Multiple sequence alignment - TraesCS5B01G246500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G246500 chr5B 100.000 6600 0 0 1 6600 428120321 428126920 0.000000e+00 12189
1 TraesCS5B01G246500 chr5D 95.342 5861 185 41 1 5835 362391869 362397667 0.000000e+00 9230
2 TraesCS5B01G246500 chr5D 89.809 471 28 5 6017 6469 362397664 362398132 2.650000e-163 586
3 TraesCS5B01G246500 chr5D 97.368 190 5 0 5833 6022 130661325 130661514 2.300000e-84 324
4 TraesCS5B01G246500 chr5D 95.939 197 6 2 5833 6029 121102662 121102468 1.070000e-82 318
5 TraesCS5B01G246500 chr5D 95.025 201 7 3 5834 6033 139129650 139129452 4.970000e-81 313
6 TraesCS5B01G246500 chr5A 97.047 3894 85 14 1956 5835 463057949 463061826 0.000000e+00 6527
7 TraesCS5B01G246500 chr5A 93.598 1968 91 19 1 1957 463055923 463057866 0.000000e+00 2904
8 TraesCS5B01G246500 chr5A 86.022 465 37 11 6020 6469 463061830 463062281 2.150000e-129 473
9 TraesCS5B01G246500 chr5A 97.354 189 5 0 5833 6021 604911866 604912054 8.260000e-84 322
10 TraesCS5B01G246500 chr5A 94.776 134 5 2 6469 6600 2396543 2396410 2.410000e-49 207
11 TraesCS5B01G246500 chr2B 80.160 1003 145 29 3841 4822 687822352 687823321 0.000000e+00 701
12 TraesCS5B01G246500 chr2B 97.744 133 2 1 6469 6600 795056465 795056333 1.850000e-55 228
13 TraesCS5B01G246500 chr4A 78.049 1025 148 47 3844 4833 601724587 601723605 5.740000e-160 575
14 TraesCS5B01G246500 chr6D 97.906 191 4 0 5831 6021 201987439 201987249 1.370000e-86 331
15 TraesCS5B01G246500 chr6D 94.737 133 7 0 6468 6600 451070624 451070492 2.410000e-49 207
16 TraesCS5B01G246500 chr4B 98.907 183 2 0 5834 6016 429085478 429085296 1.770000e-85 327
17 TraesCS5B01G246500 chr1D 97.861 187 4 0 5833 6019 176953156 176952970 2.300000e-84 324
18 TraesCS5B01G246500 chr1D 94.161 137 5 3 6466 6600 420567781 420567916 8.680000e-49 206
19 TraesCS5B01G246500 chr2D 96.859 191 6 0 5831 6021 389280414 389280224 2.970000e-83 320
20 TraesCS5B01G246500 chr3D 91.111 225 11 8 5833 6053 100392596 100392377 5.000000e-76 296
21 TraesCS5B01G246500 chr3D 94.815 135 5 2 6467 6600 478948438 478948305 6.710000e-50 209
22 TraesCS5B01G246500 chr7D 94.815 135 5 2 6467 6600 27472701 27472834 6.710000e-50 209
23 TraesCS5B01G246500 chr7D 93.478 138 7 2 6464 6600 574707397 574707261 3.120000e-48 204
24 TraesCS5B01G246500 chr6B 94.776 134 6 1 6468 6600 575637788 575637921 2.410000e-49 207
25 TraesCS5B01G246500 chr1B 94.815 135 4 3 6468 6600 191011841 191011708 2.410000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G246500 chr5B 428120321 428126920 6599 False 12189.000000 12189 100.000000 1 6600 1 chr5B.!!$F1 6599
1 TraesCS5B01G246500 chr5D 362391869 362398132 6263 False 4908.000000 9230 92.575500 1 6469 2 chr5D.!!$F2 6468
2 TraesCS5B01G246500 chr5A 463055923 463062281 6358 False 3301.333333 6527 92.222333 1 6469 3 chr5A.!!$F2 6468
3 TraesCS5B01G246500 chr2B 687822352 687823321 969 False 701.000000 701 80.160000 3841 4822 1 chr2B.!!$F1 981
4 TraesCS5B01G246500 chr4A 601723605 601724587 982 True 575.000000 575 78.049000 3844 4833 1 chr4A.!!$R1 989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 230 0.028770 TTTGTTCGGTCTGCGCAAAG 59.971 50.000 13.05 0.0 0.0 2.77 F
1988 2097 0.392863 CATGCTGGGTTCCGTGATCA 60.393 55.000 0.00 0.0 0.0 2.92 F
3096 3208 0.883833 CTTGTGTGCCCATCCTTCAC 59.116 55.000 0.00 0.0 0.0 3.18 F
3676 3789 4.035112 TCCCGGGTATGTCAGACTAAATT 58.965 43.478 22.86 0.0 0.0 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1995 2104 0.110486 ATTTGACTGGAACCGGTGCT 59.890 50.000 13.69 0.0 35.39 4.40 R
3628 3741 1.000396 GCTCAACCAAGCCCCTCAT 60.000 57.895 0.00 0.0 36.22 2.90 R
4085 4209 5.100259 CCTGCATATCAGAAAAACAGCAAG 58.900 41.667 0.00 0.0 45.72 4.01 R
5604 5790 3.508840 GAATGCCCCCGAGCGTTG 61.509 66.667 4.54 0.0 41.99 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 147 7.649057 TCGCTTTCTCTTCGAGATTTCATATA 58.351 34.615 0.00 0.00 38.56 0.86
163 167 0.872388 CTGTAGTTTTGTCCGTGCCC 59.128 55.000 0.00 0.00 0.00 5.36
192 196 3.067883 TCCTGAGATTGAGATGAGAAGCG 59.932 47.826 0.00 0.00 0.00 4.68
194 198 4.039151 TGAGATTGAGATGAGAAGCGAC 57.961 45.455 0.00 0.00 0.00 5.19
195 199 3.445096 TGAGATTGAGATGAGAAGCGACA 59.555 43.478 0.00 0.00 0.00 4.35
226 230 0.028770 TTTGTTCGGTCTGCGCAAAG 59.971 50.000 13.05 0.00 0.00 2.77
241 245 2.096218 CGCAAAGTGGAGTTTAGCTGAC 60.096 50.000 0.00 0.00 0.00 3.51
301 305 5.859648 GCTTCCGTACTCTAGCTGATAAATC 59.140 44.000 0.00 0.00 0.00 2.17
303 307 6.954487 TCCGTACTCTAGCTGATAAATCAA 57.046 37.500 0.00 0.00 36.18 2.57
304 308 7.526142 TCCGTACTCTAGCTGATAAATCAAT 57.474 36.000 0.00 0.00 36.18 2.57
374 379 6.899393 TGGTTCAGATTATTTTCTGCAACT 57.101 33.333 0.00 0.00 42.37 3.16
394 399 4.104831 ACTACAGACTCCCAATTAGGCTT 58.895 43.478 0.00 0.00 35.39 4.35
407 412 9.930158 TCCCAATTAGGCTTATACTGTTTTATT 57.070 29.630 0.00 0.00 35.39 1.40
429 434 9.522804 TTATTTTAACACCGAATCATTATTGGC 57.477 29.630 0.00 0.00 0.00 4.52
430 435 6.767524 TTTAACACCGAATCATTATTGGCT 57.232 33.333 0.00 0.00 0.00 4.75
466 471 2.379226 AGTGGTACTCCTACTGACCAGT 59.621 50.000 7.86 7.86 42.54 4.00
470 475 4.784838 TGGTACTCCTACTGACCAGTACTA 59.215 45.833 5.82 0.07 42.54 1.82
471 476 5.122519 GGTACTCCTACTGACCAGTACTAC 58.877 50.000 5.82 4.30 42.54 2.73
472 477 4.923516 ACTCCTACTGACCAGTACTACA 57.076 45.455 5.82 0.00 42.54 2.74
473 478 5.453866 ACTCCTACTGACCAGTACTACAT 57.546 43.478 5.82 0.00 42.54 2.29
541 546 7.977853 AGTTACATATTGTCTTTACCTGGTACG 59.022 37.037 5.94 1.01 0.00 3.67
605 616 8.425577 TCTTTCTTTATTAATCTTCAGAGGCG 57.574 34.615 0.00 0.00 0.00 5.52
606 617 8.258007 TCTTTCTTTATTAATCTTCAGAGGCGA 58.742 33.333 0.00 0.00 0.00 5.54
607 618 8.964476 TTTCTTTATTAATCTTCAGAGGCGAT 57.036 30.769 0.00 0.00 0.00 4.58
608 619 7.953158 TCTTTATTAATCTTCAGAGGCGATG 57.047 36.000 0.00 0.00 0.00 3.84
609 620 6.425114 TCTTTATTAATCTTCAGAGGCGATGC 59.575 38.462 0.00 0.00 0.00 3.91
611 622 0.531532 AATCTTCAGAGGCGATGCGG 60.532 55.000 0.00 0.00 0.00 5.69
612 623 1.680522 ATCTTCAGAGGCGATGCGGT 61.681 55.000 0.00 0.00 0.00 5.68
