Multiple sequence alignment - TraesCS5B01G247600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G247600 chr5B 100.000 9087 0 0 1 9087 429613455 429622541 0.000000e+00 16781.0
1 TraesCS5B01G247600 chr5B 82.558 172 25 3 8683 8850 429777411 429777581 7.350000e-31 147.0
2 TraesCS5B01G247600 chr5B 92.135 89 7 0 8598 8686 429896270 429896358 9.580000e-25 126.0
3 TraesCS5B01G247600 chr5D 97.327 6548 143 22 1874 8404 362993295 362999827 0.000000e+00 11093.0
4 TraesCS5B01G247600 chr5D 90.694 677 46 7 1 662 18078441 18079115 0.000000e+00 885.0
5 TraesCS5B01G247600 chr5D 92.500 560 25 7 668 1211 362992251 362992809 0.000000e+00 785.0
6 TraesCS5B01G247600 chr5D 92.807 431 27 3 1365 1792 362992867 362993296 1.000000e-173 621.0
7 TraesCS5B01G247600 chr5D 86.420 486 39 12 7995 8462 363219592 363220068 2.930000e-139 507.0
8 TraesCS5B01G247600 chr5D 87.688 333 29 9 7995 8321 363003354 363003680 2.400000e-100 377.0
9 TraesCS5B01G247600 chr5D 92.075 265 16 5 8762 9024 363000167 363000428 1.440000e-97 368.0
10 TraesCS5B01G247600 chr5D 93.143 175 10 2 6008 6180 5112186 5112360 1.170000e-63 255.0
11 TraesCS5B01G247600 chr5D 80.473 338 36 10 8309 8633 363004862 363005182 1.970000e-56 231.0
12 TraesCS5B01G247600 chr5D 86.782 174 21 2 8914 9087 363188024 363188195 9.310000e-45 193.0
13 TraesCS5B01G247600 chr5D 87.195 164 14 2 8914 9077 363788672 363788828 7.250000e-41 180.0
14 TraesCS5B01G247600 chr5D 82.123 179 16 7 8768 8944 363005231 363005395 1.230000e-28 139.0
15 TraesCS5B01G247600 chr5D 85.366 123 12 3 8439 8559 363221259 363221377 1.240000e-23 122.0
16 TraesCS5B01G247600 chr5D 94.340 53 3 0 8581 8633 363222221 363222273 2.100000e-11 82.4
17 TraesCS5B01G247600 chr5A 91.460 2541 157 30 6169 8656 464476715 464479248 0.000000e+00 3435.0
18 TraesCS5B01G247600 chr5A 88.956 1331 97 23 1874 3189 464472389 464473684 0.000000e+00 1598.0
19 TraesCS5B01G247600 chr5A 89.419 1257 99 15 4764 6006 464475477 464476713 0.000000e+00 1554.0
20 TraesCS5B01G247600 chr5A 91.216 979 52 17 3700 4669 464474440 464475393 0.000000e+00 1301.0
21 TraesCS5B01G247600 chr5A 94.022 552 24 7 668 1211 464471142 464471692 0.000000e+00 828.0
22 TraesCS5B01G247600 chr5A 91.993 587 31 10 1208 1790 464471734 464472308 0.000000e+00 809.0
23 TraesCS5B01G247600 chr5A 92.379 538 18 12 3172 3700 464473870 464474393 0.000000e+00 745.0
24 TraesCS5B01G247600 chr5A 85.030 668 64 21 7996 8638 464485465 464486121 0.000000e+00 647.0
25 TraesCS5B01G247600 chr5A 84.428 411 40 13 8683 9084 464479167 464479562 5.150000e-102 383.0
26 TraesCS5B01G247600 chr7D 89.912 684 52 7 1 668 152110135 152110817 0.000000e+00 865.0
27 TraesCS5B01G247600 chr7D 93.678 174 9 1 6007 6178 5492210 5492037 9.050000e-65 259.0
28 TraesCS5B01G247600 chr2D 90.105 667 50 6 17 668 20602727 20602062 0.000000e+00 852.0
29 TraesCS5B01G247600 chr2A 88.995 627 53 6 57 668 765861436 765860811 0.000000e+00 761.0
30 TraesCS5B01G247600 chr2B 85.673 684 80 9 1 668 644512579 644513260 0.000000e+00 704.0
31 TraesCS5B01G247600 chr4B 85.627 654 53 14 1 639 9932474 9933101 0.000000e+00 649.0
32 TraesCS5B01G247600 chr4B 95.152 165 6 1 6008 6170 429241920 429242084 9.050000e-65 259.0
33 TraesCS5B01G247600 chr1A 94.798 173 7 1 6001 6171 11628343 11628171 1.500000e-67 268.0
34 TraesCS5B01G247600 chr1A 96.667 90 3 0 1786 1875 589498368 589498457 5.680000e-32 150.0
35 TraesCS5B01G247600 chr4A 95.181 166 6 1 6007 6170 665604121 665604286 2.520000e-65 261.0
36 TraesCS5B01G247600 chr4A 94.624 93 5 0 1784 1876 642603537 642603629 2.640000e-30 145.0
37 TraesCS5B01G247600 chr4A 88.000 100 11 1 5033 5131 566296049 566295950 5.760000e-22 117.0
38 TraesCS5B01G247600 chr6D 94.643 168 7 1 6005 6170 218407377 218407210 9.050000e-65 259.0
39 TraesCS5B01G247600 chr6D 88.614 202 17 5 6007 6206 460272700 460272503 3.280000e-59 241.0
40 TraesCS5B01G247600 chr6D 95.745 94 2 1 1790 1883 465043837 465043928 5.680000e-32 150.0
41 TraesCS5B01G247600 chr3B 95.152 165 6 1 6008 6170 372838606 372838442 9.050000e-65 259.0
42 TraesCS5B01G247600 chr3B 92.929 99 7 0 1792 1890 71400462 71400364 2.640000e-30 145.0
43 TraesCS5B01G247600 chr3B 91.089 101 7 2 1780 1878 729205874 729205974 1.590000e-27 135.0
44 TraesCS5B01G247600 chr4D 96.552 87 3 0 1791 1877 492602236 492602150 2.640000e-30 145.0
45 TraesCS5B01G247600 chr3D 96.552 87 3 0 1789 1875 13181900 13181986 2.640000e-30 145.0
46 TraesCS5B01G247600 chr7B 93.548 93 6 0 1784 1876 518396374 518396466 1.230000e-28 139.0
47 TraesCS5B01G247600 chr7B 93.548 93 6 0 1784 1876 518404745 518404837 1.230000e-28 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G247600 chr5B 429613455 429622541 9086 False 16781.000000 16781 100.000000 1 9087 1 chr5B.!!$F1 9086
1 TraesCS5B01G247600 chr5D 362992251 363005395 13144 False 1944.857143 11093 89.284714 668 9024 7 chr5D.!!$F5 8356
2 TraesCS5B01G247600 chr5D 18078441 18079115 674 False 885.000000 885 90.694000 1 662 1 chr5D.!!$F2 661
3 TraesCS5B01G247600 chr5D 363219592 363222273 2681 False 237.133333 507 88.708667 7995 8633 3 chr5D.!!$F6 638
4 TraesCS5B01G247600 chr5A 464471142 464479562 8420 False 1331.625000 3435 90.484125 668 9084 8 chr5A.!!$F2 8416
5 TraesCS5B01G247600 chr5A 464485465 464486121 656 False 647.000000 647 85.030000 7996 8638 1 chr5A.!!$F1 642
6 TraesCS5B01G247600 chr7D 152110135 152110817 682 False 865.000000 865 89.912000 1 668 1 chr7D.!!$F1 667
7 TraesCS5B01G247600 chr2D 20602062 20602727 665 True 852.000000 852 90.105000 17 668 1 chr2D.!!$R1 651
8 TraesCS5B01G247600 chr2A 765860811 765861436 625 True 761.000000 761 88.995000 57 668 1 chr2A.!!$R1 611
9 TraesCS5B01G247600 chr2B 644512579 644513260 681 False 704.000000 704 85.673000 1 668 1 chr2B.!!$F1 667
10 TraesCS5B01G247600 chr4B 9932474 9933101 627 False 649.000000 649 85.627000 1 639 1 chr4B.!!$F1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 223 0.882927 CAAAAAGGAGTCCGGCGACA 60.883 55.000 9.30 0.00 41.87 4.35 F
1211 1246 0.105039 GATCACCCGTAGCTTCCCTG 59.895 60.000 0.00 0.00 0.00 4.45 F
1804 1894 0.324091 TGAACTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46 F
