59.961 61.111 0.00 0.00 0.00 5.69
8213 10921 3.203412 CGCGTCTCGGGAGCTACT 61.203 66.667 0.00 0.00 42.31 2.57
8214 10922 3.200593 TCGCGTCTCGGGAGCTAC 61.201 66.667 5.77 0.00 43.39 3.58
8255 10975 1.669760 CAAGCGTTGCGTAGGGGAA 60.670 57.895 0.00 0.00 0.00 3.97
8256 10976 2.047655 CAAGCGTTGCGTAGGGGA 60.048 61.111 0.00 0.00 0.00 4.81
8283 11003 0.953960 AAACGAGGTTCCGCATCACC 60.954 55.000 0.00 0.00 0.00 4.02
8310 11031 5.106515 GGGTCAGACTTTGAATTAGTGAAGC 60.107 44.000 0.00 0.00 37.61 3.86
8314 11035 5.409826 GTCAGGGTCAGACTTTGAATTAGTG 59.590 44.000 0.00 0.00 37.61 2.74
8368 11089 1.032794 CTGTATCTCGCCACTGCCTA 58.967 55.000 0.00 0.00 0.00 3.93
8388 11109 6.476706 ACTTCAAAAACATTTACTTGCTCTGC 59.523 34.615 0.00 0.00 0.00 4.26
8413 11134 0.687757 ATTAGCCTCAGACGCCCTCA 60.688 55.000 0.00 0.00 0.00 3.86
8432 11153 4.139510 TTGCAGCTTGTCGCAAGA 57.860 50.000 19.38 0.70 42.93 3.02
8444 11165 3.434319 AATGGACCGCGCTTGCAG 61.434 61.111 5.56 0.00 39.07 4.41
8550 11271 2.674754 GGCCCGTTCCCATCTTGA 59.325 61.111 0.00 0.00 0.00 3.02
8551 11272 2.824041 CGGCCCGTTCCCATCTTG 60.824 66.667 0.00 0.00 0.00 3.02
8570 11291 3.912745 AATGGCCCGACGGGTTGAC 62.913 63.158 32.76 20.56 46.51 3.18
8571 11292 3.642503 AATGGCCCGACGGGTTGA 61.643 61.111 32.76 17.77 46.51 3.18
8572 11293 3.439540 CAATGGCCCGACGGGTTG 61.440 66.667 32.76 24.46 46.51 3.77
8573 11294 4.733542 CCAATGGCCCGACGGGTT 62.734 66.667 32.76 17.61 46.51 4.11
8584 11305 2.779742 TTTCTGGGTCGGGCCAATGG 62.780 60.000 4.39 0.00 39.65 3.16
8585 11306 0.897863 TTTTCTGGGTCGGGCCAATG 60.898 55.000 4.39 0.00 39.65 2.82
8586 11307 0.041090 ATTTTCTGGGTCGGGCCAAT 59.959 50.000 4.39 0.00 39.65 3.16
8587 11308 0.610785 GATTTTCTGGGTCGGGCCAA 60.611 55.000 4.39 0.00 39.65 4.52
8588 11309 1.001393 GATTTTCTGGGTCGGGCCA 60.001 57.895 4.39 0.00 39.65 5.36
8589 11310 2.112815 CGATTTTCTGGGTCGGGCC 61.113 63.158 0.00 0.00 0.00 5.80
8590 11311 1.078708 TCGATTTTCTGGGTCGGGC 60.079 57.895 0.00 0.00 36.14 6.13
8591 11312 0.462047 CCTCGATTTTCTGGGTCGGG 60.462 60.000 0.00 0.00 36.14 5.14
8592 11313 1.090052 GCCTCGATTTTCTGGGTCGG 61.090 60.000 0.00 0.00 36.14 4.79
8593 11314 1.090052 GGCCTCGATTTTCTGGGTCG 61.090 60.000 0.00 0.00 36.75 4.79
8594 11315 0.035439 TGGCCTCGATTTTCTGGGTC 60.035 55.000 3.32 0.00 0.00 4.46
8595 11316 0.625849 ATGGCCTCGATTTTCTGGGT 59.374 50.000 3.32 0.00 0.00 4.51
8596 11317 1.406539 CAATGGCCTCGATTTTCTGGG 59.593 52.381 3.32 0.00 0.00 4.45
8597 11318 1.406539 CCAATGGCCTCGATTTTCTGG 59.593 52.381 3.32 0.00 0.00 3.86
8598 11319 2.368439 TCCAATGGCCTCGATTTTCTG 58.632 47.619 3.32 0.00 0.00 3.02
8599 11320 2.806945 TCCAATGGCCTCGATTTTCT 57.193 45.000 3.32 0.00 0.00 2.52
8600 11321 3.004106 CAGATCCAATGGCCTCGATTTTC 59.996 47.826 3.32 0.00 0.00 2.29
8601 11322 2.954318 CAGATCCAATGGCCTCGATTTT 59.046 45.455 3.32 0.00 0.00 1.82
8602 11323 2.092212 ACAGATCCAATGGCCTCGATTT 60.092 45.455 3.32 0.00 0.00 2.17
8603 11324 1.492176 ACAGATCCAATGGCCTCGATT 59.508 47.619 3.32 0.00 0.00 3.34
8604 11325 1.071385 GACAGATCCAATGGCCTCGAT 59.929 52.381 3.32 0.00 0.00 3.59
