Multiple sequence alignment - TraesCS5B01G246900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G246900 chr5B 100.000 4889 0 0 1 4889 428964365 428959477 0.000000e+00 9029.0
1 TraesCS5B01G246900 chr5B 96.578 263 8 1 257 519 418810216 418809955 7.520000e-118 435.0
2 TraesCS5B01G246900 chr5B 95.255 274 11 2 249 521 659547708 659547980 2.700000e-117 433.0
3 TraesCS5B01G246900 chr5B 96.198 263 9 1 257 519 455761691 455761952 3.500000e-116 429.0
4 TraesCS5B01G246900 chr5B 95.522 268 11 1 252 519 517204436 517204702 1.260000e-115 427.0
5 TraesCS5B01G246900 chr5D 90.126 1661 68 33 594 2189 362665408 362663779 0.000000e+00 2071.0
6 TraesCS5B01G246900 chr5D 95.370 1080 46 4 3209 4285 362662879 362661801 0.000000e+00 1714.0
7 TraesCS5B01G246900 chr5D 85.125 800 52 18 2215 2970 362663809 362663033 0.000000e+00 756.0
8 TraesCS5B01G246900 chr5D 87.374 198 19 5 4284 4478 362661760 362661566 6.370000e-54 222.0
9 TraesCS5B01G246900 chr5D 95.652 138 6 0 116 253 362665606 362665469 6.370000e-54 222.0
10 TraesCS5B01G246900 chr5D 82.803 157 14 9 4326 4472 377861934 377861781 1.430000e-25 128.0
11 TraesCS5B01G246900 chr5D 90.526 95 8 1 1 94 409020613 409020707 1.850000e-24 124.0
12 TraesCS5B01G246900 chr5D 89.474 57 6 0 1486 1542 393801776 393801720 6.790000e-09 73.1
13 TraesCS5B01G246900 chr5A 89.868 1520 74 29 523 2010 463766538 463765067 0.000000e+00 1881.0
14 TraesCS5B01G246900 chr5A 96.125 1058 32 5 3141 4189 463763518 463762461 0.000000e+00 1718.0
15 TraesCS5B01G246900 chr5A 88.671 662 34 15 2450 3086 463764152 463763507 0.000000e+00 769.0
16 TraesCS5B01G246900 chr5A 90.888 428 27 9 4284 4706 463762339 463761919 9.190000e-157 564.0
17 TraesCS5B01G246900 chr5A 86.636 217 21 5 2215 2429 463764913 463764703 2.940000e-57 233.0
18 TraesCS5B01G246900 chr5A 87.500 152 16 3 4733 4882 463759463 463759313 6.510000e-39 172.0
19 TraesCS5B01G246900 chr5A 92.105 114 8 1 116 228 463766667 463766554 5.070000e-35 159.0
20 TraesCS5B01G246900 chr5A 90.476 42 3 1 92 133 437291053 437291093 2.000000e-03 54.7
21 TraesCS5B01G246900 chr6B 96.212 264 9 1 256 519 563484027 563484289 9.720000e-117 431.0
22 TraesCS5B01G246900 chr4B 95.238 273 11 2 248 520 110418858 110419128 9.720000e-117 431.0
23 TraesCS5B01G246900 chr4B 96.198 263 9 1 257 519 382819518 382819779 3.500000e-116 429.0
24 TraesCS5B01G246900 chr4B 100.000 29 0 0 1193 1221 484105788 484105760 2.000000e-03 54.7
25 TraesCS5B01G246900 chr3A 95.865 266 10 1 254 519 533067835 533068099 3.500000e-116 429.0
26 TraesCS5B01G246900 chr3A 94.203 276 14 2 257 531 169857234 169856960 2.100000e-113 420.0
27 TraesCS5B01G246900 chr3A 100.000 32 0 0 92 123 488725056 488725025 5.280000e-05 60.2
28 TraesCS5B01G246900 chr2B 98.889 90 1 0 4 93 205478347 205478258 1.410000e-35 161.0
29 TraesCS5B01G246900 chr2B 98.889 90 1 0 4 93 205529492 205529403 1.410000e-35 161.0
30 TraesCS5B01G246900 chr2B 84.426 122 11 7 6 121 134374652 134374771 4.000000e-21 113.0
31 TraesCS5B01G246900 chr2B 100.000 31 0 0 92 122 496552051 496552081 1.900000e-04 58.4
32 TraesCS5B01G246900 chr2B 94.286 35 2 0 1190 1224 531053210 531053244 2.000000e-03 54.7
33 TraesCS5B01G246900 chr6A 92.553 94 7 0 1 94 67368882 67368975 8.540000e-28 135.0
34 TraesCS5B01G246900 chr7B 91.667 96 6 2 1 94 644301172 644301077 1.100000e-26 132.0
35 TraesCS5B01G246900 chr7B 76.667 210 42 7 1350 1556 578438823 578439028 5.170000e-20 110.0
36 TraesCS5B01G246900 chr7B 83.478 115 15 4 4326 4439 556331179 556331068 2.410000e-18 104.0
37 TraesCS5B01G246900 chr7B 77.857 140 23 8 1092 1227 503496261 503496396 4.060000e-11 80.5
38 TraesCS5B01G246900 chr7B 97.143 35 0 1 92 125 694259867 694259901 1.900000e-04 58.4
39 TraesCS5B01G246900 chrUn 91.489 94 7 1 1 93 74678124 74678031 1.430000e-25 128.0
40 TraesCS5B01G246900 chr7A 87.387 111 13 1 1 110 97407280 97407390 5.140000e-25 126.0
41 TraesCS5B01G246900 chr7A 76.303 211 43 7 1350 1557 617385975 617385769 6.690000e-19 106.0
42 TraesCS5B01G246900 chr7A 100.000 31 0 0 92 122 78662696 78662666 1.900000e-04 58.4
43 TraesCS5B01G246900 chr7A 97.059 34 1 0 89 122 94833935 94833968 1.900000e-04 58.4
44 TraesCS5B01G246900 chr1A 91.398 93 7 1 1 92 297875960 297876052 5.140000e-25 126.0
45 TraesCS5B01G246900 chr1A 78.286 175 32 6 1347 1518 107485372 107485201 1.860000e-19 108.0
46 TraesCS5B01G246900 chr1A 87.209 86 9 2 1456 1540 60539630 60539714 4.030000e-16 97.1
47 TraesCS5B01G246900 chr1A 79.279 111 14 8 1456 1561 377450973 377450867 8.780000e-08 69.4
48 TraesCS5B01G246900 chr1A 94.737 38 2 0 89 126 505687822 505687859 5.280000e-05 60.2
49 TraesCS5B01G246900 chr7D 76.667 210 42 7 1350 1556 535967326 535967531 5.170000e-20 110.0
50 TraesCS5B01G246900 chr1D 78.698 169 30 6 1347 1512 104543891 104544056 1.860000e-19 108.0
51 TraesCS5B01G246900 chr1D 75.472 212 43 9 1350 1557 467611814 467611608 1.450000e-15 95.3
52 TraesCS5B01G246900 chr1D 78.505 107 19 4 1450 1554 81726319 81726423 3.160000e-07 67.6
53 TraesCS5B01G246900 chr1D 84.722 72 5 5 1486 1554 302879211 302879143 3.160000e-07 67.6
54 TraesCS5B01G246900 chr4D 78.035 173 29 9 1350 1518 394379105 394378938 3.110000e-17 100.0
55 TraesCS5B01G246900 chr4D 75.691 181 36 7 1354 1530 394361889 394362065 3.140000e-12 84.2
56 TraesCS5B01G246900 chr4D 100.000 32 0 0 1190 1221 394379219 394379188 5.280000e-05 60.2
57 TraesCS5B01G246900 chr4D 100.000 28 0 0 1190 1217 81666253 81666226 9.000000e-03 52.8
58 TraesCS5B01G246900 chr1B 76.355 203 39 9 1350 1548 162006012 162005815 3.110000e-17 100.0
59 TraesCS5B01G246900 chr4A 79.381 97 16 4 1130 1224 75843218 75843124 1.140000e-06 65.8
60 TraesCS5B01G246900 chr6D 100.000 30 0 0 1486 1515 25804591 25804562 6.840000e-04 56.5
61 TraesCS5B01G246900 chr2D 94.286 35 2 0 1190 1224 450918303 450918337 2.000000e-03 54.7
62 TraesCS5B01G246900 chr2A 94.286 35 2 0 1190 1224 598642399 598642365 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G246900 chr5B 428959477 428964365 4888 True 9029.000000 9029 100.000000 1 4889 1 chr5B.!!$R2 4888
1 TraesCS5B01G246900 chr5D 362661566 362665606 4040 True 997.000000 2071 90.729400 116 4478 5 chr5D.!!$R3 4362
2 TraesCS5B01G246900 chr5A 463759313 463766667 7354 True 785.142857 1881 90.256143 116 4882 7 chr5A.!!$R1 4766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.034767 TCACGGACGGAGGAGTATGT 60.035 55.0 0.0 0.0 0.00 2.29 F
151 153 0.382636 CGTCCACGTCGTTTTTCAGC 60.383 55.0 0.0 0.0 34.11 4.26 F
153 155 0.528033 TCCACGTCGTTTTTCAGCGA 60.528 50.0 0.0 0.0 34.54 4.93 F
157 159 0.575390 CGTCGTTTTTCAGCGAGTGT 59.425 50.0 0.0 0.0 37.82 3.55 F
552 554 0.918983 AAGATCATTCCAGCCCCGAA 59.081 50.0 0.0 0.0 0.00 4.30 F
2032 2115 0.518636 CCTGCACATCCACTTCGTTG 59.481 55.0 0.0 0.0 0.00 4.10 F
2866 3534 0.179034 GGTTCAGGCCATGGAGCTAG 60.179 60.0 18.4 0.0 31.68 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1239 1270 0.304705 GGATCGATCGCGCATGTTTT 59.695 50.0 18.81 0.0 37.46 2.43 R
1297 1329 0.523966 GACCTGAGACTGAGACCACG 59.476 60.0 0.00 0.0 0.00 4.94 R
1343 1375 0.664761 CGCATCCCTGGCACAATTAG 59.335 55.0 0.00 0.0 38.70 1.73 R
1801 1842 0.902531 CGCTCAGTTTCTTCCCCCTA 59.097 55.0 0.00 0.0 0.00 3.53 R
2222 2323 0.036164 AACATGCTGCCTACGAACCA 59.964 50.0 0.00 0.0 0.00 3.67 R
3654 4357 0.966920 TCTGGTCGGAGTTCAGGAAC 59.033 55.0 4.00 4.0 41.45 3.62 R
4279 4987 0.034574 TGACATTGGGCCATACGCTT 60.035 50.0 7.26 0.0 37.74 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 8.785329 AGTTGGTCAAAATTTTAAAGCTTTGA 57.215 26.923 22.02 11.08 35.88 2.69
52 53 8.207521 TCAAAATTTTAAAGCTTTGACTTGGG 57.792 30.769 22.02 5.50 33.90 4.12
53 54 8.043710 TCAAAATTTTAAAGCTTTGACTTGGGA 58.956 29.630 22.02 7.65 33.90 4.37
54 55 7.786178 AAATTTTAAAGCTTTGACTTGGGAC 57.214 32.000 22.02 0.00 0.00 4.46
55 56 5.923733 TTTTAAAGCTTTGACTTGGGACA 57.076 34.783 22.02 0.00 0.00 4.02
71 72 4.964593 TGGGACAAAAGGTAGAAGTACAC 58.035 43.478 0.00 0.00 31.92 2.90
72 73 4.657039 TGGGACAAAAGGTAGAAGTACACT 59.343 41.667 0.00 0.00 31.92 3.55
73 74 5.131475 TGGGACAAAAGGTAGAAGTACACTT 59.869 40.000 0.00 0.00 34.84 3.16
74 75 6.327104 TGGGACAAAAGGTAGAAGTACACTTA 59.673 38.462 0.00 0.00 32.71 2.24
75 76 7.016858 TGGGACAAAAGGTAGAAGTACACTTAT 59.983 37.037 0.00 0.00 32.71 1.73
76 77 7.881751 GGGACAAAAGGTAGAAGTACACTTATT 59.118 37.037 0.00 0.00 36.11 1.40
77 78 8.933807 GGACAAAAGGTAGAAGTACACTTATTC 58.066 37.037 0.00 0.00 36.11 1.75
78 79 9.485206 GACAAAAGGTAGAAGTACACTTATTCA 57.515 33.333 0.00 0.00 36.11 2.57
79 80 9.269453 ACAAAAGGTAGAAGTACACTTATTCAC 57.731 33.333 0.00 0.00 36.11 3.18
80 81 8.433126 CAAAAGGTAGAAGTACACTTATTCACG 58.567 37.037 0.00 0.00 36.11 4.35
81 82 6.205101 AGGTAGAAGTACACTTATTCACGG 57.795 41.667 0.00 0.00 36.11 4.94
82 83 5.948162 AGGTAGAAGTACACTTATTCACGGA 59.052 40.000 0.00 0.00 36.11 4.69
83 84 6.032717 GGTAGAAGTACACTTATTCACGGAC 58.967 44.000 0.00 0.00 36.11 4.79
84 85 4.730657 AGAAGTACACTTATTCACGGACG 58.269 43.478 0.00 0.00 36.11 4.79