2314 2411 0.950555 TGTCACCTTCTCATGCGTGC 60.951 55.000 0.00 0.00 0.00 5.34 F
2759 2857 2.039084 CCAGGCACTTGAGAGGTAAACT 59.961 50.000 0.00 0.00 34.60 2.66 F
3337 3646 2.673043 GCATGCTTAACAATGTGCTGCT 60.673 45.455 11.37 0.00 31.79 4.24 F
4301 4664 1.202855 AGAGAATGTGCACAGCCAACT 60.203 47.619 25.84 17.52 0.00 3.16 F
5478 5878 0.974010 ATCCGCCGTCCTGGACTTAA 60.974 55.000 23.49 6.07 42.00 1.85 F
6266 6678 0.913451 ATTCCTGGCACTCTGCTCCT 60.913 55.000 0.00 0.00 44.28 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1669 1759 0.383590 GCATAGCTGCTCTCGACTGA 59.616 55.000 4.91 0.0 45.32 3.41 R
2759 2857 1.072173 ACAGCATGCAGTACAAGGTCA 59.928 47.619 21.98 0.0 42.53 4.02 R
3714 4077 2.769663 ACTAGTTTATCGGGCATGGACA 59.230 45.455 0.00 0.0 0.00 4.02 R
3813 4176 4.999950 AGCTATAAGTGCTGGATGTTATGC 59.000 41.667 0.00 0.0 39.56 3.14 R
3947 4310 5.053978 ACAGAAACCTTTCCTCTCACAAT 57.946 39.130 0.00 0.0 37.92 2.71 R
5028 5423 1.290009 GCAACCCAATGCCTGACAC 59.710 57.895 0.00 0.0 40.49 3.67 R
5980 6390 0.177836 AAAACAACAGCAACTGGGCC 59.822 50.000 0.00 0.0 35.51 5.80 R
7449 7874 1.341383 CCTGAAAGACAAGGGATGGGG 60.341 57.143 0.00 0.0 34.07 4.96 R
8236 8673 1.202463 CGGTGTGGTTTTCATGGCAAA 60.202 47.619 0.00 0.0 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 4.330250 CTTCATGATCCAGAAACACCTGT 58.670 43.478 0.00 0.00 32.43 4.00
112 113 1.071385 CCTGTTGGACTTCTCTGCTGT 59.929 52.381 0.00 0.00 34.57 4.40
207 223 0.882927 CAAAAAGGAGTCCGGCGACA 60.883 55.000 9.30 0.00 41.87 4.35
252 268 3.332493 GACGACGGAGCCGCTGTAA 62.332 63.158 9.14 0.00 44.19 2.41
374 390 1.004440 GGTGGTGCTGGAGTCTGAC 60.004 63.158 0.00 0.00 0.00 3.51
387 403 2.894126 GAGTCTGACTCCCTCACTTTGA 59.106 50.000 24.05 0.00 39.28 2.69
633 650 1.424493 CGATCTTGCGGCACCTTCTC 61.424 60.000 0.05 0.00 0.00 2.87
649 666 6.725246 CACCTTCTCGTTAATGAAACACTTT 58.275 36.000 0.00 0.00 38.03 2.66
723 740 2.925706 TGCCGGCCCACAAGTCTA 60.926 61.111 26.77 0.00 0.00 2.59
724 741 2.349755 GCCGGCCCACAAGTCTAA 59.650 61.111 18.11 0.00 0.00 2.10
725 742 2.038837 GCCGGCCCACAAGTCTAAC 61.039 63.158 18.11 0.00 0.00 2.34
726 743 1.677552 CCGGCCCACAAGTCTAACT 59.322 57.895 0.00 0.00 0.00 2.24
730 747 2.674177 CGGCCCACAAGTCTAACTACTG 60.674 54.545 0.00 0.00 0.00 2.74
769 790 4.336433 CGTGTGAATTTCAGCCCATAGATT 59.664 41.667 0.00 0.00 0.00 2.40
999 1034 2.851071 GCGTGCGCTAGAGGGAGAT 61.851 63.158 9.73 0.00 38.26 2.75
1198 1233 0.741221 GACGCCTGGTTCAGATCACC 60.741 60.000 0.00 0.00 32.44 4.02
1211 1246 0.105039 GATCACCCGTAGCTTCCCTG 59.895 60.000 0.00 0.00 0.00 4.45
1213 1248 1.079127 CACCCGTAGCTTCCCTGTG 60.079 63.158 0.00 0.00 0.00 3.66
1214 1249 1.229082 ACCCGTAGCTTCCCTGTGA 60.229 57.895 0.00 0.00 0.00 3.58
1224 1309 2.733227 GCTTCCCTGTGATTTTCATGCG 60.733 50.000 0.00 0.00 0.00 4.73
1233 1318 4.219033 GTGATTTTCATGCGTCTTTCGTT 58.781 39.130 0.00 0.00 42.13 3.85
1242 1327 1.782371 GCGTCTTTCGTTTTAGAGCGC 60.782 52.381 0.00 0.00 42.13 5.92
1245 1330 1.717645 TCTTTCGTTTTAGAGCGCGAC 59.282 47.619 12.10 2.22 32.89 5.19
1255 1340 0.666274 AGAGCGCGACGATTTGTTGA 60.666 50.000 12.10 0.00 33.36 3.18
1262 1347 3.659735 GCGACGATTTGTTGATGTAGTG 58.340 45.455 0.00 0.00 33.36 2.74
1268 1353 1.803334 TTGTTGATGTAGTGGCGGAC 58.197 50.000 0.00 0.00 0.00 4.79
1285 1370 3.424529 GCGGACGTGTCAATATAAGCTAC 59.575 47.826 0.00 0.00 0.00 3.58
1318 1403 4.761235 CGCAGCTTTATGGATTGATGAT 57.239 40.909 0.00 0.00 0.00 2.45
1319 1404 5.117355 CGCAGCTTTATGGATTGATGATT 57.883 39.130 0.00 0.00 0.00 2.57
1320 1405 4.915667 CGCAGCTTTATGGATTGATGATTG 59.084 41.667 0.00 0.00 0.00 2.67
1321 1406 4.684703 GCAGCTTTATGGATTGATGATTGC 59.315 41.667 0.00 0.00 0.00 3.56
1338 1425 5.670485 TGATTGCCGTATTGAGTACTGATT 58.330 37.500 0.00 0.00 0.00 2.57
1345 1432 5.749109 CCGTATTGAGTACTGATTTCTGGAC 59.251 44.000 0.00 0.00 0.00 4.02
1404 1491 5.711976 ACTTATAAACTGCTGATGTGGCTTT 59.288 36.000 0.00 0.00 0.00 3.51
1570 1657 6.371809 TTCTCTGAAACGTAAACATGCTTT 57.628 33.333 0.00 0.00 0.00 3.51
1571 1658 6.371809 TCTCTGAAACGTAAACATGCTTTT 57.628 33.333 0.00 0.00 0.00 2.27
1621 1710 5.563842 GCGATTGGATACTGACTCAAAAAG 58.436 41.667 0.00 0.00 37.61 2.27
1634 1724 7.338449 ACTGACTCAAAAAGCAAACCTACTAAA 59.662 33.333 0.00 0.00 0.00 1.85
1755 1845 1.440145 GCCGCTTCCTCCTTGCATAC 61.440 60.000 0.00 0.00 0.00 2.39
1790 1880 6.639686 CACGTAACAGTTAGTGTGTATGAACT 59.360 38.462 13.89 0.00 40.26 3.01
1792 1882 7.805071 ACGTAACAGTTAGTGTGTATGAACTAC 59.195 37.037 0.00 0.00 40.26 2.73
1793 1883 8.019669 CGTAACAGTTAGTGTGTATGAACTACT 58.980 37.037 0.00 0.00 40.26 2.57
1794 1884 9.339492 GTAACAGTTAGTGTGTATGAACTACTC 57.661 37.037 0.00 0.00 40.26 2.59
1795 1885 6.921914 ACAGTTAGTGTGTATGAACTACTCC 58.078 40.000 0.00 0.00 38.28 3.85
1796 1886 6.071503 ACAGTTAGTGTGTATGAACTACTCCC 60.072 42.308 0.00 0.00 38.28 4.30
1797 1887 6.153000 CAGTTAGTGTGTATGAACTACTCCCT 59.847 42.308 0.00 0.00 31.05 4.20
1799 1889 4.024670 AGTGTGTATGAACTACTCCCTCC 58.975 47.826 0.00 0.00 0.00 4.30
1801 1891 3.022406 GTGTATGAACTACTCCCTCCGT 58.978 50.000 0.00 0.00 0.00 4.69
1802 1892 3.066481 GTGTATGAACTACTCCCTCCGTC 59.934 52.174 0.00 0.00 0.00 4.79
1803 1893 1.777941 ATGAACTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
1804 1894 0.324091 TGAACTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
1805 1895 0.324091 GAACTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
1807 1897 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
1811 1901 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1812 1902 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1813 1903 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1815 1905 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1816 1906 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
1817 1907 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
1818 1908 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
1819 1909 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
1821 1911 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
1822 1912 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
1823 1913 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
