Multiple sequence alignment - TraesCS5B01G248700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G248700 chr5B 100.000 6009 0 0 1 6009 430754904 430748896 0.000000e+00 11097.0
1 TraesCS5B01G248700 chr5B 86.923 1690 126 47 3598 5207 430671794 430673468 0.000000e+00 1808.0
2 TraesCS5B01G248700 chr5B 89.153 1134 97 14 2475 3596 430670532 430671651 0.000000e+00 1389.0
3 TraesCS5B01G248700 chr5B 87.867 783 42 19 1693 2469 430669760 430670495 0.000000e+00 870.0
4 TraesCS5B01G248700 chr5B 84.910 888 87 22 758 1620 430668373 430669238 0.000000e+00 854.0
5 TraesCS5B01G248700 chr5B 84.789 710 95 11 6 708 430618416 430619119 0.000000e+00 701.0
6 TraesCS5B01G248700 chr5B 83.961 717 97 16 2 708 430632121 430632829 0.000000e+00 671.0
7 TraesCS5B01G248700 chr5B 84.421 674 89 13 43 708 430627683 430628348 0.000000e+00 649.0
8 TraesCS5B01G248700 chr5B 82.296 514 74 10 879 1377 430629165 430629676 4.300000e-116 429.0
9 TraesCS5B01G248700 chr5A 95.025 2995 110 18 2567 5532 466038561 466035577 0.000000e+00 4669.0
10 TraesCS5B01G248700 chr5A 89.605 1645 128 25 37 1657 466041754 466040129 0.000000e+00 2050.0
11 TraesCS5B01G248700 chr5A 88.616 1669 112 33 3598 5207 465993263 465994912 0.000000e+00 1958.0
12 TraesCS5B01G248700 chr5A 89.549 1043 82 12 2570 3596 465992089 465993120 0.000000e+00 1297.0
13 TraesCS5B01G248700 chr5A 85.137 1164 126 24 481 1620 465987722 465988862 0.000000e+00 1147.0
14 TraesCS5B01G248700 chr5A 87.913 786 41 20 1697 2471 466039745 466039003 0.000000e+00 876.0
15 TraesCS5B01G248700 chr5A 86.245 807 50 32 1674 2466 465991137 465991896 0.000000e+00 819.0
16 TraesCS5B01G248700 chr5A 81.455 825 126 15 701 1502 465682049 465682869 0.000000e+00 651.0
17 TraesCS5B01G248700 chr5A 81.266 790 128 9 701 1473 465643255 465644041 6.610000e-174 621.0
18 TraesCS5B01G248700 chr5A 92.015 263 17 2 2211 2472 466038899 466038640 3.420000e-97 366.0
19 TraesCS5B01G248700 chr5A 90.071 141 14 0 5574 5714 466035565 466035425 3.700000e-42 183.0
20 TraesCS5B01G248700 chr5A 93.000 100 7 0 5713 5812 466035369 466035270 4.850000e-31 147.0
21 TraesCS5B01G248700 chr5A 90.909 44 3 1 2251 2293 466038958 466038915 2.340000e-04 58.4
22 TraesCS5B01G248700 chr5D 90.276 2499 155 47 1 2472 364768297 364765860 0.000000e+00 3188.0
23 TraesCS5B01G248700 chr5D 96.435 1599 46 3 2567 4155 364765781 364764184 0.000000e+00 2627.0
24 TraesCS5B01G248700 chr5D 92.352 1556 75 11 4147 5686 364764095 364762568 0.000000e+00 2174.0
25 TraesCS5B01G248700 chr5D 87.174 1536 139 33 113 1620 364663280 364664785 0.000000e+00 1692.0
26 TraesCS5B01G248700 chr5D 87.927 1317 96 27 3598 4876 364667250 364668541 0.000000e+00 1493.0
27 TraesCS5B01G248700 chr5D 89.388 1046 86 8 2567 3596 364666071 364667107 0.000000e+00 1293.0
28 TraesCS5B01G248700 chr5D 88.035 794 54 24 1683 2466 364665222 364665984 0.000000e+00 902.0
29 TraesCS5B01G248700 chr5D 83.192 827 110 18 701 1502 364554271 364555093 0.000000e+00 730.0
30 TraesCS5B01G248700 chr5D 83.010 824 115 12 701 1502 364551184 364552004 0.000000e+00 723.0
31 TraesCS5B01G248700 chr5D 82.792 831 110 17 701 1502 364559724 364560550 0.000000e+00 712.0
32 TraesCS5B01G248700 chr5D 82.446 826 119 16 701 1502 364563100 364563923 0.000000e+00 699.0
33 TraesCS5B01G248700 chr5D 84.605 708 94 12 6 708 364550190 364550887 0.000000e+00 689.0
34 TraesCS5B01G248700 chr5D 84.218 716 97 14 2 708 364558729 364559437 0.000000e+00 682.0
35 TraesCS5B01G248700 chr5D 82.754 719 106 16 2 708 364566746 364567458 5.110000e-175 625.0
36 TraesCS5B01G248700 chr5D 86.813 546 51 11 4459 4987 30615833 30615292 1.870000e-164 590.0
37 TraesCS5B01G248700 chr5D 84.397 423 43 15 3065 3473 30673524 30673111 1.570000e-105 394.0
38 TraesCS5B01G248700 chr5D 87.113 194 20 2 2817 3005 30673727 30673534 1.310000e-51 215.0
39 TraesCS5B01G248700 chr5D 80.836 287 36 11 5046 5314 30613890 30613605 2.190000e-49 207.0
40 TraesCS5B01G248700 chr1A 86.735 196 6 8 1702 1895 439339840 439339663 3.670000e-47 200.0
41 TraesCS5B01G248700 chr7D 84.211 57 9 0 5756 5812 319923996 319924052 8.410000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G248700 chr5B 430748896 430754904 6008 True 11097.000000 11097 100.000000 1 6009 1 chr5B.!!$R1 6008
1 TraesCS5B01G248700 chr5B 430668373 430673468 5095 False 1230.250000 1808 87.213250 758 5207 4 chr5B.!!$F3 4449
2 TraesCS5B01G248700 chr5B 430618416 430619119 703 False 701.000000 701 84.789000 6 708 1 chr5B.!!$F1 702
3 TraesCS5B01G248700 chr5B 430627683 430632829 5146 False 583.000000 671 83.559333 2 1377 3 chr5B.!!$F2 1375
4 TraesCS5B01G248700 chr5A 465987722 465994912 7190 False 1305.250000 1958 87.386750 481 5207 4 chr5A.!!$F3 4726
5 TraesCS5B01G248700 chr5A 466035270 466041754 6484 True 1192.771429 4669 91.219714 37 5812 7 chr5A.!!$R1 5775
6 TraesCS5B01G248700 chr5A 465682049 465682869 820 False 651.000000 651 81.455000 701 1502 1 chr5A.!!$F2 801
7 TraesCS5B01G248700 chr5A 465643255 465644041 786 False 621.000000 621 81.266000 701 1473 1 chr5A.!!$F1 772
8 TraesCS5B01G248700 chr5D 364762568 364768297 5729 True 2663.000000 3188 93.021000 1 5686 3 chr5D.!!$R3 5685
9 TraesCS5B01G248700 chr5D 364663280 364668541 5261 False 1345.000000 1692 88.131000 113 4876 4 chr5D.!!$F2 4763
10 TraesCS5B01G248700 chr5D 364550190 364567458 17268 False 694.285714 730 83.288143 2 1502 7 chr5D.!!$F1 1500
11 TraesCS5B01G248700 chr5D 30613605 30615833 2228 True 398.500000 590 83.824500 4459 5314 2 chr5D.!!$R1 855
12 TraesCS5B01G248700 chr5D 30673111 30673727 616 True 304.500000 394 85.755000 2817 3473 2 chr5D.!!$R2 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 674 0.321122 CTCTTGGGCGCTCTTGTCTT 60.321 55.0 9.62 0.00 0.00 3.01 F
1259 10783 0.374758 ATTTCTACTGCATGCGCGTG 59.625 50.0 25.25 25.25 42.97 5.34 F
2527 18574 0.395586 ACACAAGACCAAAGGCTGCA 60.396 50.0 0.50 0.00 0.00 4.41 F
3184 19366 0.951558 ATGTGCAGTGAACCGGAAAC 59.048 50.0 9.46 2.67 0.00 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1614 16874 1.141053 AGTCAACTGGGAACTCGCTTT 59.859 47.619 0.00 0.0 0.00 3.51 R