85 86 3.498927 AGTACACTTATTCACGGACGG 57.501 47.619 0.00 0.00 0.00 4.79
86 87 3.084039 AGTACACTTATTCACGGACGGA 58.916 45.455 0.00 0.00 0.00 4.69
87 88 2.649331 ACACTTATTCACGGACGGAG 57.351 50.000 0.00 0.00 0.00 4.63
88 89 1.203994 ACACTTATTCACGGACGGAGG 59.796 52.381 0.00 0.00 0.00 4.30
89 90 1.475280 CACTTATTCACGGACGGAGGA 59.525 52.381 0.00 0.00 0.00 3.71
90 91 1.749634 ACTTATTCACGGACGGAGGAG 59.250 52.381 0.00 0.00 0.00 3.69
91 92 1.749634 CTTATTCACGGACGGAGGAGT 59.250 52.381 0.00 0.00 0.00 3.85
92 93 2.715749 TATTCACGGACGGAGGAGTA 57.284 50.000 0.00 0.00 0.00 2.59
93 94 2.068834 ATTCACGGACGGAGGAGTAT 57.931 50.000 0.00 0.00 0.00 2.12
94 95 1.100510 TTCACGGACGGAGGAGTATG 58.899 55.000 0.00 0.00 0.00 2.39
95 96 0.034767 TCACGGACGGAGGAGTATGT 60.035 55.000 0.00 0.00 0.00 2.29
96 97 0.815734 CACGGACGGAGGAGTATGTT 59.184 55.000 0.00 0.00 0.00 2.71
97 98 1.101331 ACGGACGGAGGAGTATGTTC 58.899 55.000 0.00 0.00 0.00 3.18
98 99 1.340795 ACGGACGGAGGAGTATGTTCT 60.341 52.381 0.00 0.00 0.00 3.01
99 100 1.749634 CGGACGGAGGAGTATGTTCTT 59.250 52.381 0.00 0.00 0.00 2.52
100 101 2.479730 CGGACGGAGGAGTATGTTCTTG 60.480 54.545 0.00 0.00 0.00 3.02
101 102 2.541556 GACGGAGGAGTATGTTCTTGC 58.458 52.381 0.00 0.00 0.00 4.01
102 103 1.207329 ACGGAGGAGTATGTTCTTGCC 59.793 52.381 0.00 0.00 0.00 4.52
103 104 1.473434 CGGAGGAGTATGTTCTTGCCC 60.473 57.143 0.00 0.00 0.00 5.36
104 105 1.559682 GGAGGAGTATGTTCTTGCCCA 59.440 52.381 0.00 0.00 0.00 5.36
105 106 2.173569 GGAGGAGTATGTTCTTGCCCAT 59.826 50.000 0.00 0.00 0.00 4.00
106 107 3.372025 GGAGGAGTATGTTCTTGCCCATT 60.372 47.826 0.00 0.00 0.00 3.16
107 108 3.624777 AGGAGTATGTTCTTGCCCATTG 58.375 45.455 0.00 0.00 0.00 2.82
108 109 3.010584 AGGAGTATGTTCTTGCCCATTGT 59.989 43.478 0.00 0.00 0.00 2.71
109 110 3.129287 GGAGTATGTTCTTGCCCATTGTG 59.871 47.826 0.00 0.00 0.00 3.33
110 111 4.009675 GAGTATGTTCTTGCCCATTGTGA 58.990 43.478 0.00 0.00 0.00 3.58
111 112 3.758554 AGTATGTTCTTGCCCATTGTGAC 59.241 43.478 0.00 0.00 0.00 3.67
112 113 1.327303 TGTTCTTGCCCATTGTGACC 58.673 50.000 0.00 0.00 0.00 4.02
113 114 1.327303 GTTCTTGCCCATTGTGACCA 58.673 50.000 0.00 0.00 0.00 4.02
114 115 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
151 153 0.382636 CGTCCACGTCGTTTTTCAGC 60.383 55.000 0.00 0.00 34.11 4.26
153 155 0.528033 TCCACGTCGTTTTTCAGCGA 60.528 50.000 0.00 0.00 34.54 4.93
157 159 0.575390 CGTCGTTTTTCAGCGAGTGT 59.425 50.000 0.00 0.00 37.82 3.55
161 163 1.657538 CGTTTTTCAGCGAGTGTGCTC 60.658 52.381 0.00 0.00 45.23 4.26
184 186 5.104527 TCAGTTTTCTTCCTCCTTGACTTCA 60.105 40.000 0.00 0.00 0.00 3.02
253 255 2.900046 CGCAAAAACACGAGGATAAACG 59.100 45.455 0.00 0.00 0.00 3.60
255 257 4.376210 CGCAAAAACACGAGGATAAACGTA 60.376 41.667 0.00 0.00 40.76 3.57
259 261 6.934561 AAAACACGAGGATAAACGTAGTAC 57.065 37.500 0.00 0.00 45.00 2.73
260 262 5.886960 AACACGAGGATAAACGTAGTACT 57.113 39.130 0.00 0.00 45.00 2.73
261 263 5.476752 ACACGAGGATAAACGTAGTACTC 57.523 43.478 0.00 0.00 45.00 2.59
263 265 3.879892 ACGAGGATAAACGTAGTACTCCC 59.120 47.826 0.00 0.00 45.00 4.30
264 266 4.133078 CGAGGATAAACGTAGTACTCCCT 58.867 47.826 0.00 0.00 45.00 4.20
265 267 4.213059 CGAGGATAAACGTAGTACTCCCTC 59.787 50.000 0.00 0.00 45.00 4.30
266 268 4.468713 AGGATAAACGTAGTACTCCCTCC 58.531 47.826 0.00 0.00 45.00 4.30
267 269 3.251972 GGATAAACGTAGTACTCCCTCCG 59.748 52.174 0.00 0.00 45.00 4.63
268 270 2.496899 AAACGTAGTACTCCCTCCGA 57.503 50.000 0.00 0.00 45.00 4.55
269 271 2.725221 AACGTAGTACTCCCTCCGAT 57.275 50.000 0.00 0.00 45.00 4.18
270 272 2.252976 ACGTAGTACTCCCTCCGATC 57.747 55.000 0.00 0.00 41.94 3.69
271 273 1.202746 ACGTAGTACTCCCTCCGATCC 60.203 57.143 0.00 0.00 41.94 3.36
272 274 1.072015 CGTAGTACTCCCTCCGATCCT 59.928 57.143 0.00 0.00 0.00 3.24
273 275 2.486907 CGTAGTACTCCCTCCGATCCTT 60.487 54.545 0.00 0.00 0.00 3.36
274 276 2.850695 AGTACTCCCTCCGATCCTTT 57.149 50.000 0.00 0.00 0.00 3.11
275 277 3.117552 AGTACTCCCTCCGATCCTTTT 57.882 47.619 0.00 0.00 0.00 2.27
276 278 3.451890 AGTACTCCCTCCGATCCTTTTT 58.548 45.455 0.00 0.00 0.00 1.94
277 279 4.617593 AGTACTCCCTCCGATCCTTTTTA 58.382 43.478 0.00 0.00 0.00 1.52
278 280 3.908643 ACTCCCTCCGATCCTTTTTAC 57.091 47.619 0.00 0.00 0.00 2.01
279 281 3.451890 ACTCCCTCCGATCCTTTTTACT 58.548 45.455 0.00 0.00 0.00 2.24
280 282 3.451540 ACTCCCTCCGATCCTTTTTACTC 59.548 47.826 0.00 0.00 0.00 2.59
281 283 3.707102 CTCCCTCCGATCCTTTTTACTCT 59.293 47.826 0.00 0.00 0.00 3.24
282 284 3.451178 TCCCTCCGATCCTTTTTACTCTG 59.549 47.826 0.00 0.00 0.00 3.35
283 285 3.198872 CCTCCGATCCTTTTTACTCTGC 58.801 50.000 0.00 0.00 0.00 4.26
284 286 3.369471 CCTCCGATCCTTTTTACTCTGCA 60.369 47.826 0.00 0.00 0.00 4.41
285 287 4.446371 CTCCGATCCTTTTTACTCTGCAT 58.554 43.478 0.00 0.00 0.00 3.96
286 288 5.453339 CCTCCGATCCTTTTTACTCTGCATA 60.453 44.000 0.00 0.00 0.00 3.14
287 289 6.174720 TCCGATCCTTTTTACTCTGCATAT 57.825 37.500 0.00 0.00 0.00 1.78
288 290 6.591935 TCCGATCCTTTTTACTCTGCATATT 58.408 36.000 0.00 0.00 0.00 1.28
289 291 7.732025 TCCGATCCTTTTTACTCTGCATATTA 58.268 34.615 0.00 0.00 0.00 0.98
290 292 7.872993 TCCGATCCTTTTTACTCTGCATATTAG 59.127 37.037 0.00 0.00 0.00 1.73
291 293 7.118390 CCGATCCTTTTTACTCTGCATATTAGG 59.882 40.741 0.00 0.00 0.00 2.69
292 294 7.657761 CGATCCTTTTTACTCTGCATATTAGGT 59.342 37.037 0.00 0.00 0.00 3.08
293 295 9.343539 GATCCTTTTTACTCTGCATATTAGGTT 57.656 33.333 0.00 0.00 0.00 3.50
294 296 9.700831 ATCCTTTTTACTCTGCATATTAGGTTT 57.299 29.630 0.00 0.00 0.00 3.27
295 297 8.956426 TCCTTTTTACTCTGCATATTAGGTTTG 58.044 33.333 0.00 0.00 0.00 2.93
296 298 8.739972 CCTTTTTACTCTGCATATTAGGTTTGT 58.260 33.333 0.00 0.00 0.00 2.83
297 299 9.774742 CTTTTTACTCTGCATATTAGGTTTGTC 57.225 33.333 0.00 0.00 0.00 3.18
298 300 9.515226 TTTTTACTCTGCATATTAGGTTTGTCT 57.485 29.630 0.00 0.00 0.00 3.41
299 301 8.492673 TTTACTCTGCATATTAGGTTTGTCTG 57.507 34.615 0.00 0.00 0.00 3.51
300 302 6.299805 ACTCTGCATATTAGGTTTGTCTGA 57.700 37.500 0.00 0.00 0.00 3.27
301 303 6.711277 ACTCTGCATATTAGGTTTGTCTGAA 58.289 36.000 0.00 0.00 0.00 3.02
302 304 6.820656 ACTCTGCATATTAGGTTTGTCTGAAG 59.179 38.462 0.00 0.00 0.00 3.02
303 305 6.711277 TCTGCATATTAGGTTTGTCTGAAGT 58.289 36.000 0.00 0.00 0.00 3.01
304 306 6.818644 TCTGCATATTAGGTTTGTCTGAAGTC 59.181 38.462 0.00 0.00 0.00 3.01
305 307 6.472016 TGCATATTAGGTTTGTCTGAAGTCA 58.528 36.000 0.00 0.00 0.00 3.41
306 308 6.939730 TGCATATTAGGTTTGTCTGAAGTCAA 59.060 34.615 0.00 0.00 0.00 3.18
307 309 7.611467 TGCATATTAGGTTTGTCTGAAGTCAAT 59.389 33.333 0.00 0.00 0.00 2.57
308 310 8.125448 GCATATTAGGTTTGTCTGAAGTCAATC 58.875 37.037 0.00 0.00 0.00 2.67
309 311 9.388506 CATATTAGGTTTGTCTGAAGTCAATCT 57.611 33.333 0.00 0.00 0.00 2.40
310 312 7.913674 ATTAGGTTTGTCTGAAGTCAATCTC 57.086 36.000 0.00 0.00 0.00 2.75
311 313 5.296151 AGGTTTGTCTGAAGTCAATCTCA 57.704 39.130 0.00 0.00 0.00 3.27
312 314 5.874093 AGGTTTGTCTGAAGTCAATCTCAT 58.126 37.500 0.00 0.00 0.00 2.90
313 315 5.936956 AGGTTTGTCTGAAGTCAATCTCATC 59.063 40.000 0.00 0.00 0.00 2.92
314 316 5.123027 GGTTTGTCTGAAGTCAATCTCATCC 59.877 44.000 0.00 0.00 0.00 3.51
315 317 5.488262 TTGTCTGAAGTCAATCTCATCCA 57.512 39.130 0.00 0.00 0.00 3.41
316 318 5.488262 TGTCTGAAGTCAATCTCATCCAA 57.512 39.130 0.00 0.00 0.00 3.53
317 319 5.240891 TGTCTGAAGTCAATCTCATCCAAC 58.759 41.667 0.00 0.00 0.00 3.77
318 320 5.012458 TGTCTGAAGTCAATCTCATCCAACT 59.988 40.000 0.00 0.00 0.00 3.16
319 321 5.936956 GTCTGAAGTCAATCTCATCCAACTT 59.063 40.000 0.00 0.00 0.00 2.66
320 322 6.429385 GTCTGAAGTCAATCTCATCCAACTTT 59.571 38.462 0.00 0.00 0.00 2.66
321 323 6.429078 TCTGAAGTCAATCTCATCCAACTTTG 59.571 38.462 0.00 0.00 0.00 2.77
322 324 6.298361 TGAAGTCAATCTCATCCAACTTTGA 58.702 36.000 0.00 0.00 0.00 2.69
323 325 6.205464 TGAAGTCAATCTCATCCAACTTTGAC 59.795 38.462 5.67 5.67 41.88 3.18
324 326 5.006386 AGTCAATCTCATCCAACTTTGACC 58.994 41.667 9.31 0.00 42.29 4.02
325 327 4.761739 GTCAATCTCATCCAACTTTGACCA 59.238 41.667 0.00 0.00 37.86 4.02
326 328 5.241506 GTCAATCTCATCCAACTTTGACCAA 59.758 40.000 0.00 0.00 37.86 3.67
327 329 5.474532 TCAATCTCATCCAACTTTGACCAAG 59.525 40.000 0.00 0.00 38.64 3.61
367 369 9.679661 ATTATAGACATTCACATAACAACACCA 57.320 29.630 0.00 0.00 0.00 4.17
368 370 7.994425 ATAGACATTCACATAACAACACCAA 57.006 32.000 0.00 0.00 0.00 3.67
369 371 6.899393 AGACATTCACATAACAACACCAAT 57.101 33.333 0.00 0.00 0.00 3.16
370 372 7.994425 AGACATTCACATAACAACACCAATA 57.006 32.000 0.00 0.00 0.00 1.90
371 373 8.579850 AGACATTCACATAACAACACCAATAT 57.420 30.769 0.00 0.00 0.00 1.28
372 374 8.677300 AGACATTCACATAACAACACCAATATC 58.323 33.333 0.00 0.00 0.00 1.63
373 375 8.347004 ACATTCACATAACAACACCAATATCA 57.653 30.769 0.00 0.00 0.00 2.15
374 376 8.970020 ACATTCACATAACAACACCAATATCAT 58.030 29.630 0.00 0.00 0.00 2.45
375 377 9.806203 CATTCACATAACAACACCAATATCATT 57.194 29.630 0.00 0.00 0.00 2.57
378 380 9.898152 TCACATAACAACACCAATATCATTAGA 57.102 29.630 0.00 0.00 0.00 2.10
479 481 5.169836 ACTTAGCAAAGTTTGACTTTCGG 57.830 39.130 19.82 8.79 44.47 4.30