1824 1914 8.066000 CCGTCCCATAATATAAGAACGTTTTTC 58.934 37.037 7.42 0.00 0.00 2.29
1825 1915 8.605746 CGTCCCATAATATAAGAACGTTTTTCA 58.394 33.333 7.42 0.00 0.00 2.69
1828 1918 9.233232 CCCATAATATAAGAACGTTTTTCAAGC 57.767 33.333 7.42 0.00 0.00 4.01
1835 1925 8.728088 ATAAGAACGTTTTTCAAGCTAACATG 57.272 30.769 7.42 0.00 0.00 3.21
1836 1926 5.519722 AGAACGTTTTTCAAGCTAACATGG 58.480 37.500 0.46 0.00 0.00 3.66
1839 1929 5.656480 ACGTTTTTCAAGCTAACATGGTTT 58.344 33.333 0.00 0.00 0.00 3.27
1840 1930 5.518487 ACGTTTTTCAAGCTAACATGGTTTG 59.482 36.000 0.00 0.00 0.00 2.93
1841 1931 5.051106 CGTTTTTCAAGCTAACATGGTTTGG 60.051 40.000 0.00 0.00 0.00 3.28
1842 1932 5.860941 TTTTCAAGCTAACATGGTTTGGA 57.139 34.783 0.00 0.00 0.00 3.53
1843 1933 5.860941 TTTCAAGCTAACATGGTTTGGAA 57.139 34.783 0.00 0.00 0.00 3.53
1845 1935 5.860941 TCAAGCTAACATGGTTTGGAAAA 57.139 34.783 0.00 0.00 0.00 2.29
1846 1936 5.596845 TCAAGCTAACATGGTTTGGAAAAC 58.403 37.500 0.00 0.00 0.00 2.43
1847 1937 4.237349 AGCTAACATGGTTTGGAAAACG 57.763 40.909 0.00 0.00 0.00 3.60
1848 1938 3.634910 AGCTAACATGGTTTGGAAAACGT 59.365 39.130 0.00 0.00 0.00 3.99
1849 1939 4.098807 AGCTAACATGGTTTGGAAAACGTT 59.901 37.500 0.00 0.00 0.00 3.99
1850 1940 4.443063 GCTAACATGGTTTGGAAAACGTTC 59.557 41.667 0.00 0.00 0.00 3.95
1851 1941 4.729227 AACATGGTTTGGAAAACGTTCT 57.271 36.364 0.00 0.00 33.92 3.01
1852 1942 4.729227 ACATGGTTTGGAAAACGTTCTT 57.271 36.364 0.00 0.00 33.92 2.52
1853 1943 5.838531 ACATGGTTTGGAAAACGTTCTTA 57.161 34.783 0.00 0.00 33.92 2.10
1855 1945 7.513371 ACATGGTTTGGAAAACGTTCTTATA 57.487 32.000 0.00 0.00 33.92 0.98
1857 1947 8.581578 ACATGGTTTGGAAAACGTTCTTATATT 58.418 29.630 0.00 0.00 33.92 1.28
1861 1951 9.511144 GGTTTGGAAAACGTTCTTATATTATGG 57.489 33.333 0.00 0.00 33.92 2.74
1862 1952 9.511144 GTTTGGAAAACGTTCTTATATTATGGG 57.489 33.333 0.00 0.00 33.92 4.00
1863 1953 9.463902 TTTGGAAAACGTTCTTATATTATGGGA 57.536 29.630 0.00 0.00 33.92 4.37
1864 1954 8.441312 TGGAAAACGTTCTTATATTATGGGAC 57.559 34.615 0.00 0.00 33.92 4.46
2199 2296 7.674772 GGACTTACTCCATGGAGGTATATACTT 59.325 40.741 38.54 20.71 45.88 2.24
2310 2407 2.676839 CACATCTGTCACCTTCTCATGC 59.323 50.000 0.00 0.00 0.00 4.06
2314 2411 0.950555 TGTCACCTTCTCATGCGTGC 60.951 55.000 0.00 0.00 0.00 5.34
2340 2437 9.906660 CTTACTTTGCAAGAATATAAACAACCA 57.093 29.630 0.00 0.00 0.00 3.67
2396 2494 3.101643 AGGGCCCCATTTTACTTCTTC 57.898 47.619 21.43 0.00 0.00 2.87
2759 2857 2.039084 CCAGGCACTTGAGAGGTAAACT 59.961 50.000 0.00 0.00 34.60 2.66
2804 2903 9.051679 GTTTATTTTAAATGAACCTTGCCAACT 57.948 29.630 12.45 0.00 0.00 3.16
2829 2928 4.775780 TGTGCAGTATAGGGTACTTGACTT 59.224 41.667 0.00 0.00 0.00 3.01
2937 3036 5.184892 AGATCATGCTTGTCCCTTAAACT 57.815 39.130 0.00 0.00 0.00 2.66
3043 3145 3.070018 CAGTGATTTGCCTCGAGTTCTT 58.930 45.455 12.31 0.00 0.00 2.52
3107 3209 8.695456 ACCTCTTTTGAAACTTGTAATGTCATT 58.305 29.630 3.06 3.06 0.00 2.57
3108 3210 8.971321 CCTCTTTTGAAACTTGTAATGTCATTG 58.029 33.333 8.39 0.00 0.00 2.82
3115 3217 9.676195 TGAAACTTGTAATGTCATTGTGTATTG 57.324 29.630 8.39 0.00 0.00 1.90
3116 3218 8.519492 AAACTTGTAATGTCATTGTGTATTGC 57.481 30.769 8.39 0.00 0.00 3.56
3117 3219 6.620678 ACTTGTAATGTCATTGTGTATTGCC 58.379 36.000 8.39 0.00 0.00 4.52
3337 3646 2.673043 GCATGCTTAACAATGTGCTGCT 60.673 45.455 11.37 0.00 31.79 4.24
3714 4077 7.415877 GCATACCAAACTAATCCGGTTTGTAAT 60.416 37.037 8.06 1.54 46.81 1.89
3772 4135 8.722394 GGGTTTAGAGTTCTAGAATGAGTTTTG 58.278 37.037 8.75 0.00 0.00 2.44
3848 4211 7.362056 CCAGCACTTATAGCTACACAATTTGTT 60.362 37.037 0.00 0.00 41.14 2.83
3919 4282 8.035394 TGTTTTGGCTTAAACTTATTCACACAA 58.965 29.630 13.97 0.00 38.52 3.33
4106 4469 1.894466 CAACTGCCATGGTGGATTTCA 59.106 47.619 14.67 0.00 40.96 2.69
4243 4606 4.100189 ACTCAGGTGGTAGCTAATGATGTC 59.900 45.833 0.00 0.00 0.00 3.06
4301 4664 1.202855 AGAGAATGTGCACAGCCAACT 60.203 47.619 25.84 17.52 0.00 3.16
4742 5135 4.271590 CGATTGGCATCGTAATGTTTCA 57.728 40.909 10.01 0.00 46.23 2.69
4949 5344 9.134734 CTCTCAGTTTAATAGTTCTGACACTTC 57.865 37.037 0.00 0.00 34.05 3.01
4957 5352 4.338379 AGTTCTGACACTTCCCAACTAC 57.662 45.455 0.00 0.00 0.00 2.73
5263 5662 3.900601 TGTCCAGTGCCCAACAATAATTT 59.099 39.130 0.00 0.00 0.00 1.82
5478 5878 0.974010 ATCCGCCGTCCTGGACTTAA 60.974 55.000 23.49 6.07 42.00 1.85
5737 6137 5.006386 GCATTGGATAAAGTGGAGATAGGG 58.994 45.833 0.00 0.00 0.00 3.53
5948 6358 1.027357 AGTTTGCCACACTTCTGCAG 58.973 50.000 7.63 7.63 36.21 4.41
6024 6434 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
6131 6541 3.369157 GCTCCGTATGTAGTCCCTTGTTT 60.369 47.826 0.00 0.00 0.00 2.83
6138 6548 8.199449 CCGTATGTAGTCCCTTGTTTAAATCTA 58.801 37.037 0.00 0.00 0.00 1.98
6139 6549 9.590451 CGTATGTAGTCCCTTGTTTAAATCTAA 57.410 33.333 0.00 0.00 0.00 2.10
6230 6642 6.268414 ACAAAATTATCCTACCCCAATTGGT 58.732 36.000 22.91 8.27 42.62 3.67
6266 6678 0.913451 ATTCCTGGCACTCTGCTCCT 60.913 55.000 0.00 0.00 44.28 3.69
6503 6915 5.411669 GGGAAAAGAAGAAACGAAGATAGCA 59.588 40.000 0.00 0.00 0.00 3.49
6548 6960 5.587443 TGACAATGCCAATACTGAAGAGATG 59.413 40.000 0.00 0.00 0.00 2.90
6633 7045 3.785486 TCCATCGTTACAGAGCATTCAG 58.215 45.455 0.00 0.00 0.00 3.02
6899 7316 2.171341 ACCTCGAAAGACAAGGCTTC 57.829 50.000 0.00 0.00 35.39 3.86
7323 7740 4.285863 TGGACCTCAATTTGAAAGTTGGT 58.714 39.130 6.91 6.91 0.00 3.67
7341 7758 1.160137 GTGAGCGGCTGAAAATCACT 58.840 50.000 7.50 0.00 37.79 3.41
7387 7807 4.836125 AGTGTGCCACTAATTTCTGTTG 57.164 40.909 6.10 0.00 43.46 3.33
7388 7808 4.207165 AGTGTGCCACTAATTTCTGTTGT 58.793 39.130 6.10 0.00 43.46 3.32
7390 7810 5.127031 AGTGTGCCACTAATTTCTGTTGTTT 59.873 36.000 6.10 0.00 43.46 2.83
7391 7811 6.320164 AGTGTGCCACTAATTTCTGTTGTTTA 59.680 34.615 6.10 0.00 43.46 2.01
7449 7874 6.109359 ACATTAACACTGCTACCATCTTCTC 58.891 40.000 0.00 0.00 0.00 2.87
7635 8060 7.552050 TTAAATTCCCTGATTTTGTGGATGT 57.448 32.000 0.00 0.00 31.96 3.06
7716 8141 6.255950 GCGAAGGTACATTACATTCCTTTTC 58.744 40.000 0.00 0.00 44.15 2.29
7718 8143 6.598064 CGAAGGTACATTACATTCCTTTTCCT 59.402 38.462 0.00 0.00 44.15 3.36
7722 8147 8.585018 AGGTACATTACATTCCTTTTCCTTTTG 58.415 33.333 0.00 0.00 0.00 2.44