613 624 1.035385 TCTTCAGAGGCGATGCGGTA 61.035 55.000 0.00 0.00 0.00 4.02
614 625 0.596083 CTTCAGAGGCGATGCGGTAG 60.596 60.000 0.00 0.00 0.00 3.18
615 626 2.016393 TTCAGAGGCGATGCGGTAGG 62.016 60.000 0.00 0.00 0.00 3.18
678 690 5.584551 AGGGAAATAGTTTGAGAAGTGGT 57.415 39.130 0.00 0.00 0.00 4.16
688 700 1.227853 AGAAGTGGTTCCACGTGGC 60.228 57.895 30.25 16.60 41.41 5.01
720 732 6.402456 TCAGAATGATACAGAGAGATGGTG 57.598 41.667 0.00 0.00 42.56 4.17
755 767 4.193865 CACCACTGTCAGATCATATTGCA 58.806 43.478 6.91 0.00 0.00 4.08
761 773 2.225963 GTCAGATCATATTGCAGCCTGC 59.774 50.000 10.45 10.45 45.29 4.85
762 774 1.540267 CAGATCATATTGCAGCCTGCC 59.460 52.381 15.29 0.00 44.23 4.85
763 775 1.424302 AGATCATATTGCAGCCTGCCT 59.576 47.619 15.29 4.06 44.23 4.75
764 776 1.811359 GATCATATTGCAGCCTGCCTC 59.189 52.381 15.29 0.00 44.23 4.70
765 777 0.841961 TCATATTGCAGCCTGCCTCT 59.158 50.000 15.29 0.92 44.23 3.69
766 778 0.952280 CATATTGCAGCCTGCCTCTG 59.048 55.000 15.29 2.81 44.23 3.35
778 790 2.082231 CTGCCTCTGTCAAACCTCATG 58.918 52.381 0.00 0.00 0.00 3.07
811 823 2.311542 ACAAAATCATGGAGGGTGGCTA 59.688 45.455 0.00 0.00 0.00 3.93
814 826 3.979501 AATCATGGAGGGTGGCTAATT 57.020 42.857 0.00 0.00 0.00 1.40
895 907 6.263842 GCATTGACCATAAAGATGAATCTGGA 59.736 38.462 3.94 0.00 37.19 3.86
1078 1090 6.293298 CCATATGCTAGTTCAGTCTGAAATGC 60.293 42.308 22.51 21.43 38.22 3.56
1080 1092 3.999001 TGCTAGTTCAGTCTGAAATGCAG 59.001 43.478 22.51 14.88 46.31 4.41
1084 1096 2.105006 TCAGTCTGAAATGCAGCCTC 57.895 50.000 0.00 0.00 44.52 4.70
1096 1108 2.494059 TGCAGCCTCTTCTTGTGTAAC 58.506 47.619 0.00 0.00 37.35 2.50
1297 1310 7.739295 TCACTAAAGCAAATATCGACTTCAAC 58.261 34.615 0.00 0.00 0.00 3.18
1317 1330 7.766219 TCAACAATTAGTTACTATTCTCGGC 57.234 36.000 0.00 0.00 38.74 5.54
1345 1358 1.069227 GCTTGGCTGTACTTGTTTCCG 60.069 52.381 0.00 0.00 0.00 4.30
1399 1412 5.695851 AGAGATTTTGGATGTGACACAAC 57.304 39.130 13.23 10.02 0.00 3.32
1444 1457 8.403236 TGATTCTTGCATCTCACAATTATTCTG 58.597 33.333 0.00 0.00 0.00 3.02
1460 1473 9.933723 CAATTATTCTGGTTTCATTCCTCTTTT 57.066 29.630 0.00 0.00 0.00 2.27
1752 1772 8.029522 TGTAGAACTAACTCAGCTAAGTCAATG 58.970 37.037 0.00 0.00 0.00 2.82
1761 1781 8.792830 ACTCAGCTAAGTCAATGCTAAATAAA 57.207 30.769 0.00 0.00 35.05 1.40
1776 1796 8.755696 TGCTAAATAAAATGTGTCATTTCCAC 57.244 30.769 7.93 0.00 0.00 4.02
1782 1802 6.959639 AAAATGTGTCATTTCCACTGTACT 57.040 33.333 7.93 0.00 33.92 2.73
1791 1811 7.173218 TGTCATTTCCACTGTACTTGAATCTTC 59.827 37.037 0.00 0.00 0.00 2.87
1813 1833 9.453572 TCTTCCTGTACTCTACTTTAAATCGTA 57.546 33.333 0.00 0.00 0.00 3.43
1843 1863 3.096489 TGTTGATTTCTTGCAGTTGCC 57.904 42.857 1.06 0.00 41.18 4.52
1854 1874 5.439721 TCTTGCAGTTGCCTAATGATATGT 58.560 37.500 1.06 0.00 41.18 2.29
1873 1893 9.223099 TGATATGTGATGGCTAATATTTCTGTG 57.777 33.333 0.00 0.00 0.00 3.66
1876 1896 5.066375 TGTGATGGCTAATATTTCTGTGTGC 59.934 40.000 0.00 0.00 0.00 4.57
1970 2075 8.292444 AGTTGTTTGCTAGATATTAAATGGCA 57.708 30.769 0.00 0.00 0.00 4.92
1976 2081 5.416639 TGCTAGATATTAAATGGCATGCTGG 59.583 40.000 18.92 0.00 0.00 4.85
1988 2097 0.392863 CATGCTGGGTTCCGTGATCA 60.393 55.000 0.00 0.00 0.00 2.92
1995 2104 4.742440 GCTGGGTTCCGTGATCATTACATA 60.742 45.833 0.00 0.00 0.00 2.29
1996 2105 4.956085 TGGGTTCCGTGATCATTACATAG 58.044 43.478 0.00 0.00 0.00 2.23
1997 2106 3.746492 GGGTTCCGTGATCATTACATAGC 59.254 47.826 0.00 0.00 0.00 2.97
1998 2107 4.377021 GGTTCCGTGATCATTACATAGCA 58.623 43.478 0.00 0.00 0.00 3.49
1999 2108 4.211374 GGTTCCGTGATCATTACATAGCAC 59.789 45.833 0.00 0.00 0.00 4.40
2000 2109 3.990092 TCCGTGATCATTACATAGCACC 58.010 45.455 0.00 0.00 0.00 5.01
2018 2127 2.943033 CACCGGTTCCAGTCAAATATCC 59.057 50.000 2.97 0.00 0.00 2.59
2036 2145 3.795688 TCCATTCAAAAGTGGAGAGCT 57.204 42.857 0.00 0.00 39.51 4.09
2037 2146 3.415212 TCCATTCAAAAGTGGAGAGCTG 58.585 45.455 0.00 0.00 39.51 4.24
2039 2148 3.152341 CATTCAAAAGTGGAGAGCTGGT 58.848 45.455 0.00 0.00 0.00 4.00
2051 2160 2.291741 GAGAGCTGGTGTTTGTTGGAAG 59.708 50.000 0.00 0.00 0.00 3.46
2059 2168 4.339814 TGGTGTTTGTTGGAAGATTACCAC 59.660 41.667 0.00 0.00 37.13 4.16
2062 2171 5.298276 GTGTTTGTTGGAAGATTACCACTGA 59.702 40.000 0.00 0.00 37.13 3.41
2128 2237 7.649057 AGGTTTGCTTCTGAAATGTTACTAAC 58.351 34.615 0.00 0.00 0.00 2.34
2208 2317 7.184022 AGGAGTTACATTTCAGGTACCCTTTAT 59.816 37.037 8.74 0.00 0.00 1.40
2211 2320 9.054580 AGTTACATTTCAGGTACCCTTTATAGT 57.945 33.333 8.74 2.52 0.00 2.12
2213 2322 9.675464 TTACATTTCAGGTACCCTTTATAGTTG 57.325 33.333 8.74 0.00 0.00 3.16
2232 2341 6.642707 AGTTGCCTACTATCTCATACACTC 57.357 41.667 0.00 0.00 34.56 3.51
2239 2348 7.468906 GCCTACTATCTCATACACTCGTTCTTT 60.469 40.741 0.00 0.00 0.00 2.52
2240 2349 7.858382 CCTACTATCTCATACACTCGTTCTTTG 59.142 40.741 0.00 0.00 0.00 2.77
2256 2365 7.361127 TCGTTCTTTGTAAACACAACTTCAAA 58.639 30.769 0.00 0.00 0.00 2.69
2355 2464 6.879188 TTTTGATTCTTGGTTCGTTGAAAC 57.121 33.333 0.00 0.00 0.00 2.78
2438 2547 5.127682 AGGGCTGGCAAGTATTAAGATTTTG 59.872 40.000 2.88 0.00 0.00 2.44
2575 2684 9.357652 GTGCAACTGTAATTTTCAATATGACAT 57.642 29.630 0.00 0.00 0.00 3.06
2679 2788 6.822667 TGAATAATCAAGTGTCATGTTGCT 57.177 33.333 0.00 0.00 30.99 3.91
2697 2806 1.980844 GCTGCATTTTGTCATCGTGTG 59.019 47.619 0.00 0.00 0.00 3.82
2707 2816 3.253230 TGTCATCGTGTGCAATGTCTAG 58.747 45.455 0.00 0.00 0.00 2.43
2739 2848 9.931698 TCCTTTTTCTAGTCCATCTACTATGTA 57.068 33.333 0.00 0.00 31.70 2.29
2740 2849 9.968870 CCTTTTTCTAGTCCATCTACTATGTAC 57.031 37.037 0.00 0.00 31.70 2.90
2792 2901 4.978580 GCAGGAAGTTTGTTTAGCTTTCTG 59.021 41.667 7.29 7.29 44.53 3.02
2884 2996 3.579685 GCGGAGAACTGCTTTCCC 58.420 61.111 0.00 0.00 44.22 3.97
3007 3119 3.907474 TCAGGTATGTCCTTTCCTTGACA 59.093 43.478 0.00 0.00 45.67 3.58
3048 3160 6.884836 TCACTGTGAACTAGACTTCTGCTATA 59.115 38.462 8.27 0.00 0.00 1.31
3096 3208 0.883833 CTTGTGTGCCCATCCTTCAC 59.116 55.000 0.00 0.00 0.00 3.18
3628 3741 8.049117 ACTCTTGTAATTCCAGAGATATTTGCA 58.951 33.333 13.00 0.00 0.00 4.08