480 482 2.492019 AGCAAAGTTTGACTTTCGGC 57.508 45.000 19.82 5.65 44.47 5.54
481 483 1.748493 AGCAAAGTTTGACTTTCGGCA 59.252 42.857 19.82 0.00 44.47 5.69
482 484 2.165437 AGCAAAGTTTGACTTTCGGCAA 59.835 40.909 19.82 0.00 44.47 4.52
483 485 2.926838 GCAAAGTTTGACTTTCGGCAAA 59.073 40.909 19.82 0.00 44.47 3.68
484 486 3.369451 GCAAAGTTTGACTTTCGGCAAAA 59.631 39.130 19.82 0.00 44.47 2.44
485 487 4.033932 GCAAAGTTTGACTTTCGGCAAAAT 59.966 37.500 19.82 0.00 44.47 1.82
486 488 5.727249 CAAAGTTTGACTTTCGGCAAAATC 58.273 37.500 10.19 0.00 44.47 2.17
487 489 4.647424 AGTTTGACTTTCGGCAAAATCA 57.353 36.364 0.00 0.00 35.95 2.57
488 490 5.004922 AGTTTGACTTTCGGCAAAATCAA 57.995 34.783 0.00 3.41 35.95 2.57
489 491 5.600696 AGTTTGACTTTCGGCAAAATCAAT 58.399 33.333 6.97 0.00 35.95 2.57
490 492 5.463061 AGTTTGACTTTCGGCAAAATCAATG 59.537 36.000 6.97 0.00 35.95 2.82
491 493 4.582701 TGACTTTCGGCAAAATCAATGT 57.417 36.364 0.00 0.00 0.00 2.71
492 494 4.297510 TGACTTTCGGCAAAATCAATGTG 58.702 39.130 0.00 0.00 0.00 3.21
493 495 3.059166 ACTTTCGGCAAAATCAATGTGC 58.941 40.909 0.00 0.00 37.55 4.57
494 496 2.808523 TTCGGCAAAATCAATGTGCA 57.191 40.000 0.00 0.00 40.12 4.57
495 497 2.350899 TCGGCAAAATCAATGTGCAG 57.649 45.000 0.00 0.00 40.12 4.41
496 498 1.612950 TCGGCAAAATCAATGTGCAGT 59.387 42.857 0.00 0.00 40.12 4.40
497 499 1.722464 CGGCAAAATCAATGTGCAGTG 59.278 47.619 0.00 0.00 40.12 3.66
498 500 2.758009 GGCAAAATCAATGTGCAGTGT 58.242 42.857 0.00 0.00 40.12 3.55
499 501 3.611293 CGGCAAAATCAATGTGCAGTGTA 60.611 43.478 0.00 0.00 40.12 2.90
500 502 4.305769 GGCAAAATCAATGTGCAGTGTAA 58.694 39.130 0.00 0.00 40.12 2.41
501 503 4.749099 GGCAAAATCAATGTGCAGTGTAAA 59.251 37.500 0.00 0.00 40.12 2.01
502 504 5.236047 GGCAAAATCAATGTGCAGTGTAAAA 59.764 36.000 0.00 0.00 40.12 1.52
503 505 6.238320 GGCAAAATCAATGTGCAGTGTAAAAA 60.238 34.615 0.00 0.00 40.12 1.94
504 506 6.847289 GCAAAATCAATGTGCAGTGTAAAAAG 59.153 34.615 0.00 0.00 38.19 2.27
505 507 7.346695 CAAAATCAATGTGCAGTGTAAAAAGG 58.653 34.615 0.00 0.00 0.00 3.11
506 508 6.403866 AATCAATGTGCAGTGTAAAAAGGA 57.596 33.333 0.00 0.00 0.00 3.36
507 509 6.594788 ATCAATGTGCAGTGTAAAAAGGAT 57.405 33.333 0.00 0.00 0.00 3.24
508 510 6.012658 TCAATGTGCAGTGTAAAAAGGATC 57.987 37.500 0.00 0.00 0.00 3.36
509 511 5.534278 TCAATGTGCAGTGTAAAAAGGATCA 59.466 36.000 0.00 0.00 0.00 2.92
510 512 5.633830 ATGTGCAGTGTAAAAAGGATCAG 57.366 39.130 0.00 0.00 0.00 2.90
511 513 4.713553 TGTGCAGTGTAAAAAGGATCAGA 58.286 39.130 0.00 0.00 0.00 3.27
512 514 4.756642 TGTGCAGTGTAAAAAGGATCAGAG 59.243 41.667 0.00 0.00 0.00 3.35
513 515 4.154918 GTGCAGTGTAAAAAGGATCAGAGG 59.845 45.833 0.00 0.00 0.00 3.69
514 516 3.691609 GCAGTGTAAAAAGGATCAGAGGG 59.308 47.826 0.00 0.00 0.00 4.30
515 517 4.565652 GCAGTGTAAAAAGGATCAGAGGGA 60.566 45.833 0.00 0.00 0.00 4.20
516 518 5.181748 CAGTGTAAAAAGGATCAGAGGGAG 58.818 45.833 0.00 0.00 0.00 4.30
517 519 4.846940 AGTGTAAAAAGGATCAGAGGGAGT 59.153 41.667 0.00 0.00 0.00 3.85
518 520 6.023603 AGTGTAAAAAGGATCAGAGGGAGTA 58.976 40.000 0.00 0.00 0.00 2.59
519 521 6.674419 AGTGTAAAAAGGATCAGAGGGAGTAT 59.326 38.462 0.00 0.00 0.00 2.12
520 522 6.763610 GTGTAAAAAGGATCAGAGGGAGTATG 59.236 42.308 0.00 0.00 0.00 2.39
521 523 6.672218 TGTAAAAAGGATCAGAGGGAGTATGA 59.328 38.462 0.00 0.00 0.00 2.15
546 548 4.187694 ACGAGAAGAAAGATCATTCCAGC 58.812 43.478 7.05 0.00 0.00 4.85
552 554 0.918983 AAGATCATTCCAGCCCCGAA 59.081 50.000 0.00 0.00 0.00 4.30
601 603 2.758089 GGATGCAGAGGCGCACAAG 61.758 63.158 10.83 0.00 46.56 3.16
610 612 1.172812 AGGCGCACAAGGAAAAGTCC 61.173 55.000 10.83 0.00 45.35 3.85
682 685 1.300931 CGTGCCATCCTATCACCGG 60.301 63.158 0.00 0.00 0.00 5.28
691 694 1.073199 CTATCACCGGGCCCCAATC 59.927 63.158 18.66 0.00 0.00 2.67
692 695 2.411765 CTATCACCGGGCCCCAATCC 62.412 65.000 18.66 0.00 0.00 3.01
795 798 1.514553 GCACCTCACCTACCCGTAC 59.485 63.158 0.00 0.00 0.00 3.67
857 879 3.611057 CGCCTCCGCTTTCTATATAACGT 60.611 47.826 0.00 0.00 0.00 3.99
866 888 1.167851 CTATATAACGTCCGGCCGGA 58.832 55.000 42.66 42.66 42.90 5.14
971 998 4.465446 CCGCCCTCTCTCCCTCCA 62.465 72.222 0.00 0.00 0.00 3.86
1235 1266 3.268986 CGTGAGTCGTCTCTGCCT 58.731 61.111 10.95 0.00 40.98 4.75
1239 1270 2.085320 GTGAGTCGTCTCTGCCTTCTA 58.915 52.381 10.95 0.00 40.98 2.10
1336 1368 1.448540 CTGATCGGTTTCGGCTGCT 60.449 57.895 0.00 0.00 36.95 4.24
1343 1375 2.674357 TCGGTTTCGGCTGCTATTTTAC 59.326 45.455 0.00 0.00 36.95 2.01
1566 1598 1.153958 GTACGTACGCCGCCTTCTT 60.154 57.895 16.72 0.00 41.42 2.52
1572 1604 4.489771 CGCCGCCTTCTTCCCCAT 62.490 66.667 0.00 0.00 0.00 4.00
1707 1740 2.233676 GGGTTCCATTGTTCCATTCCAC 59.766 50.000 0.00 0.00 0.00 4.02
1780 1813 3.334583 TTTCGGTTCCAGAATCCAGAG 57.665 47.619 0.00 0.00 0.00 3.35
1781 1814 1.195115 TCGGTTCCAGAATCCAGAGG 58.805 55.000 0.00 0.00 0.00 3.69
1801 1842 2.233676 GGCCGGTCTTTCAAAATGGAAT 59.766 45.455 1.90 0.00 0.00 3.01
1864 1905 7.600752 TGCCTTAATTAATTTCCTTTTTGTCCG 59.399 33.333 5.91 0.00 0.00 4.79
1977 2032 3.833645 TCGTCGCAAGCCGCCTAT 61.834 61.111 0.00 0.00 37.30 2.57
2010 2065 3.036084 CTCGCACGCACCGTCTTT 61.036 61.111 0.00 0.00 38.32 2.52
2032 2115 0.518636 CCTGCACATCCACTTCGTTG 59.481 55.000 0.00 0.00 0.00 4.10
2047 2130 2.799017 TCGTTGGAAGCTCCTACACTA 58.201 47.619 13.78 1.18 41.39 2.74
2149 2250 4.314740 AAATAGCAACCAAGAAACGCAA 57.685 36.364 0.00 0.00 0.00 4.85
2165 2266 4.314740 ACGCAAAATTAGTTTCTGCCAA 57.685 36.364 10.15 0.00 32.57 4.52
2168 2269 5.234116 ACGCAAAATTAGTTTCTGCCAAAAG 59.766 36.000 10.15 2.72 32.57 2.27
2170 2271 6.238076 CGCAAAATTAGTTTCTGCCAAAAGTT 60.238 34.615 10.15 0.00 32.57 2.66
2171 2272 7.471721 GCAAAATTAGTTTCTGCCAAAAGTTT 58.528 30.769 6.61 0.00 31.28 2.66
2172 2273 7.429051 GCAAAATTAGTTTCTGCCAAAAGTTTG 59.571 33.333 0.00 0.00 37.90 2.93
2173 2274 8.450180 CAAAATTAGTTTCTGCCAAAAGTTTGT 58.550 29.630 3.26 0.00 36.45 2.83
2174 2275 9.660180 AAAATTAGTTTCTGCCAAAAGTTTGTA 57.340 25.926 3.26 0.00 36.45 2.41
2175 2276 8.871686 AATTAGTTTCTGCCAAAAGTTTGTAG 57.128 30.769 3.26 2.03 36.45 2.74
2176 2277 5.262588 AGTTTCTGCCAAAAGTTTGTAGG 57.737 39.130 3.26 0.00 36.45 3.18
2177 2278 3.726291 TTCTGCCAAAAGTTTGTAGGC 57.274 42.857 16.12 16.12 36.45 3.93
2178 2279 2.660572 TCTGCCAAAAGTTTGTAGGCA 58.339 42.857 21.43 21.43 36.45 4.75
2179 2280 2.622942 TCTGCCAAAAGTTTGTAGGCAG 59.377 45.455 31.51 31.51 44.75 4.85
2180 2281 1.068434 TGCCAAAAGTTTGTAGGCAGC 59.932 47.619 19.83 4.19 36.45 5.25
2181 2282 1.068434 GCCAAAAGTTTGTAGGCAGCA 59.932 47.619 17.41 0.00 36.45 4.41
2182 2283 2.289010 GCCAAAAGTTTGTAGGCAGCAT 60.289 45.455 17.41 0.00 36.45 3.79
2183 2284 3.319755 CCAAAAGTTTGTAGGCAGCATG 58.680 45.455 0.00 0.00 36.45 4.06
2184 2285 3.243839 CCAAAAGTTTGTAGGCAGCATGT 60.244 43.478 0.00 0.00 35.80 3.21
2185 2286 4.370917 CAAAAGTTTGTAGGCAGCATGTT 58.629 39.130 0.00 0.00 33.95 2.71
2186 2287 3.923017 AAGTTTGTAGGCAGCATGTTC 57.077 42.857 0.00 0.00 39.31 3.18
2187 2288 2.862541 AGTTTGTAGGCAGCATGTTCA 58.137 42.857 0.00 0.00 39.31 3.18
2188 2289 3.424703 AGTTTGTAGGCAGCATGTTCAT 58.575 40.909 0.00 0.00 39.31 2.57
2189 2290 3.828451 AGTTTGTAGGCAGCATGTTCATT 59.172 39.130 0.00 0.00 39.31 2.57
2190 2291 3.853831 TTGTAGGCAGCATGTTCATTG 57.146 42.857 0.00 0.00 39.31 2.82
2191 2292 2.794103 TGTAGGCAGCATGTTCATTGT 58.206 42.857 0.00 0.00 39.31 2.71
2192 2293 3.156293 TGTAGGCAGCATGTTCATTGTT 58.844 40.909 0.00 0.00 39.31 2.83
2193 2294 3.573538 TGTAGGCAGCATGTTCATTGTTT 59.426 39.130 0.00 0.00 39.31 2.83
2194 2295 3.756933 AGGCAGCATGTTCATTGTTTT 57.243 38.095 0.00 0.00 39.31 2.43
2195 2296 4.075963 AGGCAGCATGTTCATTGTTTTT 57.924 36.364 0.00 0.00 39.31 1.94
2196 2297 3.810941 AGGCAGCATGTTCATTGTTTTTG 59.189 39.130 0.00 0.00 39.31 2.44
2197 2298 3.058777 GGCAGCATGTTCATTGTTTTTGG 60.059 43.478 0.00 0.00 39.31 3.28
2198 2299 3.058777 GCAGCATGTTCATTGTTTTTGGG 60.059 43.478 0.00 0.00 39.31 4.12
2199 2300 4.378774 CAGCATGTTCATTGTTTTTGGGA 58.621 39.130 0.00 0.00 0.00 4.37
2200 2301 4.998672 CAGCATGTTCATTGTTTTTGGGAT 59.001 37.500 0.00 0.00 0.00 3.85
2201 2302 6.164876 CAGCATGTTCATTGTTTTTGGGATA 58.835 36.000 0.00 0.00 0.00 2.59
2202 2303 6.311935 CAGCATGTTCATTGTTTTTGGGATAG 59.688 38.462 0.00 0.00 0.00 2.08
2203 2304 5.063817 GCATGTTCATTGTTTTTGGGATAGC 59.936 40.000 0.00 0.00 0.00 2.97
2204 2305 6.400568 CATGTTCATTGTTTTTGGGATAGCT 58.599 36.000 0.00 0.00 0.00 3.32
2205 2306 6.418057 TGTTCATTGTTTTTGGGATAGCTT 57.582 33.333 0.00 0.00 0.00 3.74
2206 2307 7.531857 TGTTCATTGTTTTTGGGATAGCTTA 57.468 32.000 0.00 0.00 0.00 3.09
2207 2308 7.375053 TGTTCATTGTTTTTGGGATAGCTTAC 58.625 34.615 0.00 0.00 0.00 2.34
2208 2309 6.524101 TCATTGTTTTTGGGATAGCTTACC 57.476 37.500 0.00 0.00 0.00 2.85
2209 2310 6.013379 TCATTGTTTTTGGGATAGCTTACCA 58.987 36.000 10.30 5.58 0.00 3.25
2210 2311 6.667414 TCATTGTTTTTGGGATAGCTTACCAT 59.333 34.615 10.30 0.00 33.63 3.55
2211 2312 6.926630 TTGTTTTTGGGATAGCTTACCATT 57.073 33.333 10.30 0.00 33.63 3.16
2212 2313 6.524101 TGTTTTTGGGATAGCTTACCATTC 57.476 37.500 10.30 0.00 33.63 2.67