7723 8148 8.581578 GGTACATTACATTCCTTTTCCTTTTGA 58.418 33.333 0.00 0.00 0.00 2.69
7725 8150 8.250143 ACATTACATTCCTTTTCCTTTTGAGT 57.750 30.769 0.00 0.00 0.00 3.41
7940 8371 1.616374 TCGGGCTCAAAATCCCAAAAC 59.384 47.619 0.00 0.00 42.75 2.43
7967 8398 0.768221 TGGGAAGCCTGACCTGAAGT 60.768 55.000 0.00 0.00 0.00 3.01
7993 8424 0.400975 ATGGATCAGATGAGCAGCCC 59.599 55.000 0.00 0.00 30.87 5.19
8098 8529 0.797249 CGGAGTAGCTCGGTTTGACG 60.797 60.000 0.00 0.00 0.00 4.35
8205 8639 1.270550 GAGTGTTGTTGCCATCCCTTG 59.729 52.381 0.00 0.00 0.00 3.61
8280 8724 1.482593 ACATGGTGCTAGACTGCTACC 59.517 52.381 0.00 0.00 35.89 3.18
8281 8725 1.123928 ATGGTGCTAGACTGCTACCC 58.876 55.000 0.00 0.00 35.10 3.69
8283 8735 1.227002 GTGCTAGACTGCTACCCGC 60.227 63.158 0.00 0.00 39.77 6.13
8287 8739 2.356818 CTAGACTGCTACCCGCTGCC 62.357 65.000 0.00 0.00 40.84 4.85
8306 8758 1.269012 CCCCCTGTAACGTTCTACCA 58.731 55.000 2.82 0.00 0.00 3.25
8307 8759 1.206371 CCCCCTGTAACGTTCTACCAG 59.794 57.143 2.82 7.12 0.00 4.00
8308 8760 1.897802 CCCCTGTAACGTTCTACCAGT 59.102 52.381 2.82 0.00 0.00 4.00
8310 8762 3.244318 CCCCTGTAACGTTCTACCAGTTT 60.244 47.826 2.82 0.00 0.00 2.66
8311 8763 3.744426 CCCTGTAACGTTCTACCAGTTTG 59.256 47.826 2.82 0.00 0.00 2.93
8353 8805 3.126343 ACACAACTGTCAAACGGAACTTC 59.874 43.478 0.00 0.00 0.00 3.01
8357 8809 3.463944 ACTGTCAAACGGAACTTCGAAT 58.536 40.909 0.00 0.00 0.00 3.34
8362 8814 5.347635 TGTCAAACGGAACTTCGAATATGAG 59.652 40.000 0.00 0.00 0.00 2.90
8366 8818 2.540101 CGGAACTTCGAATATGAGTGCC 59.460 50.000 0.00 0.00 0.00 5.01
8400 8852 9.918630 CTAATTTGTTTGAGACATTTTGATCCT 57.081 29.630 0.00 0.00 38.26 3.24
8401 8853 8.597662 AATTTGTTTGAGACATTTTGATCCTG 57.402 30.769 0.00 0.00 38.26 3.86
8402 8854 6.713762 TTGTTTGAGACATTTTGATCCTGT 57.286 33.333 0.00 0.00 38.26 4.00
8403 8855 6.075762 TGTTTGAGACATTTTGATCCTGTG 57.924 37.500 0.00 0.00 32.00 3.66
8404 8856 5.827267 TGTTTGAGACATTTTGATCCTGTGA 59.173 36.000 0.00 0.00 32.00 3.58
8405 8857 6.491062 TGTTTGAGACATTTTGATCCTGTGAT 59.509 34.615 0.00 0.00 32.00 3.06
8406 8858 6.505044 TTGAGACATTTTGATCCTGTGATG 57.495 37.500 0.00 0.00 0.00 3.07
8408 8860 5.183530 AGACATTTTGATCCTGTGATGGA 57.816 39.130 0.00 0.00 40.82 3.41
8409 8861 5.573219 AGACATTTTGATCCTGTGATGGAA 58.427 37.500 0.00 0.00 39.85 3.53
8410 8862 5.651139 AGACATTTTGATCCTGTGATGGAAG 59.349 40.000 0.00 0.00 39.85 3.46
8411 8863 5.327732 ACATTTTGATCCTGTGATGGAAGT 58.672 37.500 0.00 0.00 39.85 3.01
8413 8865 2.408271 TGATCCTGTGATGGAAGTGC 57.592 50.000 0.00 0.00 39.85 4.40
8414 8866 1.629861 TGATCCTGTGATGGAAGTGCA 59.370 47.619 0.00 0.00 39.85 4.57
8419 8888 0.405198 TGTGATGGAAGTGCATGGGT 59.595 50.000 0.00 0.00 0.00 4.51
8490 10223 4.533919 AATCTCAGTGGTCTGTTCTCTG 57.466 45.455 0.00 0.00 41.91 3.35
8568 11120 6.318648 TGACATATCATTTGGTGGTAGAAAGC 59.681 38.462 0.00 0.00 0.00 3.51
8577 11132 2.541556 GTGGTAGAAAGCTAGAAGGCG 58.458 52.381 0.00 0.00 37.29 5.52
8579 11134 2.165845 TGGTAGAAAGCTAGAAGGCGTC 59.834 50.000 0.00 0.00 37.29 5.19
8633 11188 2.753966 CGCGCCAAGGAATGACTGG 61.754 63.158 0.00 0.00 0.00 4.00
8656 11211 2.041081 CAAAGGGGTGGATTCAGTACCA 59.959 50.000 0.00 0.00 36.19 3.25
8657 11212 2.286935 AGGGGTGGATTCAGTACCAT 57.713 50.000 0.00 0.00 38.48 3.55
8658 11213 1.846439 AGGGGTGGATTCAGTACCATG 59.154 52.381 0.00 0.00 38.48 3.66
8659 11214 1.564348 GGGGTGGATTCAGTACCATGT 59.436 52.381 0.00 0.00 38.48 3.21
8660 11215 2.643551 GGGTGGATTCAGTACCATGTG 58.356 52.381 0.00 0.00 38.48 3.21
8661 11216 2.026262 GGGTGGATTCAGTACCATGTGT 60.026 50.000 0.00 0.00 38.48 3.72
8662 11217 3.270877 GGTGGATTCAGTACCATGTGTC 58.729 50.000 0.00 0.00 38.48 3.67
8663 11218 3.270877 GTGGATTCAGTACCATGTGTCC 58.729 50.000 0.00 0.00 38.48 4.02
8664 11219 2.909662 TGGATTCAGTACCATGTGTCCA 59.090 45.455 0.00 0.00 34.64 4.02
8686 11241 2.483877 TGTAACACAGTACGGGTAGACG 59.516 50.000 0.00 0.00 40.31 4.18
8688 11243 1.609208 ACACAGTACGGGTAGACGTT 58.391 50.000 0.00 0.00 46.25 3.99
8689 11244 1.267806 ACACAGTACGGGTAGACGTTG 59.732 52.381 0.00 0.00 46.25 4.10
8690 11245 1.536766 CACAGTACGGGTAGACGTTGA 59.463 52.381 0.00 0.00 46.25 3.18
8691 11246 1.537202 ACAGTACGGGTAGACGTTGAC 59.463 52.381 0.00 0.00 46.25 3.18
8692 11247 0.798776 AGTACGGGTAGACGTTGACG 59.201 55.000 1.41 1.41 46.25 4.35
8693 11248 0.796312 GTACGGGTAGACGTTGACGA 59.204 55.000 10.87 0.00 46.25 4.20
8694 11249 1.196808 GTACGGGTAGACGTTGACGAA 59.803 52.381 10.87 0.00 46.25 3.85
8695 11250 0.883833 ACGGGTAGACGTTGACGAAT 59.116 50.000 10.87 0.86 46.25 3.34
8696 11251 1.265568 CGGGTAGACGTTGACGAATG 58.734 55.000 10.87 0.00 43.02 2.67
8697 11252 1.636988 GGGTAGACGTTGACGAATGG 58.363 55.000 10.87 0.00 43.02 3.16
8698 11253 1.203052 GGGTAGACGTTGACGAATGGA 59.797 52.381 10.87 0.00 43.02 3.41
8699 11254 2.353011 GGGTAGACGTTGACGAATGGAA 60.353 50.000 10.87 0.00 43.02 3.53
8700 11255 2.921754 GGTAGACGTTGACGAATGGAAG 59.078 50.000 10.87 0.00 43.02 3.46
8701 11256 2.080286 AGACGTTGACGAATGGAAGG 57.920 50.000 10.87 0.00 43.02 3.46
8702 11257 1.616865 AGACGTTGACGAATGGAAGGA 59.383 47.619 10.87 0.00 43.02 3.36
8703 11258 2.036733 AGACGTTGACGAATGGAAGGAA 59.963 45.455 10.87 0.00 43.02 3.36
8704 11259 2.140717 ACGTTGACGAATGGAAGGAAC 58.859 47.619 10.87 0.00 43.02 3.62
8705 11260 2.139917 CGTTGACGAATGGAAGGAACA 58.860 47.619 0.00 0.00 43.02 3.18
8706 11261 2.096417 CGTTGACGAATGGAAGGAACAC 60.096 50.000 0.00 0.00 43.02 3.32
8707 11262 2.178912 TGACGAATGGAAGGAACACC 57.821 50.000 0.00 0.00 0.00 4.16
8708 11263 1.418264 TGACGAATGGAAGGAACACCA 59.582 47.619 0.00 0.00 40.63 4.17
8709 11264 1.804748 GACGAATGGAAGGAACACCAC 59.195 52.381 0.00 0.00 39.43 4.16
8710 11265 0.796312 CGAATGGAAGGAACACCACG 59.204 55.000 0.00 0.00 39.43 4.94
8711 11266 1.876416 CGAATGGAAGGAACACCACGT 60.876 52.381 0.00 0.00 39.43 4.49
8712 11267 1.804748 GAATGGAAGGAACACCACGTC 59.195 52.381 0.00 0.00 39.43 4.34
8713 11268 0.036306 ATGGAAGGAACACCACGTCC 59.964 55.000 0.00 0.00 39.43 4.79
8714 11269 1.338890 TGGAAGGAACACCACGTCCA 61.339 55.000 0.00 0.00 32.88 4.02
8715 11270 0.883370 GGAAGGAACACCACGTCCAC 60.883 60.000 0.00 0.00 0.00 4.02
8716 11271 0.179067 GAAGGAACACCACGTCCACA 60.179 55.000 0.00 0.00 0.00 4.17