3676 3789 4.035112 TCCCGGGTATGTCAGACTAAATT 58.965 43.478 22.86 0.00 0.00 1.82
4005 4120 6.208204 ACTTCTCAAATTGCTCATGTTAAGCT 59.792 34.615 6.46 0.00 40.50 3.74
4085 4209 2.787129 GCAGAACTTGTTTGGTTAACGC 59.213 45.455 0.00 0.00 39.72 4.84
4688 4870 6.497606 GGTGCTAATCTAGTTTATCTACCCCT 59.502 42.308 0.00 0.00 0.00 4.79
5180 5362 8.450578 TTCGACATAAATCTGCCTGATTATTT 57.549 30.769 0.00 0.00 43.99 1.40
5359 5541 2.420642 CATCGCCACCCAATCATCTAG 58.579 52.381 0.00 0.00 0.00 2.43
5604 5790 4.481112 CAAATGCCCCTGACGCGC 62.481 66.667 5.73 0.00 0.00 6.86
5800 5986 1.139853 ACAGTATGCTGAAGCTAGCCC 59.860 52.381 18.40 4.28 45.28 5.19
5835 6021 6.978674 TGATAGTCTCCAAGGTGTTATAGG 57.021 41.667 0.00 0.00 0.00 2.57
5836 6022 5.839063 TGATAGTCTCCAAGGTGTTATAGGG 59.161 44.000 0.00 0.00 0.00 3.53
5837 6023 3.385115 AGTCTCCAAGGTGTTATAGGGG 58.615 50.000 0.00 0.00 0.00 4.79
5838 6024 2.438392 GTCTCCAAGGTGTTATAGGGGG 59.562 54.545 0.00 0.00 0.00 5.40
5839 6025 2.046729 TCTCCAAGGTGTTATAGGGGGT 59.953 50.000 0.00 0.00 0.00 4.95
5840 6026 2.172717 CTCCAAGGTGTTATAGGGGGTG 59.827 54.545 0.00 0.00 0.00 4.61
5841 6027 1.920351 CCAAGGTGTTATAGGGGGTGT 59.080 52.381 0.00 0.00 0.00 4.16
5842 6028 2.310647 CCAAGGTGTTATAGGGGGTGTT 59.689 50.000 0.00 0.00 0.00 3.32
5843 6029 3.245479 CCAAGGTGTTATAGGGGGTGTTT 60.245 47.826 0.00 0.00 0.00 2.83
5844 6030 3.732048 AGGTGTTATAGGGGGTGTTTG 57.268 47.619 0.00 0.00 0.00 2.93
5845 6031 2.310647 AGGTGTTATAGGGGGTGTTTGG 59.689 50.000 0.00 0.00 0.00 3.28
5846 6032 2.042026 GGTGTTATAGGGGGTGTTTGGT 59.958 50.000 0.00 0.00 0.00 3.67
5847 6033 3.500836 GGTGTTATAGGGGGTGTTTGGTT 60.501 47.826 0.00 0.00 0.00 3.67
5848 6034 4.154176 GTGTTATAGGGGGTGTTTGGTTT 58.846 43.478 0.00 0.00 0.00 3.27
5849 6035 5.323581 GTGTTATAGGGGGTGTTTGGTTTA 58.676 41.667 0.00 0.00 0.00 2.01
5850 6036 5.416639 GTGTTATAGGGGGTGTTTGGTTTAG 59.583 44.000 0.00 0.00 0.00 1.85
5851 6037 5.312708 TGTTATAGGGGGTGTTTGGTTTAGA 59.687 40.000 0.00 0.00 0.00 2.10
5852 6038 6.183361 TGTTATAGGGGGTGTTTGGTTTAGAA 60.183 38.462 0.00 0.00 0.00 2.10
5853 6039 3.238788 AGGGGGTGTTTGGTTTAGAAG 57.761 47.619 0.00 0.00 0.00 2.85
5854 6040 2.516702 AGGGGGTGTTTGGTTTAGAAGT 59.483 45.455 0.00 0.00 0.00 3.01
5855 6041 2.889045 GGGGGTGTTTGGTTTAGAAGTC 59.111 50.000 0.00 0.00 0.00 3.01
5856 6042 2.889045 GGGGTGTTTGGTTTAGAAGTCC 59.111 50.000 0.00 0.00 0.00 3.85
5857 6043 3.436035 GGGGTGTTTGGTTTAGAAGTCCT 60.436 47.826 0.00 0.00 0.00 3.85
5858 6044 4.202493 GGGGTGTTTGGTTTAGAAGTCCTA 60.202 45.833 0.00 0.00 0.00 2.94
5859 6045 5.001874 GGGTGTTTGGTTTAGAAGTCCTAG 58.998 45.833 0.00 0.00 0.00 3.02
5860 6046 5.001874 GGTGTTTGGTTTAGAAGTCCTAGG 58.998 45.833 0.82 0.82 0.00 3.02
5861 6047 5.221783 GGTGTTTGGTTTAGAAGTCCTAGGA 60.222 44.000 7.62 7.62 0.00 2.94
5862 6048 5.699915 GTGTTTGGTTTAGAAGTCCTAGGAC 59.300 44.000 31.29 31.29 44.86 3.85
5919 6105 7.696992 CTCTCCAGTAGAGTCTTTTTCTAGT 57.303 40.000 0.00 0.00 45.85 2.57
5920 6106 7.690952 TCTCCAGTAGAGTCTTTTTCTAGTC 57.309 40.000 0.00 0.00 43.71 2.59
5921 6107 6.660094 TCTCCAGTAGAGTCTTTTTCTAGTCC 59.340 42.308 0.00 0.00 43.71 3.85
5922 6108 5.715753 TCCAGTAGAGTCTTTTTCTAGTCCC 59.284 44.000 0.00 0.00 30.30 4.46
5923 6109 5.717654 CCAGTAGAGTCTTTTTCTAGTCCCT 59.282 44.000 0.00 0.00 30.30 4.20
5924 6110 6.350612 CCAGTAGAGTCTTTTTCTAGTCCCTG 60.351 46.154 0.00 0.00 30.30 4.45
5925 6111 6.209788 CAGTAGAGTCTTTTTCTAGTCCCTGT 59.790 42.308 0.00 0.00 30.30 4.00
5926 6112 7.393796 CAGTAGAGTCTTTTTCTAGTCCCTGTA 59.606 40.741 0.00 0.00 30.30 2.74
5927 6113 6.844097 AGAGTCTTTTTCTAGTCCCTGTAG 57.156 41.667 0.00 0.00 0.00 2.74
5928 6114 6.553857 AGAGTCTTTTTCTAGTCCCTGTAGA 58.446 40.000 0.00 0.00 0.00 2.59
5929 6115 7.011382 AGAGTCTTTTTCTAGTCCCTGTAGAA 58.989 38.462 0.00 0.00 35.21 2.10
5930 6116 7.509659 AGAGTCTTTTTCTAGTCCCTGTAGAAA 59.490 37.037 1.96 1.96 42.24 2.52
5936 6122 5.997384 TCTAGTCCCTGTAGAAAAAGTCC 57.003 43.478 0.00 0.00 0.00 3.85
5937 6123 4.776308 TCTAGTCCCTGTAGAAAAAGTCCC 59.224 45.833 0.00 0.00 0.00 4.46
5938 6124 3.599348 AGTCCCTGTAGAAAAAGTCCCT 58.401 45.455 0.00 0.00 0.00 4.20
5939 6125 3.583526 AGTCCCTGTAGAAAAAGTCCCTC 59.416 47.826 0.00 0.00 0.00 4.30
5940 6126 2.910977 TCCCTGTAGAAAAAGTCCCTCC 59.089 50.000 0.00 0.00 0.00 4.30
5941 6127 2.026169 CCCTGTAGAAAAAGTCCCTCCC 60.026 54.545 0.00 0.00 0.00 4.30
5942 6128 2.354805 CCTGTAGAAAAAGTCCCTCCCG 60.355 54.545 0.00 0.00 0.00 5.14
5943 6129 2.302157 CTGTAGAAAAAGTCCCTCCCGT 59.698 50.000 0.00 0.00 0.00 5.28
5944 6130 2.707257 TGTAGAAAAAGTCCCTCCCGTT 59.293 45.455 0.00 0.00 0.00 4.44
5945 6131 3.136992 TGTAGAAAAAGTCCCTCCCGTTT 59.863 43.478 0.00 0.00 0.00 3.60
5946 6132 2.583143 AGAAAAAGTCCCTCCCGTTTG 58.417 47.619 0.00 0.00 0.00 2.93
5947 6133 1.611977 GAAAAAGTCCCTCCCGTTTGG 59.388 52.381 0.00 0.00 0.00 3.28
5948 6134 0.554305 AAAAGTCCCTCCCGTTTGGT 59.446 50.000 0.00 0.00 34.77 3.67
5949 6135 0.554305 AAAGTCCCTCCCGTTTGGTT 59.446 50.000 0.00 0.00 34.77 3.67
5950 6136 0.554305 AAGTCCCTCCCGTTTGGTTT 59.446 50.000 0.00 0.00 34.77 3.27
5951 6137 0.109913 AGTCCCTCCCGTTTGGTTTC 59.890 55.000 0.00 0.00 34.77 2.78
5952 6138 0.109913 GTCCCTCCCGTTTGGTTTCT 59.890 55.000 0.00 0.00 34.77 2.52
5953 6139 1.348696 GTCCCTCCCGTTTGGTTTCTA 59.651 52.381 0.00 0.00 34.77 2.10
5954 6140 1.626825 TCCCTCCCGTTTGGTTTCTAG 59.373 52.381 0.00 0.00 34.77 2.43
5955 6141 1.339727 CCCTCCCGTTTGGTTTCTAGG 60.340 57.143 0.00 0.00 34.77 3.02
5956 6142 1.339727 CCTCCCGTTTGGTTTCTAGGG 60.340 57.143 0.00 0.00 40.16 3.53
5957 6143 1.626825 CTCCCGTTTGGTTTCTAGGGA 59.373 52.381 0.80 0.80 44.85 4.20
5958 6144 1.348696 TCCCGTTTGGTTTCTAGGGAC 59.651 52.381 0.00 0.00 42.46 4.46
5959 6145 1.350019 CCCGTTTGGTTTCTAGGGACT 59.650 52.381 0.00 0.00 41.26 3.85
5960 6146 2.224695 CCCGTTTGGTTTCTAGGGACTT 60.225 50.000 0.00 0.00 41.26 3.01
5961 6147 3.483421 CCGTTTGGTTTCTAGGGACTTT 58.517 45.455 0.00 0.00 41.75 2.66
5962 6148 3.887110 CCGTTTGGTTTCTAGGGACTTTT 59.113 43.478 0.00 0.00 41.75 2.27
5963 6149 4.340097 CCGTTTGGTTTCTAGGGACTTTTT 59.660 41.667 0.00 0.00 41.75 1.94