2213 2314 6.013379 TGTTTTTGGGATAGCTTACCATTCA 58.987 36.000 10.30 3.79 33.63 2.57
2214 2315 6.667414 TGTTTTTGGGATAGCTTACCATTCAT 59.333 34.615 10.30 0.00 33.63 2.57
2215 2316 6.713762 TTTTGGGATAGCTTACCATTCATG 57.286 37.500 10.30 0.00 33.63 3.07
2216 2317 3.754965 TGGGATAGCTTACCATTCATGC 58.245 45.455 10.30 0.00 0.00 4.06
2217 2318 3.084786 GGGATAGCTTACCATTCATGCC 58.915 50.000 10.30 0.00 0.00 4.40
2218 2319 2.744202 GGATAGCTTACCATTCATGCCG 59.256 50.000 0.00 0.00 0.00 5.69
2219 2320 3.557054 GGATAGCTTACCATTCATGCCGA 60.557 47.826 0.00 0.00 0.00 5.54
2220 2321 2.418368 AGCTTACCATTCATGCCGAA 57.582 45.000 0.00 0.00 38.22 4.30
2221 2322 2.722094 AGCTTACCATTCATGCCGAAA 58.278 42.857 0.00 0.00 37.12 3.46
2222 2323 3.290710 AGCTTACCATTCATGCCGAAAT 58.709 40.909 0.00 0.00 37.12 2.17
2223 2324 3.067180 AGCTTACCATTCATGCCGAAATG 59.933 43.478 0.00 0.00 37.12 2.32
2247 2348 3.605634 TCGTAGGCAGCATGTTAATGTT 58.394 40.909 0.00 0.00 39.31 2.71
2249 2350 3.623060 CGTAGGCAGCATGTTAATGTTCT 59.377 43.478 0.00 0.00 39.31 3.01
2280 2382 9.632807 TTAATGTTTTCTAAAATGGTGAATCGG 57.367 29.630 0.00 0.00 0.00 4.18
2384 2496 1.001974 CACACTGAACCAGAATCGGGA 59.998 52.381 6.40 0.00 35.18 5.14
2385 2497 1.276421 ACACTGAACCAGAATCGGGAG 59.724 52.381 6.40 0.00 35.18 4.30
2429 2541 2.439156 GTCCATCCTGCTGTGCCC 60.439 66.667 0.00 0.00 0.00 5.36
2462 3104 4.295119 GGCACACGACACCTCGGT 62.295 66.667 0.00 0.00 44.80 4.69
2559 3201 2.625314 GGTATAGTAACCCTGGACGTCC 59.375 54.545 28.17 28.17 33.02 4.79
2687 3345 0.962855 TGCCTCCTCTGTCTCTCACG 60.963 60.000 0.00 0.00 0.00 4.35
2729 3387 0.598680 AGACGATAATGCTGCCGCTC 60.599 55.000 0.70 0.00 36.97 5.03
2733 3391 0.533755 GATAATGCTGCCGCTCCTGT 60.534 55.000 0.70 0.00 36.97 4.00
2739 3397 1.524621 CTGCCGCTCCTGTAATGGG 60.525 63.158 0.00 0.00 0.00 4.00
2753 3411 5.989777 CCTGTAATGGGGATCGTTTTAGTAG 59.010 44.000 0.00 0.00 0.00 2.57
2761 3419 3.795639 GGATCGTTTTAGTAGTTCGCCTC 59.204 47.826 0.00 0.00 0.00 4.70
2806 3469 3.305709 GCTATGCCAGCCATTCGTA 57.694 52.632 0.00 0.00 45.23 3.43
2808 3471 1.541233 GCTATGCCAGCCATTCGTACT 60.541 52.381 0.00 0.00 45.23 2.73
2812 3480 1.291132 GCCAGCCATTCGTACTTCTC 58.709 55.000 0.00 0.00 0.00 2.87
2813 3481 1.405526 GCCAGCCATTCGTACTTCTCA 60.406 52.381 0.00 0.00 0.00 3.27
2816 3484 2.791560 CAGCCATTCGTACTTCTCATCG 59.208 50.000 0.00 0.00 0.00 3.84
2817 3485 2.688446 AGCCATTCGTACTTCTCATCGA 59.312 45.455 0.00 0.00 0.00 3.59
2818 3486 3.046390 GCCATTCGTACTTCTCATCGAG 58.954 50.000 0.00 0.00 33.98 4.04
2819 3487 3.243101 GCCATTCGTACTTCTCATCGAGA 60.243 47.826 0.00 0.00 36.86 4.04
2820 3488 4.557695 GCCATTCGTACTTCTCATCGAGAT 60.558 45.833 0.00 0.00 38.56 2.75
2821 3489 5.524284 CCATTCGTACTTCTCATCGAGATT 58.476 41.667 0.00 0.00 38.56 2.40
2822 3490 5.627367 CCATTCGTACTTCTCATCGAGATTC 59.373 44.000 0.00 0.00 38.56 2.52
2823 3491 5.813080 TTCGTACTTCTCATCGAGATTCA 57.187 39.130 0.00 0.00 38.56 2.57
2825 3493 5.991568 TCGTACTTCTCATCGAGATTCATC 58.008 41.667 0.00 0.00 38.56 2.92
2826 3494 5.049336 TCGTACTTCTCATCGAGATTCATCC 60.049 44.000 0.00 0.00 38.56 3.51
2827 3495 4.235939 ACTTCTCATCGAGATTCATCCG 57.764 45.455 0.00 0.00 38.56 4.18
2828 3496 3.005261 ACTTCTCATCGAGATTCATCCGG 59.995 47.826 0.00 0.00 38.56 5.14
2829 3497 1.270826 TCTCATCGAGATTCATCCGGC 59.729 52.381 0.00 0.00 33.35 6.13
2866 3534 0.179034 GGTTCAGGCCATGGAGCTAG 60.179 60.000 18.40 0.00 31.68 3.42
2897 3565 5.779806 TTCAGCGTATTTTAGCTCTGTTC 57.220 39.130 0.00 0.00 42.52 3.18
2901 3569 3.063588 GCGTATTTTAGCTCTGTTCCCAC 59.936 47.826 0.00 0.00 0.00 4.61
2906 3574 2.185004 TAGCTCTGTTCCCACTTTGC 57.815 50.000 0.00 0.00 0.00 3.68
2910 3579 0.759959 TCTGTTCCCACTTTGCCGTA 59.240 50.000 0.00 0.00 0.00 4.02
2937 3612 3.707793 GTTCTCGGTAGCATAGAGTTGG 58.292 50.000 0.00 0.00 33.96 3.77
3005 3681 1.533625 TAAAAGAGCGCTGCACCATT 58.466 45.000 18.48 3.56 0.00 3.16
3006 3682 0.675633 AAAAGAGCGCTGCACCATTT 59.324 45.000 18.48 2.43 0.00 2.32
3036 3712 9.822185 AATGGGTCTTGATTTCATTATTTTAGC 57.178 29.630 0.00 0.00 0.00 3.09
3037 3713 8.359875 TGGGTCTTGATTTCATTATTTTAGCA 57.640 30.769 0.00 0.00 0.00 3.49
3039 3715 7.706607 GGGTCTTGATTTCATTATTTTAGCACC 59.293 37.037 0.00 0.00 0.00 5.01
3040 3716 8.250332 GGTCTTGATTTCATTATTTTAGCACCA 58.750 33.333 0.00 0.00 0.00 4.17
3041 3717 9.638239 GTCTTGATTTCATTATTTTAGCACCAA 57.362 29.630 0.00 0.00 0.00 3.67
3085 3761 6.409524 TCAGAAAATGAAAATTGCAGGAGT 57.590 33.333 0.00 0.00 34.02 3.85
3086 3762 6.218019 TCAGAAAATGAAAATTGCAGGAGTG 58.782 36.000 0.00 0.00 34.02 3.51
3087 3763 5.987347 CAGAAAATGAAAATTGCAGGAGTGT 59.013 36.000 0.00 0.00 0.00 3.55
3088 3764 6.480981 CAGAAAATGAAAATTGCAGGAGTGTT 59.519 34.615 0.00 0.00 0.00 3.32
3089 3765 7.011669 CAGAAAATGAAAATTGCAGGAGTGTTT 59.988 33.333 0.00 0.00 0.00 2.83
3090 3766 7.553760 AGAAAATGAAAATTGCAGGAGTGTTTT 59.446 29.630 0.00 0.00 0.00 2.43
3091 3767 7.628769 AAATGAAAATTGCAGGAGTGTTTTT 57.371 28.000 0.00 0.00 0.00 1.94
3113 3789 7.575332 TTTTTGACGGAAAAAGAAACTCTTG 57.425 32.000 3.88 0.00 38.38 3.02
3114 3790 4.287238 TGACGGAAAAAGAAACTCTTGC 57.713 40.909 0.00 0.00 36.71 4.01
3115 3791 3.692101 TGACGGAAAAAGAAACTCTTGCA 59.308 39.130 0.00 0.00 36.71 4.08
3116 3792 4.156922 TGACGGAAAAAGAAACTCTTGCAA 59.843 37.500 0.00 0.00 36.71 4.08
3117 3793 5.163561 TGACGGAAAAAGAAACTCTTGCAAT 60.164 36.000 0.00 0.00 36.71 3.56
3118 3794 5.660460 ACGGAAAAAGAAACTCTTGCAATT 58.340 33.333 0.00 0.00 36.71 2.32
3119 3795 6.106003 ACGGAAAAAGAAACTCTTGCAATTT 58.894 32.000 0.00 0.00 36.71 1.82
3120 3796 6.593770 ACGGAAAAAGAAACTCTTGCAATTTT 59.406 30.769 0.00 0.86 36.71 1.82
3121 3797 7.119360 CGGAAAAAGAAACTCTTGCAATTTTC 58.881 34.615 16.67 16.67 36.71 2.29
3122 3798 7.201513 CGGAAAAAGAAACTCTTGCAATTTTCA 60.202 33.333 22.31 0.00 36.71 2.69
3123 3799 8.615211 GGAAAAAGAAACTCTTGCAATTTTCAT 58.385 29.630 22.31 13.07 36.71 2.57
3124 3800 9.992910 GAAAAAGAAACTCTTGCAATTTTCATT 57.007 25.926 21.28 16.03 36.71 2.57
3127 3803 9.777575 AAAGAAACTCTTGCAATTTTCATTTTG 57.222 25.926 21.28 1.23 36.71 2.44
3128 3804 8.496707 AGAAACTCTTGCAATTTTCATTTTGT 57.503 26.923 21.28 5.10 31.57 2.83
3129 3805 8.392612 AGAAACTCTTGCAATTTTCATTTTGTG 58.607 29.630 21.28 4.22 31.57 3.33
3130 3806 7.846644 AACTCTTGCAATTTTCATTTTGTGA 57.153 28.000 0.00 0.00 34.25 3.58
3131 3807 7.846644 ACTCTTGCAATTTTCATTTTGTGAA 57.153 28.000 0.00 0.00 44.87 3.18
3157 3833 9.777297 AACAAATTTAATTGCAGGAGTTAACAT 57.223 25.926 8.61 0.00 33.52 2.71
3158 3834 9.423061 ACAAATTTAATTGCAGGAGTTAACATC 57.577 29.630 8.61 2.69 33.52 3.06
3209 3887 5.243426 ACTCCACAATACAACAACAACAC 57.757 39.130 0.00 0.00 0.00 3.32
3210 3888 4.702612 ACTCCACAATACAACAACAACACA 59.297 37.500 0.00 0.00 0.00 3.72
3212 3890 5.403246 TCCACAATACAACAACAACACAAC 58.597 37.500 0.00 0.00 0.00 3.32
3213 3891 5.048013 TCCACAATACAACAACAACACAACA 60.048 36.000 0.00 0.00 0.00 3.33
3214 3892 5.288232 CCACAATACAACAACAACACAACAG 59.712 40.000 0.00 0.00 0.00 3.16
3217 3895 7.275341 CACAATACAACAACAACACAACAGATT 59.725 33.333 0.00 0.00 0.00 2.40
3218 3896 8.462811 ACAATACAACAACAACACAACAGATTA 58.537 29.630 0.00 0.00 0.00 1.75
3264 3967 8.378565 ACTCTGAATTGTTTATTTCCTCTCTCA 58.621 33.333 0.00 0.00 0.00 3.27
3693 4396 1.066114 CGCTCTTCTCCGACAACGAC 61.066 60.000 0.00 0.00 42.66 4.34
3936 4639 3.655810 CTCACGGGAGCTCTGGTGC 62.656 68.421 23.95 5.75 33.67 5.01
3968 4671 7.201487 CGAACGATATGTTTGACATAGGTTTGA 60.201 37.037 18.59 0.00 43.51 2.69
4038 4741 7.420800 GCTACTGCTTATTGCTAATTGTTGAT 58.579 34.615 0.00 0.00 43.37 2.57
4117 4820 4.488126 TTGCTTCTTTGTTGATTCTCCG 57.512 40.909 0.00 0.00 0.00 4.63
4128 4831 5.111989 TGTTGATTCTCCGAAGATTAGCTG 58.888 41.667 0.00 0.00 0.00 4.24
4131 4834 1.781786 TCTCCGAAGATTAGCTGGCT 58.218 50.000 0.00 0.00 0.00 4.75
4150 4857 3.999663 GGCTATAGTGCAAGATGCTTAGG 59.000 47.826 0.84 0.00 45.31 2.69
4155 4862 2.093235 AGTGCAAGATGCTTAGGGAGAC 60.093 50.000 3.78 0.00 45.31 3.36
4216 4923 7.946381 TCATTGAGAGTCATAGAACTAGTGT 57.054 36.000 0.00 0.00 0.00 3.55
4234 4942 7.051623 ACTAGTGTTCAATGTTCACTTTGGTA 58.948 34.615 14.87 1.36 41.66 3.25
4238 4946 8.567948 AGTGTTCAATGTTCACTTTGGTATTAG 58.432 33.333 7.09 0.00 39.00 1.73
4242 4950 8.106247 TCAATGTTCACTTTGGTATTAGAACC 57.894 34.615 0.00 0.00 40.19 3.62
4245 4953 9.802039 AATGTTCACTTTGGTATTAGAACCTTA 57.198 29.630 0.00 0.00 40.44 2.69
4266 4974 8.621286 ACCTTAAAAATATAGAATTGCAGTCGG 58.379 33.333 0.00 0.00 0.00 4.79
4271 4979 6.604735 AATATAGAATTGCAGTCGGTGAAC 57.395 37.500 0.00 0.00 0.00 3.18
4274 4982 2.549754 AGAATTGCAGTCGGTGAACTTG 59.450 45.455 0.00 0.00 0.00 3.16
4275 4983 2.254546 ATTGCAGTCGGTGAACTTGA 57.745 45.000 0.00 0.00 0.00 3.02
4276 4984 1.295792 TTGCAGTCGGTGAACTTGAC 58.704 50.000 0.00 0.00 0.00 3.18
4277 4985 0.464036 TGCAGTCGGTGAACTTGACT 59.536 50.000 3.94 3.94 43.43 3.41
4279 4987 2.101750 TGCAGTCGGTGAACTTGACTTA 59.898 45.455 6.27 0.00 40.83 2.24
4281 4989 3.184581 GCAGTCGGTGAACTTGACTTAAG 59.815 47.826 0.00 0.00 40.83 1.85