8717 11272 0.253610 AAGGAACACCACGTCCACAA 59.746 50.000 0.00 0.00 0.00 3.33
8718 11273 0.463116 AGGAACACCACGTCCACAAC 60.463 55.000 0.00 0.00 0.00 3.32
8719 11274 0.463116 GGAACACCACGTCCACAACT 60.463 55.000 0.00 0.00 0.00 3.16
8720 11275 0.655733 GAACACCACGTCCACAACTG 59.344 55.000 0.00 0.00 0.00 3.16
8721 11276 0.746563 AACACCACGTCCACAACTGG 60.747 55.000 0.00 0.00 39.23 4.00
8722 11277 1.145156 CACCACGTCCACAACTGGA 59.855 57.895 0.00 0.00 45.11 3.86
8728 11283 2.110213 TCCACAACTGGACGTGCC 59.890 61.111 4.04 0.43 42.15 5.01
8729 11284 2.203139 CCACAACTGGACGTGCCA 60.203 61.111 4.04 5.58 46.96 4.92
8736 11291 4.713946 TGGACGTGCCAAGGAATC 57.286 55.556 4.04 0.00 45.87 2.52
8737 11292 1.757949 TGGACGTGCCAAGGAATCA 59.242 52.632 4.04 0.00 45.87 2.57
8738 11293 0.605319 TGGACGTGCCAAGGAATCAC 60.605 55.000 4.04 0.00 45.87 3.06
8739 11294 0.321653 GGACGTGCCAAGGAATCACT 60.322 55.000 0.00 0.00 36.34 3.41
8740 11295 0.798776 GACGTGCCAAGGAATCACTG 59.201 55.000 0.00 0.00 0.00 3.66
8741 11296 0.396435 ACGTGCCAAGGAATCACTGA 59.604 50.000 0.00 0.00 0.00 3.41
8742 11297 1.003580 ACGTGCCAAGGAATCACTGAT 59.996 47.619 0.00 0.00 0.00 2.90
8743 11298 1.667724 CGTGCCAAGGAATCACTGATC 59.332 52.381 0.00 0.00 0.00 2.92
8744 11299 2.715046 GTGCCAAGGAATCACTGATCA 58.285 47.619 0.00 0.00 0.00 2.92
8745 11300 3.084039 GTGCCAAGGAATCACTGATCAA 58.916 45.455 0.00 0.00 0.00 2.57
8746 11301 3.128242 GTGCCAAGGAATCACTGATCAAG 59.872 47.826 0.00 0.00 0.00 3.02
8747 11302 2.686915 GCCAAGGAATCACTGATCAAGG 59.313 50.000 0.00 0.00 0.00 3.61
8748 11303 3.285484 CCAAGGAATCACTGATCAAGGG 58.715 50.000 0.00 0.00 0.00 3.95
8749 11304 3.285484 CAAGGAATCACTGATCAAGGGG 58.715 50.000 0.00 0.00 0.00 4.79
8750 11305 1.849039 AGGAATCACTGATCAAGGGGG 59.151 52.381 0.00 0.00 0.00 5.40
8751 11306 1.685148 GAATCACTGATCAAGGGGGC 58.315 55.000 0.00 0.00 0.00 5.80
8752 11307 0.107017 AATCACTGATCAAGGGGGCG 60.107 55.000 0.00 0.00 0.00 6.13
8753 11308 1.987807 ATCACTGATCAAGGGGGCGG 61.988 60.000 0.00 0.00 0.00 6.13
8754 11309 2.285368 ACTGATCAAGGGGGCGGA 60.285 61.111 0.00 0.00 0.00 5.54
8755 11310 1.694169 ACTGATCAAGGGGGCGGAT 60.694 57.895 0.00 0.00 0.00 4.18
8756 11311 1.281925 ACTGATCAAGGGGGCGGATT 61.282 55.000 0.00 0.00 0.00 3.01
8757 11312 0.536006 CTGATCAAGGGGGCGGATTC 60.536 60.000 0.00 0.00 0.00 2.52
8758 11313 1.278302 TGATCAAGGGGGCGGATTCA 61.278 55.000 0.00 0.00 0.00 2.57
8759 11314 0.536006 GATCAAGGGGGCGGATTCAG 60.536 60.000 0.00 0.00 0.00 3.02
8760 11315 1.281925 ATCAAGGGGGCGGATTCAGT 61.282 55.000 0.00 0.00 0.00 3.41
8761 11316 0.619255 TCAAGGGGGCGGATTCAGTA 60.619 55.000 0.00 0.00 0.00 2.74
8762 11317 0.463833 CAAGGGGGCGGATTCAGTAC 60.464 60.000 0.00 0.00 0.00 2.73
8765 11320 1.146263 GGGGCGGATTCAGTACCTG 59.854 63.158 0.00 0.00 0.00 4.00
8772 11327 2.952978 CGGATTCAGTACCTGCTAGAGT 59.047 50.000 0.00 0.00 0.00 3.24
8855 11411 0.325272 GGTCCTGTGTCCCTTCTTCC 59.675 60.000 0.00 0.00 0.00 3.46
8857 11413 1.192146 TCCTGTGTCCCTTCTTCCGG 61.192 60.000 0.00 0.00 0.00 5.14
8870 11426 4.383118 CCTTCTTCCGGAGCTAAATCTTCA 60.383 45.833 3.34 0.00 0.00 3.02
8881 11437 7.087007 GGAGCTAAATCTTCAAACCTTTTCAG 58.913 38.462 0.00 0.00 0.00 3.02
8882 11438 7.255625 GGAGCTAAATCTTCAAACCTTTTCAGT 60.256 37.037 0.00 0.00 0.00 3.41
8897 11453 6.140786 CCTTTTCAGTACGTTTTAGCCTTTC 58.859 40.000 0.00 0.00 0.00 2.62
8937 11493 1.746220 TGGTGGTCTTCAAAAACGGTG 59.254 47.619 0.00 0.00 0.00 4.94
9039 11595 0.110509 TGCGTACGTTGAGTCGAGAC 60.111 55.000 17.90 0.00 34.70 3.36
9042 11598 1.589076 GTACGTTGAGTCGAGACACG 58.411 55.000 11.35 11.35 44.09 4.49
9050 11606 2.547798 TCGAGACACGACACGACG 59.452 61.111 0.00 0.00 46.45 5.12
9051 11607 2.499098 CGAGACACGACACGACGG 60.499 66.667 0.00 0.00 45.77 4.79
9084 11640 1.005867 CGACCGGACGGGAGAAAAA 60.006 57.895 18.76 0.00 39.97 1.94
9085 11641 1.287041 CGACCGGACGGGAGAAAAAC 61.287 60.000 18.76 0.00 39.97 2.43
9086 11642 0.249996 GACCGGACGGGAGAAAAACA 60.250 55.000 9.46 0.00 39.97 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.209504 CGTGTAGTCCACCAATCCCAT 59.790 52.381 0.00 0.00 41.26 4.00
96 97 1.134128 TGCAACAGCAGAGAAGTCCAA 60.134 47.619 0.00 0.00 33.59 3.53
112 113 0.749818 TGCCCTCGTTGTTTCTGCAA 60.750 50.000 0.00 0.00 0.00 4.08
207 223 3.600388 GCAGAATATAACCATAGGCGCT 58.400 45.455 7.64 0.00 0.00 5.92
311 327 3.982316 CTCCATCGCTGCCAGGCAA 62.982 63.158 17.03 0.00 38.41 4.52
324 340 1.454479 CATTTGCGGCTCCCTCCAT 60.454 57.895 0.00 0.00 0.00 3.41
374 390 2.290514 TGCTTGGATCAAAGTGAGGGAG 60.291 50.000 11.56 0.00 0.00 4.30
387 403 0.036010 CCGGAGTTGAGTGCTTGGAT 60.036 55.000 0.00 0.00 0.00 3.41
689 706 1.557269 GCACCTGTGGACCCATCTCT 61.557 60.000 0.00 0.00 0.00 3.10
723 740 4.104831 AGAAGCCTAATGGGTCAGTAGTT 58.895 43.478 2.49 0.00 44.35 2.24
724 741 3.707102 GAGAAGCCTAATGGGTCAGTAGT 59.293 47.826 2.49 0.00 44.35 2.73
725 742 3.243569 CGAGAAGCCTAATGGGTCAGTAG 60.244 52.174 0.00 0.00 44.35 2.57
726 743 2.693591 CGAGAAGCCTAATGGGTCAGTA 59.306 50.000 0.00 0.00 44.35 2.74
730 747 1.207329 ACACGAGAAGCCTAATGGGTC 59.793 52.381 0.00 0.00 44.35 4.46
769 790 1.381928 AATCGGAGGAGCGCGAAGTA 61.382 55.000 12.10 0.00 0.00 2.24
1029 1064 1.215655 GCTTGAAGTGACGACGCTGT 61.216 55.000 0.86 0.00 36.93 4.40
1198 1233 2.403252 AAATCACAGGGAAGCTACGG 57.597 50.000 0.00 0.00 0.00 4.02
1211 1246 3.810373 ACGAAAGACGCATGAAAATCAC 58.190 40.909 0.00 0.00 46.94 3.06
1213 1248 5.806089 AAAACGAAAGACGCATGAAAATC 57.194 34.783 0.00 0.00 46.94 2.17
1214 1249 6.664515 TCTAAAACGAAAGACGCATGAAAAT 58.335 32.000 0.00 0.00 46.94 1.82
1224 1309 1.717645 TCGCGCTCTAAAACGAAAGAC 59.282 47.619 5.56 0.00 0.00 3.01
1233 1318 1.705256 ACAAATCGTCGCGCTCTAAA 58.295 45.000 5.56 0.00 0.00 1.85
1242 1327 3.483574 GCCACTACATCAACAAATCGTCG 60.484 47.826 0.00 0.00 0.00 5.12
1245 1330 2.223021 CCGCCACTACATCAACAAATCG 60.223 50.000 0.00 0.00 0.00 3.34
1255 1340 1.214589 GACACGTCCGCCACTACAT 59.785 57.895 0.00 0.00 0.00 2.29
1262 1347 1.525619 GCTTATATTGACACGTCCGCC 59.474 52.381 0.00 0.00 0.00 6.13
1285 1370 3.764885 AAAGCTGCGCCTTACAAATAG 57.235 42.857 4.18 0.00 0.00 1.73
1294 1379 1.027357 CAATCCATAAAGCTGCGCCT 58.973 50.000 4.18 0.00 0.00 5.52