5964 6150 5.532032 CCGTTTGGTTTCTAGGGACTTTTTA 59.468 40.000 0.00 0.00 41.75 1.52
5965 6151 6.293790 CCGTTTGGTTTCTAGGGACTTTTTAG 60.294 42.308 0.00 0.00 41.75 1.85
5966 6152 6.293790 CGTTTGGTTTCTAGGGACTTTTTAGG 60.294 42.308 0.00 0.00 41.75 2.69
5967 6153 5.251182 TGGTTTCTAGGGACTTTTTAGGG 57.749 43.478 0.00 0.00 41.75 3.53
5968 6154 4.915194 TGGTTTCTAGGGACTTTTTAGGGA 59.085 41.667 0.00 0.00 41.75 4.20
5969 6155 5.221986 TGGTTTCTAGGGACTTTTTAGGGAC 60.222 44.000 0.00 0.00 41.75 4.46
5970 6156 5.013913 GGTTTCTAGGGACTTTTTAGGGACT 59.986 44.000 0.00 0.00 41.75 3.85
5971 6157 6.466904 GGTTTCTAGGGACTTTTTAGGGACTT 60.467 42.308 0.00 0.00 39.49 3.01
5972 6158 6.775234 TTCTAGGGACTTTTTAGGGACTTT 57.225 37.500 0.00 0.00 39.49 2.66
5973 6159 6.775234 TCTAGGGACTTTTTAGGGACTTTT 57.225 37.500 0.00 0.00 39.49 2.27
5974 6160 7.157947 TCTAGGGACTTTTTAGGGACTTTTT 57.842 36.000 0.00 0.00 39.49 1.94
5975 6161 7.229308 TCTAGGGACTTTTTAGGGACTTTTTC 58.771 38.462 0.00 0.00 39.49 2.29
5976 6162 6.027025 AGGGACTTTTTAGGGACTTTTTCT 57.973 37.500 0.00 0.00 34.75 2.52
5977 6163 7.157947 AGGGACTTTTTAGGGACTTTTTCTA 57.842 36.000 0.00 0.00 34.75 2.10
5978 6164 7.232188 AGGGACTTTTTAGGGACTTTTTCTAG 58.768 38.462 0.00 0.00 34.75 2.43
5979 6165 7.002879 GGGACTTTTTAGGGACTTTTTCTAGT 58.997 38.462 0.00 0.00 41.75 2.57
5980 6166 7.174599 GGGACTTTTTAGGGACTTTTTCTAGTC 59.825 40.741 0.00 0.00 43.05 2.59
5981 6167 7.937942 GGACTTTTTAGGGACTTTTTCTAGTCT 59.062 37.037 0.00 0.00 43.26 3.24
5982 6168 8.905660 ACTTTTTAGGGACTTTTTCTAGTCTC 57.094 34.615 0.00 0.00 44.42 3.36
5986 6172 4.209307 GGGACTTTTTCTAGTCTCTGGG 57.791 50.000 0.00 0.00 41.50 4.45
5987 6173 3.838903 GGGACTTTTTCTAGTCTCTGGGA 59.161 47.826 0.00 0.00 41.50 4.37
5988 6174 4.322877 GGGACTTTTTCTAGTCTCTGGGAC 60.323 50.000 0.00 0.00 41.50 4.46
6009 6195 5.828747 GACTAAAAAGTCCCTGAACCAAAC 58.171 41.667 0.00 0.00 32.97 2.93
6010 6196 5.265989 ACTAAAAAGTCCCTGAACCAAACA 58.734 37.500 0.00 0.00 0.00 2.83
6011 6197 4.465632 AAAAAGTCCCTGAACCAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
6012 6198 2.067365 AAGTCCCTGAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
6013 6199 0.923358 AGTCCCTGAACCAAACACCA 59.077 50.000 0.00 0.00 0.00 4.17
6014 6200 1.029681 GTCCCTGAACCAAACACCAC 58.970 55.000 0.00 0.00 0.00 4.16
6015 6201 0.106419 TCCCTGAACCAAACACCACC 60.106 55.000 0.00 0.00 0.00 4.61
6016 6202 0.396417 CCCTGAACCAAACACCACCA 60.396 55.000 0.00 0.00 0.00 4.17
6017 6203 1.703411 CCTGAACCAAACACCACCAT 58.297 50.000 0.00 0.00 0.00 3.55
6018 6204 2.489985 CCCTGAACCAAACACCACCATA 60.490 50.000 0.00 0.00 0.00 2.74
6019 6205 2.819608 CCTGAACCAAACACCACCATAG 59.180 50.000 0.00 0.00 0.00 2.23
6074 6264 1.136695 TGGTTTTGCTGCAAGGACAAG 59.863 47.619 23.25 0.00 29.42 3.16
6077 6267 2.057137 TTTGCTGCAAGGACAAGTCT 57.943 45.000 15.39 0.00 29.42 3.24
6083 6273 1.272490 TGCAAGGACAAGTCTACGGAG 59.728 52.381 0.00 0.00 0.00 4.63
6096 6286 2.161012 TCTACGGAGAGTTGTAACAGCG 59.839 50.000 0.00 0.00 0.00 5.18
6106 6296 7.360946 GGAGAGTTGTAACAGCGTCATTATTTT 60.361 37.037 0.00 0.00 0.00 1.82
6254 6446 6.033831 GCTTGAATGTGTATTTCGTGGAATTG 59.966 38.462 0.00 0.00 0.00 2.32
6264 6456 3.724508 TCGTGGAATTGTTTGCAATGT 57.275 38.095 0.00 0.00 43.89 2.71
6268 6460 5.460419 TCGTGGAATTGTTTGCAATGTTTAC 59.540 36.000 0.00 0.00 43.89 2.01
6274 6466 8.821894 GGAATTGTTTGCAATGTTTACTGTTTA 58.178 29.630 0.00 0.00 43.89 2.01
6303 6510 4.430423 GCGACGCTGCTGGTTTCG 62.430 66.667 13.73 0.00 0.00 3.46
6307 6514 2.664851 CGCTGCTGGTTTCGTGGA 60.665 61.111 0.00 0.00 0.00 4.02
6342 6550 2.627945 GTGGGAAATGTGTGCGATCTA 58.372 47.619 0.00 0.00 0.00 1.98
6478 6686 3.468780 GTCGAAACGGACGAGACTT 57.531 52.632 0.00 0.00 40.37 3.01
6479 6687 1.050767 GTCGAAACGGACGAGACTTG 58.949 55.000 0.00 0.00 40.37 3.16
6480 6688 0.662374 TCGAAACGGACGAGACTTGC 60.662 55.000 0.00 0.00 34.85 4.01
6481 6689 1.615107 CGAAACGGACGAGACTTGCC 61.615 60.000 0.00 0.00 0.00 4.52
6482 6690 0.319641 GAAACGGACGAGACTTGCCT 60.320 55.000 0.00 0.00 0.00 4.75
6483 6691 0.600255 AAACGGACGAGACTTGCCTG 60.600 55.000 0.00 0.00 0.00 4.85
6484 6692 2.811317 CGGACGAGACTTGCCTGC 60.811 66.667 0.00 0.00 0.00 4.85
6485 6693 2.659610 GGACGAGACTTGCCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
6486 6694 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
6487 6695 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
6488 6696 2.125350 CGAGACTTGCCTGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
6489 6697 2.654079 CGAGACTTGCCTGCTCCCT 61.654 63.158 0.00 0.00 0.00 4.20
6490 6698 1.220477 GAGACTTGCCTGCTCCCTC 59.780 63.158 0.00 0.00 0.00 4.30
6491 6699 1.229464 AGACTTGCCTGCTCCCTCT 60.229 57.895 0.00 0.00 0.00 3.69
6492 6700 1.220477 GACTTGCCTGCTCCCTCTC 59.780 63.158 0.00 0.00 0.00 3.20
6493 6701 2.250741 GACTTGCCTGCTCCCTCTCC 62.251 65.000 0.00 0.00 0.00 3.71
6494 6702 3.382803 CTTGCCTGCTCCCTCTCCG 62.383 68.421 0.00 0.00 0.00 4.63
6495 6703 4.704103 TGCCTGCTCCCTCTCCGT 62.704 66.667 0.00 0.00 0.00 4.69
6496 6704 4.154347 GCCTGCTCCCTCTCCGTG 62.154 72.222 0.00 0.00 0.00 4.94
6497 6705 4.154347 CCTGCTCCCTCTCCGTGC 62.154 72.222 0.00 0.00 0.00 5.34
6498 6706 3.073735 CTGCTCCCTCTCCGTGCT 61.074 66.667 0.00 0.00 0.00 4.40
6499 6707 3.071206 TGCTCCCTCTCCGTGCTC 61.071 66.667 0.00 0.00 0.00 4.26
6500 6708 3.844090 GCTCCCTCTCCGTGCTCC 61.844 72.222 0.00 0.00 0.00 4.70
6501 6709 3.151022 CTCCCTCTCCGTGCTCCC 61.151 72.222 0.00 0.00 0.00 4.30
6502 6710 3.965026 CTCCCTCTCCGTGCTCCCA 62.965 68.421 0.00 0.00 0.00 4.37
6503 6711 2.765807 CCCTCTCCGTGCTCCCAT 60.766 66.667 0.00 0.00 0.00 4.00
6504 6712 2.801631 CCCTCTCCGTGCTCCCATC 61.802 68.421 0.00 0.00 0.00 3.51
6505 6713 1.760086 CCTCTCCGTGCTCCCATCT 60.760 63.158 0.00 0.00 0.00 2.90
6506 6714 1.440893 CTCTCCGTGCTCCCATCTG 59.559 63.158 0.00 0.00 0.00 2.90
6507 6715 1.305297 TCTCCGTGCTCCCATCTGT 60.305 57.895 0.00 0.00 0.00 3.41
6508 6716 1.153489 CTCCGTGCTCCCATCTGTG 60.153 63.158 0.00 0.00 0.00 3.66
6509 6717 2.821366 CCGTGCTCCCATCTGTGC 60.821 66.667 0.00 0.00 0.00 4.57