2593 18751 1.999648 TGCAGGCTGTCCTTTTTCAT 58.000 45.000 17.16 0.0 41.93 2.57 R
3628 19970 1.280746 CGCAGAGGTTGTGTGCTTG 59.719 57.895 0.00 0.0 43.43 4.01 R
5059 24440 0.878416 GCATGCTTCGGGTTGTTGTA 59.122 50.000 11.37 0.0 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 3.861276 TTGTTCGGTCGTATCATCTGT 57.139 42.857 0.00 0.00 0.00 3.41
158 168 4.314961 TGGTCATGTTGTACTCATGTGTC 58.685 43.478 21.54 15.77 42.03 3.67
159 169 3.684788 GGTCATGTTGTACTCATGTGTCC 59.315 47.826 21.54 18.70 42.03 4.02
160 170 3.684788 GTCATGTTGTACTCATGTGTCCC 59.315 47.826 21.54 0.00 42.03 4.46
161 171 3.326297 TCATGTTGTACTCATGTGTCCCA 59.674 43.478 21.54 0.17 42.03 4.37
162 172 3.120321 TGTTGTACTCATGTGTCCCAC 57.880 47.619 3.19 0.00 34.56 4.61
174 184 3.838565 TGTGTCCCACATGTTACCATTT 58.161 40.909 0.00 0.00 39.62 2.32
503 519 5.625311 CCTTTATTTGCTCGTTTCTTGTGAC 59.375 40.000 0.00 0.00 0.00 3.67
654 674 0.321122 CTCTTGGGCGCTCTTGTCTT 60.321 55.000 9.62 0.00 0.00 3.01
690 3795 0.531974 TGTCTCACACCCAAGAACGC 60.532 55.000 0.00 0.00 0.00 4.84
732 4444 7.406553 TCAAACTTTTGTTACTCGTCATTCAG 58.593 34.615 1.75 0.00 42.67 3.02
861 4577 5.365619 CCACCATAAATAGACCGCTTTACT 58.634 41.667 0.00 0.00 0.00 2.24
1166 10681 0.687354 AGGAGCAAGGACGATGTTGT 59.313 50.000 0.00 0.00 0.00 3.32
1205 10729 0.603975 GCCGATTCCATCAGGTAGCC 60.604 60.000 0.00 0.00 35.89 3.93
1259 10783 0.374758 ATTTCTACTGCATGCGCGTG 59.625 50.000 25.25 25.25 42.97 5.34
1262 10786 1.147557 TCTACTGCATGCGCGTGATG 61.148 55.000 32.94 23.83 42.97 3.07
1278 10802 3.725895 CGTGATGTGCTTCAAATTCCGAG 60.726 47.826 0.00 0.00 0.00 4.63
1420 14348 8.798153 GCTGGAAAAAGAACATTAATGTATTCG 58.202 33.333 21.07 9.95 40.80 3.34
1473 14413 1.024046 AAGAATGCGCGCATACACCA 61.024 50.000 43.22 17.87 35.31 4.17
1492 14439 2.731976 CCACGCTGTCACTTTACTCTTC 59.268 50.000 0.00 0.00 0.00 2.87
1596 14618 1.229951 TCTGACCAGAAGGGCCCAT 60.230 57.895 27.56 13.79 45.14 4.00
1614 16874 3.118408 CCCATCAAATTCGTAGAGGGTCA 60.118 47.826 0.00 0.00 38.43 4.02
1773 17385 2.269241 GGCTTCTTCTCCCCCGTG 59.731 66.667 0.00 0.00 0.00 4.94
1786 17398 3.625897 CCGTGGCACTGGACTGGA 61.626 66.667 19.35 0.00 0.00 3.86
1802 17414 2.034221 GAGTGGAGTTGGCACCCC 59.966 66.667 0.00 0.00 0.00 4.95
1805 17417 3.256960 TGGAGTTGGCACCCCTCC 61.257 66.667 16.37 16.37 44.16 4.30
1934 17554 2.264794 CGTGGCGGCTAACCTTCT 59.735 61.111 11.43 0.00 0.00 2.85
1935 17555 1.375523 CGTGGCGGCTAACCTTCTT 60.376 57.895 11.43 0.00 0.00 2.52
1936 17556 1.359459 CGTGGCGGCTAACCTTCTTC 61.359 60.000 11.43 0.00 0.00 2.87
1992 17615 2.143122 GAACCATGCTCAACGTCAAGA 58.857 47.619 0.00 0.00 0.00 3.02
2047 17670 7.382898 GGGTGAGTCAATTTTGCCTTTTAATA 58.617 34.615 0.00 0.00 0.00 0.98
2048 17671 7.875554 GGGTGAGTCAATTTTGCCTTTTAATAA 59.124 33.333 0.00 0.00 0.00 1.40
2049 17672 9.435688 GGTGAGTCAATTTTGCCTTTTAATAAT 57.564 29.630 0.00 0.00 0.00 1.28
2121 17750 6.648879 TCAGTTTTATGGTTTTCCTCCAAG 57.351 37.500 0.00 0.00 41.38 3.61
2177 17807 3.438087 AGAGAACACGAAAGATGCCATTG 59.562 43.478 0.00 0.00 0.00 2.82
2187 17817 5.446473 CGAAAGATGCCATTGTAGACTTCAC 60.446 44.000 0.00 0.00 0.00 3.18
2285 18290 7.093771 ACCCATGCTGGAGAAGTTAATTTTTAG 60.094 37.037 4.00 0.00 40.96 1.85
2286 18291 7.093771 CCCATGCTGGAGAAGTTAATTTTTAGT 60.094 37.037 4.00 0.00 40.96 2.24
2287 18292 8.956426 CCATGCTGGAGAAGTTAATTTTTAGTA 58.044 33.333 0.00 0.00 40.96 1.82
2315 18321 5.593679 TTGACTAGGTAGGAGTAACATGC 57.406 43.478 0.00 0.00 0.00 4.06
2343 18351 5.532557 TGAGGATAGAATACATTGCTGTCG 58.467 41.667 0.00 0.00 36.79 4.35
2458 18470 0.731417 ATGCATTGAGACGCAAGCTC 59.269 50.000 0.00 0.00 42.37 4.09
2524 18571 2.435372 TGAACACAAGACCAAAGGCT 57.565 45.000 0.00 0.00 0.00 4.58
2526 18573 0.746659 AACACAAGACCAAAGGCTGC 59.253 50.000 0.00 0.00 0.00 5.25
2527 18574 0.395586 ACACAAGACCAAAGGCTGCA 60.396 50.000 0.50 0.00 0.00 4.41
2536 18589 2.170166 CCAAAGGCTGCAGTTCCATAA 58.830 47.619 16.64 0.00 0.00 1.90
2546 18599 6.371825 GGCTGCAGTTCCATAAATATAGTACC 59.628 42.308 16.64 0.00 0.00 3.34
2547 18600 7.162082 GCTGCAGTTCCATAAATATAGTACCT 58.838 38.462 16.64 0.00 0.00 3.08
2548 18601 7.118390 GCTGCAGTTCCATAAATATAGTACCTG 59.882 40.741 16.64 0.00 0.00 4.00
2549 18602 7.450074 TGCAGTTCCATAAATATAGTACCTGG 58.550 38.462 0.00 0.00 0.00 4.45
2550 18603 7.291416 TGCAGTTCCATAAATATAGTACCTGGA 59.709 37.037 0.00 0.00 0.00 3.86
2551 18604 8.154856 GCAGTTCCATAAATATAGTACCTGGAA 58.845 37.037 0.00 6.83 38.58 3.53
2554 18607 8.570038 TTCCATAAATATAGTACCTGGAACCA 57.430 34.615 0.00 0.00 36.62 3.67
2555 18608 8.570038 TCCATAAATATAGTACCTGGAACCAA 57.430 34.615 0.00 0.00 0.00 3.67
2556 18609 8.656806 TCCATAAATATAGTACCTGGAACCAAG 58.343 37.037 0.00 0.00 0.00 3.61
2557 18610 8.437575 CCATAAATATAGTACCTGGAACCAAGT 58.562 37.037 0.00 0.74 0.00 3.16
2558 18611 9.847224 CATAAATATAGTACCTGGAACCAAGTT 57.153 33.333 0.00 0.00 0.00 2.66
2559 18612 9.847224 ATAAATATAGTACCTGGAACCAAGTTG 57.153 33.333 0.00 0.00 0.00 3.16
2562 18615 6.691255 ATAGTACCTGGAACCAAGTTGTTA 57.309 37.500 0.00 0.00 0.00 2.41
2573 18731 8.322828 TGGAACCAAGTTGTTAGCAATATAGTA 58.677 33.333 1.45 0.00 36.92 1.82
2625 18783 1.413445 AGCCTGCATTTTTGCTCACAA 59.587 42.857 0.00 0.00 35.49 3.33
2654 18812 1.460504 CGTAGGTCTGTGCTGGACTA 58.539 55.000 0.00 0.00 34.47 2.59
2665 18823 2.731976 GTGCTGGACTAAGTTTCGAGTG 59.268 50.000 0.00 0.00 0.00 3.51
2667 18825 3.258372 TGCTGGACTAAGTTTCGAGTGAT 59.742 43.478 0.00 0.00 0.00 3.06
2668 18826 3.860536 GCTGGACTAAGTTTCGAGTGATC 59.139 47.826 0.00 0.00 0.00 2.92
2847 19016 6.873997 TCTTATGTTTCCGACAGTCATGTAT 58.126 36.000 0.41 0.00 42.62 2.29
2951 19121 5.853936 TCTATCGGGAATCTTGTACCATTG 58.146 41.667 0.00 0.00 0.00 2.82
3184 19366 0.951558 ATGTGCAGTGAACCGGAAAC 59.048 50.000 9.46 2.67 0.00 2.78
3388 19575 5.627499 TGTTTTGATGTCAGATAGGTTGC 57.373 39.130 0.00 0.00 0.00 4.17
3532 19732 1.156736 GTGTGGGTCAGGACAAATCG 58.843 55.000 1.41 0.00 0.00 3.34