1297 1382 4.761235 ATCATCAATCCATAAAGCTGCG 57.239 40.909 0.00 0.00 0.00 5.18
1304 1389 6.714356 TCAATACGGCAATCATCAATCCATAA 59.286 34.615 0.00 0.00 0.00 1.90
1308 1393 4.516698 ACTCAATACGGCAATCATCAATCC 59.483 41.667 0.00 0.00 0.00 3.01
1309 1394 5.679734 ACTCAATACGGCAATCATCAATC 57.320 39.130 0.00 0.00 0.00 2.67
1311 1396 5.523552 CAGTACTCAATACGGCAATCATCAA 59.476 40.000 0.00 0.00 38.97 2.57
1312 1397 5.049828 CAGTACTCAATACGGCAATCATCA 58.950 41.667 0.00 0.00 38.97 3.07
1313 1398 5.289595 TCAGTACTCAATACGGCAATCATC 58.710 41.667 0.00 0.00 38.97 2.92
1314 1399 5.276461 TCAGTACTCAATACGGCAATCAT 57.724 39.130 0.00 0.00 38.97 2.45
1315 1400 4.729227 TCAGTACTCAATACGGCAATCA 57.271 40.909 0.00 0.00 38.97 2.57
1316 1401 6.480320 AGAAATCAGTACTCAATACGGCAATC 59.520 38.462 0.00 0.00 38.97 2.67
1317 1402 6.258727 CAGAAATCAGTACTCAATACGGCAAT 59.741 38.462 0.00 0.00 38.97 3.56
1318 1403 5.580691 CAGAAATCAGTACTCAATACGGCAA 59.419 40.000 0.00 0.00 38.97 4.52
1319 1404 5.109210 CAGAAATCAGTACTCAATACGGCA 58.891 41.667 0.00 0.00 38.97 5.69
1320 1405 4.508124 CCAGAAATCAGTACTCAATACGGC 59.492 45.833 0.00 0.00 38.97 5.68
1321 1406 5.749109 GTCCAGAAATCAGTACTCAATACGG 59.251 44.000 0.00 0.00 38.97 4.02
1338 1425 2.669569 GCGCAAGGCAGTCCAGAA 60.670 61.111 0.30 0.00 42.87 3.02
1570 1657 4.289410 AGTCCAGGCCATGCATACATATAA 59.711 41.667 5.01 0.00 33.67 0.98
1571 1658 3.845992 AGTCCAGGCCATGCATACATATA 59.154 43.478 5.01 0.00 33.67 0.86
1621 1710 9.827411 CTTAGTTCAGAAATTTAGTAGGTTTGC 57.173 33.333 0.00 0.00 0.00 3.68
1669 1759 0.383590 GCATAGCTGCTCTCGACTGA 59.616 55.000 4.91 0.00 45.32 3.41
1790 1880 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
1792 1882 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
1793 1883 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
1794 1884 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
1795 1885 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
1796 1886 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
1797 1887 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
1799 1889 8.605746 TGAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
1802 1892 9.233232 GCTTGAAAAACGTTCTTATATTATGGG 57.767 33.333 0.00 0.00 0.00 4.00
1811 1901 7.136119 CCATGTTAGCTTGAAAAACGTTCTTA 58.864 34.615 0.00 0.00 0.00 2.10
1812 1902 5.977129 CCATGTTAGCTTGAAAAACGTTCTT 59.023 36.000 0.00 0.00 0.00 2.52
1813 1903 5.067283 ACCATGTTAGCTTGAAAAACGTTCT 59.933 36.000 0.00 0.00 0.00 3.01
1815 1905 5.257082 ACCATGTTAGCTTGAAAAACGTT 57.743 34.783 0.00 0.00 0.00 3.99
1816 1906 4.911514 ACCATGTTAGCTTGAAAAACGT 57.088 36.364 0.00 0.00 0.00 3.99
1817 1907 5.051106 CCAAACCATGTTAGCTTGAAAAACG 60.051 40.000 0.00 0.00 0.00 3.60
1818 1908 6.045955 TCCAAACCATGTTAGCTTGAAAAAC 58.954 36.000 0.00 0.00 0.00 2.43
1819 1909 6.227298 TCCAAACCATGTTAGCTTGAAAAA 57.773 33.333 0.00 0.00 0.00 1.94
1821 1911 5.860941 TTCCAAACCATGTTAGCTTGAAA 57.139 34.783 0.00 0.00 0.00 2.69
1822 1912 5.860941 TTTCCAAACCATGTTAGCTTGAA 57.139 34.783 0.00 0.00 0.00 2.69
1823 1913 5.596845 GTTTTCCAAACCATGTTAGCTTGA 58.403 37.500 0.00 0.00 0.00 3.02
1824 1914 4.444056 CGTTTTCCAAACCATGTTAGCTTG 59.556 41.667 0.00 0.00 0.00 4.01
1825 1915 4.098807 ACGTTTTCCAAACCATGTTAGCTT 59.901 37.500 0.00 0.00 0.00 3.74
1826 1916 3.634910 ACGTTTTCCAAACCATGTTAGCT 59.365 39.130 0.00 0.00 0.00 3.32
1828 1918 5.827666 AGAACGTTTTCCAAACCATGTTAG 58.172 37.500 0.46 0.00 31.28 2.34
1831 1921 4.729227 AAGAACGTTTTCCAAACCATGT 57.271 36.364 0.46 0.00 31.28 3.21
1835 1925 9.511144 CCATAATATAAGAACGTTTTCCAAACC 57.489 33.333 0.46 0.00 31.28 3.27
1836 1926 9.511144 CCCATAATATAAGAACGTTTTCCAAAC 57.489 33.333 0.46 0.00 31.28 2.93
1839 1929 8.047911 TGTCCCATAATATAAGAACGTTTTCCA 58.952 33.333 0.46 0.00 31.28 3.53
1840 1930 8.441312 TGTCCCATAATATAAGAACGTTTTCC 57.559 34.615 0.46 0.00 31.28 3.13
1841 1931 9.321562 TCTGTCCCATAATATAAGAACGTTTTC 57.678 33.333 0.46 0.00 0.00 2.29
1842 1932 9.326413 CTCTGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
1843 1933 7.931948 CCTCTGTCCCATAATATAAGAACGTTT 59.068 37.037 0.46 0.00 0.00 3.60
1845 1935 6.014499 CCCTCTGTCCCATAATATAAGAACGT 60.014 42.308 0.00 0.00 0.00 3.99
1846 1936 6.210784 TCCCTCTGTCCCATAATATAAGAACG 59.789 42.308 0.00 0.00 0.00 3.95
1847 1937 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
1848 1938 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
1849 1939 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
1850 1940 8.846423 ATACTCCCTCTGTCCCATAATATAAG 57.154 38.462 0.00 0.00 0.00 1.73
1852 1942 9.710818 GTAATACTCCCTCTGTCCCATAATATA 57.289 37.037 0.00 0.00 0.00 0.86
1853 1943 8.410623 AGTAATACTCCCTCTGTCCCATAATAT 58.589 37.037 0.00 0.00 0.00 1.28
1855 1945 6.498651 CAGTAATACTCCCTCTGTCCCATAAT 59.501 42.308 0.00 0.00 0.00 1.28
1857 1947 5.135533 TCAGTAATACTCCCTCTGTCCCATA 59.864 44.000 0.00 0.00 0.00 2.74
1859 1949 3.271225 TCAGTAATACTCCCTCTGTCCCA 59.729 47.826 0.00 0.00 0.00 4.37
1860 1950 3.912248 TCAGTAATACTCCCTCTGTCCC 58.088 50.000 0.00 0.00 0.00 4.46
1861 1951 5.934402 TTTCAGTAATACTCCCTCTGTCC 57.066 43.478 0.00 0.00 0.00 4.02
1862 1952 8.466617 TCTATTTCAGTAATACTCCCTCTGTC 57.533 38.462 0.00 0.00 0.00 3.51
1863 1953 8.840200 TTCTATTTCAGTAATACTCCCTCTGT 57.160 34.615 0.00 0.00 0.00 3.41
1864 1954 9.535878 GTTTCTATTTCAGTAATACTCCCTCTG 57.464 37.037 0.00 0.00 0.00 3.35
1868 1958 9.327628 GGAAGTTTCTATTTCAGTAATACTCCC 57.672 37.037 0.00 0.00 0.00 4.30
1871 1961 9.892130 CCAGGAAGTTTCTATTTCAGTAATACT 57.108 33.333 0.00 0.00 0.00 2.12
1872 1962 8.613482 GCCAGGAAGTTTCTATTTCAGTAATAC 58.387 37.037 0.00 0.00 0.00 1.89
2096 2191 3.439476 GCCAGAATGCCAGATATGCTTAG 59.561 47.826 0.00 0.00 31.97 2.18
2199 2296 1.403679 CCTTTGCTTGTCAACGGAACA 59.596 47.619 0.00 0.00 44.40 3.18
2310 2407 7.748683 TGTTTATATTCTTGCAAAGTAAGCACG 59.251 33.333 0.00 0.00 46.34 5.34
2314 2411 9.906660 TGGTTGTTTATATTCTTGCAAAGTAAG 57.093 29.630 0.00 0.00 46.34 2.34
2468 2566 6.014669 ACAGCTGGGAAGCAAATAAAAACATA 60.015 34.615 19.93 0.00 37.25 2.29
2759 2857 1.072173 ACAGCATGCAGTACAAGGTCA 59.928 47.619 21.98 0.00 42.53 4.02
2804 2903 4.081862 GTCAAGTACCCTATACTGCACACA 60.082 45.833 0.00 0.00 0.00 3.72