6510 6718 2.267006 CGTGCTCCCATCTGTGCT 59.733 61.111 0.00 0.00 0.00 4.40
6511 6719 1.812922 CGTGCTCCCATCTGTGCTC 60.813 63.158 0.00 0.00 0.00 4.26
6512 6720 1.451028 GTGCTCCCATCTGTGCTCC 60.451 63.158 0.00 0.00 0.00 4.70
6513 6721 2.191641 GCTCCCATCTGTGCTCCC 59.808 66.667 0.00 0.00 0.00 4.30
6514 6722 2.503061 CTCCCATCTGTGCTCCCG 59.497 66.667 0.00 0.00 0.00 5.14
6515 6723 3.746949 CTCCCATCTGTGCTCCCGC 62.747 68.421 0.00 0.00 0.00 6.13
6517 6725 4.457496 CCATCTGTGCTCCCGCGT 62.457 66.667 4.92 0.00 39.65 6.01
6518 6726 2.494445 CATCTGTGCTCCCGCGTA 59.506 61.111 4.92 0.00 39.65 4.42
6519 6727 1.878522 CATCTGTGCTCCCGCGTAC 60.879 63.158 4.92 0.00 39.65 3.67
6520 6728 3.411418 ATCTGTGCTCCCGCGTACG 62.411 63.158 11.84 11.84 39.65 3.67
6521 6729 4.415332 CTGTGCTCCCGCGTACGT 62.415 66.667 17.90 0.00 39.65 3.57
6522 6730 4.710695 TGTGCTCCCGCGTACGTG 62.711 66.667 21.58 21.58 39.65 4.49
6526 6734 4.430765 CTCCCGCGTACGTGGCTT 62.431 66.667 36.56 0.00 43.94 4.35
6527 6735 4.728102 TCCCGCGTACGTGGCTTG 62.728 66.667 36.56 25.05 43.94 4.01
6528 6736 4.728102 CCCGCGTACGTGGCTTGA 62.728 66.667 36.56 0.00 43.94 3.02
6529 6737 2.508439 CCGCGTACGTGGCTTGAT 60.508 61.111 32.68 0.00 39.06 2.57
6530 6738 2.098233 CCGCGTACGTGGCTTGATT 61.098 57.895 32.68 0.00 39.06 2.57
6531 6739 1.632046 CCGCGTACGTGGCTTGATTT 61.632 55.000 32.68 0.00 39.06 2.17
6532 6740 0.518355 CGCGTACGTGGCTTGATTTG 60.518 55.000 20.84 0.00 33.53 2.32
6533 6741 0.793861 GCGTACGTGGCTTGATTTGA 59.206 50.000 17.90 0.00 0.00 2.69
6534 6742 1.396996 GCGTACGTGGCTTGATTTGAT 59.603 47.619 17.90 0.00 0.00 2.57
6535 6743 2.159572 GCGTACGTGGCTTGATTTGATT 60.160 45.455 17.90 0.00 0.00 2.57
6536 6744 3.416277 CGTACGTGGCTTGATTTGATTG 58.584 45.455 7.22 0.00 0.00 2.67
6537 6745 3.727673 CGTACGTGGCTTGATTTGATTGG 60.728 47.826 7.22 0.00 0.00 3.16
6538 6746 2.513753 ACGTGGCTTGATTTGATTGGA 58.486 42.857 0.00 0.00 0.00 3.53
6539 6747 2.890311 ACGTGGCTTGATTTGATTGGAA 59.110 40.909 0.00 0.00 0.00 3.53
6540 6748 3.057315 ACGTGGCTTGATTTGATTGGAAG 60.057 43.478 0.00 0.00 0.00 3.46
6541 6749 3.191162 CGTGGCTTGATTTGATTGGAAGA 59.809 43.478 0.00 0.00 0.00 2.87
6542 6750 4.321156 CGTGGCTTGATTTGATTGGAAGAA 60.321 41.667 0.00 0.00 0.00 2.52
6543 6751 5.540911 GTGGCTTGATTTGATTGGAAGAAA 58.459 37.500 0.00 0.00 0.00 2.52
6544 6752 5.990996 GTGGCTTGATTTGATTGGAAGAAAA 59.009 36.000 0.00 0.00 0.00 2.29
6545 6753 6.652062 GTGGCTTGATTTGATTGGAAGAAAAT 59.348 34.615 0.00 0.00 0.00 1.82
6546 6754 7.818930 GTGGCTTGATTTGATTGGAAGAAAATA 59.181 33.333 0.00 0.00 0.00 1.40
6547 6755 8.373981 TGGCTTGATTTGATTGGAAGAAAATAA 58.626 29.630 0.00 0.00 0.00 1.40
6548 6756 8.876790 GGCTTGATTTGATTGGAAGAAAATAAG 58.123 33.333 0.00 0.00 0.00 1.73
6549 6757 8.876790 GCTTGATTTGATTGGAAGAAAATAAGG 58.123 33.333 0.00 0.00 0.00 2.69
6550 6758 9.933723 CTTGATTTGATTGGAAGAAAATAAGGT 57.066 29.630 0.00 0.00 0.00 3.50
6551 6759 9.927668 TTGATTTGATTGGAAGAAAATAAGGTC 57.072 29.630 0.00 0.00 0.00 3.85
6552 6760 8.531146 TGATTTGATTGGAAGAAAATAAGGTCC 58.469 33.333 0.00 0.00 0.00 4.46
6553 6761 6.509418 TTGATTGGAAGAAAATAAGGTCCG 57.491 37.500 0.00 0.00 0.00 4.79
6554 6762 4.947388 TGATTGGAAGAAAATAAGGTCCGG 59.053 41.667 0.00 0.00 0.00 5.14
6555 6763 2.718563 TGGAAGAAAATAAGGTCCGGC 58.281 47.619 0.00 0.00 0.00 6.13
6556 6764 2.022195 GGAAGAAAATAAGGTCCGGCC 58.978 52.381 0.00 0.59 37.58 6.13
6557 6765 2.022195 GAAGAAAATAAGGTCCGGCCC 58.978 52.381 10.82 1.57 38.26 5.80
6558 6766 0.257905 AGAAAATAAGGTCCGGCCCC 59.742 55.000 0.00 0.00 38.26 5.80
6559 6767 0.033894 GAAAATAAGGTCCGGCCCCA 60.034 55.000 0.00 0.00 38.26 4.96
6560 6768 0.323999 AAAATAAGGTCCGGCCCCAC 60.324 55.000 0.00 0.00 38.26 4.61
6561 6769 2.219449 AAATAAGGTCCGGCCCCACC 62.219 60.000 9.45 9.45 38.26 4.61
6569 6777 4.293671 CGGCCCCACCCCTGAAAA 62.294 66.667 0.00 0.00 33.26 2.29
6570 6778 2.449777 GGCCCCACCCCTGAAAAT 59.550 61.111 0.00 0.00 0.00 1.82
6571 6779 1.685765 GGCCCCACCCCTGAAAATC 60.686 63.158 0.00 0.00 0.00 2.17
6572 6780 1.078347 GCCCCACCCCTGAAAATCA 59.922 57.895 0.00 0.00 0.00 2.57
6573 6781 0.972471 GCCCCACCCCTGAAAATCAG 60.972 60.000 0.32 0.32 43.91 2.90
6584 6792 3.818180 CTGAAAATCAGGAGGGGAGATG 58.182 50.000 0.00 0.00 40.71 2.90
6585 6793 3.457380 CTGAAAATCAGGAGGGGAGATGA 59.543 47.826 0.00 0.00 40.71 2.92
6586 6794 4.050037 TGAAAATCAGGAGGGGAGATGAT 58.950 43.478 0.00 0.00 33.91 2.45
6587 6795 4.479796 TGAAAATCAGGAGGGGAGATGATT 59.520 41.667 0.00 0.00 42.61 2.57
6588 6796 5.671735 TGAAAATCAGGAGGGGAGATGATTA 59.328 40.000 0.15 0.00 40.54 1.75
6589 6797 5.839517 AAATCAGGAGGGGAGATGATTAG 57.160 43.478 0.15 0.00 40.54 1.73
6590 6798 4.774243 ATCAGGAGGGGAGATGATTAGA 57.226 45.455 0.00 0.00 0.00 2.10
6591 6799 4.774243 TCAGGAGGGGAGATGATTAGAT 57.226 45.455 0.00 0.00 0.00 1.98
6592 6800 5.098575 TCAGGAGGGGAGATGATTAGATT 57.901 43.478 0.00 0.00 0.00 2.40
6593 6801 6.233045 TCAGGAGGGGAGATGATTAGATTA 57.767 41.667 0.00 0.00 0.00 1.75
6594 6802 6.259893 TCAGGAGGGGAGATGATTAGATTAG 58.740 44.000 0.00 0.00 0.00 1.73
6595 6803 6.047240 TCAGGAGGGGAGATGATTAGATTAGA 59.953 42.308 0.00 0.00 0.00 2.10
6596 6804 6.728164 CAGGAGGGGAGATGATTAGATTAGAA 59.272 42.308 0.00 0.00 0.00 2.10
6597 6805 7.236432 CAGGAGGGGAGATGATTAGATTAGAAA 59.764 40.741 0.00 0.00 0.00 2.52
6598 6806 7.796637 AGGAGGGGAGATGATTAGATTAGAAAA 59.203 37.037 0.00 0.00 0.00 2.29
6599 6807 8.100164 GGAGGGGAGATGATTAGATTAGAAAAG 58.900 40.741 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 147 1.589803 GGCACGGACAAAACTACAGT 58.410 50.000 0.00 0.00 0.00 3.55
153 157 0.608035 GGAATCAAAGGGCACGGACA 60.608 55.000 0.00 0.00 0.00 4.02
157 161 1.089920 CTCAGGAATCAAAGGGCACG 58.910 55.000 0.00 0.00 0.00 5.34
163 167 7.273712 TCTCATCTCAATCTCAGGAATCAAAG 58.726 38.462 0.00 0.00 0.00 2.77
192 196 1.281656 CAAAGAAACCGCCGGTGTC 59.718 57.895 18.95 18.95 40.12 3.67
194 198 0.317519 GAACAAAGAAACCGCCGGTG 60.318 55.000 10.80 8.42 35.34 4.94
195 199 1.778027 CGAACAAAGAAACCGCCGGT 61.778 55.000 1.02 1.02 37.65 5.28
226 230 3.027974 ACTTCGTCAGCTAAACTCCAC 57.972 47.619 0.00 0.00 0.00 4.02