8605 11326 0.465705 GACAGATCCAATGGCCTCGA 59.534 55.000 3.32 0.00 0.00 4.04
8606 11327 0.877649 CGACAGATCCAATGGCCTCG 60.878 60.000 3.32 0.00 0.00 4.63
8607 11328 0.533755 CCGACAGATCCAATGGCCTC 60.534 60.000 3.32 0.00 0.00 4.70
8608 11329 1.528824 CCGACAGATCCAATGGCCT 59.471 57.895 3.32 0.00 0.00 5.19
8609 11330 1.526917 CCCGACAGATCCAATGGCC 60.527 63.158 0.00 0.00 0.00 5.36
8610 11331 0.815615 GACCCGACAGATCCAATGGC 60.816 60.000 0.00 0.00 0.00 4.40
8611 11332 0.541392 TGACCCGACAGATCCAATGG 59.459 55.000 0.00 0.00 0.00 3.16
8612 11333 1.945387 CTGACCCGACAGATCCAATG 58.055 55.000 0.00 0.00 39.94 2.82
8613 11334 0.179000 GCTGACCCGACAGATCCAAT 59.821 55.000 0.00 0.00 39.94 3.16
8614 11335 1.596934 GCTGACCCGACAGATCCAA 59.403 57.895 0.00 0.00 39.94 3.53
8615 11336 2.359169 GGCTGACCCGACAGATCCA 61.359 63.158 0.00 0.00 39.94 3.41
8616 11337 2.022240 GAGGCTGACCCGACAGATCC 62.022 65.000 0.00 0.00 39.94 3.36
8617 11338 1.439644 GAGGCTGACCCGACAGATC 59.560 63.158 0.00 0.00 39.94 2.75
8618 11339 2.418910 CGAGGCTGACCCGACAGAT 61.419 63.158 0.00 0.00 39.94 2.90
8619 11340 2.473891 TACGAGGCTGACCCGACAGA 62.474 60.000 0.00 0.00 39.94 3.41
8620 11341 1.384989 ATACGAGGCTGACCCGACAG 61.385 60.000 0.00 0.00 39.21 3.51
8621 11342 1.379443 ATACGAGGCTGACCCGACA 60.379 57.895 0.00 0.00 39.21 4.35
8622 11343 1.065928 CATACGAGGCTGACCCGAC 59.934 63.158 0.00 0.00 39.21 4.79
8623 11344 2.125326 CCATACGAGGCTGACCCGA 61.125 63.158 0.00 0.00 39.21 5.14
8624 11345 2.417516 CCATACGAGGCTGACCCG 59.582 66.667 0.00 0.00 39.21 5.28
8625 11346 1.122019 ATCCCATACGAGGCTGACCC 61.122 60.000 0.00 0.00 36.11 4.46
8626 11347 0.759346 AATCCCATACGAGGCTGACC 59.241 55.000 0.00 0.00 0.00 4.02
8627 11348 1.603172 CGAATCCCATACGAGGCTGAC 60.603 57.143 0.00 0.00 0.00 3.51
8628 11349 0.673985 CGAATCCCATACGAGGCTGA 59.326 55.000 0.00 0.00 0.00 4.26
8629 11350 0.319900 CCGAATCCCATACGAGGCTG 60.320 60.000 0.00 0.00 0.00 4.85
8630 11351 0.759436 ACCGAATCCCATACGAGGCT 60.759 55.000 0.00 0.00 0.00 4.58
8631 11352 0.319641 GACCGAATCCCATACGAGGC 60.320 60.000 0.00 0.00 0.00 4.70
8632 11353 0.317479 GGACCGAATCCCATACGAGG 59.683 60.000 0.00 0.00 42.46 4.63
8633 11354 3.888093 GGACCGAATCCCATACGAG 57.112 57.895 0.00 0.00 42.46 4.18
8642 11363 3.969995 GGCTCTACTGGACCGAATC 57.030 57.895 0.00 0.00 0.00 2.52
8651 11372 0.818296 AACTAGTGCCGGCTCTACTG 59.182 55.000 29.47 23.35 0.00 2.74
8652 11373 0.818296 CAACTAGTGCCGGCTCTACT 59.182 55.000 29.47 24.91 0.00 2.57
8653 11374 0.815734 TCAACTAGTGCCGGCTCTAC 59.184 55.000 29.47 19.44 0.00 2.59
8654 11375 0.815734 GTCAACTAGTGCCGGCTCTA 59.184 55.000 30.54 30.54 0.00 2.43
8655 11376 1.592223 GTCAACTAGTGCCGGCTCT 59.408 57.895 31.57 31.57 0.00 4.09
8656 11377 1.448013 GGTCAACTAGTGCCGGCTC 60.448 63.158 29.70 25.08 0.00 4.70
8657 11378 2.663196 GGTCAACTAGTGCCGGCT 59.337 61.111 29.70 11.31 0.00 5.52
8658 11379 2.436115 GGGTCAACTAGTGCCGGC 60.436 66.667 22.73 22.73 0.00 6.13
8659 11380 0.035439 AATGGGTCAACTAGTGCCGG 60.035 55.000 0.00 0.00 0.00 6.13
8660 11381 1.086696 CAATGGGTCAACTAGTGCCG 58.913 55.000 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.