2970 3069 6.316140 TGATGGATTTCACTTAATTCGGTCAG 59.684 38.462 0.00 0.00 0.00 3.51
3043 3145 5.062934 CGGTGAACTGTTAATCGCAGAATAA 59.937 40.000 0.00 0.00 43.58 1.40
3337 3646 6.770785 AGCTTCCAGTGTTACAATTTCTAACA 59.229 34.615 0.00 2.56 32.77 2.41
3714 4077 2.769663 ACTAGTTTATCGGGCATGGACA 59.230 45.455 0.00 0.00 0.00 4.02
3813 4176 4.999950 AGCTATAAGTGCTGGATGTTATGC 59.000 41.667 0.00 0.00 39.56 3.14
3848 4211 5.682234 TGAAAGATTCAGCTACCTCATGA 57.318 39.130 0.00 0.00 34.08 3.07
3947 4310 5.053978 ACAGAAACCTTTCCTCTCACAAT 57.946 39.130 0.00 0.00 37.92 2.71
3950 4313 5.236695 GTGTTACAGAAACCTTTCCTCTCAC 59.763 44.000 0.00 0.00 37.92 3.51
4301 4664 5.357878 GGGCTTCATGATTTGTCACTATCAA 59.642 40.000 0.00 0.00 34.69 2.57
4753 5146 8.606602 TGATCAAATACTCAGATTCATGAAACG 58.393 33.333 13.09 6.71 0.00 3.60
4949 5344 2.882761 TCATCTATCCGTCGTAGTTGGG 59.117 50.000 0.00 0.00 0.00 4.12
4957 5352 4.576873 ACCTAGCATATCATCTATCCGTCG 59.423 45.833 0.00 0.00 0.00 5.12
5028 5423 1.290009 GCAACCCAATGCCTGACAC 59.710 57.895 0.00 0.00 40.49 3.67
5263 5662 7.310664 GTCAAATCTCAATGCATTTCTCTGAA 58.689 34.615 9.83 0.00 0.00 3.02
5385 5785 8.031864 CACATCTCCGCAGAATCTATATAGTTT 58.968 37.037 9.58 7.62 30.24 2.66
5517 5917 9.009327 CACGCTGGTATAAATAACAAGAAAATG 57.991 33.333 0.00 0.00 28.00 2.32
5537 5937 0.387622 CTGATGGGCAAAACACGCTG 60.388 55.000 0.00 0.00 0.00 5.18
5708 6108 3.758023 TCCACTTTATCCAATGCACACTG 59.242 43.478 0.00 0.00 0.00 3.66
5948 6358 3.395639 TCACTTGTTACACGATTGTCCC 58.604 45.455 0.00 0.00 37.15 4.46
5980 6390 0.177836 AAAACAACAGCAACTGGGCC 59.822 50.000 0.00 0.00 35.51 5.80
6099 6509 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
6138 6548 8.981659 CCTCCATTCCCAAATATAAGTCTTTTT 58.018 33.333 0.00 0.00 0.00 1.94
6139 6549 7.565029 CCCTCCATTCCCAAATATAAGTCTTTT 59.435 37.037 0.00 0.00 0.00 2.27
6192 6604 9.362151 AGGATAATTTTGTTAGAGAACACCAAA 57.638 29.630 0.00 0.00 45.29 3.28
6196 6608 8.890718 GGGTAGGATAATTTTGTTAGAGAACAC 58.109 37.037 0.00 0.00 45.29 3.32
6230 6642 6.881065 GCCAGGAATTATGCAATGTATAGAGA 59.119 38.462 0.00 0.00 0.00 3.10
6266 6678 7.389330 TGCAATACTTAGAAAGAATCACGGAAA 59.611 33.333 0.00 0.00 0.00 3.13
6398 6810 3.454573 CCACCCGCCGTACAGCTA 61.455 66.667 0.00 0.00 0.00 3.32
6503 6915 2.151202 CCGTTATTGCTGTCACTGGTT 58.849 47.619 0.00 0.00 0.00 3.67
6548 6960 7.432350 AACAGACTCAGATTCATCTTGTTTC 57.568 36.000 0.00 0.00 32.11 2.78
6633 7045 2.605818 TGCAACGATGTAGCGGTAAATC 59.394 45.455 13.75 13.75 35.12 2.17
7275 7692 9.503427 AAAACTTCTTTAACTGATTTTGAGACG 57.497 29.630 0.00 0.00 0.00 4.18
7323 7740 1.806542 GAAGTGATTTTCAGCCGCTCA 59.193 47.619 0.00 0.00 0.00 4.26
7398 7818 8.451908 AAGTTTGCTCTTCTAAGAAAAGCTTA 57.548 30.769 0.00 0.00 38.05 3.09
7449 7874 1.341383 CCTGAAAGACAAGGGATGGGG 60.341 57.143 0.00 0.00 34.07 4.96
7635 8060 3.818210 TGAAGCTTGCTCACCGAATTTTA 59.182 39.130 2.10 0.00 0.00 1.52
7693 8118 6.598064 AGGAAAAGGAATGTAATGTACCTTCG 59.402 38.462 0.00 0.00 39.59 3.79
7716 8141 9.057089 ACAATTCACTTCTACTTACTCAAAAGG 57.943 33.333 0.00 0.00 0.00 3.11
7718 8143 9.607988 TGACAATTCACTTCTACTTACTCAAAA 57.392 29.630 0.00 0.00 0.00 2.44
7940 8371 2.295885 GTCAGGCTTCCCATCATCAAG 58.704 52.381 0.00 0.00 0.00 3.02
7967 8398 3.389983 TGCTCATCTGATCCATCATCACA 59.610 43.478 0.00 0.00 36.51 3.58
8205 8639 6.468543 GGATAGAATCCCTACATGAAGAACC 58.531 44.000 0.00 0.00 43.88 3.62
8235 8672 2.547642 CGGTGTGGTTTTCATGGCAAAT 60.548 45.455 0.00 0.00 0.00 2.32
8236 8673 1.202463 CGGTGTGGTTTTCATGGCAAA 60.202 47.619 0.00 0.00 0.00 3.68
8287 8739 1.206371 CTGGTAGAACGTTACAGGGGG 59.794 57.143 0.00 0.00 0.00 5.40
8300 8752 5.010933 TCACACCAAAAACAAACTGGTAGA 58.989 37.500 0.00 0.00 41.60 2.59
8301 8753 5.317733 TCACACCAAAAACAAACTGGTAG 57.682 39.130 0.00 0.00 41.60 3.18
8302 8754 5.186021 ACATCACACCAAAAACAAACTGGTA 59.814 36.000 0.00 0.00 41.60 3.25
8304 8756 4.502962 ACATCACACCAAAAACAAACTGG 58.497 39.130 0.00 0.00 36.24 4.00
8305 8757 5.163874 CCAACATCACACCAAAAACAAACTG 60.164 40.000 0.00 0.00 0.00 3.16
8306 8758 4.934602 CCAACATCACACCAAAAACAAACT 59.065 37.500 0.00 0.00 0.00 2.66
8307 8759 4.436718 GCCAACATCACACCAAAAACAAAC 60.437 41.667 0.00 0.00 0.00 2.93
8308 8760 3.686726 GCCAACATCACACCAAAAACAAA 59.313 39.130 0.00 0.00 0.00 2.83
8310 8762 2.234661 TGCCAACATCACACCAAAAACA 59.765 40.909 0.00 0.00 0.00 2.83
8311 8763 2.607180 GTGCCAACATCACACCAAAAAC 59.393 45.455 0.00 0.00 34.73 2.43
8335 8787 2.896168 TCGAAGTTCCGTTTGACAGTT 58.104 42.857 0.00 0.00 0.00 3.16
8342 8794 4.092968 GCACTCATATTCGAAGTTCCGTTT 59.907 41.667 3.35 0.00 0.00 3.60
8353 8805 3.804325 AGAATTGTCGGCACTCATATTCG 59.196 43.478 5.89 0.00 0.00 3.34
8357 8809 6.597672 ACAAATTAGAATTGTCGGCACTCATA 59.402 34.615 0.00 0.00 36.28 2.15
8362 8814 5.918011 TCAAACAAATTAGAATTGTCGGCAC 59.082 36.000 0.00 0.00 39.98 5.01
8366 8818 8.955061 ATGTCTCAAACAAATTAGAATTGTCG 57.045 30.769 0.00 0.00 42.37 4.35
8398 8850 1.100510 CCATGCACTTCCATCACAGG 58.899 55.000 0.00 0.00 0.00 4.00
8400 8852 0.405198 ACCCATGCACTTCCATCACA 59.595 50.000 0.00 0.00 0.00 3.58
8401 8853 1.549203 AACCCATGCACTTCCATCAC 58.451 50.000 0.00 0.00 0.00 3.06
8402 8854 2.308570 ACTAACCCATGCACTTCCATCA 59.691 45.455 0.00 0.00 0.00 3.07
8403 8855 2.945668 GACTAACCCATGCACTTCCATC 59.054 50.000 0.00 0.00 0.00 3.51
8404 8856 2.308570 TGACTAACCCATGCACTTCCAT 59.691 45.455 0.00 0.00 0.00 3.41
8405 8857 1.702401 TGACTAACCCATGCACTTCCA 59.298 47.619 0.00 0.00 0.00 3.53
8406 8858 2.489938 TGACTAACCCATGCACTTCC 57.510 50.000 0.00 0.00 0.00 3.46
8408 8860 3.356290 GGAATGACTAACCCATGCACTT 58.644 45.455 0.00 0.00 0.00 3.16
8409 8861 2.680805 CGGAATGACTAACCCATGCACT 60.681 50.000 0.00 0.00 0.00 4.40
8410 8862 1.670811 CGGAATGACTAACCCATGCAC 59.329 52.381 0.00 0.00 0.00 4.57
8411 8863 1.408127 CCGGAATGACTAACCCATGCA 60.408 52.381 0.00 0.00 0.00 3.96
8413 8865 2.093181 TCACCGGAATGACTAACCCATG 60.093 50.000 9.46 0.00 0.00 3.66
8414 8866 2.193127 TCACCGGAATGACTAACCCAT 58.807 47.619 9.46 0.00 0.00 4.00
8419 8888 3.386726 CCTACCATCACCGGAATGACTAA 59.613 47.826 9.46 0.00 0.00 2.24
8490 10223 3.994392 TGAGTTCCTCTTATTGACAACGC 59.006 43.478 0.00 0.00 0.00 4.84