241 245 1.931172 ACTTCGTCACCACAAACTTCG 59.069 47.619 0.00 0.00 0.00 3.79
248 252 6.071560 ACAATCTTATCTACTTCGTCACCACA 60.072 38.462 0.00 0.00 0.00 4.17
301 305 5.590104 TCGCATCCAAACGTCATATATTG 57.410 39.130 0.00 0.00 0.00 1.90
303 307 4.093408 GCATCGCATCCAAACGTCATATAT 59.907 41.667 0.00 0.00 0.00 0.86
304 308 3.431912 GCATCGCATCCAAACGTCATATA 59.568 43.478 0.00 0.00 0.00 0.86
314 318 0.377905 CGACATTGCATCGCATCCAA 59.622 50.000 0.00 0.00 38.76 3.53
374 379 7.015292 CAGTATAAGCCTAATTGGGAGTCTGTA 59.985 40.741 12.81 0.00 36.00 2.74
407 412 6.767524 AGCCAATAATGATTCGGTGTTAAA 57.232 33.333 0.00 0.00 0.00 1.52
441 446 3.693578 GGTCAGTAGGAGTACCACTGTAC 59.306 52.174 0.56 0.00 46.36 2.90
448 453 4.233632 AGTACTGGTCAGTAGGAGTACC 57.766 50.000 10.72 0.00 43.84 3.34
466 471 6.791867 AGGTGCATTAACTCTGATGTAGTA 57.208 37.500 0.00 0.00 0.00 1.82
470 475 5.423015 CAGTAGGTGCATTAACTCTGATGT 58.577 41.667 0.00 0.00 0.00 3.06
471 476 5.980698 CAGTAGGTGCATTAACTCTGATG 57.019 43.478 0.00 0.00 0.00 3.07
541 546 5.324784 CCTTAAGAAAGGCACCAAATACC 57.675 43.478 3.36 0.00 45.78 2.73
593 598 1.068753 CCGCATCGCCTCTGAAGAT 59.931 57.895 0.00 0.00 0.00 2.40
605 616 2.299297 ACCACTATAAGCCTACCGCATC 59.701 50.000 0.00 0.00 41.38 3.91
606 617 2.299297 GACCACTATAAGCCTACCGCAT 59.701 50.000 0.00 0.00 41.38 4.73
607 618 1.684983 GACCACTATAAGCCTACCGCA 59.315 52.381 0.00 0.00 41.38 5.69
608 619 1.000618 GGACCACTATAAGCCTACCGC 59.999 57.143 0.00 0.00 37.98 5.68
609 620 2.313317 TGGACCACTATAAGCCTACCG 58.687 52.381 0.00 0.00 0.00 4.02
611 622 5.402997 GGTATGGACCACTATAAGCCTAC 57.597 47.826 0.00 0.00 46.12 3.18
678 690 1.965930 GAGCATGTGCCACGTGGAA 60.966 57.895 38.30 27.35 43.38 3.53
688 700 5.598769 TCTGTATCATTCTGAGAGCATGTG 58.401 41.667 0.00 0.00 0.00 3.21
720 732 2.429930 TGGTGCCACTACCACTGC 59.570 61.111 0.00 0.00 45.46 4.40
741 753 2.501261 GCAGGCTGCAATATGATCTGA 58.499 47.619 33.33 0.00 44.26 3.27
755 767 1.073897 GGTTTGACAGAGGCAGGCT 59.926 57.895 0.00 0.00 0.00 4.58
761 773 2.304180 AGGTCATGAGGTTTGACAGAGG 59.696 50.000 0.00 0.00 44.22 3.69
762 774 3.260380 AGAGGTCATGAGGTTTGACAGAG 59.740 47.826 0.00 0.00 44.22 3.35
763 775 3.007290 CAGAGGTCATGAGGTTTGACAGA 59.993 47.826 0.00 0.00 44.22 3.41
764 776 3.244353 ACAGAGGTCATGAGGTTTGACAG 60.244 47.826 0.00 0.00 44.22 3.51
765 777 2.705658 ACAGAGGTCATGAGGTTTGACA 59.294 45.455 0.00 0.00 44.22 3.58
766 778 3.409026 ACAGAGGTCATGAGGTTTGAC 57.591 47.619 0.00 0.00 42.20 3.18
778 790 4.082571 CCATGATTTTGTCCAACAGAGGTC 60.083 45.833 0.00 0.00 0.00 3.85
1078 1090 6.108687 TCATATGTTACACAAGAAGAGGCTG 58.891 40.000 1.90 0.00 0.00 4.85
1080 1092 6.595716 AGTTCATATGTTACACAAGAAGAGGC 59.404 38.462 1.90 0.00 0.00 4.70
1134 1146 5.127194 AGTCACCTCTAATTGCTCGTATGAA 59.873 40.000 0.00 0.00 0.00 2.57
1248 1261 8.253810 TGAAGATTGGAGAGTTAAGACATACTG 58.746 37.037 0.00 0.00 0.00 2.74
1249 1262 8.254508 GTGAAGATTGGAGAGTTAAGACATACT 58.745 37.037 0.00 0.00 0.00 2.12
1250 1263 8.254508 AGTGAAGATTGGAGAGTTAAGACATAC 58.745 37.037 0.00 0.00 0.00 2.39
1251 1264 8.367660 AGTGAAGATTGGAGAGTTAAGACATA 57.632 34.615 0.00 0.00 0.00 2.29
1252 1265 7.251321 AGTGAAGATTGGAGAGTTAAGACAT 57.749 36.000 0.00 0.00 0.00 3.06
1297 1310 7.384387 GGGTTAGCCGAGAATAGTAACTAATTG 59.616 40.741 0.00 0.00 34.97 2.32
1399 1412 4.730600 TCACACACATCATTCGACAAAG 57.269 40.909 0.00 0.00 0.00 2.77
1536 1552 6.636454 TCAAGATGGTAGGTATTTCCAAGT 57.364 37.500 0.00 0.00 39.02 3.16
1725 1745 7.704578 TGACTTAGCTGAGTTAGTTCTACAT 57.295 36.000 13.01 0.00 0.00 2.29
1752 1772 8.863049 CAGTGGAAATGACACATTTTATTTAGC 58.137 33.333 10.35 0.00 41.21 3.09
1761 1781 6.061441 TCAAGTACAGTGGAAATGACACATT 58.939 36.000 0.00 0.00 41.21 2.71
1764 1784 6.428159 AGATTCAAGTACAGTGGAAATGACAC 59.572 38.462 0.00 0.00 34.17 3.67
1776 1796 7.164230 AGAGTACAGGAAGATTCAAGTACAG 57.836 40.000 19.77 0.00 39.41 2.74
1815 1835 9.146984 CAACTGCAAGAAATCAACAATTATCAT 57.853 29.630 0.00 0.00 37.43 2.45
1840 1860 4.645863 AGCCATCACATATCATTAGGCA 57.354 40.909 0.00 0.00 43.13 4.75
1854 1874 5.439721 AGCACACAGAAATATTAGCCATCA 58.560 37.500 0.00 0.00 0.00 3.07
1924 1945 6.509317 ACTACATGTTTCAAATTTTGCACG 57.491 33.333 2.30 0.00 0.00 5.34
1926 1947 7.840342 ACAACTACATGTTTCAAATTTTGCA 57.160 28.000 2.30 0.00 36.63 4.08
1970 2075 0.548031 ATGATCACGGAACCCAGCAT 59.452 50.000 0.00 0.00 0.00 3.79
1976 2081 4.211374 GTGCTATGTAATGATCACGGAACC 59.789 45.833 0.00 0.00 0.00 3.62
1988 2097 2.504175 ACTGGAACCGGTGCTATGTAAT 59.496 45.455 13.69 0.00 33.73 1.89
1995 2104 0.110486 ATTTGACTGGAACCGGTGCT 59.890 50.000 13.69 0.00 35.39 4.40
1996 2105 1.816074 TATTTGACTGGAACCGGTGC 58.184 50.000 8.52 5.63 35.39 5.01
1997 2106 2.943033 GGATATTTGACTGGAACCGGTG 59.057 50.000 8.52 0.00 35.39 4.94
1998 2107 2.574369 TGGATATTTGACTGGAACCGGT 59.426 45.455 0.00 0.00 38.41 5.28
1999 2108 3.275617 TGGATATTTGACTGGAACCGG 57.724 47.619 0.00 0.00 0.00 5.28
2000 2109 4.881273 TGAATGGATATTTGACTGGAACCG 59.119 41.667 0.00 0.00 0.00 4.44
2018 2127 3.057736 CACCAGCTCTCCACTTTTGAATG 60.058 47.826 0.00 0.00 0.00 2.67
2036 2145 4.339814 GTGGTAATCTTCCAACAAACACCA 59.660 41.667 0.00 0.00 36.68 4.17
2037 2146 4.583073 AGTGGTAATCTTCCAACAAACACC 59.417 41.667 0.00 0.00 36.68 4.16
2039 2148 5.298276 GTCAGTGGTAATCTTCCAACAAACA 59.702 40.000 0.00 0.00 36.68 2.83
2051 2160 8.668510 AATAAGTGATCATGTCAGTGGTAATC 57.331 34.615 0.00 0.00 39.61 1.75
2062 2171 7.118390 GGCGCTAAGATAAATAAGTGATCATGT 59.882 37.037 7.64 0.00 0.00 3.21
2128 2237 6.805713 AGAAACCTAAAACCATGTTGACAAG 58.194 36.000 0.00 0.00 0.00 3.16
2211 2320 5.131067 ACGAGTGTATGAGATAGTAGGCAA 58.869 41.667 0.00 0.00 0.00 4.52
2213 2322 5.470777 AGAACGAGTGTATGAGATAGTAGGC 59.529 44.000 0.00 0.00 0.00 3.93
2239 2348 8.091449 AGAAACCAATTTGAAGTTGTGTTTACA 58.909 29.630 14.72 0.00 33.85 2.41
2240 2349 8.474006 AGAAACCAATTTGAAGTTGTGTTTAC 57.526 30.769 14.72 10.83 33.85 2.01
2355 2464 8.936070 CCATATGATAACAAATATGGGCATTG 57.064 34.615 3.65 0.00 46.53 2.82
2388 2497 4.332828 ACAACCTGAACCTGCCTAATTAC 58.667 43.478 0.00 0.00 0.00 1.89