4282 4990 3.184581 CAGTCGGTGAACTTGACTTAAGC 59.815 47.826 1.29 0.00 40.83 3.09
4283 4991 2.155155 GTCGGTGAACTTGACTTAAGCG 59.845 50.000 1.29 0.00 40.16 4.68
4284 4992 2.132762 CGGTGAACTTGACTTAAGCGT 58.867 47.619 1.29 0.00 40.16 5.07
4285 4993 3.004629 TCGGTGAACTTGACTTAAGCGTA 59.995 43.478 1.29 0.00 40.16 4.42
4286 4994 3.924686 CGGTGAACTTGACTTAAGCGTAT 59.075 43.478 1.29 0.00 40.16 3.06
4287 4995 4.201589 CGGTGAACTTGACTTAAGCGTATG 60.202 45.833 1.29 0.00 40.16 2.39
4288 4996 4.092968 GGTGAACTTGACTTAAGCGTATGG 59.907 45.833 1.29 0.00 40.16 2.74
4293 5045 1.279558 TGACTTAAGCGTATGGCCCAA 59.720 47.619 0.00 0.00 45.17 4.12
4312 5065 0.107993 ATGTCACTGAGTGATGGCGG 60.108 55.000 19.31 0.00 44.63 6.13
4382 5135 0.454196 AAAGCCAAACACCGTGACAC 59.546 50.000 5.28 0.00 0.00 3.67
4482 5236 4.625972 ACACAAAAAGGTTAGAACACGG 57.374 40.909 0.00 0.00 0.00 4.94
4503 5258 1.742768 CGGTCTAGCCACTCCATCC 59.257 63.158 4.43 0.00 36.97 3.51
4508 5263 2.501723 GTCTAGCCACTCCATCCTTCAA 59.498 50.000 0.00 0.00 0.00 2.69
4518 5273 4.256920 CTCCATCCTTCAAGTTCGAATGT 58.743 43.478 0.00 0.00 0.00 2.71
4607 5364 9.240159 ACATAGTGAAAATTAACGTGAAAAACC 57.760 29.630 0.00 0.00 0.00 3.27
4616 5373 0.724453 CGTGAAAAACCATGGTCGCG 60.724 55.000 20.07 19.40 37.62 5.87
4635 5392 1.509703 GAAGTCTCAAACCCACGACC 58.490 55.000 0.00 0.00 0.00 4.79
4679 5436 3.802685 GCTAGCCACTACAATCTTTACGG 59.197 47.826 2.29 0.00 0.00 4.02
4680 5437 3.261981 AGCCACTACAATCTTTACGGG 57.738 47.619 0.00 0.00 0.00 5.28
4682 5439 3.008704 AGCCACTACAATCTTTACGGGTT 59.991 43.478 0.00 0.00 0.00 4.11
4683 5440 3.754850 GCCACTACAATCTTTACGGGTTT 59.245 43.478 0.00 0.00 0.00 3.27
4684 5441 4.216902 GCCACTACAATCTTTACGGGTTTT 59.783 41.667 0.00 0.00 0.00 2.43
4685 5442 5.695818 CCACTACAATCTTTACGGGTTTTG 58.304 41.667 0.00 0.00 0.00 2.44
4691 5448 7.297229 ACAATCTTTACGGGTTTTGTTTTTG 57.703 32.000 0.00 0.00 0.00 2.44
4706 5463 9.959749 GTTTTGTTTTTGAGACATCCTACAATA 57.040 29.630 0.00 0.00 0.00 1.90
4735 7165 8.942338 ACGTGTACACATCTACAATTGATAAT 57.058 30.769 24.98 0.00 0.00 1.28
4765 7951 9.778741 CCTTAATGTATTAGAGATAAAGGTGCA 57.221 33.333 0.00 0.00 0.00 4.57
4781 7967 0.319469 TGCACGTCGAGCTGAAATGA 60.319 50.000 15.60 0.00 0.00 2.57
4812 7998 0.033781 TGCAGCCCATTTTGCACTTC 59.966 50.000 0.00 0.00 44.72 3.01
4816 8002 1.270550 AGCCCATTTTGCACTTCTTCG 59.729 47.619 0.00 0.00 0.00 3.79
4823 8009 6.308766 CCCATTTTGCACTTCTTCGATTTTAG 59.691 38.462 0.00 0.00 0.00 1.85
4824 8010 7.083858 CCATTTTGCACTTCTTCGATTTTAGA 58.916 34.615 0.00 0.00 0.00 2.10
4827 8013 7.908193 TTTGCACTTCTTCGATTTTAGAAAC 57.092 32.000 0.00 0.00 30.55 2.78
4828 8014 5.997385 TGCACTTCTTCGATTTTAGAAACC 58.003 37.500 0.00 0.00 30.55 3.27
4829 8015 5.529430 TGCACTTCTTCGATTTTAGAAACCA 59.471 36.000 0.00 0.00 30.55 3.67
4830 8016 6.080406 GCACTTCTTCGATTTTAGAAACCAG 58.920 40.000 0.00 0.00 30.55 4.00
4831 8017 6.293462 GCACTTCTTCGATTTTAGAAACCAGT 60.293 38.462 0.00 0.00 30.55 4.00
4833 8019 7.587757 CACTTCTTCGATTTTAGAAACCAGTTG 59.412 37.037 0.00 0.00 30.55 3.16
4888 8076 7.969536 AATGAAGTTTAGATATCCATCCGTG 57.030 36.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.877178 TCAAAGCTTTAAAATTTTGACCAACTA 57.123 25.926 12.25 0.00 35.34 2.24
21 22 8.664798 GTCAAAGCTTTAAAATTTTGACCAACT 58.335 29.630 27.24 1.16 46.80 3.16
22 23 8.820628 GTCAAAGCTTTAAAATTTTGACCAAC 57.179 30.769 27.24 15.13 46.80 3.77
27 28 8.043710 TCCCAAGTCAAAGCTTTAAAATTTTGA 58.956 29.630 12.25 16.72 37.25 2.69
28 29 8.122330 GTCCCAAGTCAAAGCTTTAAAATTTTG 58.878 33.333 12.25 10.32 33.09 2.44
29 30 7.826744 TGTCCCAAGTCAAAGCTTTAAAATTTT 59.173 29.630 12.25 8.75 0.00 1.82
30 31 7.334858 TGTCCCAAGTCAAAGCTTTAAAATTT 58.665 30.769 12.25 1.22 0.00 1.82
31 32 6.883744 TGTCCCAAGTCAAAGCTTTAAAATT 58.116 32.000 12.25 6.03 0.00 1.82
32 33 6.478512 TGTCCCAAGTCAAAGCTTTAAAAT 57.521 33.333 12.25 0.00 0.00 1.82
33 34 5.923733 TGTCCCAAGTCAAAGCTTTAAAA 57.076 34.783 12.25 0.00 0.00 1.52
34 35 5.923733 TTGTCCCAAGTCAAAGCTTTAAA 57.076 34.783 12.25 0.00 0.00 1.52
35 36 5.923733 TTTGTCCCAAGTCAAAGCTTTAA 57.076 34.783 12.25 0.00 0.00 1.52
36 37 5.163457 CCTTTTGTCCCAAGTCAAAGCTTTA 60.163 40.000 12.25 0.00 33.54 1.85
37 38 4.383010 CCTTTTGTCCCAAGTCAAAGCTTT 60.383 41.667 5.69 5.69 33.54 3.51
38 39 3.132824 CCTTTTGTCCCAAGTCAAAGCTT 59.867 43.478 0.00 0.00 33.54 3.74
39 40 2.695147 CCTTTTGTCCCAAGTCAAAGCT 59.305 45.455 0.00 0.00 33.54 3.74
40 41 2.430694 ACCTTTTGTCCCAAGTCAAAGC 59.569 45.455 0.00 0.00 33.54 3.51
41 42 5.130350 TCTACCTTTTGTCCCAAGTCAAAG 58.870 41.667 0.00 0.00 33.54 2.77
42 43 5.118729 TCTACCTTTTGTCCCAAGTCAAA 57.881 39.130 0.00 0.00 30.64 2.69
43 44 4.781775 TCTACCTTTTGTCCCAAGTCAA 57.218 40.909 0.00 0.00 0.00 3.18
44 45 4.165372 ACTTCTACCTTTTGTCCCAAGTCA 59.835 41.667 0.00 0.00 0.00 3.41
45 46 4.715713 ACTTCTACCTTTTGTCCCAAGTC 58.284 43.478 0.00 0.00 0.00 3.01
46 47 4.790718 ACTTCTACCTTTTGTCCCAAGT 57.209 40.909 0.00 0.00 0.00 3.16
47 48 5.469084 GTGTACTTCTACCTTTTGTCCCAAG 59.531 44.000 0.00 0.00 0.00 3.61
48 49 5.131475 AGTGTACTTCTACCTTTTGTCCCAA 59.869 40.000 0.00 0.00 0.00 4.12
49 50 4.657039 AGTGTACTTCTACCTTTTGTCCCA 59.343 41.667 0.00 0.00 0.00 4.37
50 51 5.224821 AGTGTACTTCTACCTTTTGTCCC 57.775 43.478 0.00 0.00 0.00 4.46
51 52 8.843885 AATAAGTGTACTTCTACCTTTTGTCC 57.156 34.615 0.00 0.00 37.40 4.02
52 53 9.485206 TGAATAAGTGTACTTCTACCTTTTGTC 57.515 33.333 0.00 0.00 37.40 3.18
53 54 9.269453 GTGAATAAGTGTACTTCTACCTTTTGT 57.731 33.333 0.00 0.00 37.40 2.83
54 55 8.433126 CGTGAATAAGTGTACTTCTACCTTTTG 58.567 37.037 0.00 0.00 37.40 2.44
55 56 7.601508 CCGTGAATAAGTGTACTTCTACCTTTT 59.398 37.037 0.00 0.00 37.40 2.27
56 57 7.039504 TCCGTGAATAAGTGTACTTCTACCTTT 60.040 37.037 0.00 0.00 37.40 3.11
57 58 6.435277 TCCGTGAATAAGTGTACTTCTACCTT 59.565 38.462 0.00 0.00 37.40 3.50
58 59 5.948162 TCCGTGAATAAGTGTACTTCTACCT 59.052 40.000 0.00 0.00 37.40 3.08
59 60 6.032717 GTCCGTGAATAAGTGTACTTCTACC 58.967 44.000 0.00 0.00 37.40 3.18
60 61 5.736358 CGTCCGTGAATAAGTGTACTTCTAC 59.264 44.000 0.00 0.00 37.40 2.59
61 62 5.163723 CCGTCCGTGAATAAGTGTACTTCTA 60.164 44.000 0.00 0.00 37.40 2.10
62 63 4.380233 CCGTCCGTGAATAAGTGTACTTCT 60.380 45.833 0.00 0.00 37.40 2.85
63 64 3.855950 CCGTCCGTGAATAAGTGTACTTC 59.144 47.826 0.00 0.00 37.40 3.01
64 65 3.507233 TCCGTCCGTGAATAAGTGTACTT 59.493 43.478 2.51 2.51 39.85 2.24
65 66 3.084039 TCCGTCCGTGAATAAGTGTACT 58.916 45.455 0.00 0.00 0.00 2.73
66 67 3.432782 CTCCGTCCGTGAATAAGTGTAC 58.567 50.000 0.00 0.00 0.00 2.90
67 68 2.424601 CCTCCGTCCGTGAATAAGTGTA 59.575 50.000 0.00 0.00 0.00 2.90
68 69 1.203994 CCTCCGTCCGTGAATAAGTGT 59.796 52.381 0.00 0.00 0.00 3.55
69 70 1.475280 TCCTCCGTCCGTGAATAAGTG 59.525 52.381 0.00 0.00 0.00 3.16
70 71 1.749634 CTCCTCCGTCCGTGAATAAGT 59.250 52.381 0.00 0.00 0.00 2.24
71 72 1.749634 ACTCCTCCGTCCGTGAATAAG 59.250 52.381 0.00 0.00 0.00 1.73
72 73 1.843368 ACTCCTCCGTCCGTGAATAA 58.157 50.000 0.00 0.00 0.00 1.40
73 74 2.715749 TACTCCTCCGTCCGTGAATA 57.284 50.000 0.00 0.00 0.00 1.75
74 75 1.681793 CATACTCCTCCGTCCGTGAAT 59.318 52.381 0.00 0.00 0.00 2.57
75 76 1.100510 CATACTCCTCCGTCCGTGAA 58.899 55.000 0.00 0.00 0.00 3.18
76 77 0.034767 ACATACTCCTCCGTCCGTGA 60.035 55.000 0.00 0.00 0.00 4.35
77 78 0.815734 AACATACTCCTCCGTCCGTG 59.184 55.000 0.00 0.00 0.00 4.94
78 79 1.101331 GAACATACTCCTCCGTCCGT 58.899 55.000 0.00 0.00 0.00 4.69
79 80 1.390565 AGAACATACTCCTCCGTCCG 58.609 55.000 0.00 0.00 0.00 4.79
80 81 2.738964 GCAAGAACATACTCCTCCGTCC 60.739 54.545 0.00 0.00 0.00 4.79
81 82 2.541556 GCAAGAACATACTCCTCCGTC 58.458 52.381 0.00 0.00 0.00 4.79
82 83 1.207329 GGCAAGAACATACTCCTCCGT 59.793 52.381 0.00 0.00 0.00 4.69
83 84 1.473434 GGGCAAGAACATACTCCTCCG 60.473 57.143 0.00 0.00 0.00 4.63
84 85 1.559682 TGGGCAAGAACATACTCCTCC 59.440 52.381 0.00 0.00 0.00 4.30
85 86 3.567478 ATGGGCAAGAACATACTCCTC 57.433 47.619 0.00 0.00 0.00 3.71
86 87 3.010584 ACAATGGGCAAGAACATACTCCT 59.989 43.478 0.00 0.00 0.00 3.69
87 88 3.129287 CACAATGGGCAAGAACATACTCC 59.871 47.826 0.00 0.00 0.00 3.85
88 89 4.009675 TCACAATGGGCAAGAACATACTC 58.990 43.478 0.00 0.00 0.00 2.59
89 90 3.758554 GTCACAATGGGCAAGAACATACT 59.241 43.478 0.00 0.00 0.00 2.12
90 91 3.119495 GGTCACAATGGGCAAGAACATAC 60.119 47.826 0.00 0.00 0.00 2.39
91 92 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
92 93 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
93 94 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
94 95 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
95 96 1.619654 CTGGTCACAATGGGCAAGAA 58.380 50.000 0.00 0.00 0.00 2.52
96 97 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
97 98 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
98 99 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
99 100 2.283101 GGCTGGTCACAATGGGCA 60.283 61.111 0.00 0.00 0.00 5.36
100 101 0.323360 TAAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.00 0.00 5.36
101 102 2.442236 ATAAGGCTGGTCACAATGGG 57.558 50.000 0.00 0.00 0.00 4.00