3558 19758 6.462500 ACATATTAGTTGCTATCTGCTCCAG 58.538 40.000 0.00 0.00 43.37 3.86
3628 19970 4.808364 GTGAGAACAGAGCTCCATACAATC 59.192 45.833 10.93 1.18 0.00 2.67
4654 22665 6.207417 TCAATGTTCAGTTCCTCATCCTTTTC 59.793 38.462 0.00 0.00 0.00 2.29
4938 22953 0.387750 GCTGAAGCCTCGCCAAAAAG 60.388 55.000 0.00 0.00 34.31 2.27
5015 24393 1.142465 CCAAGGAGACCTGATGGGATG 59.858 57.143 0.00 0.00 38.76 3.51
5087 24470 1.600957 CCCGAAGCATGCAAGTATCAG 59.399 52.381 21.98 2.44 0.00 2.90
5209 24604 6.041069 GTCTCAAGGTATATGCTACCTGAAGT 59.959 42.308 4.04 0.00 46.52 3.01
5212 24611 7.630082 TCAAGGTATATGCTACCTGAAGTTTT 58.370 34.615 4.04 0.00 46.52 2.43
5288 24696 7.390440 TGAATCTGTTTCAGTATTACCTGTTGG 59.610 37.037 0.00 0.00 39.44 3.77
5452 25060 0.955905 GAAACCCTAAAACCGCTGCA 59.044 50.000 0.00 0.00 0.00 4.41
5465 25073 1.818674 CCGCTGCAACCTTCCTTTTAT 59.181 47.619 0.00 0.00 0.00 1.40
5492 25100 3.470888 GCTCTAGGGAAGCCGGCA 61.471 66.667 31.54 5.25 0.00 5.69
5553 25161 3.381045 CGATGCGTATGAGGAAGCTTTA 58.619 45.455 0.00 0.00 0.00 1.85
5564 25172 1.003696 GGAAGCTTTAGTGAGGTGGCT 59.996 52.381 0.00 0.00 0.00 4.75
5567 25175 1.168714 GCTTTAGTGAGGTGGCTTGG 58.831 55.000 0.00 0.00 0.00 3.61
5569 25177 1.351017 CTTTAGTGAGGTGGCTTGGGA 59.649 52.381 0.00 0.00 0.00 4.37
5580 25188 2.125552 CTTGGGATGCGACGCTCA 60.126 61.111 22.08 11.03 0.00 4.26
5606 25214 3.846586 ACGAAGTGGAGGTGCACCTTG 62.847 57.143 37.98 21.24 44.48 3.61
5613 25221 1.853428 AGGTGCACCTTGGGATTGT 59.147 52.632 33.20 7.71 46.09 2.71
5648 25256 2.657237 GGGTCGAGACTGTGGTGG 59.343 66.667 3.09 0.00 0.00 4.61
5724 25389 0.892755 TGGGGTGCTACTCGTTACTG 59.107 55.000 0.00 0.00 0.00 2.74
5726 25391 0.459759 GGGTGCTACTCGTTACTGGC 60.460 60.000 0.00 0.00 0.00 4.85
5775 25440 7.648142 TCATATTTCTTTGTTGAAGGTGTCAC 58.352 34.615 0.00 0.00 35.39 3.67
5777 25442 2.285083 TCTTTGTTGAAGGTGTCACCG 58.715 47.619 16.44 0.00 44.90 4.94
5799 25464 2.768344 GATTCGGCCCCTCTCCCA 60.768 66.667 0.00 0.00 0.00 4.37
5812 25477 3.496331 CCTCTCCCATCCTCTAGTTCTC 58.504 54.545 0.00 0.00 0.00 2.87
5813 25478 3.146066 CTCTCCCATCCTCTAGTTCTCG 58.854 54.545 0.00 0.00 0.00 4.04
5814 25479 2.778270 TCTCCCATCCTCTAGTTCTCGA 59.222 50.000 0.00 0.00 0.00 4.04
5815 25480 3.146066 CTCCCATCCTCTAGTTCTCGAG 58.854 54.545 5.93 5.93 0.00 4.04
5816 25481 2.510382 TCCCATCCTCTAGTTCTCGAGT 59.490 50.000 13.13 0.00 0.00 4.18
5817 25482 3.715315 TCCCATCCTCTAGTTCTCGAGTA 59.285 47.826 13.13 0.00 0.00 2.59
5818 25483 4.069304 CCCATCCTCTAGTTCTCGAGTAG 58.931 52.174 13.13 7.26 33.33 2.57
5819 25484 4.445162 CCCATCCTCTAGTTCTCGAGTAGT 60.445 50.000 13.13 8.56 33.70 2.73
5820 25485 4.753107 CCATCCTCTAGTTCTCGAGTAGTC 59.247 50.000 13.13 1.88 33.70 2.59
5836 25501 6.214205 GAGTAGTCGAGTTATAGTCTTCGG 57.786 45.833 0.00 0.00 0.00 4.30
5837 25502 5.055812 AGTAGTCGAGTTATAGTCTTCGGG 58.944 45.833 0.00 0.00 0.00 5.14
5838 25503 3.883669 AGTCGAGTTATAGTCTTCGGGT 58.116 45.455 0.00 0.00 0.00 5.28
5839 25504 3.626670 AGTCGAGTTATAGTCTTCGGGTG 59.373 47.826 0.00 0.00 0.00 4.61
5840 25505 3.624861 GTCGAGTTATAGTCTTCGGGTGA 59.375 47.826 0.00 0.00 0.00 4.02
5841 25506 4.095483 GTCGAGTTATAGTCTTCGGGTGAA 59.905 45.833 0.00 0.00 0.00 3.18
5842 25507 4.701651 TCGAGTTATAGTCTTCGGGTGAAA 59.298 41.667 0.00 0.00 32.66 2.69
5843 25508 5.359009 TCGAGTTATAGTCTTCGGGTGAAAT 59.641 40.000 0.00 0.00 32.66 2.17
5844 25509 5.686397 CGAGTTATAGTCTTCGGGTGAAATC 59.314 44.000 0.00 0.00 32.66 2.17
5845 25510 5.589192 AGTTATAGTCTTCGGGTGAAATCG 58.411 41.667 0.00 0.00 32.66 3.34
5846 25511 5.126707 AGTTATAGTCTTCGGGTGAAATCGT 59.873 40.000 0.00 0.00 32.66 3.73
5847 25512 6.319658 AGTTATAGTCTTCGGGTGAAATCGTA 59.680 38.462 0.00 0.00 32.66 3.43
5848 25513 3.505464 AGTCTTCGGGTGAAATCGTAG 57.495 47.619 0.00 0.00 32.66 3.51
5849 25514 2.824341 AGTCTTCGGGTGAAATCGTAGT 59.176 45.455 0.00 0.00 32.66 2.73
5850 25515 3.257624 AGTCTTCGGGTGAAATCGTAGTT 59.742 43.478 0.00 0.00 32.66 2.24
5851 25516 3.611549 GTCTTCGGGTGAAATCGTAGTTC 59.388 47.826 0.00 0.00 32.66 3.01
5852 25517 3.508793 TCTTCGGGTGAAATCGTAGTTCT 59.491 43.478 0.00 0.00 32.66 3.01
5853 25518 3.226346 TCGGGTGAAATCGTAGTTCTG 57.774 47.619 0.00 0.00 0.00 3.02
5854 25519 1.659098 CGGGTGAAATCGTAGTTCTGC 59.341 52.381 0.00 0.00 0.00 4.26
5855 25520 2.007608 GGGTGAAATCGTAGTTCTGCC 58.992 52.381 0.00 0.00 0.00 4.85
5856 25521 2.354805 GGGTGAAATCGTAGTTCTGCCT 60.355 50.000 0.00 0.00 0.00 4.75
5857 25522 3.335579 GGTGAAATCGTAGTTCTGCCTT 58.664 45.455 0.00 0.00 0.00 4.35
5858 25523 3.125316 GGTGAAATCGTAGTTCTGCCTTG 59.875 47.826 0.00 0.00 0.00 3.61
5859 25524 3.746492 GTGAAATCGTAGTTCTGCCTTGT 59.254 43.478 0.00 0.00 0.00 3.16
5860 25525 3.994392 TGAAATCGTAGTTCTGCCTTGTC 59.006 43.478 0.00 0.00 0.00 3.18
5861 25526 2.279582 ATCGTAGTTCTGCCTTGTCG 57.720 50.000 0.00 0.00 0.00 4.35
5862 25527 1.241165 TCGTAGTTCTGCCTTGTCGA 58.759 50.000 0.00 0.00 0.00 4.20
5863 25528 1.610038 TCGTAGTTCTGCCTTGTCGAA 59.390 47.619 0.00 0.00 0.00 3.71
5864 25529 2.230508 TCGTAGTTCTGCCTTGTCGAAT 59.769 45.455 0.00 0.00 0.00 3.34
5865 25530 2.993899 CGTAGTTCTGCCTTGTCGAATT 59.006 45.455 0.00 0.00 0.00 2.17
5866 25531 3.181530 CGTAGTTCTGCCTTGTCGAATTG 60.182 47.826 0.00 0.00 0.00 2.32
5867 25532 2.154462 AGTTCTGCCTTGTCGAATTGG 58.846 47.619 0.00 0.00 0.00 3.16
5868 25533 0.881118 TTCTGCCTTGTCGAATTGGC 59.119 50.000 14.51 14.51 45.10 4.52
5871 25536 2.257353 GCCTTGTCGAATTGGCAGT 58.743 52.632 15.94 0.00 44.34 4.40
5872 25537 0.109597 GCCTTGTCGAATTGGCAGTG 60.110 55.000 15.94 0.00 44.34 3.66
5873 25538 0.523072 CCTTGTCGAATTGGCAGTGG 59.477 55.000 0.00 0.00 0.00 4.00
5874 25539 0.109597 CTTGTCGAATTGGCAGTGGC 60.110 55.000 10.30 10.30 40.13 5.01
5875 25540 0.537143 TTGTCGAATTGGCAGTGGCT 60.537 50.000 18.53 0.00 40.87 4.75
5876 25541 0.323302 TGTCGAATTGGCAGTGGCTA 59.677 50.000 18.53 11.06 40.87 3.93
5877 25542 0.727398 GTCGAATTGGCAGTGGCTAC 59.273 55.000 18.53 0.00 40.87 3.58
5878 25543 0.323302 TCGAATTGGCAGTGGCTACA 59.677 50.000 18.53 2.22 40.87 2.74