2679 2788 1.336125 TGCACACGATGACAAAATGCA 59.664 42.857 0.00 0.00 39.16 3.96
2697 2806 6.317391 AGAAAAAGGATAGCACTAGACATTGC 59.683 38.462 0.00 0.00 39.16 3.56
2707 2816 6.587273 AGATGGACTAGAAAAAGGATAGCAC 58.413 40.000 0.00 0.00 0.00 4.40
2744 2853 9.745323 GCTTTTAGCATCAACATGAAAATTAAC 57.255 29.630 0.00 0.00 41.89 2.01
2773 2882 5.743872 CCACACAGAAAGCTAAACAAACTTC 59.256 40.000 0.00 0.00 0.00 3.01
2780 2889 6.072112 TCATTTCCACACAGAAAGCTAAAC 57.928 37.500 0.00 0.00 39.04 2.01
3021 3133 4.551388 CAGAAGTCTAGTTCACAGTGACC 58.449 47.826 1.52 0.00 0.00 4.02
3088 3200 4.018141 TCATGTCCCAGAAATGTGAAGGAT 60.018 41.667 0.00 0.00 29.97 3.24
3096 3208 3.697542 TCTGCATTCATGTCCCAGAAATG 59.302 43.478 0.00 0.00 30.30 2.32
3628 3741 1.000396 GCTCAACCAAGCCCCTCAT 60.000 57.895 0.00 0.00 36.22 2.90
3676 3789 4.529769 TGTGCATGGAATTTATGGGTGAAA 59.470 37.500 0.00 0.00 0.00 2.69
4005 4120 9.710900 AATCGTATCAAGCACAATCTATAATCA 57.289 29.630 0.00 0.00 0.00 2.57
4085 4209 5.100259 CCTGCATATCAGAAAAACAGCAAG 58.900 41.667 0.00 0.00 45.72 4.01
4867 5049 8.149973 TGTTACAGAACTCCAAAGATTGTAAC 57.850 34.615 14.36 14.36 41.21 2.50
5359 5541 6.635755 AGACAAGAGTATGGTTTTAGCTCTC 58.364 40.000 0.00 0.00 35.72 3.20
5604 5790 3.508840 GAATGCCCCCGAGCGTTG 61.509 66.667 4.54 0.00 41.99 4.10
5685 5871 5.919707 TGAAAACGCGTCATGTTAAGTACTA 59.080 36.000 14.44 0.00 0.00 1.82
5686 5872 4.746115 TGAAAACGCGTCATGTTAAGTACT 59.254 37.500 14.44 0.00 0.00 2.73
5687 5873 4.837050 GTGAAAACGCGTCATGTTAAGTAC 59.163 41.667 14.44 0.00 0.00 2.73
5723 5909 1.691482 GGCCTACAGTCTATGACCCCA 60.691 57.143 0.00 0.00 32.18 4.96
5724 5910 1.049402 GGCCTACAGTCTATGACCCC 58.951 60.000 0.00 0.00 32.18 4.95
5800 5986 4.412199 TGGAGACTATCAAAACCTATGGGG 59.588 45.833 0.00 0.00 41.89 4.96
5835 6021 2.889045 GGACTTCTAAACCAAACACCCC 59.111 50.000 0.00 0.00 0.00 4.95
5836 6022 3.828921 AGGACTTCTAAACCAAACACCC 58.171 45.455 0.00 0.00 0.00 4.61
5837 6023 5.001874 CCTAGGACTTCTAAACCAAACACC 58.998 45.833 1.05 0.00 0.00 4.16
5838 6024 5.699915 GTCCTAGGACTTCTAAACCAAACAC 59.300 44.000 31.12 2.21 41.57 3.32
5839 6025 5.861727 GTCCTAGGACTTCTAAACCAAACA 58.138 41.667 31.12 0.00 41.57 2.83
5896 6082 6.660094 GGACTAGAAAAAGACTCTACTGGAGA 59.340 42.308 0.00 0.00 44.45 3.71
5897 6083 6.127563 GGGACTAGAAAAAGACTCTACTGGAG 60.128 46.154 0.00 0.00 46.87 3.86
5898 6084 5.715753 GGGACTAGAAAAAGACTCTACTGGA 59.284 44.000 0.00 0.00 0.00 3.86
5899 6085 5.717654 AGGGACTAGAAAAAGACTCTACTGG 59.282 44.000 0.00 0.00 36.02 4.00
5900 6086 6.209788 ACAGGGACTAGAAAAAGACTCTACTG 59.790 42.308 0.00 0.00 36.02 2.74
5901 6087 6.316513 ACAGGGACTAGAAAAAGACTCTACT 58.683 40.000 0.00 0.00 36.02 2.57
5902 6088 6.593268 ACAGGGACTAGAAAAAGACTCTAC 57.407 41.667 0.00 0.00 36.02 2.59
5903 6089 7.696981 TCTACAGGGACTAGAAAAAGACTCTA 58.303 38.462 0.00 0.00 36.02 2.43
5904 6090 6.553857 TCTACAGGGACTAGAAAAAGACTCT 58.446 40.000 0.00 0.00 36.02 3.24
5905 6091 6.837471 TCTACAGGGACTAGAAAAAGACTC 57.163 41.667 0.00 0.00 36.02 3.36
5906 6092 7.613551 TTTCTACAGGGACTAGAAAAAGACT 57.386 36.000 0.00 0.00 37.31 3.24
5907 6093 8.672823 TTTTTCTACAGGGACTAGAAAAAGAC 57.327 34.615 16.61 0.00 46.05 3.01
5911 6097 7.222161 GGACTTTTTCTACAGGGACTAGAAAA 58.778 38.462 0.00 8.58 43.60 2.29
5912 6098 6.239800 GGGACTTTTTCTACAGGGACTAGAAA 60.240 42.308 0.00 0.00 38.08 2.52
5913 6099 5.247792 GGGACTTTTTCTACAGGGACTAGAA 59.752 44.000 0.00 0.00 36.02 2.10
5914 6100 4.776308 GGGACTTTTTCTACAGGGACTAGA 59.224 45.833 0.00 0.00 36.02 2.43
5915 6101 4.778427 AGGGACTTTTTCTACAGGGACTAG 59.222 45.833 0.00 0.00 28.08 2.57
5916 6102 4.759953 AGGGACTTTTTCTACAGGGACTA 58.240 43.478 0.00 0.00 28.08 2.59
5917 6103 3.583526 GAGGGACTTTTTCTACAGGGACT 59.416 47.826 0.00 0.00 41.55 3.85
5918 6104 3.307550 GGAGGGACTTTTTCTACAGGGAC 60.308 52.174 0.00 0.00 41.55 4.46
5919 6105 2.910977 GGAGGGACTTTTTCTACAGGGA 59.089 50.000 0.00 0.00 41.55 4.20
5920 6106 2.026169 GGGAGGGACTTTTTCTACAGGG 60.026 54.545 0.00 0.00 41.55 4.45
5921 6107 2.354805 CGGGAGGGACTTTTTCTACAGG 60.355 54.545 0.00 0.00 41.55 4.00
5922 6108 2.302157 ACGGGAGGGACTTTTTCTACAG 59.698 50.000 0.00 0.00 41.55 2.74
5923 6109 2.332117 ACGGGAGGGACTTTTTCTACA 58.668 47.619 0.00 0.00 41.55 2.74
5924 6110 3.413846 AACGGGAGGGACTTTTTCTAC 57.586 47.619 0.00 0.00 41.55 2.59
5925 6111 3.497227 CCAAACGGGAGGGACTTTTTCTA 60.497 47.826 0.00 0.00 41.55 2.10
5926 6112 2.583143 CAAACGGGAGGGACTTTTTCT 58.417 47.619 0.00 0.00 41.55 2.52
5927 6113 1.611977 CCAAACGGGAGGGACTTTTTC 59.388 52.381 0.00 0.00 41.55 2.29
5928 6114 1.063492 ACCAAACGGGAGGGACTTTTT 60.063 47.619 0.00 0.00 41.55 1.94
5929 6115 0.554305 ACCAAACGGGAGGGACTTTT 59.446 50.000 0.00 0.00 41.55 2.27
5930 6116 0.554305 AACCAAACGGGAGGGACTTT 59.446 50.000 0.00 0.00 41.55 2.66
5931 6117 0.554305 AAACCAAACGGGAGGGACTT 59.446 50.000 0.00 0.00 41.55 3.01
5933 6119 0.109913 AGAAACCAAACGGGAGGGAC 59.890 55.000 0.00 0.00 41.15 4.46
5934 6120 1.626825 CTAGAAACCAAACGGGAGGGA 59.373 52.381 0.00 0.00 41.15 4.20
5935 6121 1.339727 CCTAGAAACCAAACGGGAGGG 60.340 57.143 0.00 0.00 41.15 4.30
5936 6122 1.339727 CCCTAGAAACCAAACGGGAGG 60.340 57.143 0.00 0.00 41.15 4.30
5937 6123 1.626825 TCCCTAGAAACCAAACGGGAG 59.373 52.381 0.00 0.00 41.15 4.30
5938 6124 1.348696 GTCCCTAGAAACCAAACGGGA 59.651 52.381 0.00 0.00 41.15 5.14
5939 6125 1.350019 AGTCCCTAGAAACCAAACGGG 59.650 52.381 0.00 0.00 44.81 5.28
5940 6126 2.853235 AGTCCCTAGAAACCAAACGG 57.147 50.000 0.00 0.00 0.00 4.44
5941 6127 5.509716 AAAAAGTCCCTAGAAACCAAACG 57.490 39.130 0.00 0.00 0.00 3.60
5942 6128 6.015688 CCCTAAAAAGTCCCTAGAAACCAAAC 60.016 42.308 0.00 0.00 0.00 2.93
5943 6129 6.072649 CCCTAAAAAGTCCCTAGAAACCAAA 58.927 40.000 0.00 0.00 0.00 3.28
5944 6130 5.373257 TCCCTAAAAAGTCCCTAGAAACCAA 59.627 40.000 0.00 0.00 0.00 3.67
5945 6131 4.915194 TCCCTAAAAAGTCCCTAGAAACCA 59.085 41.667 0.00 0.00 0.00 3.67
5946 6132 5.013913 AGTCCCTAAAAAGTCCCTAGAAACC 59.986 44.000 0.00 0.00 0.00 3.27
5947 6133 6.124316 AGTCCCTAAAAAGTCCCTAGAAAC 57.876 41.667 0.00 0.00 0.00 2.78