102 103 2.355756 CGAATAAGGCTGGTCACAATGG 59.644 50.000 0.00 0.00 0.00 3.16
103 104 2.355756 CCGAATAAGGCTGGTCACAATG 59.644 50.000 0.00 0.00 0.00 2.82
104 105 2.643551 CCGAATAAGGCTGGTCACAAT 58.356 47.619 0.00 0.00 0.00 2.71
105 106 1.339631 CCCGAATAAGGCTGGTCACAA 60.340 52.381 0.00 0.00 0.00 3.33
106 107 0.251916 CCCGAATAAGGCTGGTCACA 59.748 55.000 0.00 0.00 0.00 3.58
107 108 0.539986 TCCCGAATAAGGCTGGTCAC 59.460 55.000 0.00 0.00 0.00 3.67
108 109 1.140852 CATCCCGAATAAGGCTGGTCA 59.859 52.381 0.00 0.00 0.00 4.02
109 110 1.543429 CCATCCCGAATAAGGCTGGTC 60.543 57.143 0.00 0.00 31.68 4.02
110 111 0.474184 CCATCCCGAATAAGGCTGGT 59.526 55.000 0.00 0.00 31.68 4.00
111 112 0.474184 ACCATCCCGAATAAGGCTGG 59.526 55.000 0.00 0.00 38.07 4.85
112 113 2.222027 GAACCATCCCGAATAAGGCTG 58.778 52.381 0.00 0.00 0.00 4.85
113 114 1.202651 CGAACCATCCCGAATAAGGCT 60.203 52.381 0.00 0.00 0.00 4.58
114 115 1.226746 CGAACCATCCCGAATAAGGC 58.773 55.000 0.00 0.00 0.00 4.35
151 153 2.221981 GGAAGAAAACTGAGCACACTCG 59.778 50.000 0.00 0.00 46.69 4.18
153 155 3.471680 GAGGAAGAAAACTGAGCACACT 58.528 45.455 0.00 0.00 0.00 3.55
157 159 3.136443 TCAAGGAGGAAGAAAACTGAGCA 59.864 43.478 0.00 0.00 0.00 4.26
161 163 5.126067 TGAAGTCAAGGAGGAAGAAAACTG 58.874 41.667 0.00 0.00 0.00 3.16
184 186 0.615331 ATCCACTCACGTTGCAGGAT 59.385 50.000 4.08 4.08 0.00 3.24
253 255 2.955342 AGGATCGGAGGGAGTACTAC 57.045 55.000 0.00 0.00 0.00 2.73
255 257 2.850695 AAAGGATCGGAGGGAGTACT 57.149 50.000 0.00 0.00 0.00 2.73
257 259 4.617593 AGTAAAAAGGATCGGAGGGAGTA 58.382 43.478 0.00 0.00 0.00 2.59
259 261 3.707102 AGAGTAAAAAGGATCGGAGGGAG 59.293 47.826 0.00 0.00 0.00 4.30
260 262 3.451178 CAGAGTAAAAAGGATCGGAGGGA 59.549 47.826 0.00 0.00 0.00 4.20
261 263 3.798202 CAGAGTAAAAAGGATCGGAGGG 58.202 50.000 0.00 0.00 0.00 4.30
263 265 3.861840 TGCAGAGTAAAAAGGATCGGAG 58.138 45.455 0.00 0.00 0.00 4.63
264 266 3.973206 TGCAGAGTAAAAAGGATCGGA 57.027 42.857 0.00 0.00 0.00 4.55
265 267 6.867662 AATATGCAGAGTAAAAAGGATCGG 57.132 37.500 0.00 0.00 0.00 4.18
266 268 7.657761 ACCTAATATGCAGAGTAAAAAGGATCG 59.342 37.037 2.56 0.00 0.00 3.69
267 269 8.910351 ACCTAATATGCAGAGTAAAAAGGATC 57.090 34.615 2.56 0.00 0.00 3.36
268 270 9.700831 AAACCTAATATGCAGAGTAAAAAGGAT 57.299 29.630 2.56 0.00 0.00 3.24
269 271 8.956426 CAAACCTAATATGCAGAGTAAAAAGGA 58.044 33.333 2.56 0.00 0.00 3.36
270 272 8.739972 ACAAACCTAATATGCAGAGTAAAAAGG 58.260 33.333 0.00 0.00 0.00 3.11
271 273 9.774742 GACAAACCTAATATGCAGAGTAAAAAG 57.225 33.333 0.00 0.00 0.00 2.27
272 274 9.515226 AGACAAACCTAATATGCAGAGTAAAAA 57.485 29.630 0.00 0.00 0.00 1.94
273 275 8.946085 CAGACAAACCTAATATGCAGAGTAAAA 58.054 33.333 0.00 0.00 0.00 1.52
274 276 8.318412 TCAGACAAACCTAATATGCAGAGTAAA 58.682 33.333 0.00 0.00 0.00 2.01
275 277 7.847096 TCAGACAAACCTAATATGCAGAGTAA 58.153 34.615 0.00 0.00 0.00 2.24
276 278 7.418337 TCAGACAAACCTAATATGCAGAGTA 57.582 36.000 0.00 0.00 0.00 2.59
277 279 6.299805 TCAGACAAACCTAATATGCAGAGT 57.700 37.500 0.00 0.00 0.00 3.24
278 280 6.820656 ACTTCAGACAAACCTAATATGCAGAG 59.179 38.462 0.00 0.00 0.00 3.35
279 281 6.711277 ACTTCAGACAAACCTAATATGCAGA 58.289 36.000 0.00 0.00 0.00 4.26
280 282 6.595326 TGACTTCAGACAAACCTAATATGCAG 59.405 38.462 0.00 0.00 0.00 4.41
281 283 6.472016 TGACTTCAGACAAACCTAATATGCA 58.528 36.000 0.00 0.00 0.00 3.96
282 284 6.985188 TGACTTCAGACAAACCTAATATGC 57.015 37.500 0.00 0.00 0.00 3.14
283 285 9.388506 AGATTGACTTCAGACAAACCTAATATG 57.611 33.333 0.00 0.00 33.89 1.78
284 286 9.606631 GAGATTGACTTCAGACAAACCTAATAT 57.393 33.333 0.00 0.00 33.89 1.28
285 287 8.593679 TGAGATTGACTTCAGACAAACCTAATA 58.406 33.333 0.00 0.00 33.89 0.98
286 288 7.453393 TGAGATTGACTTCAGACAAACCTAAT 58.547 34.615 0.00 0.00 33.89 1.73
287 289 6.826668 TGAGATTGACTTCAGACAAACCTAA 58.173 36.000 0.00 0.00 33.89 2.69
288 290 6.419484 TGAGATTGACTTCAGACAAACCTA 57.581 37.500 0.00 0.00 33.89 3.08
289 291 5.296151 TGAGATTGACTTCAGACAAACCT 57.704 39.130 0.00 0.00 33.89 3.50
290 292 5.123027 GGATGAGATTGACTTCAGACAAACC 59.877 44.000 0.00 0.00 33.89 3.27
291 293 5.702670 TGGATGAGATTGACTTCAGACAAAC 59.297 40.000 0.00 0.00 33.89 2.93
292 294 5.868454 TGGATGAGATTGACTTCAGACAAA 58.132 37.500 0.00 0.00 33.89 2.83
293 295 5.488262 TGGATGAGATTGACTTCAGACAA 57.512 39.130 0.00 0.00 34.59 3.18
294 296 5.012458 AGTTGGATGAGATTGACTTCAGACA 59.988 40.000 0.00 0.00 0.00 3.41
295 297 5.486526 AGTTGGATGAGATTGACTTCAGAC 58.513 41.667 0.00 0.00 0.00 3.51
296 298 5.752036 AGTTGGATGAGATTGACTTCAGA 57.248 39.130 0.00 0.00 0.00 3.27
297 299 6.429078 TCAAAGTTGGATGAGATTGACTTCAG 59.571 38.462 0.00 0.00 0.00 3.02
298 300 6.205464 GTCAAAGTTGGATGAGATTGACTTCA 59.795 38.462 8.70 0.00 41.92 3.02
299 301 6.348868 GGTCAAAGTTGGATGAGATTGACTTC 60.349 42.308 13.97 0.00 43.66 3.01
300 302 5.474876 GGTCAAAGTTGGATGAGATTGACTT 59.525 40.000 13.97 0.00 43.66 3.01
301 303 5.006386 GGTCAAAGTTGGATGAGATTGACT 58.994 41.667 13.97 0.00 43.66 3.41
302 304 4.761739 TGGTCAAAGTTGGATGAGATTGAC 59.238 41.667 7.68 7.68 43.51 3.18
303 305 4.984295 TGGTCAAAGTTGGATGAGATTGA 58.016 39.130 0.00 0.00 0.00 2.57
304 306 5.706916 CTTGGTCAAAGTTGGATGAGATTG 58.293 41.667 0.00 0.00 0.00 2.67
305 307 5.972107 CTTGGTCAAAGTTGGATGAGATT 57.028 39.130 0.00 0.00 0.00 2.40
341 343 9.679661 TGGTGTTGTTATGTGAATGTCTATAAT 57.320 29.630 0.00 0.00 0.00 1.28
342 344 9.508642 TTGGTGTTGTTATGTGAATGTCTATAA 57.491 29.630 0.00 0.00 0.00 0.98
343 345 9.679661 ATTGGTGTTGTTATGTGAATGTCTATA 57.320 29.630 0.00 0.00 0.00 1.31
344 346 7.994425 TTGGTGTTGTTATGTGAATGTCTAT 57.006 32.000 0.00 0.00 0.00 1.98
345 347 7.994425 ATTGGTGTTGTTATGTGAATGTCTA 57.006 32.000 0.00 0.00 0.00 2.59
346 348 6.899393 ATTGGTGTTGTTATGTGAATGTCT 57.101 33.333 0.00 0.00 0.00 3.41
347 349 8.458052 TGATATTGGTGTTGTTATGTGAATGTC 58.542 33.333 0.00 0.00 0.00 3.06
348 350 8.347004 TGATATTGGTGTTGTTATGTGAATGT 57.653 30.769 0.00 0.00 0.00 2.71
349 351 9.806203 AATGATATTGGTGTTGTTATGTGAATG 57.194 29.630 0.00 0.00 0.00 2.67
352 354 9.898152 TCTAATGATATTGGTGTTGTTATGTGA 57.102 29.630 0.00 0.00 0.00 3.58
442 444 9.515226 ACTTTGCTAAGTTTGACCAGATTTATA 57.485 29.630 7.78 0.00 41.85 0.98
443 445 8.409358 ACTTTGCTAAGTTTGACCAGATTTAT 57.591 30.769 7.78 0.00 41.85 1.40
444 446 7.817418 ACTTTGCTAAGTTTGACCAGATTTA 57.183 32.000 7.78 0.00 41.85 1.40
445 447 6.715347 ACTTTGCTAAGTTTGACCAGATTT 57.285 33.333 7.78 0.00 41.85 2.17
465 467 5.004922 TGATTTTGCCGAAAGTCAAACTT 57.995 34.783 0.00 0.00 40.80 2.66
466 468 4.647424 TGATTTTGCCGAAAGTCAAACT 57.353 36.364 0.00 0.00 35.51 2.66
467 469 5.234116 ACATTGATTTTGCCGAAAGTCAAAC 59.766 36.000 10.22 0.00 45.49 2.93
468 470 5.233902 CACATTGATTTTGCCGAAAGTCAAA 59.766 36.000 10.22 0.00 45.49 2.69
469 471 4.744137 CACATTGATTTTGCCGAAAGTCAA 59.256 37.500 9.04 9.04 46.04 3.18
470 472 4.297510 CACATTGATTTTGCCGAAAGTCA 58.702 39.130 0.00 0.00 36.36 3.41
471 473 3.121778 GCACATTGATTTTGCCGAAAGTC 59.878 43.478 0.00 0.00 0.00 3.01
472 474 3.059166 GCACATTGATTTTGCCGAAAGT 58.941 40.909 0.00 0.00 0.00 2.66
473 475 3.058450 TGCACATTGATTTTGCCGAAAG 58.942 40.909 0.00 0.00 35.26 2.62
474 476 3.058450 CTGCACATTGATTTTGCCGAAA 58.942 40.909 0.00 0.00 35.26 3.46
475 477 2.035704 ACTGCACATTGATTTTGCCGAA 59.964 40.909 0.00 0.00 35.26 4.30
476 478 1.612950 ACTGCACATTGATTTTGCCGA 59.387 42.857 0.00 0.00 35.26 5.54
477 479 1.722464 CACTGCACATTGATTTTGCCG 59.278 47.619 0.00 0.00 35.26 5.69
478 480 2.758009 ACACTGCACATTGATTTTGCC 58.242 42.857 0.00 0.00 35.26 4.52
479 481 5.903764 TTTACACTGCACATTGATTTTGC 57.096 34.783 0.00 0.00 36.76 3.68
480 482 7.224362 TCCTTTTTACACTGCACATTGATTTTG 59.776 33.333 0.00 0.00 0.00 2.44
481 483 7.271511 TCCTTTTTACACTGCACATTGATTTT 58.728 30.769 0.00 0.00 0.00 1.82
482 484 6.815089 TCCTTTTTACACTGCACATTGATTT 58.185 32.000 0.00 0.00 0.00 2.17
483 485 6.403866 TCCTTTTTACACTGCACATTGATT 57.596 33.333 0.00 0.00 0.00 2.57
484 486 6.209192 TGATCCTTTTTACACTGCACATTGAT 59.791 34.615 0.00 0.00 0.00 2.57
485 487 5.534278 TGATCCTTTTTACACTGCACATTGA 59.466 36.000 0.00 0.00 0.00 2.57
486 488 5.771469 TGATCCTTTTTACACTGCACATTG 58.229 37.500 0.00 0.00 0.00 2.82
487 489 5.769662 TCTGATCCTTTTTACACTGCACATT 59.230 36.000 0.00 0.00 0.00 2.71
488 490 5.316167 TCTGATCCTTTTTACACTGCACAT 58.684 37.500 0.00 0.00 0.00 3.21
489 491 4.713553 TCTGATCCTTTTTACACTGCACA 58.286 39.130 0.00 0.00 0.00 4.57
490 492 4.154918 CCTCTGATCCTTTTTACACTGCAC 59.845 45.833 0.00 0.00 0.00 4.57
491 493 4.326826 CCTCTGATCCTTTTTACACTGCA 58.673 43.478 0.00 0.00 0.00 4.41
492 494 3.691609 CCCTCTGATCCTTTTTACACTGC 59.308 47.826 0.00 0.00 0.00 4.40
493 495 5.165961 TCCCTCTGATCCTTTTTACACTG 57.834 43.478 0.00 0.00 0.00 3.66
494 496 4.846940 ACTCCCTCTGATCCTTTTTACACT 59.153 41.667 0.00 0.00 0.00 3.55
495 497 5.167303 ACTCCCTCTGATCCTTTTTACAC 57.833 43.478 0.00 0.00 0.00 2.90
496 498 6.672218 TCATACTCCCTCTGATCCTTTTTACA 59.328 38.462 0.00 0.00 0.00 2.41
497 499 6.987404 GTCATACTCCCTCTGATCCTTTTTAC 59.013 42.308 0.00 0.00 0.00 2.01