5889 25554 2.489938 GTGGCTACACCTTGATGGAA 57.510 50.000 0.00 0.00 41.84 3.53
5890 25555 2.359900 GTGGCTACACCTTGATGGAAG 58.640 52.381 0.00 0.00 41.84 3.46
5891 25556 1.340017 TGGCTACACCTTGATGGAAGC 60.340 52.381 0.00 0.00 40.22 3.86
5892 25557 1.340017 GGCTACACCTTGATGGAAGCA 60.340 52.381 11.04 0.00 39.53 3.91
5893 25558 2.648059 GCTACACCTTGATGGAAGCAT 58.352 47.619 0.00 0.00 38.51 3.79
5894 25559 2.615912 GCTACACCTTGATGGAAGCATC 59.384 50.000 0.00 0.00 38.51 3.91
5895 25560 2.885135 ACACCTTGATGGAAGCATCA 57.115 45.000 0.00 0.00 39.56 3.07
5896 25561 3.377253 ACACCTTGATGGAAGCATCAT 57.623 42.857 0.00 0.00 40.76 2.45
5897 25562 3.705051 ACACCTTGATGGAAGCATCATT 58.295 40.909 0.00 0.00 40.76 2.57
5898 25563 4.091549 ACACCTTGATGGAAGCATCATTT 58.908 39.130 0.00 0.00 40.76 2.32
5899 25564 4.529377 ACACCTTGATGGAAGCATCATTTT 59.471 37.500 0.00 0.00 40.76 1.82
5900 25565 4.868171 CACCTTGATGGAAGCATCATTTTG 59.132 41.667 0.00 0.00 40.76 2.44
5901 25566 4.081309 ACCTTGATGGAAGCATCATTTTGG 60.081 41.667 0.00 0.00 40.76 3.28
5902 25567 4.160814 CCTTGATGGAAGCATCATTTTGGA 59.839 41.667 0.00 0.00 40.76 3.53
5903 25568 4.994907 TGATGGAAGCATCATTTTGGAG 57.005 40.909 0.00 0.00 36.74 3.86
5904 25569 4.602107 TGATGGAAGCATCATTTTGGAGA 58.398 39.130 0.00 0.00 36.74 3.71
5905 25570 5.205821 TGATGGAAGCATCATTTTGGAGAT 58.794 37.500 0.00 0.00 36.74 2.75
5906 25571 5.659525 TGATGGAAGCATCATTTTGGAGATT 59.340 36.000 0.00 0.00 36.74 2.40
5907 25572 6.834969 TGATGGAAGCATCATTTTGGAGATTA 59.165 34.615 0.00 0.00 36.74 1.75
5908 25573 6.704289 TGGAAGCATCATTTTGGAGATTAG 57.296 37.500 0.00 0.00 0.00 1.73
5909 25574 6.425735 TGGAAGCATCATTTTGGAGATTAGA 58.574 36.000 0.00 0.00 0.00 2.10
5910 25575 6.319658 TGGAAGCATCATTTTGGAGATTAGAC 59.680 38.462 0.00 0.00 0.00 2.59
5911 25576 6.238869 GGAAGCATCATTTTGGAGATTAGACC 60.239 42.308 0.00 0.00 0.00 3.85
5912 25577 6.011122 AGCATCATTTTGGAGATTAGACCT 57.989 37.500 0.00 0.00 0.00 3.85
5913 25578 6.060788 AGCATCATTTTGGAGATTAGACCTC 58.939 40.000 0.00 0.00 0.00 3.85
5914 25579 6.060788 GCATCATTTTGGAGATTAGACCTCT 58.939 40.000 0.00 0.00 0.00 3.69
5915 25580 6.545298 GCATCATTTTGGAGATTAGACCTCTT 59.455 38.462 0.00 0.00 0.00 2.85
5916 25581 7.468357 GCATCATTTTGGAGATTAGACCTCTTG 60.468 40.741 0.00 0.00 0.00 3.02
5917 25582 6.418101 TCATTTTGGAGATTAGACCTCTTGG 58.582 40.000 0.00 0.00 39.83 3.61
5918 25583 6.215431 TCATTTTGGAGATTAGACCTCTTGGA 59.785 38.462 0.00 0.00 37.04 3.53
5919 25584 6.448369 TTTTGGAGATTAGACCTCTTGGAA 57.552 37.500 0.00 0.00 37.04 3.53
5920 25585 5.683876 TTGGAGATTAGACCTCTTGGAAG 57.316 43.478 0.00 0.00 37.04 3.46
5921 25586 4.033709 TGGAGATTAGACCTCTTGGAAGG 58.966 47.826 0.00 0.00 42.55 3.46
5922 25587 4.264850 TGGAGATTAGACCTCTTGGAAGGA 60.265 45.833 0.00 0.00 38.87 3.36
5923 25588 4.717280 GGAGATTAGACCTCTTGGAAGGAA 59.283 45.833 0.00 0.00 38.87 3.36
5924 25589 5.395879 GGAGATTAGACCTCTTGGAAGGAAC 60.396 48.000 0.00 0.00 38.87 3.62
5925 25590 5.094387 AGATTAGACCTCTTGGAAGGAACA 58.906 41.667 0.00 0.00 38.87 3.18
5926 25591 4.618920 TTAGACCTCTTGGAAGGAACAC 57.381 45.455 0.00 0.00 38.87 3.32
5927 25592 1.700186 AGACCTCTTGGAAGGAACACC 59.300 52.381 0.00 0.00 38.87 4.16
5928 25593 1.700186 GACCTCTTGGAAGGAACACCT 59.300 52.381 0.00 0.00 38.87 4.00
5929 25594 1.421646 ACCTCTTGGAAGGAACACCTG 59.578 52.381 0.00 0.00 38.87 4.00
5930 25595 1.271597 CCTCTTGGAAGGAACACCTGG 60.272 57.143 0.00 0.00 38.87 4.45
5931 25596 0.771127 TCTTGGAAGGAACACCTGGG 59.229 55.000 0.00 0.00 33.88 4.45
5932 25597 0.478507 CTTGGAAGGAACACCTGGGT 59.521 55.000 0.00 0.00 33.88 4.51
5933 25598 0.930726 TTGGAAGGAACACCTGGGTT 59.069 50.000 0.00 0.00 33.88 4.11
5934 25599 0.184933 TGGAAGGAACACCTGGGTTG 59.815 55.000 0.00 0.00 33.88 3.77
5935 25600 1.179174 GGAAGGAACACCTGGGTTGC 61.179 60.000 10.18 10.18 39.14 4.17
5936 25601 1.515521 GAAGGAACACCTGGGTTGCG 61.516 60.000 11.67 0.00 43.01 4.85
5937 25602 2.976494 AAGGAACACCTGGGTTGCGG 62.976 60.000 11.67 0.00 43.01 5.69
5938 25603 2.203294 GAACACCTGGGTTGCGGT 60.203 61.111 0.00 0.00 0.00 5.68
5939 25604 2.203294 AACACCTGGGTTGCGGTC 60.203 61.111 0.00 0.00 0.00 4.79
5940 25605 2.951475 GAACACCTGGGTTGCGGTCA 62.951 60.000 0.00 0.00 0.00 4.02
5941 25606 2.203280 CACCTGGGTTGCGGTCAA 60.203 61.111 0.00 0.00 0.00 3.18
5942 25607 2.113139 ACCTGGGTTGCGGTCAAG 59.887 61.111 0.00 0.00 31.93 3.02
5943 25608 2.113139 CCTGGGTTGCGGTCAAGT 59.887 61.111 0.00 0.00 31.93 3.16
5944 25609 2.260869 CCTGGGTTGCGGTCAAGTG 61.261 63.158 0.00 0.00 31.93 3.16
5945 25610 2.203280 TGGGTTGCGGTCAAGTGG 60.203 61.111 0.00 0.00 31.93 4.00
5946 25611 2.203294 GGGTTGCGGTCAAGTGGT 60.203 61.111 0.00 0.00 31.93 4.16
5947 25612 1.826487 GGGTTGCGGTCAAGTGGTT 60.826 57.895 0.00 0.00 31.93 3.67
5948 25613 1.358759 GGTTGCGGTCAAGTGGTTG 59.641 57.895 0.00 0.00 31.93 3.77
5949 25614 1.358759 GTTGCGGTCAAGTGGTTGG 59.641 57.895 0.00 0.00 34.09 3.77
5950 25615 1.077357 TTGCGGTCAAGTGGTTGGT 60.077 52.632 0.00 0.00 34.09 3.67
5951 25616 1.098712 TTGCGGTCAAGTGGTTGGTC 61.099 55.000 0.00 0.00 34.09 4.02
5952 25617 2.604174 GCGGTCAAGTGGTTGGTCG 61.604 63.158 0.00 0.00 34.09 4.79
5953 25618 1.068417 CGGTCAAGTGGTTGGTCGA 59.932 57.895 0.00 0.00 33.99 4.20
5954 25619 0.944311 CGGTCAAGTGGTTGGTCGAG 60.944 60.000 0.00 0.00 33.99 4.04
5955 25620 0.391597 GGTCAAGTGGTTGGTCGAGA 59.608 55.000 0.00 0.00 34.09 4.04
5956 25621 1.605712 GGTCAAGTGGTTGGTCGAGAG 60.606 57.143 0.00 0.00 34.09 3.20
5957 25622 0.033504 TCAAGTGGTTGGTCGAGAGC 59.966 55.000 0.00 0.00 34.09 4.09
5958 25623 0.034059 CAAGTGGTTGGTCGAGAGCT 59.966 55.000 3.90 0.00 0.00 4.09
5959 25624 1.272490 CAAGTGGTTGGTCGAGAGCTA 59.728 52.381 3.90 0.00 0.00 3.32
5960 25625 1.178276 AGTGGTTGGTCGAGAGCTAG 58.822 55.000 3.90 0.00 0.00 3.42
5961 25626 0.889306 GTGGTTGGTCGAGAGCTAGT 59.111 55.000 3.90 0.00 0.00 2.57
5962 25627 0.888619 TGGTTGGTCGAGAGCTAGTG 59.111 55.000 3.90 0.00 0.00 2.74
5963 25628 1.174783 GGTTGGTCGAGAGCTAGTGA 58.825 55.000 3.90 0.00 0.00 3.41
5964 25629 1.751924 GGTTGGTCGAGAGCTAGTGAT 59.248 52.381 3.90 0.00 0.00 3.06