8512 10245 4.037446 TCGTGCAAAAGGTTTTCTAAGCAT 59.963 37.500 0.00 0.00 34.21 3.79
8568 11120 0.982673 CGTTTGTCGACGCCTTCTAG 59.017 55.000 11.62 0.00 42.86 2.43
8577 11132 1.574134 TGTTCCTTCCGTTTGTCGAC 58.426 50.000 9.11 9.11 42.86 4.20
8579 11134 2.096417 GTGATGTTCCTTCCGTTTGTCG 60.096 50.000 0.00 0.00 39.52 4.35
8633 11188 2.586648 ACTGAATCCACCCCTTTGAC 57.413 50.000 0.00 0.00 0.00 3.18
8658 11213 2.991190 CCGTACTGTGTTACATGGACAC 59.009 50.000 21.12 21.12 45.80 3.67
8659 11214 2.028839 CCCGTACTGTGTTACATGGACA 60.029 50.000 0.00 0.00 0.00 4.02
8660 11215 2.028748 ACCCGTACTGTGTTACATGGAC 60.029 50.000 0.00 0.00 0.00 4.02
8661 11216 2.250031 ACCCGTACTGTGTTACATGGA 58.750 47.619 0.00 0.00 0.00 3.41
8662 11217 2.754946 ACCCGTACTGTGTTACATGG 57.245 50.000 0.00 0.00 0.00 3.66
8663 11218 4.418392 GTCTACCCGTACTGTGTTACATG 58.582 47.826 0.00 0.00 0.00 3.21
8664 11219 3.127548 CGTCTACCCGTACTGTGTTACAT 59.872 47.826 0.00 0.00 0.00 2.29
8686 11241 2.225727 GGTGTTCCTTCCATTCGTCAAC 59.774 50.000 0.00 0.00 0.00 3.18
8687 11242 2.158740 TGGTGTTCCTTCCATTCGTCAA 60.159 45.455 0.00 0.00 34.23 3.18
8688 11243 1.418264 TGGTGTTCCTTCCATTCGTCA 59.582 47.619 0.00 0.00 34.23 4.35
8689 11244 1.804748 GTGGTGTTCCTTCCATTCGTC 59.195 52.381 0.00 0.00 36.09 4.20
8690 11245 1.876416 CGTGGTGTTCCTTCCATTCGT 60.876 52.381 0.00 0.00 36.09 3.85
8691 11246 0.796312 CGTGGTGTTCCTTCCATTCG 59.204 55.000 0.00 0.00 36.09 3.34
8692 11247 1.804748 GACGTGGTGTTCCTTCCATTC 59.195 52.381 0.00 0.00 36.09 2.67
8693 11248 1.544759 GGACGTGGTGTTCCTTCCATT 60.545 52.381 0.00 0.00 36.09 3.16
8694 11249 0.036306 GGACGTGGTGTTCCTTCCAT 59.964 55.000 0.00 0.00 36.09 3.41
8695 11250 1.338890 TGGACGTGGTGTTCCTTCCA 61.339 55.000 0.00 0.00 36.34 3.53
8696 11251 0.883370 GTGGACGTGGTGTTCCTTCC 60.883 60.000 0.00 0.00 34.23 3.46
8697 11252 0.179067 TGTGGACGTGGTGTTCCTTC 60.179 55.000 0.00 0.00 34.23 3.46
8698 11253 0.253610 TTGTGGACGTGGTGTTCCTT 59.746 50.000 0.00 0.00 34.23 3.36
8699 11254 0.463116 GTTGTGGACGTGGTGTTCCT 60.463 55.000 0.00 0.00 34.23 3.36
8700 11255 0.463116 AGTTGTGGACGTGGTGTTCC 60.463 55.000 0.00 0.00 0.00 3.62
8701 11256 0.655733 CAGTTGTGGACGTGGTGTTC 59.344 55.000 0.00 0.00 0.00 3.18
8702 11257 2.775351 CAGTTGTGGACGTGGTGTT 58.225 52.632 0.00 0.00 0.00 3.32
8703 11258 1.618876 TCCAGTTGTGGACGTGGTGT 61.619 55.000 0.00 0.00 46.77 4.16
8704 11259 1.145156 TCCAGTTGTGGACGTGGTG 59.855 57.895 0.00 0.00 46.77 4.17
8705 11260 3.636820 TCCAGTTGTGGACGTGGT 58.363 55.556 0.00 0.00 46.77 4.16
8712 11267 2.203139 TGGCACGTCCAGTTGTGG 60.203 61.111 3.02 0.00 46.63 4.17
8719 11274 0.605319 GTGATTCCTTGGCACGTCCA 60.605 55.000 3.02 3.02 44.85 4.02
8720 11275 0.321653 AGTGATTCCTTGGCACGTCC 60.322 55.000 0.00 0.00 37.60 4.79
8721 11276 0.798776 CAGTGATTCCTTGGCACGTC 59.201 55.000 0.00 0.00 37.60 4.34
8722 11277 0.396435 TCAGTGATTCCTTGGCACGT 59.604 50.000 0.00 0.00 37.60 4.49
8723 11278 1.667724 GATCAGTGATTCCTTGGCACG 59.332 52.381 7.16 0.00 37.60 5.34
8724 11279 2.715046 TGATCAGTGATTCCTTGGCAC 58.285 47.619 7.16 0.00 0.00 5.01
8725 11280 3.349927 CTTGATCAGTGATTCCTTGGCA 58.650 45.455 7.16 0.00 0.00 4.92
8726 11281 2.686915 CCTTGATCAGTGATTCCTTGGC 59.313 50.000 7.16 0.00 0.00 4.52
8727 11282 3.285484 CCCTTGATCAGTGATTCCTTGG 58.715 50.000 7.16 5.95 0.00 3.61
8728 11283 3.285484 CCCCTTGATCAGTGATTCCTTG 58.715 50.000 7.16 0.00 0.00 3.61
8729 11284 2.243221 CCCCCTTGATCAGTGATTCCTT 59.757 50.000 7.16 0.00 0.00 3.36
8730 11285 1.849039 CCCCCTTGATCAGTGATTCCT 59.151 52.381 7.16 0.00 0.00 3.36
8731 11286 1.752084 GCCCCCTTGATCAGTGATTCC 60.752 57.143 7.16 0.00 0.00 3.01
8732 11287 1.685148 GCCCCCTTGATCAGTGATTC 58.315 55.000 7.16 1.61 0.00 2.52
8733 11288 0.107017 CGCCCCCTTGATCAGTGATT 60.107 55.000 7.16 0.00 0.00 2.57
8734 11289 1.528824 CGCCCCCTTGATCAGTGAT 59.471 57.895 4.98 4.98 0.00 3.06
8735 11290 2.669133 CCGCCCCCTTGATCAGTGA 61.669 63.158 0.00 0.00 0.00 3.41
8736 11291 1.987807 ATCCGCCCCCTTGATCAGTG 61.988 60.000 0.00 0.00 0.00 3.66
8737 11292 1.281925 AATCCGCCCCCTTGATCAGT 61.282 55.000 0.00 0.00 0.00 3.41
8738 11293 0.536006 GAATCCGCCCCCTTGATCAG 60.536 60.000 0.00 0.00 0.00 2.90
8739 11294 1.278302 TGAATCCGCCCCCTTGATCA 61.278 55.000 0.00 0.00 0.00 2.92
8740 11295 0.536006 CTGAATCCGCCCCCTTGATC 60.536 60.000 0.00 0.00 0.00 2.92
8741 11296 1.281925 ACTGAATCCGCCCCCTTGAT 61.282 55.000 0.00 0.00 0.00 2.57
8742 11297 0.619255 TACTGAATCCGCCCCCTTGA 60.619 55.000 0.00 0.00 0.00 3.02
8743 11298 0.463833 GTACTGAATCCGCCCCCTTG 60.464 60.000 0.00 0.00 0.00 3.61
8744 11299 1.632965 GGTACTGAATCCGCCCCCTT 61.633 60.000 0.00 0.00 0.00 3.95
8745 11300 2.070650 GGTACTGAATCCGCCCCCT 61.071 63.158 0.00 0.00 0.00 4.79
8746 11301 2.070650 AGGTACTGAATCCGCCCCC 61.071 63.158 0.00 0.00 37.18 5.40
8747 11302 3.643398 AGGTACTGAATCCGCCCC 58.357 61.111 0.00 0.00 37.18 5.80
8758 11313 2.432510 GCATTGGACTCTAGCAGGTACT 59.567 50.000 0.00 0.00 43.88 2.73
8759 11314 2.432510 AGCATTGGACTCTAGCAGGTAC 59.567 50.000 0.00 0.00 0.00 3.34
8760 11315 2.752030 AGCATTGGACTCTAGCAGGTA 58.248 47.619 0.00 0.00 0.00 3.08
8761 11316 1.577736 AGCATTGGACTCTAGCAGGT 58.422 50.000 0.00 0.00 0.00 4.00
8762 11317 2.681848 CAAAGCATTGGACTCTAGCAGG 59.318 50.000 0.00 0.00 32.69 4.85
8765 11320 4.006319 ACTTCAAAGCATTGGACTCTAGC 58.994 43.478 1.24 0.00 37.15 3.42
8772 11327 6.061441 TCTGTTAAGACTTCAAAGCATTGGA 58.939 36.000 1.24 0.00 37.15 3.53
8811 11366 2.537143 GAGACCTTGGGTAGACCTTCA 58.463 52.381 0.00 0.00 41.11 3.02
8855 11411 5.629079 AAAGGTTTGAAGATTTAGCTCCG 57.371 39.130 0.00 0.00 0.00 4.63
8857 11413 7.652727 ACTGAAAAGGTTTGAAGATTTAGCTC 58.347 34.615 0.00 0.00 0.00 4.09
8870 11426 5.591472 AGGCTAAAACGTACTGAAAAGGTTT 59.409 36.000 0.00 0.00 36.72 3.27
8897 11453 1.300465 CTCGTCCATGCATCCTCCG 60.300 63.158 0.00 0.00 0.00 4.63
8956 11512 2.737376 GGTCGACGCCGCTTCTTT 60.737 61.111 9.92 0.00 35.37 2.52
8985 11541 3.353836 CACGCCCGTGGAAAGTGG 61.354 66.667 12.66 0.00 42.00 4.00
9024 11580 1.501169 TCGTGTCTCGACTCAACGTA 58.499 50.000 0.00 0.00 44.01 3.57
9039 11595 2.728383 GTGTCCCGTCGTGTCGTG 60.728 66.667 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.