498 500 6.903534 AGTCATACTCCCTCTGATCCTTTTTA 59.096 38.462 0.00 0.00 0.00 1.52
499 501 5.728741 AGTCATACTCCCTCTGATCCTTTTT 59.271 40.000 0.00 0.00 0.00 1.94
500 502 5.284582 AGTCATACTCCCTCTGATCCTTTT 58.715 41.667 0.00 0.00 0.00 2.27
501 503 4.889780 AGTCATACTCCCTCTGATCCTTT 58.110 43.478 0.00 0.00 0.00 3.11
502 504 4.551215 AGTCATACTCCCTCTGATCCTT 57.449 45.455 0.00 0.00 0.00 3.36
503 505 4.505918 CGTAGTCATACTCCCTCTGATCCT 60.506 50.000 0.00 0.00 0.00 3.24
504 506 3.754323 CGTAGTCATACTCCCTCTGATCC 59.246 52.174 0.00 0.00 0.00 3.36
505 507 4.643463 TCGTAGTCATACTCCCTCTGATC 58.357 47.826 0.00 0.00 0.00 2.92
506 508 4.348461 TCTCGTAGTCATACTCCCTCTGAT 59.652 45.833 0.00 0.00 0.00 2.90
507 509 3.710165 TCTCGTAGTCATACTCCCTCTGA 59.290 47.826 0.00 0.00 0.00 3.27
508 510 4.074627 TCTCGTAGTCATACTCCCTCTG 57.925 50.000 0.00 0.00 0.00 3.35
509 511 4.409574 TCTTCTCGTAGTCATACTCCCTCT 59.590 45.833 0.00 0.00 0.00 3.69
510 512 4.706035 TCTTCTCGTAGTCATACTCCCTC 58.294 47.826 0.00 0.00 0.00 4.30
511 513 4.774660 TCTTCTCGTAGTCATACTCCCT 57.225 45.455 0.00 0.00 0.00 4.20
512 514 5.589452 TCTTTCTTCTCGTAGTCATACTCCC 59.411 44.000 0.00 0.00 0.00 4.30
513 515 6.680874 TCTTTCTTCTCGTAGTCATACTCC 57.319 41.667 0.00 0.00 0.00 3.85
514 516 7.921787 TGATCTTTCTTCTCGTAGTCATACTC 58.078 38.462 0.00 0.00 0.00 2.59
515 517 7.867305 TGATCTTTCTTCTCGTAGTCATACT 57.133 36.000 0.00 0.00 0.00 2.12
516 518 9.176181 GAATGATCTTTCTTCTCGTAGTCATAC 57.824 37.037 12.81 0.00 0.00 2.39
517 519 8.353684 GGAATGATCTTTCTTCTCGTAGTCATA 58.646 37.037 17.92 0.00 0.00 2.15
518 520 7.147828 TGGAATGATCTTTCTTCTCGTAGTCAT 60.148 37.037 17.92 0.00 0.00 3.06
519 521 6.152831 TGGAATGATCTTTCTTCTCGTAGTCA 59.847 38.462 17.92 4.18 0.00 3.41
520 522 6.565234 TGGAATGATCTTTCTTCTCGTAGTC 58.435 40.000 17.92 2.04 0.00 2.59
521 523 6.531503 TGGAATGATCTTTCTTCTCGTAGT 57.468 37.500 17.92 0.00 0.00 2.73
552 554 3.202467 GTGGTTTGGTGCCACGTT 58.798 55.556 0.00 0.00 45.57 3.99
589 591 0.179018 ACTTTTCCTTGTGCGCCTCT 60.179 50.000 4.18 0.00 0.00 3.69
601 603 2.489722 GAGCATTGACCTGGACTTTTCC 59.510 50.000 0.00 0.00 43.19 3.13
610 612 1.467920 GAAAGGGGAGCATTGACCTG 58.532 55.000 0.00 0.00 32.66 4.00
611 613 0.332972 GGAAAGGGGAGCATTGACCT 59.667 55.000 0.00 0.00 34.04 3.85
866 888 2.963371 GGACAACTCGCGAGGACT 59.037 61.111 36.93 19.94 0.00 3.85
1074 1105 2.581354 CCGACCCTGAGCTCCTTG 59.419 66.667 12.15 1.35 0.00 3.61
1076 1107 2.623450 TACCCGACCCTGAGCTCCT 61.623 63.158 12.15 0.00 0.00 3.69
1227 1258 3.002791 CGCATGTTTTAGAAGGCAGAGA 58.997 45.455 0.00 0.00 0.00 3.10
1234 1265 2.281498 TCGATCGCGCATGTTTTAGAAG 59.719 45.455 11.09 0.00 37.46 2.85
1235 1266 2.263945 TCGATCGCGCATGTTTTAGAA 58.736 42.857 11.09 0.00 37.46 2.10
1239 1270 0.304705 GGATCGATCGCGCATGTTTT 59.695 50.000 18.81 0.00 37.46 2.43
1297 1329 0.523966 GACCTGAGACTGAGACCACG 59.476 60.000 0.00 0.00 0.00 4.94
1336 1368 6.040391 GCATCCCTGGCACAATTAGTAAAATA 59.960 38.462 0.00 0.00 38.70 1.40
1343 1375 0.664761 CGCATCCCTGGCACAATTAG 59.335 55.000 0.00 0.00 38.70 1.73
1542 1574 2.578713 CGGCGTACGTACCAGCAG 60.579 66.667 21.82 16.23 37.93 4.24
1616 1649 4.873129 GGAGAATCTGCGCCGCGA 62.873 66.667 18.91 5.25 33.73 5.87
1707 1740 2.281761 ACAGGAAACGCCAGGCAG 60.282 61.111 13.30 7.00 40.02 4.85
1759 1792 3.559171 CCTCTGGATTCTGGAACCGAAAA 60.559 47.826 0.00 0.00 0.00 2.29
1780 1813 1.253100 TCCATTTTGAAAGACCGGCC 58.747 50.000 0.00 0.00 0.00 6.13
1781 1814 3.592898 ATTCCATTTTGAAAGACCGGC 57.407 42.857 0.00 0.00 0.00 6.13
1801 1842 0.902531 CGCTCAGTTTCTTCCCCCTA 59.097 55.000 0.00 0.00 0.00 3.53
1864 1905 5.531659 TGCACTGAAGTACTCCTATACTAGC 59.468 44.000 0.00 0.00 34.18 3.42
1977 2032 1.578206 CGAGAGACGCTGACCACAGA 61.578 60.000 0.00 0.00 46.03 3.41
2010 2065 1.202758 ACGAAGTGGATGTGCAGGAAA 60.203 47.619 0.00 0.00 42.51 3.13
2032 2115 3.491104 CCGTCAATAGTGTAGGAGCTTCC 60.491 52.174 0.00 0.00 36.58 3.46
2047 2130 3.732892 CGCCCGTTTGCCGTCAAT 61.733 61.111 0.00 0.00 33.66 2.57
2067 2151 1.209998 GCGAAGGTAAGCGATTCTCC 58.790 55.000 0.00 0.00 0.00 3.71
2080 2164 3.181520 CGGAATAAAAGTCAGTGCGAAGG 60.182 47.826 0.00 0.00 0.00 3.46
2149 2250 9.313118 CTACAAACTTTTGGCAGAAACTAATTT 57.687 29.630 6.65 0.00 42.34 1.82
2165 2266 3.636300 TGAACATGCTGCCTACAAACTTT 59.364 39.130 0.00 0.00 0.00 2.66
2168 2269 3.855689 ATGAACATGCTGCCTACAAAC 57.144 42.857 0.00 0.00 0.00 2.93
2170 2271 3.156293 ACAATGAACATGCTGCCTACAA 58.844 40.909 0.00 0.00 0.00 2.41
2171 2272 2.794103 ACAATGAACATGCTGCCTACA 58.206 42.857 0.00 0.00 0.00 2.74
2172 2273 3.855689 AACAATGAACATGCTGCCTAC 57.144 42.857 0.00 0.00 0.00 3.18
2173 2274 4.870123 AAAACAATGAACATGCTGCCTA 57.130 36.364 0.00 0.00 0.00 3.93
2174 2275 3.756933 AAAACAATGAACATGCTGCCT 57.243 38.095 0.00 0.00 0.00 4.75
2175 2276 3.058777 CCAAAAACAATGAACATGCTGCC 60.059 43.478 0.00 0.00 0.00 4.85
2176 2277 3.058777 CCCAAAAACAATGAACATGCTGC 60.059 43.478 0.00 0.00 0.00 5.25
2177 2278 4.378774 TCCCAAAAACAATGAACATGCTG 58.621 39.130 0.00 0.00 0.00 4.41
2178 2279 4.686191 TCCCAAAAACAATGAACATGCT 57.314 36.364 0.00 0.00 0.00 3.79
2179 2280 5.063817 GCTATCCCAAAAACAATGAACATGC 59.936 40.000 0.00 0.00 0.00 4.06
2180 2281 6.400568 AGCTATCCCAAAAACAATGAACATG 58.599 36.000 0.00 0.00 0.00 3.21
2181 2282 6.610075 AGCTATCCCAAAAACAATGAACAT 57.390 33.333 0.00 0.00 0.00 2.71
2182 2283 6.418057 AAGCTATCCCAAAAACAATGAACA 57.582 33.333 0.00 0.00 0.00 3.18
2183 2284 6.811665 GGTAAGCTATCCCAAAAACAATGAAC 59.188 38.462 0.00 0.00 0.00 3.18
2184 2285 6.495181 TGGTAAGCTATCCCAAAAACAATGAA 59.505 34.615 4.91 0.00 0.00 2.57
2185 2286 6.013379 TGGTAAGCTATCCCAAAAACAATGA 58.987 36.000 4.91 0.00 0.00 2.57
2186 2287 6.279513 TGGTAAGCTATCCCAAAAACAATG 57.720 37.500 4.91 0.00 0.00 2.82
2187 2288 7.180051 TGAATGGTAAGCTATCCCAAAAACAAT 59.820 33.333 3.33 0.00 0.00 2.71
2188 2289 6.495181 TGAATGGTAAGCTATCCCAAAAACAA 59.505 34.615 3.33 0.00 0.00 2.83
2189 2290 6.013379 TGAATGGTAAGCTATCCCAAAAACA 58.987 36.000 3.33 0.61 0.00 2.83
2190 2291 6.524101 TGAATGGTAAGCTATCCCAAAAAC 57.476 37.500 3.33 0.00 0.00 2.43
2191 2292 6.406849 GCATGAATGGTAAGCTATCCCAAAAA 60.407 38.462 0.00 0.00 0.00 1.94
2192 2293 5.068987 GCATGAATGGTAAGCTATCCCAAAA 59.931 40.000 0.00 0.00 0.00 2.44
2193 2294 4.584325 GCATGAATGGTAAGCTATCCCAAA 59.416 41.667 0.00 0.00 0.00 3.28
2194 2295 4.144297 GCATGAATGGTAAGCTATCCCAA 58.856 43.478 0.00 0.00 0.00 4.12
2195 2296 3.498481 GGCATGAATGGTAAGCTATCCCA 60.498 47.826 0.00 1.81 0.00 4.37
2196 2297 3.084786 GGCATGAATGGTAAGCTATCCC 58.915 50.000 0.00 0.00 0.00 3.85
2197 2298 2.744202 CGGCATGAATGGTAAGCTATCC 59.256 50.000 0.00 0.00 0.00 2.59
2198 2299 3.664107 TCGGCATGAATGGTAAGCTATC 58.336 45.455 0.00 0.00 0.00 2.08
2199 2300 3.769739 TCGGCATGAATGGTAAGCTAT 57.230 42.857 0.00 0.00 0.00 2.97
2200 2301 3.552132 TTCGGCATGAATGGTAAGCTA 57.448 42.857 0.00 0.00 0.00 3.32
2201 2302 2.418368 TTCGGCATGAATGGTAAGCT 57.582 45.000 0.00 0.00 0.00 3.74
2202 2303 3.374745 CATTTCGGCATGAATGGTAAGC 58.625 45.455 0.00 0.00 36.22 3.09
2203 2304 3.381272 ACCATTTCGGCATGAATGGTAAG 59.619 43.478 21.84 3.57 42.03 2.34
2204 2305 3.360867 ACCATTTCGGCATGAATGGTAA 58.639 40.909 21.84 0.00 42.03 2.85
2205 2306 3.011566 ACCATTTCGGCATGAATGGTA 57.988 42.857 21.84 0.00 42.03 3.25
2206 2307 1.851304 ACCATTTCGGCATGAATGGT 58.149 45.000 18.99 18.99 40.53 3.55
2207 2308 2.813061 GAACCATTTCGGCATGAATGG 58.187 47.619 17.94 17.94 39.33 3.16
2218 2319 1.448985 TGCTGCCTACGAACCATTTC 58.551 50.000 0.00 0.00 0.00 2.17
2219 2320 1.745087 CATGCTGCCTACGAACCATTT 59.255 47.619 0.00 0.00 0.00 2.32
2220 2321 1.340017 ACATGCTGCCTACGAACCATT 60.340 47.619 0.00 0.00 0.00 3.16
2221 2322 0.253044 ACATGCTGCCTACGAACCAT 59.747 50.000 0.00 0.00 0.00 3.55
2222 2323 0.036164 AACATGCTGCCTACGAACCA 59.964 50.000 0.00 0.00 0.00 3.67
2223 2324 2.018542 TAACATGCTGCCTACGAACC 57.981 50.000 0.00 0.00 0.00 3.62
2266 2368 5.931724 GGAAACATTTCCGATTCACCATTTT 59.068 36.000 7.62 0.00 46.36 1.82
2280 2382 5.107104 GGCCGATTTTCTTTGGAAACATTTC 60.107 40.000 0.00 0.00 40.63 2.17
2313 2415 1.374252 CCGTCCCTGTCAAACGAGG 60.374 63.158 0.00 0.00 38.65 4.63
2314 2416 1.374252 CCCGTCCCTGTCAAACGAG 60.374 63.158 0.00 0.00 38.65 4.18
2316 2418 3.047877 GCCCGTCCCTGTCAAACG 61.048 66.667 0.00 0.00 36.22 3.60
2317 2419 3.047877 CGCCCGTCCCTGTCAAAC 61.048 66.667 0.00 0.00 0.00 2.93
2342 2444 2.204029 TTACGGGGAGCAAGGGGT 60.204 61.111 0.00 0.00 0.00 4.95
2384 2496 3.665675 GACGCTGACGCCATTCCCT 62.666 63.158 0.00 0.00 45.53 4.20
2385 2497 3.195698 GACGCTGACGCCATTCCC 61.196 66.667 0.00 0.00 45.53 3.97
2439 2551 3.636043 GTGTCGTGTGCCGGTGTG 61.636 66.667 1.90 0.00 37.11 3.82
2445 2557 2.814183 CTACCGAGGTGTCGTGTGCC 62.814 65.000 4.80 0.00 45.30 5.01
2446 2558 1.443872 CTACCGAGGTGTCGTGTGC 60.444 63.158 4.80 0.00 45.30 4.57
2447 2559 1.211969 CCTACCGAGGTGTCGTGTG 59.788 63.158 4.80 0.00 45.30 3.82
2455 3097 0.538118 TTAAATGCGCCTACCGAGGT 59.462 50.000 4.18 0.00 45.78 3.85
2459 3101 0.575390 CTCGTTAAATGCGCCTACCG 59.425 55.000 4.18 0.00 40.75 4.02