5965 25630 2.480416 GGTTGGTCGAGAGCTAGTGATG 60.480 54.545 3.90 0.00 0.00 3.07
5966 25631 1.393603 TGGTCGAGAGCTAGTGATGG 58.606 55.000 3.90 0.00 0.00 3.51
5967 25632 1.341089 TGGTCGAGAGCTAGTGATGGT 60.341 52.381 3.90 0.00 0.00 3.55
5968 25633 2.092592 TGGTCGAGAGCTAGTGATGGTA 60.093 50.000 3.90 0.00 0.00 3.25
5969 25634 2.950309 GGTCGAGAGCTAGTGATGGTAA 59.050 50.000 0.00 0.00 0.00 2.85
5970 25635 3.003897 GGTCGAGAGCTAGTGATGGTAAG 59.996 52.174 0.00 0.00 0.00 2.34
5971 25636 3.878103 GTCGAGAGCTAGTGATGGTAAGA 59.122 47.826 0.00 0.00 0.00 2.10
5972 25637 4.517453 GTCGAGAGCTAGTGATGGTAAGAT 59.483 45.833 0.00 0.00 0.00 2.40
5973 25638 4.517075 TCGAGAGCTAGTGATGGTAAGATG 59.483 45.833 0.00 0.00 0.00 2.90
5974 25639 4.517075 CGAGAGCTAGTGATGGTAAGATGA 59.483 45.833 0.00 0.00 0.00 2.92
5975 25640 5.334802 CGAGAGCTAGTGATGGTAAGATGAG 60.335 48.000 0.00 0.00 0.00 2.90
5976 25641 4.832266 AGAGCTAGTGATGGTAAGATGAGG 59.168 45.833 0.00 0.00 0.00 3.86
5977 25642 3.900601 AGCTAGTGATGGTAAGATGAGGG 59.099 47.826 0.00 0.00 0.00 4.30
5978 25643 3.643792 GCTAGTGATGGTAAGATGAGGGT 59.356 47.826 0.00 0.00 0.00 4.34
5979 25644 4.502259 GCTAGTGATGGTAAGATGAGGGTG 60.502 50.000 0.00 0.00 0.00 4.61
5980 25645 3.724478 AGTGATGGTAAGATGAGGGTGA 58.276 45.455 0.00 0.00 0.00 4.02
5981 25646 4.302067 AGTGATGGTAAGATGAGGGTGAT 58.698 43.478 0.00 0.00 0.00 3.06
5982 25647 4.102210 AGTGATGGTAAGATGAGGGTGATG 59.898 45.833 0.00 0.00 0.00 3.07
5983 25648 4.040047 TGATGGTAAGATGAGGGTGATGT 58.960 43.478 0.00 0.00 0.00 3.06
5984 25649 4.101585 TGATGGTAAGATGAGGGTGATGTC 59.898 45.833 0.00 0.00 0.00 3.06
5985 25650 3.724478 TGGTAAGATGAGGGTGATGTCT 58.276 45.455 0.00 0.00 0.00 3.41
5986 25651 4.878968 TGGTAAGATGAGGGTGATGTCTA 58.121 43.478 0.00 0.00 0.00 2.59
5987 25652 4.649674 TGGTAAGATGAGGGTGATGTCTAC 59.350 45.833 0.00 0.00 0.00 2.59
5988 25653 4.261656 GGTAAGATGAGGGTGATGTCTACG 60.262 50.000 0.00 0.00 0.00 3.51
5989 25654 2.311463 AGATGAGGGTGATGTCTACGG 58.689 52.381 0.00 0.00 0.00 4.02
5990 25655 2.032620 GATGAGGGTGATGTCTACGGT 58.967 52.381 0.00 0.00 0.00 4.83
5991 25656 1.182667 TGAGGGTGATGTCTACGGTG 58.817 55.000 0.00 0.00 0.00 4.94
5992 25657 0.460311 GAGGGTGATGTCTACGGTGG 59.540 60.000 0.00 0.00 0.00 4.61
5993 25658 1.153429 GGGTGATGTCTACGGTGGC 60.153 63.158 0.00 0.00 0.00 5.01
5994 25659 1.518572 GGTGATGTCTACGGTGGCG 60.519 63.158 0.00 0.00 0.00 5.69
5995 25660 1.509463 GTGATGTCTACGGTGGCGA 59.491 57.895 0.00 0.00 0.00 5.54
5996 25661 0.525668 GTGATGTCTACGGTGGCGAG 60.526 60.000 0.00 0.00 0.00 5.03
5997 25662 1.589196 GATGTCTACGGTGGCGAGC 60.589 63.158 0.00 0.00 0.00 5.03
5998 25663 2.955751 GATGTCTACGGTGGCGAGCC 62.956 65.000 7.26 7.26 0.00 4.70
5999 25664 4.509737 GTCTACGGTGGCGAGCCC 62.510 72.222 12.05 2.94 34.56 5.19
6000 25665 4.753662 TCTACGGTGGCGAGCCCT 62.754 66.667 12.05 0.00 34.56 5.19
6001 25666 3.771160 CTACGGTGGCGAGCCCTT 61.771 66.667 12.05 0.00 34.56 3.95
6002 25667 3.310860 CTACGGTGGCGAGCCCTTT 62.311 63.158 12.05 0.00 34.56 3.11
6003 25668 2.798148 CTACGGTGGCGAGCCCTTTT 62.798 60.000 12.05 0.00 34.56 2.27
6004 25669 3.737172 CGGTGGCGAGCCCTTTTG 61.737 66.667 12.05 0.00 34.56 2.44
6005 25670 3.373565 GGTGGCGAGCCCTTTTGG 61.374 66.667 12.05 0.00 39.97 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.887836 GACCGAACAAAGGGTGTCCC 60.888 60.000 0.00 0.00 45.90 4.46
60 62 4.690184 TCGTCTTCTCGTATTAACTGCA 57.310 40.909 0.00 0.00 0.00 4.41
164 174 5.146693 TTCCCAGCTCGGAAATGGTAACA 62.147 47.826 10.72 0.00 44.25 2.41
165 175 1.065709 TCCCAGCTCGGAAATGGTAAC 60.066 52.381 0.00 0.00 36.56 2.50
166 176 1.281419 TCCCAGCTCGGAAATGGTAA 58.719 50.000 0.00 0.00 36.56 2.85
174 184 0.541863 GAGGAATTTCCCAGCTCGGA 59.458 55.000 11.92 0.00 37.19 4.55
421 434 6.314917 AGGTACATTGGAACTTTCAAAGGAT 58.685 36.000 1.31 0.00 0.00 3.24
476 490 7.012515 TCACAAGAAACGAGCAAATAAAGGTAA 59.987 33.333 0.00 0.00 0.00 2.85
503 519 4.041740 TGAGGAGAATCGTTTGGATACG 57.958 45.455 0.00 0.00 42.68 3.06
609 627 4.142004 ACGAAGGAACTCATATGTACCCAC 60.142 45.833 1.90 0.00 38.49 4.61
654 674 0.464036 ACACAGAGGCGAACACAAGA 59.536 50.000 0.00 0.00 0.00 3.02
690 3795 3.495670 TTGAACCAAACACGTTCCAAG 57.504 42.857 0.00 0.00 39.10 3.61
843 4557 6.229936 TGTCCAGTAAAGCGGTCTATTTAT 57.770 37.500 0.00 0.00 0.00 1.40
861 4577 1.118965 TTCGCTCTCACCCTTGTCCA 61.119 55.000 0.00 0.00 0.00 4.02
884 4937 0.321996 GGGTTTTCTCGAGCAGTCCT 59.678 55.000 7.81 0.00 0.00 3.85
1066 5125 2.187958 CACCACCTGTCTATGAAGGGA 58.812 52.381 0.00 0.00 37.94 4.20
1166 10681 4.998400 TTGCCGCCGCTACTTGCA 62.998 61.111 0.00 0.00 43.06 4.08
1259 10783 3.751621 CACTCGGAATTTGAAGCACATC 58.248 45.455 0.00 0.00 0.00 3.06
1262 10786 1.537202 AGCACTCGGAATTTGAAGCAC 59.463 47.619 0.00 0.00 0.00 4.40
1278 10802 4.349501 GCATTAAGCAGAAATCTCAGCAC 58.650 43.478 0.00 0.00 44.79 4.40
1364 10897 1.320555 CGCTGTACAATAGACGTGTGC 59.679 52.381 0.00 0.00 32.80 4.57
1473 14413 3.381949 GTGAAGAGTAAAGTGACAGCGT 58.618 45.455 0.00 0.00 0.00 5.07
1492 14439 4.477302 AAAGGAAACGACGTAAATGGTG 57.523 40.909 0.00 0.00 0.00 4.17
1596 14618 4.000988 GCTTTGACCCTCTACGAATTTGA 58.999 43.478 0.00 0.00 0.00 2.69
1614 16874 1.141053 AGTCAACTGGGAACTCGCTTT 59.859 47.619 0.00 0.00 0.00 3.51
1690 16995 2.525381 CGGAGGGAGATGAGGGGG 60.525 72.222 0.00 0.00 0.00 5.40
1773 17385 2.177594 CTCCACTCCAGTCCAGTGCC 62.178 65.000 0.00 0.00 40.10 5.01
1802 17414 2.131294 CTACCGAATCGAGCCCGGAG 62.131 65.000 23.66 14.72 45.58 4.63
1805 17417 2.012902 AACCTACCGAATCGAGCCCG 62.013 60.000 3.36 0.00 37.07 6.13
1886 17501 1.202486 AGAAACTGAACGCGTTGGAGA 60.202 47.619 31.89 9.27 0.00 3.71
1934 17554 3.702048 CGCCGGAACCTCCTGGAA 61.702 66.667 5.05 0.00 33.84 3.53
1961 17582 2.434884 ATGGTTCCTCAGTGCGCG 60.435 61.111 0.00 0.00 0.00 6.86
1963 17584 1.364626 GAGCATGGTTCCTCAGTGCG 61.365 60.000 0.00 0.00 40.54 5.34
2047 17670 1.888512 ACATTGCCGCTTTCAGACATT 59.111 42.857 0.00 0.00 0.00 2.71
2048 17671 1.538047 ACATTGCCGCTTTCAGACAT 58.462 45.000 0.00 0.00 0.00 3.06