2462 3104 0.812412 GGCCTCGTTAAATGCGCCTA 60.812 55.000 4.18 0.00 33.50 3.93
2651 3309 1.424493 GCAAAGGATCTCGCGTGGAG 61.424 60.000 5.77 0.00 44.58 3.86
2687 3345 0.109272 TCTGATCCGACAGAACGTGC 60.109 55.000 0.00 0.00 42.79 5.34
2729 3387 4.777463 ACTAAAACGATCCCCATTACAGG 58.223 43.478 0.00 0.00 0.00 4.00
2733 3391 6.275335 CGAACTACTAAAACGATCCCCATTA 58.725 40.000 0.00 0.00 0.00 1.90
2739 3397 3.778618 AGGCGAACTACTAAAACGATCC 58.221 45.455 0.00 0.00 0.00 3.36
2753 3411 0.955919 CAACAAGGGAGGAGGCGAAC 60.956 60.000 0.00 0.00 0.00 3.95
2761 3419 0.597377 GCGCAAAACAACAAGGGAGG 60.597 55.000 0.30 0.00 0.00 4.30
2802 3465 5.049336 GGATGAATCTCGATGAGAAGTACGA 60.049 44.000 0.00 0.00 42.27 3.43
2806 3469 3.005261 CCGGATGAATCTCGATGAGAAGT 59.995 47.826 0.00 0.00 42.27 3.01
2808 3471 2.288457 GCCGGATGAATCTCGATGAGAA 60.288 50.000 5.05 0.00 42.27 2.87
2812 3480 0.033920 TGGCCGGATGAATCTCGATG 59.966 55.000 5.05 0.00 0.00 3.84
2813 3481 0.979665 ATGGCCGGATGAATCTCGAT 59.020 50.000 5.05 0.00 0.00 3.59
2816 3484 3.239861 GGATGGCCGGATGAATCTC 57.760 57.895 5.05 0.00 0.00 2.75
2827 3495 0.970427 AATCAAACACCCGGATGGCC 60.970 55.000 0.73 0.00 37.83 5.36
2828 3496 0.173255 CAATCAAACACCCGGATGGC 59.827 55.000 0.73 0.00 37.83 4.40
2829 3497 0.817013 CCAATCAAACACCCGGATGG 59.183 55.000 0.73 0.00 41.37 3.51
2866 3534 8.669394 AGCTAAAATACGCTGAAAACAAATAC 57.331 30.769 0.00 0.00 34.69 1.89
2897 3565 1.073177 CGTAACTACGGCAAAGTGGG 58.927 55.000 1.25 0.00 45.30 4.61
2910 3579 4.194640 TCTATGCTACCGAGAACGTAACT 58.805 43.478 0.00 0.00 37.88 2.24
3034 3710 9.389755 ACAAGTTTAATTTGTTTAATTGGTGCT 57.610 25.926 0.00 0.00 37.07 4.40
3035 3711 9.995957 AACAAGTTTAATTTGTTTAATTGGTGC 57.004 25.926 11.83 0.00 44.04 5.01
3089 3765 6.090223 GCAAGAGTTTCTTTTTCCGTCAAAAA 59.910 34.615 3.13 3.13 40.93 1.94
3090 3766 5.575218 GCAAGAGTTTCTTTTTCCGTCAAAA 59.425 36.000 0.00 0.00 33.78 2.44
3091 3767 5.099575 GCAAGAGTTTCTTTTTCCGTCAAA 58.900 37.500 0.00 0.00 33.78 2.69
3092 3768 4.156922 TGCAAGAGTTTCTTTTTCCGTCAA 59.843 37.500 0.00 0.00 33.78 3.18
3093 3769 3.692101 TGCAAGAGTTTCTTTTTCCGTCA 59.308 39.130 0.00 0.00 33.78 4.35
3094 3770 4.287238 TGCAAGAGTTTCTTTTTCCGTC 57.713 40.909 0.00 0.00 33.78 4.79
3095 3771 4.712122 TTGCAAGAGTTTCTTTTTCCGT 57.288 36.364 0.00 0.00 33.78 4.69
3096 3772 6.588348 AAATTGCAAGAGTTTCTTTTTCCG 57.412 33.333 4.94 0.00 33.78 4.30
3097 3773 7.973601 TGAAAATTGCAAGAGTTTCTTTTTCC 58.026 30.769 22.99 10.90 33.78 3.13
3098 3774 9.992910 AATGAAAATTGCAAGAGTTTCTTTTTC 57.007 25.926 22.99 20.38 33.78 2.29
3101 3777 9.777575 CAAAATGAAAATTGCAAGAGTTTCTTT 57.222 25.926 22.99 20.66 33.78 2.52
3102 3778 8.949177 ACAAAATGAAAATTGCAAGAGTTTCTT 58.051 25.926 22.99 17.67 37.14 2.52
3103 3779 8.392612 CACAAAATGAAAATTGCAAGAGTTTCT 58.607 29.630 22.99 12.64 32.41 2.52
3104 3780 8.389603 TCACAAAATGAAAATTGCAAGAGTTTC 58.610 29.630 18.93 18.93 33.02 2.78
3105 3781 8.266392 TCACAAAATGAAAATTGCAAGAGTTT 57.734 26.923 4.94 5.28 33.02 2.66
3106 3782 7.846644 TCACAAAATGAAAATTGCAAGAGTT 57.153 28.000 4.94 0.00 33.02 3.01
3107 3783 7.846644 TTCACAAAATGAAAATTGCAAGAGT 57.153 28.000 4.94 0.00 44.59 3.24
3125 3801 7.768120 ACTCCTGCAATTAAATTTGTTTCACAA 59.232 29.630 0.00 0.00 36.11 3.33
3126 3802 7.271511 ACTCCTGCAATTAAATTTGTTTCACA 58.728 30.769 0.00 0.00 0.00 3.58
3127 3803 7.713764 ACTCCTGCAATTAAATTTGTTTCAC 57.286 32.000 0.00 0.00 0.00 3.18
3128 3804 9.823647 TTAACTCCTGCAATTAAATTTGTTTCA 57.176 25.926 0.00 0.00 0.00 2.69
3130 3806 9.606631 TGTTAACTCCTGCAATTAAATTTGTTT 57.393 25.926 7.22 0.00 0.00 2.83
3131 3807 9.777297 ATGTTAACTCCTGCAATTAAATTTGTT 57.223 25.926 7.22 0.00 0.00 2.83
3132 3808 9.423061 GATGTTAACTCCTGCAATTAAATTTGT 57.577 29.630 7.22 0.00 0.00 2.83
3133 3809 9.643693 AGATGTTAACTCCTGCAATTAAATTTG 57.356 29.630 7.22 0.00 0.00 2.32
3218 3896 8.912988 TCAGAGTCAAACCAAGTCAAAATATTT 58.087 29.630 0.00 0.00 0.00 1.40
3654 4357 0.966920 TCTGGTCGGAGTTCAGGAAC 59.033 55.000 4.00 4.00 41.45 3.62
3936 4639 1.257936 CAAACATATCGTTCGCTCCCG 59.742 52.381 0.00 0.00 36.59 5.14
3945 4648 7.042725 CGATCAAACCTATGTCAAACATATCGT 60.043 37.037 0.57 0.00 40.01 3.73
3947 4650 8.064222 CACGATCAAACCTATGTCAAACATATC 58.936 37.037 0.57 0.00 40.01 1.63
3953 4656 4.387559 CGACACGATCAAACCTATGTCAAA 59.612 41.667 0.00 0.00 36.99 2.69
3968 4671 1.284982 GCACAGAACTGCGACACGAT 61.285 55.000 1.46 0.00 0.00 3.73
4038 4741 7.816513 CAGAGGCATCGATTTCTCTATTATTCA 59.183 37.037 20.46 0.00 35.13 2.57
4117 4820 4.887748 TGCACTATAGCCAGCTAATCTTC 58.112 43.478 3.02 0.00 31.73 2.87
4150 4857 8.077386 TCATTATTTGTTTTTGTAACCGTCTCC 58.923 33.333 0.00 0.00 0.00 3.71
4214 4921 8.684386 TCTAATACCAAAGTGAACATTGAACA 57.316 30.769 0.19 0.00 0.00 3.18
4216 4923 8.573035 GGTTCTAATACCAAAGTGAACATTGAA 58.427 33.333 0.00 0.00 38.12 2.69
4242 4950 9.438291 CACCGACTGCAATTCTATATTTTTAAG 57.562 33.333 0.00 0.00 0.00 1.85
4245 4953 7.624360 TCACCGACTGCAATTCTATATTTTT 57.376 32.000 0.00 0.00 0.00 1.94
4253 4961 2.549754 CAAGTTCACCGACTGCAATTCT 59.450 45.455 0.00 0.00 0.00 2.40
4254 4962 2.548057 TCAAGTTCACCGACTGCAATTC 59.452 45.455 0.00 0.00 0.00 2.17
4264 4972 2.132762 ACGCTTAAGTCAAGTTCACCG 58.867 47.619 4.02 0.00 36.55 4.94
4265 4973 4.092968 CCATACGCTTAAGTCAAGTTCACC 59.907 45.833 4.02 0.00 36.55 4.02
4266 4974 4.435651 GCCATACGCTTAAGTCAAGTTCAC 60.436 45.833 4.02 0.00 36.55 3.18
4271 4979 1.940613 GGGCCATACGCTTAAGTCAAG 59.059 52.381 4.39 0.00 37.74 3.02
4274 4982 2.032680 TTGGGCCATACGCTTAAGTC 57.967 50.000 7.26 0.00 37.74 3.01
4275 4983 2.297701 CATTGGGCCATACGCTTAAGT 58.702 47.619 7.26 0.00 37.74 2.24
4276 4984 2.290641 GACATTGGGCCATACGCTTAAG 59.709 50.000 7.26 0.00 37.74 1.85
4277 4985 2.294074 GACATTGGGCCATACGCTTAA 58.706 47.619 7.26 0.00 37.74 1.85
4279 4987 0.034574 TGACATTGGGCCATACGCTT 60.035 50.000 7.26 0.00 37.74 4.68
4281 4989 0.748005 AGTGACATTGGGCCATACGC 60.748 55.000 7.26 6.15 0.00 4.42
4282 4990 1.016627 CAGTGACATTGGGCCATACG 58.983 55.000 7.26 0.66 0.00 3.06
4283 4991 2.292267 CTCAGTGACATTGGGCCATAC 58.708 52.381 7.26 2.06 0.00 2.39
4284 4992 1.915489 ACTCAGTGACATTGGGCCATA 59.085 47.619 7.26 0.00 0.00 2.74
4285 4993 0.700564 ACTCAGTGACATTGGGCCAT 59.299 50.000 7.26 0.00 0.00 4.40
4286 4994 0.250858 CACTCAGTGACATTGGGCCA 60.251 55.000 0.00 0.00 35.23 5.36
4287 4995 0.036732 TCACTCAGTGACATTGGGCC 59.963 55.000 2.36 0.00 37.67 5.80
4288 4996 1.741706 CATCACTCAGTGACATTGGGC 59.258 52.381 10.48 0.00 45.65 5.36
4293 5045 0.107993 CCGCCATCACTCAGTGACAT 60.108 55.000 10.48 0.00 45.65 3.06
4412 5166 2.887783 TGGTCGGCTTTTTCTGCAAATA 59.112 40.909 0.00 0.00 0.00 1.40
4416 5170 0.465460 AGTGGTCGGCTTTTTCTGCA 60.465 50.000 0.00 0.00 0.00 4.41
4418 5172 1.308998 ACAGTGGTCGGCTTTTTCTG 58.691 50.000 0.00 0.00 0.00 3.02
4419 5173 2.104281 AGTACAGTGGTCGGCTTTTTCT 59.896 45.455 0.00 0.00 0.00 2.52
4429 5183 5.561145 CGCATCTATGAGTAGTACAGTGGTC 60.561 48.000 2.52 0.00 0.00 4.02
4482 5236 1.043673 ATGGAGTGGCTAGACCGGTC 61.044 60.000 27.67 27.67 43.94 4.79
4503 5258 8.648557 TCCATATTAGACATTCGAACTTGAAG 57.351 34.615 0.00 0.00 0.00 3.02
4599 5356 1.265635 CTTCGCGACCATGGTTTTTCA 59.734 47.619 20.85 2.80 0.00 2.69
4600 5357 1.265905 ACTTCGCGACCATGGTTTTTC 59.734 47.619 20.85 4.89 0.00 2.29
4607 5364 1.126846 GTTTGAGACTTCGCGACCATG 59.873 52.381 9.15 1.75 0.00 3.66
4616 5373 1.202604 TGGTCGTGGGTTTGAGACTTC 60.203 52.381 0.00 0.00 34.34 3.01
4655 5412 3.611766 AAAGATTGTAGTGGCTAGCGT 57.388 42.857 9.00 0.00 0.00 5.07
4657 5414 3.802685 CCGTAAAGATTGTAGTGGCTAGC 59.197 47.826 6.04 6.04 0.00 3.42
4679 5436 6.801575 TGTAGGATGTCTCAAAAACAAAACC 58.198 36.000 0.00 0.00 0.00 3.27
4680 5437 8.871686 ATTGTAGGATGTCTCAAAAACAAAAC 57.128 30.769 0.00 0.00 0.00 2.43
4691 5448 9.178427 GTACACGTAAATATTGTAGGATGTCTC 57.822 37.037 0.00 0.00 0.00 3.36
4706 5463 8.766000 TCAATTGTAGATGTGTACACGTAAAT 57.234 30.769 20.49 14.16 32.53 1.40
4708 5465 9.857957 TTATCAATTGTAGATGTGTACACGTAA 57.142 29.630 20.49 11.59 32.53 3.18
4711 5468 9.636965 CAATTATCAATTGTAGATGTGTACACG 57.363 33.333 20.61 2.95 42.53 4.49
4735 7165 9.793259 CCTTTATCTCTAATACATTAAGGCCAA 57.207 33.333 5.01 0.00 0.00 4.52
4738 7924 8.722394 GCACCTTTATCTCTAATACATTAAGGC 58.278 37.037 0.00 0.00 32.01 4.35
4742 7928 8.418662 ACGTGCACCTTTATCTCTAATACATTA 58.581 33.333 12.15 0.00 0.00 1.90
4749 7935 3.441222 TCGACGTGCACCTTTATCTCTAA 59.559 43.478 12.15 0.00 0.00 2.10
4754 7940 0.645868 GCTCGACGTGCACCTTTATC 59.354 55.000 16.41 0.59 0.00 1.75
4755 7941 0.246635 AGCTCGACGTGCACCTTTAT 59.753 50.000 22.36 0.00 0.00 1.40
4756 7942 0.666274 CAGCTCGACGTGCACCTTTA 60.666 55.000 22.36 0.00 0.00 1.85
4765 7951 2.949451 AGATCATTTCAGCTCGACGT 57.051 45.000 0.00 0.00 0.00 4.34
4766 7952 3.304257 CCTAGATCATTTCAGCTCGACG 58.696 50.000 0.00 0.00 0.00 5.12
4781 7967 1.341156 GGGCTGCACTGACCCTAGAT 61.341 60.000 0.50 0.00 40.75 1.98
4827 8013 9.120538 ACTTATAATTTGCATACTACCAACTGG 57.879 33.333 0.00 0.00 42.17 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.