2049 17672 1.266718 GAACATTGCCGCTTTCAGACA 59.733 47.619 0.00 0.00 0.00 3.41
2121 17750 3.163630 TGCTGAAGTGGAAAAGCAAAC 57.836 42.857 0.00 0.00 42.42 2.93
2167 17797 3.195610 TCGTGAAGTCTACAATGGCATCT 59.804 43.478 0.00 0.00 0.00 2.90
2177 17807 3.372954 AGCGCATAATCGTGAAGTCTAC 58.627 45.455 11.47 0.00 0.00 2.59
2187 17817 6.250315 TGAACAAAACATAAAGCGCATAATCG 59.750 34.615 11.47 0.00 0.00 3.34
2285 18290 9.363763 GTTACTCCTACCTAGTCAAAATTGTAC 57.636 37.037 0.00 0.00 0.00 2.90
2286 18291 9.092338 TGTTACTCCTACCTAGTCAAAATTGTA 57.908 33.333 0.00 0.00 0.00 2.41
2287 18292 7.970102 TGTTACTCCTACCTAGTCAAAATTGT 58.030 34.615 0.00 0.00 0.00 2.71
2315 18321 7.660617 ACAGCAATGTATTCTATCCTCATTCAG 59.339 37.037 0.00 0.00 0.00 3.02
2343 18351 3.050619 CTGACAGACACTCGTTACAACC 58.949 50.000 0.00 0.00 0.00 3.77
2458 18470 2.079158 TCAGGCATCGAGAAAAAGCAG 58.921 47.619 0.00 0.00 0.00 4.24
2493 18539 6.039616 GGTCTTGTGTTCAAACTAATTTGCA 58.960 36.000 0.00 0.00 44.22 4.08
2497 18543 7.264947 CCTTTGGTCTTGTGTTCAAACTAATT 58.735 34.615 0.00 0.00 32.87 1.40
2502 18548 3.119137 AGCCTTTGGTCTTGTGTTCAAAC 60.119 43.478 0.00 0.00 32.87 2.93
2524 18571 7.291416 TCCAGGTACTATATTTATGGAACTGCA 59.709 37.037 0.00 0.00 36.02 4.41
2536 18589 7.266905 ACAACTTGGTTCCAGGTACTATATT 57.733 36.000 7.02 0.00 36.02 1.28
2546 18599 4.853924 ATTGCTAACAACTTGGTTCCAG 57.146 40.909 0.00 0.00 38.99 3.86
2547 18600 7.172342 ACTATATTGCTAACAACTTGGTTCCA 58.828 34.615 0.00 0.00 38.99 3.53
2548 18601 7.625828 ACTATATTGCTAACAACTTGGTTCC 57.374 36.000 0.00 0.00 38.99 3.62
2549 18602 9.379791 ACTACTATATTGCTAACAACTTGGTTC 57.620 33.333 0.00 0.00 38.99 3.62
2550 18603 9.162764 CACTACTATATTGCTAACAACTTGGTT 57.837 33.333 0.00 0.00 38.99 3.67
2551 18604 8.537016 TCACTACTATATTGCTAACAACTTGGT 58.463 33.333 0.00 0.00 38.99 3.67
2552 18605 8.942338 TCACTACTATATTGCTAACAACTTGG 57.058 34.615 0.00 0.00 38.99 3.61
2593 18751 1.999648 TGCAGGCTGTCCTTTTTCAT 58.000 45.000 17.16 0.00 41.93 2.57
2625 18783 3.431766 GCACAGACCTACGGAATGGTATT 60.432 47.826 0.00 0.00 36.59 1.89
2654 18812 3.261897 ACATCCTGGATCACTCGAAACTT 59.738 43.478 6.13 0.00 0.00 2.66
2665 18823 4.694339 AGTAAAGCGTAACATCCTGGATC 58.306 43.478 6.13 0.00 0.00 3.36
2667 18825 5.361571 TGATAGTAAAGCGTAACATCCTGGA 59.638 40.000 0.00 0.00 0.00 3.86
2668 18826 5.597806 TGATAGTAAAGCGTAACATCCTGG 58.402 41.667 0.00 0.00 0.00 4.45
2951 19121 9.997482 TGTGTATTTAGTTTGTCTCAAACTTTC 57.003 29.630 25.50 15.04 40.58 2.62
3184 19366 2.027377 ACCTTCTGTTCATGCTCCTCAG 60.027 50.000 0.00 0.00 0.00 3.35
3388 19575 8.581057 ACTGCTACAATATCAGACGAAAATAG 57.419 34.615 0.00 0.00 0.00 1.73
3558 19758 8.966069 ATAGAATTCTGCCCTTAACTTAGTTC 57.034 34.615 18.47 0.00 0.00 3.01
3628 19970 1.280746 CGCAGAGGTTGTGTGCTTG 59.719 57.895 0.00 0.00 43.43 4.01
4157 22125 5.539955 GTCACATGGCCCCATATTAAGAAAT 59.460 40.000 0.00 0.00 34.91 2.17
4457 22455 4.096681 ACCACCTCAGTAATGAGATGTCA 58.903 43.478 21.31 0.00 38.13 3.58
4485 22483 2.104451 AGGCAAACATGCAAATTGACCA 59.896 40.909 10.65 0.00 32.34 4.02
4938 22953 0.958382 TGCCGGAACACCTGCATTAC 60.958 55.000 5.05 0.00 38.58 1.89
5015 24393 1.597461 GACCCACCAGCCTACTGTC 59.403 63.158 0.00 0.00 42.81 3.51
5059 24440 0.878416 GCATGCTTCGGGTTGTTGTA 59.122 50.000 11.37 0.00 0.00 2.41
5060 24441 1.106351 TGCATGCTTCGGGTTGTTGT 61.106 50.000 20.33 0.00 0.00 3.32
5087 24470 4.398044 TCTGCTGGACGGATTTTTATTTCC 59.602 41.667 0.00 0.00 0.00 3.13
5452 25060 2.443416 GCCCGACATAAAAGGAAGGTT 58.557 47.619 0.00 0.00 0.00 3.50
5465 25073 2.759973 CCTAGAGCTGGCCCGACA 60.760 66.667 0.00 0.00 0.00 4.35
5538 25146 5.112686 CACCTCACTAAAGCTTCCTCATAC 58.887 45.833 0.00 0.00 0.00 2.39
5543 25151 1.003696 GCCACCTCACTAAAGCTTCCT 59.996 52.381 0.00 0.00 0.00 3.36
5553 25161 1.687612 CATCCCAAGCCACCTCACT 59.312 57.895 0.00 0.00 0.00 3.41
5564 25172 1.741401 CTTGAGCGTCGCATCCCAA 60.741 57.895 21.09 15.29 0.00 4.12
5567 25175 2.125512 ACCTTGAGCGTCGCATCC 60.126 61.111 21.09 8.60 0.00 3.51
5569 25177 1.738099 GTGACCTTGAGCGTCGCAT 60.738 57.895 21.09 4.29 39.89 4.73
5580 25188 0.393077 CACCTCCACTTCGTGACCTT 59.607 55.000 0.00 0.00 35.23 3.50
5609 25217 1.701847 AGAGCTGAACCAGGACACAAT 59.298 47.619 0.00 0.00 31.21 2.71
5613 25221 1.536073 CCGAGAGCTGAACCAGGACA 61.536 60.000 0.00 0.00 31.21 4.02
5643 25251 2.441164 GCACAACCCACACCACCA 60.441 61.111 0.00 0.00 0.00 4.17
5648 25256 2.110213 TCGGAGCACAACCCACAC 59.890 61.111 0.00 0.00 0.00 3.82
5724 25389 4.778143 ACGGGCCTTGTCATCGCC 62.778 66.667 0.84 2.66 42.23 5.54
5726 25391 2.819595 CCACGGGCCTTGTCATCG 60.820 66.667 9.38 0.00 0.00 3.84
5777 25442 1.458588 AGAGGGGCCGAATCTCCTC 60.459 63.158 13.94 13.94 44.46 3.71
5788 25453 0.544120 CTAGAGGATGGGAGAGGGGC 60.544 65.000 0.00 0.00 0.00 5.80
5799 25464 4.341806 TCGACTACTCGAGAACTAGAGGAT 59.658 45.833 21.68 0.00 44.14 3.24
5812 25477 5.107913 CCGAAGACTATAACTCGACTACTCG 60.108 48.000 0.00 0.00 41.65 4.18
5813 25478 5.177327 CCCGAAGACTATAACTCGACTACTC 59.823 48.000 0.00 0.00 0.00 2.59
5814 25479 5.055812 CCCGAAGACTATAACTCGACTACT 58.944 45.833 0.00 0.00 0.00 2.57
5815 25480 4.813697 ACCCGAAGACTATAACTCGACTAC 59.186 45.833 0.00 0.00 0.00 2.73
5816 25481 4.813161 CACCCGAAGACTATAACTCGACTA 59.187 45.833 0.00 0.00 0.00 2.59
5817 25482 3.626670 CACCCGAAGACTATAACTCGACT 59.373 47.826 0.00 0.00 0.00 4.18
5818 25483 3.624861 TCACCCGAAGACTATAACTCGAC 59.375 47.826 0.00 0.00 0.00 4.20
5819 25484 3.877559 TCACCCGAAGACTATAACTCGA 58.122 45.455 0.00 0.00 0.00 4.04
5820 25485 4.627611 TTCACCCGAAGACTATAACTCG 57.372 45.455 0.00 0.00 0.00 4.18
5821 25486 5.686397 CGATTTCACCCGAAGACTATAACTC 59.314 44.000 0.00 0.00 31.28 3.01
5822 25487 5.126707 ACGATTTCACCCGAAGACTATAACT 59.873 40.000 0.00 0.00 31.28 2.24
5823 25488 5.346522 ACGATTTCACCCGAAGACTATAAC 58.653 41.667 0.00 0.00 31.28 1.89
5824 25489 5.587388 ACGATTTCACCCGAAGACTATAA 57.413 39.130 0.00 0.00 31.28 0.98
5825 25490 5.824624 ACTACGATTTCACCCGAAGACTATA 59.175 40.000 0.00 0.00 31.28 1.31
5826 25491 4.643784 ACTACGATTTCACCCGAAGACTAT 59.356 41.667 0.00 0.00 31.28 2.12
5827 25492 4.012374 ACTACGATTTCACCCGAAGACTA 58.988 43.478 0.00 0.00 31.28 2.59
5828 25493 2.824341 ACTACGATTTCACCCGAAGACT 59.176 45.455 0.00 0.00 31.28 3.24
5829 25494 3.227810 ACTACGATTTCACCCGAAGAC 57.772 47.619 0.00 0.00 31.28 3.01
5830 25495 3.508793 AGAACTACGATTTCACCCGAAGA 59.491 43.478 0.00 0.00 31.28 2.87
5831 25496 3.612860 CAGAACTACGATTTCACCCGAAG 59.387 47.826 0.00 0.00 31.28 3.79
5832 25497 3.581755 CAGAACTACGATTTCACCCGAA 58.418 45.455 0.00 0.00 0.00 4.30
5833 25498 2.673043 GCAGAACTACGATTTCACCCGA 60.673 50.000 0.00 0.00 0.00 5.14
5834 25499 1.659098 GCAGAACTACGATTTCACCCG 59.341 52.381 0.00 0.00 0.00 5.28
5835 25500 2.007608 GGCAGAACTACGATTTCACCC 58.992 52.381 0.00 0.00 0.00 4.61
5836 25501 2.973945 AGGCAGAACTACGATTTCACC 58.026 47.619 0.00 0.00 0.00 4.02
5837 25502 3.746492 ACAAGGCAGAACTACGATTTCAC 59.254 43.478 0.00 0.00 0.00 3.18
5838 25503 3.994392 GACAAGGCAGAACTACGATTTCA 59.006 43.478 0.00 0.00 0.00 2.69
5839 25504 3.060895 CGACAAGGCAGAACTACGATTTC 59.939 47.826 0.00 0.00 0.00 2.17
5840 25505 2.993899 CGACAAGGCAGAACTACGATTT 59.006 45.455 0.00 0.00 0.00 2.17
5841 25506 2.230508 TCGACAAGGCAGAACTACGATT 59.769 45.455 0.00 0.00 0.00 3.34
5842 25507 1.816835 TCGACAAGGCAGAACTACGAT 59.183 47.619 0.00 0.00 0.00 3.73
5843 25508 1.241165 TCGACAAGGCAGAACTACGA 58.759 50.000 0.00 0.00 0.00 3.43
5844 25509 2.060326 TTCGACAAGGCAGAACTACG 57.940 50.000 0.00 0.00 0.00 3.51
5845 25510 3.125316 CCAATTCGACAAGGCAGAACTAC 59.875 47.826 0.00 0.00 0.00 2.73
5846 25511 3.334691 CCAATTCGACAAGGCAGAACTA 58.665 45.455 0.00 0.00 0.00 2.24
5847 25512 2.154462 CCAATTCGACAAGGCAGAACT 58.846 47.619 0.00 0.00 0.00 3.01
5848 25513 1.401539 GCCAATTCGACAAGGCAGAAC 60.402 52.381 14.40 0.00 46.26 3.01
5849 25514 0.881118 GCCAATTCGACAAGGCAGAA 59.119 50.000 14.40 0.00 46.26 3.02
5850 25515 2.555123 GCCAATTCGACAAGGCAGA 58.445 52.632 14.40 0.00 46.26 4.26
5854 25519 0.523072 CCACTGCCAATTCGACAAGG 59.477 55.000 0.00 0.00 0.00 3.61
5855 25520 0.109597 GCCACTGCCAATTCGACAAG 60.110 55.000 0.00 0.00 0.00 3.16
5856 25521 0.537143 AGCCACTGCCAATTCGACAA 60.537 50.000 0.00 0.00 38.69 3.18
5857 25522 0.323302 TAGCCACTGCCAATTCGACA 59.677 50.000 0.00 0.00 38.69 4.35
5858 25523 0.727398 GTAGCCACTGCCAATTCGAC 59.273 55.000 0.00 0.00 38.69 4.20
5859 25524 0.323302 TGTAGCCACTGCCAATTCGA 59.677 50.000 0.00 0.00 38.69 3.71
5860 25525 0.447801 GTGTAGCCACTGCCAATTCG 59.552 55.000 0.00 0.00 38.61 3.34
5861 25526 0.811281 GGTGTAGCCACTGCCAATTC 59.189 55.000 0.00 0.00 41.53 2.17
5862 25527 0.405585 AGGTGTAGCCACTGCCAATT 59.594 50.000 0.00 0.00 41.53 2.32
5863 25528 0.405585 AAGGTGTAGCCACTGCCAAT 59.594 50.000 0.00 0.00 41.53 3.16
5864 25529 0.537143 CAAGGTGTAGCCACTGCCAA 60.537 55.000 0.00 0.00 41.53 4.52
5865 25530 1.073025 CAAGGTGTAGCCACTGCCA 59.927 57.895 0.00 0.00 41.53 4.92
5866 25531 0.035056 ATCAAGGTGTAGCCACTGCC 60.035 55.000 0.00 0.00 41.53 4.85
5867 25532 1.089920 CATCAAGGTGTAGCCACTGC 58.910 55.000 0.00 0.00 41.53 4.40
5868 25533 1.278985 TCCATCAAGGTGTAGCCACTG 59.721 52.381 0.00 0.00 41.53 3.66
5869 25534 1.656587 TCCATCAAGGTGTAGCCACT 58.343 50.000 0.00 0.00 41.53 4.00
5870 25535 2.359900 CTTCCATCAAGGTGTAGCCAC 58.640 52.381 0.00 0.00 40.61 5.01
5871 25536 1.340017 GCTTCCATCAAGGTGTAGCCA 60.340 52.381 0.00 0.00 40.61 4.75
5872 25537 1.340017 TGCTTCCATCAAGGTGTAGCC 60.340 52.381 0.00 0.00 36.92 3.93
5873 25538 2.113860 TGCTTCCATCAAGGTGTAGC 57.886 50.000 0.00 0.00 39.02 3.58
5883 25548 5.786264 ATCTCCAAAATGATGCTTCCATC 57.214 39.130 0.00 0.00 46.46 3.51
5884 25549 7.014038 GTCTAATCTCCAAAATGATGCTTCCAT 59.986 37.037 0.00 0.00 0.00 3.41
5885 25550 6.319658 GTCTAATCTCCAAAATGATGCTTCCA 59.680 38.462 0.00 0.00 0.00 3.53
5886 25551 6.238869 GGTCTAATCTCCAAAATGATGCTTCC 60.239 42.308 0.00 0.00 0.00 3.46
5887 25552 6.545298 AGGTCTAATCTCCAAAATGATGCTTC 59.455 38.462 0.00 0.00 0.00 3.86
5888 25553 6.430007 AGGTCTAATCTCCAAAATGATGCTT 58.570 36.000 0.00 0.00 0.00 3.91
5889 25554 6.011122 AGGTCTAATCTCCAAAATGATGCT 57.989 37.500 0.00 0.00 0.00 3.79
5890 25555 6.060788 AGAGGTCTAATCTCCAAAATGATGC 58.939 40.000 0.00 0.00 31.96 3.91
5891 25556 7.013083 CCAAGAGGTCTAATCTCCAAAATGATG 59.987 40.741 0.00 0.00 31.96 3.07
5892 25557 7.059156 CCAAGAGGTCTAATCTCCAAAATGAT 58.941 38.462 0.00 0.00 31.96 2.45
5893 25558 6.215431 TCCAAGAGGTCTAATCTCCAAAATGA 59.785 38.462 0.00 0.00 35.89 2.57
5894 25559 6.418101 TCCAAGAGGTCTAATCTCCAAAATG 58.582 40.000 0.00 0.00 35.89 2.32
5895 25560 6.642733 TCCAAGAGGTCTAATCTCCAAAAT 57.357 37.500 0.00 0.00 35.89 1.82
5896 25561 6.448369 TTCCAAGAGGTCTAATCTCCAAAA 57.552 37.500 0.00 0.00 35.89 2.44
5897 25562 5.045578 CCTTCCAAGAGGTCTAATCTCCAAA 60.046 44.000 0.00 0.00 35.89 3.28
5898 25563 4.471386 CCTTCCAAGAGGTCTAATCTCCAA 59.529 45.833 0.00 0.00 35.89 3.53
5899 25564 4.033709 CCTTCCAAGAGGTCTAATCTCCA 58.966 47.826 0.00 0.00 35.89 3.86
5900 25565 4.290942 TCCTTCCAAGAGGTCTAATCTCC 58.709 47.826 0.00 0.00 38.04 3.71
5901 25566 5.187967 TGTTCCTTCCAAGAGGTCTAATCTC 59.812 44.000 0.00 0.00 38.04 2.75
5902 25567 5.046231 GTGTTCCTTCCAAGAGGTCTAATCT 60.046 44.000 0.00 0.00 38.04 2.40
5903 25568 5.179533 GTGTTCCTTCCAAGAGGTCTAATC 58.820 45.833 0.00 0.00 38.04 1.75
5904 25569 4.019231 GGTGTTCCTTCCAAGAGGTCTAAT 60.019 45.833 0.00 0.00 38.04 1.73
5905 25570 3.326880 GGTGTTCCTTCCAAGAGGTCTAA 59.673 47.826 0.00 0.00 38.04 2.10
5906 25571 2.904434 GGTGTTCCTTCCAAGAGGTCTA 59.096 50.000 0.00 0.00 38.04 2.59
5907 25572 1.700186 GGTGTTCCTTCCAAGAGGTCT 59.300 52.381 0.00 0.00 38.04 3.85
5908 25573 1.700186 AGGTGTTCCTTCCAAGAGGTC 59.300 52.381 0.00 0.00 42.12 3.85
5909 25574 1.421646 CAGGTGTTCCTTCCAAGAGGT 59.578 52.381 0.00 0.00 43.07 3.85
5910 25575 1.271597 CCAGGTGTTCCTTCCAAGAGG 60.272 57.143 0.00 0.00 43.07 3.69
5911 25576 1.271597 CCCAGGTGTTCCTTCCAAGAG 60.272 57.143 0.00 0.00 43.07 2.85
5912 25577 0.771127 CCCAGGTGTTCCTTCCAAGA 59.229 55.000 0.00 0.00 43.07 3.02
5913 25578 0.478507 ACCCAGGTGTTCCTTCCAAG 59.521 55.000 0.00 0.00 43.07 3.61
5914 25579 0.930726 AACCCAGGTGTTCCTTCCAA 59.069 50.000 0.00 0.00 43.07 3.53
5915 25580 0.184933 CAACCCAGGTGTTCCTTCCA 59.815 55.000 0.00 0.00 43.07 3.53
5916 25581 1.179174 GCAACCCAGGTGTTCCTTCC 61.179 60.000 0.00 0.00 43.07 3.46
5917 25582 1.515521 CGCAACCCAGGTGTTCCTTC 61.516 60.000 0.00 0.00 43.07 3.46
5918 25583 1.528309 CGCAACCCAGGTGTTCCTT 60.528 57.895 0.00 0.00 43.07 3.36
5919 25584 2.113139 CGCAACCCAGGTGTTCCT 59.887 61.111 0.00 0.00 46.37 3.36
5920 25585 2.983592 CCGCAACCCAGGTGTTCC 60.984 66.667 0.00 0.00 0.00 3.62
5921 25586 2.203294 ACCGCAACCCAGGTGTTC 60.203 61.111 0.00 0.00 39.66 3.18
5922 25587 2.203294 GACCGCAACCCAGGTGTT 60.203 61.111 0.00 0.00 41.51 3.32
5923 25588 2.958578 CTTGACCGCAACCCAGGTGT 62.959 60.000 0.00 0.00 41.51 4.16
5924 25589 2.203280 TTGACCGCAACCCAGGTG 60.203 61.111 0.00 0.00 41.51 4.00
5925 25590 2.113139 CTTGACCGCAACCCAGGT 59.887 61.111 0.00 0.00 44.64 4.00
5926 25591 2.113139 ACTTGACCGCAACCCAGG 59.887 61.111 0.00 0.00 0.00 4.45
5927 25592 2.260869 CCACTTGACCGCAACCCAG 61.261 63.158 0.00 0.00 0.00 4.45
5928 25593 2.203280 CCACTTGACCGCAACCCA 60.203 61.111 0.00 0.00 0.00 4.51
5929 25594 1.826487 AACCACTTGACCGCAACCC 60.826 57.895 0.00 0.00 0.00 4.11
5930 25595 1.358759 CAACCACTTGACCGCAACC 59.641 57.895 0.00 0.00 0.00 3.77
5931 25596 1.358759 CCAACCACTTGACCGCAAC 59.641 57.895 0.00 0.00 0.00 4.17
5932 25597 1.077357 ACCAACCACTTGACCGCAA 60.077 52.632 0.00 0.00 0.00 4.85
5933 25598 1.525077 GACCAACCACTTGACCGCA 60.525 57.895 0.00 0.00 0.00 5.69
5934 25599 2.604174 CGACCAACCACTTGACCGC 61.604 63.158 0.00 0.00 0.00 5.68
5935 25600 0.944311 CTCGACCAACCACTTGACCG 60.944 60.000 0.00 0.00 0.00 4.79
5936 25601 0.391597 TCTCGACCAACCACTTGACC 59.608 55.000 0.00 0.00 0.00 4.02
5937 25602 1.784525 CTCTCGACCAACCACTTGAC 58.215 55.000 0.00 0.00 0.00 3.18
5938 25603 0.033504 GCTCTCGACCAACCACTTGA 59.966 55.000 0.00 0.00 0.00 3.02
5939 25604 0.034059 AGCTCTCGACCAACCACTTG 59.966 55.000 0.00 0.00 0.00 3.16
5940 25605 1.546476 CTAGCTCTCGACCAACCACTT 59.454 52.381 0.00 0.00 0.00 3.16
5941 25606 1.178276 CTAGCTCTCGACCAACCACT 58.822 55.000 0.00 0.00 0.00 4.00
5942 25607 0.889306 ACTAGCTCTCGACCAACCAC 59.111 55.000 0.00 0.00 0.00 4.16
5943 25608 0.888619 CACTAGCTCTCGACCAACCA 59.111 55.000 0.00 0.00 0.00 3.67
5944 25609 1.174783 TCACTAGCTCTCGACCAACC 58.825 55.000 0.00 0.00 0.00 3.77
5945 25610 2.480416 CCATCACTAGCTCTCGACCAAC 60.480 54.545 0.00 0.00 0.00 3.77
5946 25611 1.751351 CCATCACTAGCTCTCGACCAA 59.249 52.381 0.00 0.00 0.00 3.67
5947 25612 1.341089 ACCATCACTAGCTCTCGACCA 60.341 52.381 0.00 0.00 0.00 4.02
5948 25613 1.394618 ACCATCACTAGCTCTCGACC 58.605 55.000 0.00 0.00 0.00 4.79
5949 25614 3.878103 TCTTACCATCACTAGCTCTCGAC 59.122 47.826 0.00 0.00 0.00 4.20
5950 25615 4.152284 TCTTACCATCACTAGCTCTCGA 57.848 45.455 0.00 0.00 0.00 4.04
5951 25616 4.517075 TCATCTTACCATCACTAGCTCTCG 59.483 45.833 0.00 0.00 0.00 4.04
5952 25617 5.048083 CCTCATCTTACCATCACTAGCTCTC 60.048 48.000 0.00 0.00 0.00 3.20
5953 25618 4.832266 CCTCATCTTACCATCACTAGCTCT 59.168 45.833 0.00 0.00 0.00 4.09
5954 25619 4.021544 CCCTCATCTTACCATCACTAGCTC 60.022 50.000 0.00 0.00 0.00 4.09
5955 25620 3.900601 CCCTCATCTTACCATCACTAGCT 59.099 47.826 0.00 0.00 0.00 3.32
5956 25621 3.643792 ACCCTCATCTTACCATCACTAGC 59.356 47.826 0.00 0.00 0.00 3.42
5957 25622 4.895889 TCACCCTCATCTTACCATCACTAG 59.104 45.833 0.00 0.00 0.00 2.57
5958 25623 4.878968 TCACCCTCATCTTACCATCACTA 58.121 43.478 0.00 0.00 0.00 2.74
5959 25624 3.724478 TCACCCTCATCTTACCATCACT 58.276 45.455 0.00 0.00 0.00 3.41
5960 25625 4.141620 ACATCACCCTCATCTTACCATCAC 60.142 45.833 0.00 0.00 0.00 3.06
5961 25626 4.040047 ACATCACCCTCATCTTACCATCA 58.960 43.478 0.00 0.00 0.00 3.07
5962 25627 4.346418 AGACATCACCCTCATCTTACCATC 59.654 45.833 0.00 0.00 0.00 3.51
5963 25628 4.302067 AGACATCACCCTCATCTTACCAT 58.698 43.478 0.00 0.00 0.00 3.55
5964 25629 3.724478 AGACATCACCCTCATCTTACCA 58.276 45.455 0.00 0.00 0.00 3.25
5965 25630 4.261656 CGTAGACATCACCCTCATCTTACC 60.262 50.000 0.00 0.00 0.00 2.85
5966 25631 4.261656 CCGTAGACATCACCCTCATCTTAC 60.262 50.000 0.00 0.00 0.00 2.34
5967 25632 3.889538 CCGTAGACATCACCCTCATCTTA 59.110 47.826 0.00 0.00 0.00 2.10
5968 25633 2.695666 CCGTAGACATCACCCTCATCTT 59.304 50.000 0.00 0.00 0.00 2.40
5969 25634 2.311463 CCGTAGACATCACCCTCATCT 58.689 52.381 0.00 0.00 0.00 2.90
5970 25635 2.032620 ACCGTAGACATCACCCTCATC 58.967 52.381 0.00 0.00 0.00 2.92
5971 25636 1.757118 CACCGTAGACATCACCCTCAT 59.243 52.381 0.00 0.00 0.00 2.90
5972 25637 1.182667 CACCGTAGACATCACCCTCA 58.817 55.000 0.00 0.00 0.00 3.86
5973 25638 0.460311 CCACCGTAGACATCACCCTC 59.540 60.000 0.00 0.00 0.00 4.30
5974 25639 1.614241 GCCACCGTAGACATCACCCT 61.614 60.000 0.00 0.00 0.00 4.34
5975 25640 1.153429 GCCACCGTAGACATCACCC 60.153 63.158 0.00 0.00 0.00 4.61
5976 25641 1.518572 CGCCACCGTAGACATCACC 60.519 63.158 0.00 0.00 0.00 4.02
5977 25642 0.525668 CTCGCCACCGTAGACATCAC 60.526 60.000 0.00 0.00 35.54 3.06
5978 25643 1.807226 CTCGCCACCGTAGACATCA 59.193 57.895 0.00 0.00 35.54 3.07
5979 25644 1.589196 GCTCGCCACCGTAGACATC 60.589 63.158 0.00 0.00 35.54 3.06
5980 25645 2.494918 GCTCGCCACCGTAGACAT 59.505 61.111 0.00 0.00 35.54 3.06
5981 25646 3.755628 GGCTCGCCACCGTAGACA 61.756 66.667 2.41 0.00 35.81 3.41
5982 25647 4.509737 GGGCTCGCCACCGTAGAC 62.510 72.222 10.51 0.00 37.98 2.59
5983 25648 4.753662 AGGGCTCGCCACCGTAGA 62.754 66.667 10.51 0.00 37.98 2.59
5984 25649 2.798148 AAAAGGGCTCGCCACCGTAG 62.798 60.000 10.51 0.00 37.98 3.51
5985 25650 2.886134 AAAAGGGCTCGCCACCGTA 61.886 57.895 10.51 0.00 37.98 4.02
5986 25651 4.265056 AAAAGGGCTCGCCACCGT 62.265 61.111 10.51 0.00 37.98 4.83
5987 25652 3.737172 CAAAAGGGCTCGCCACCG 61.737 66.667 10.51 0.00 37.98 4.94
5988 25653 3.373565 CCAAAAGGGCTCGCCACC 61.374 66.667 10.51 0.00 37.98 4.61
5989 25654 3.373565 CCCAAAAGGGCTCGCCAC 61.374 66.667 10.51 0.00 37.98 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.