5948 6134 6.775234 AAGTCCCTAAAAAGTCCCTAGAAA 57.225 37.500 0.00 0.00 0.00 2.52
5949 6135 6.775234 AAAGTCCCTAAAAAGTCCCTAGAA 57.225 37.500 0.00 0.00 0.00 2.10
5950 6136 6.775234 AAAAGTCCCTAAAAAGTCCCTAGA 57.225 37.500 0.00 0.00 0.00 2.43
5951 6137 7.232188 AGAAAAAGTCCCTAAAAAGTCCCTAG 58.768 38.462 0.00 0.00 0.00 3.02
5952 6138 7.157947 AGAAAAAGTCCCTAAAAAGTCCCTA 57.842 36.000 0.00 0.00 0.00 3.53
5953 6139 6.027025 AGAAAAAGTCCCTAAAAAGTCCCT 57.973 37.500 0.00 0.00 0.00 4.20
5954 6140 7.002879 ACTAGAAAAAGTCCCTAAAAAGTCCC 58.997 38.462 0.00 0.00 0.00 4.46
5955 6141 7.937942 AGACTAGAAAAAGTCCCTAAAAAGTCC 59.062 37.037 0.00 0.00 45.86 3.85
5956 6142 8.905660 AGACTAGAAAAAGTCCCTAAAAAGTC 57.094 34.615 0.00 0.00 45.86 3.01
5957 6143 8.715842 AGAGACTAGAAAAAGTCCCTAAAAAGT 58.284 33.333 0.00 0.00 45.86 2.66
5958 6144 8.994170 CAGAGACTAGAAAAAGTCCCTAAAAAG 58.006 37.037 0.00 0.00 45.86 2.27
5959 6145 7.937394 CCAGAGACTAGAAAAAGTCCCTAAAAA 59.063 37.037 0.00 0.00 45.86 1.94
5960 6146 7.450903 CCAGAGACTAGAAAAAGTCCCTAAAA 58.549 38.462 0.00 0.00 45.86 1.52
5961 6147 6.013639 CCCAGAGACTAGAAAAAGTCCCTAAA 60.014 42.308 0.00 0.00 45.86 1.85
5962 6148 5.484290 CCCAGAGACTAGAAAAAGTCCCTAA 59.516 44.000 0.00 0.00 45.86 2.69
5963 6149 5.024118 CCCAGAGACTAGAAAAAGTCCCTA 58.976 45.833 0.00 0.00 45.86 3.53
5964 6150 3.841255 CCCAGAGACTAGAAAAAGTCCCT 59.159 47.826 0.00 0.00 45.86 4.20
5965 6151 3.838903 TCCCAGAGACTAGAAAAAGTCCC 59.161 47.826 0.00 0.00 45.86 4.46
5966 6152 4.823157 GTCCCAGAGACTAGAAAAAGTCC 58.177 47.826 0.00 0.00 45.86 3.85
5986 6172 5.358725 TGTTTGGTTCAGGGACTTTTTAGTC 59.641 40.000 0.00 0.00 34.60 2.59
5987 6173 5.126545 GTGTTTGGTTCAGGGACTTTTTAGT 59.873 40.000 0.00 0.00 34.60 2.24
5988 6174 5.451381 GGTGTTTGGTTCAGGGACTTTTTAG 60.451 44.000 0.00 0.00 34.60 1.85
5989 6175 4.403113 GGTGTTTGGTTCAGGGACTTTTTA 59.597 41.667 0.00 0.00 34.60 1.52
5990 6176 3.196901 GGTGTTTGGTTCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
5991 6177 2.764010 GGTGTTTGGTTCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
5992 6178 2.291930 TGGTGTTTGGTTCAGGGACTTT 60.292 45.455 0.00 0.00 34.60 2.66
5993 6179 1.286553 TGGTGTTTGGTTCAGGGACTT 59.713 47.619 0.00 0.00 34.60 3.01
5994 6180 0.923358 TGGTGTTTGGTTCAGGGACT 59.077 50.000 0.00 0.00 43.88 3.85
5995 6181 1.029681 GTGGTGTTTGGTTCAGGGAC 58.970 55.000 0.00 0.00 0.00 4.46
5996 6182 0.106419 GGTGGTGTTTGGTTCAGGGA 60.106 55.000 0.00 0.00 0.00 4.20
5997 6183 0.396417 TGGTGGTGTTTGGTTCAGGG 60.396 55.000 0.00 0.00 0.00 4.45
5998 6184 1.703411 ATGGTGGTGTTTGGTTCAGG 58.297 50.000 0.00 0.00 0.00 3.86
5999 6185 3.486383 ACTATGGTGGTGTTTGGTTCAG 58.514 45.455 0.00 0.00 0.00 3.02
6000 6186 3.586470 ACTATGGTGGTGTTTGGTTCA 57.414 42.857 0.00 0.00 0.00 3.18
6001 6187 5.354234 CAGATACTATGGTGGTGTTTGGTTC 59.646 44.000 0.00 0.00 0.00 3.62
6002 6188 5.222048 ACAGATACTATGGTGGTGTTTGGTT 60.222 40.000 0.00 0.00 0.00 3.67
6003 6189 4.288626 ACAGATACTATGGTGGTGTTTGGT 59.711 41.667 0.00 0.00 0.00 3.67
6004 6190 4.843728 ACAGATACTATGGTGGTGTTTGG 58.156 43.478 0.00 0.00 0.00 3.28
6005 6191 5.487433 TGACAGATACTATGGTGGTGTTTG 58.513 41.667 0.00 0.00 0.00 2.93
6006 6192 5.755409 TGACAGATACTATGGTGGTGTTT 57.245 39.130 0.00 0.00 0.00 2.83
6007 6193 5.957771 ATGACAGATACTATGGTGGTGTT 57.042 39.130 0.00 0.00 0.00 3.32
6008 6194 5.425217 TCAATGACAGATACTATGGTGGTGT 59.575 40.000 0.00 0.00 0.00 4.16
6009 6195 5.917462 TCAATGACAGATACTATGGTGGTG 58.083 41.667 0.00 0.00 0.00 4.17
6010 6196 6.753913 ATCAATGACAGATACTATGGTGGT 57.246 37.500 0.00 0.00 0.00 4.16
6011 6197 6.994496 ACAATCAATGACAGATACTATGGTGG 59.006 38.462 0.00 0.00 0.00 4.61
6012 6198 8.442632 AACAATCAATGACAGATACTATGGTG 57.557 34.615 0.00 0.00 0.00 4.17
6013 6199 8.896744 CAAACAATCAATGACAGATACTATGGT 58.103 33.333 0.00 0.00 0.00 3.55
6014 6200 7.859377 GCAAACAATCAATGACAGATACTATGG 59.141 37.037 0.00 0.00 0.00 2.74
6015 6201 8.400186 TGCAAACAATCAATGACAGATACTATG 58.600 33.333 0.00 0.00 0.00 2.23
6016 6202 8.510243 TGCAAACAATCAATGACAGATACTAT 57.490 30.769 0.00 0.00 0.00 2.12
6017 6203 7.920160 TGCAAACAATCAATGACAGATACTA 57.080 32.000 0.00 0.00 0.00 1.82
6018 6204 6.822667 TGCAAACAATCAATGACAGATACT 57.177 33.333 0.00 0.00 0.00 2.12
6019 6205 6.034256 GCTTGCAAACAATCAATGACAGATAC 59.966 38.462 0.00 0.00 34.61 2.24
6074 6264 3.500014 GCTGTTACAACTCTCCGTAGAC 58.500 50.000 0.00 0.00 0.00 2.59
6077 6267 1.881973 ACGCTGTTACAACTCTCCGTA 59.118 47.619 0.00 0.00 0.00 4.02
6106 6296 6.425417 TCACAGCAACAATTTTCGTGAGTATA 59.575 34.615 0.00 0.00 0.00 1.47
6254 6446 6.754675 ACCTGTAAACAGTAAACATTGCAAAC 59.245 34.615 1.71 0.00 42.27 2.93
6264 6456 4.710324 CTGGACCACCTGTAAACAGTAAA 58.290 43.478 9.17 0.00 42.27 2.01
6268 6460 1.523758 GCTGGACCACCTGTAAACAG 58.476 55.000 3.02 3.02 43.40 3.16
6274 6466 3.991051 CGTCGCTGGACCACCTGT 61.991 66.667 0.00 0.00 40.17 4.00
6285 6492 3.044305 GAAACCAGCAGCGTCGCT 61.044 61.111 15.47 15.47 45.21 4.93
6296 6503 3.639094 ACATTTTCCATTCCACGAAACCA 59.361 39.130 0.00 0.00 0.00 3.67
6303 6510 1.199097 ACGCGACATTTTCCATTCCAC 59.801 47.619 15.93 0.00 0.00 4.02
6307 6514 0.525761 CCCACGCGACATTTTCCATT 59.474 50.000 15.93 0.00 0.00 3.16
6463 6671 0.319641 AGGCAAGTCTCGTCCGTTTC 60.320 55.000 0.00 0.00 0.00 2.78
6469 6677 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
6470 6678 2.659610 GGAGCAGGCAAGTCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
6471 6679 2.125350 GGGAGCAGGCAAGTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
6472 6680 1.220477 GAGGGAGCAGGCAAGTCTC 59.780 63.158 0.00 0.00 0.00 3.36
6473 6681 1.229464 AGAGGGAGCAGGCAAGTCT 60.229 57.895 0.00 0.00 0.00 3.24
6474 6682 1.220477 GAGAGGGAGCAGGCAAGTC 59.780 63.158 0.00 0.00 0.00 3.01
6475 6683 2.297129 GGAGAGGGAGCAGGCAAGT 61.297 63.158 0.00 0.00 0.00 3.16
6476 6684 2.588989 GGAGAGGGAGCAGGCAAG 59.411 66.667 0.00 0.00 0.00 4.01
6477 6685 3.393970 CGGAGAGGGAGCAGGCAA 61.394 66.667 0.00 0.00 0.00 4.52
6478 6686 4.704103 ACGGAGAGGGAGCAGGCA 62.704 66.667 0.00 0.00 0.00 4.75
6479 6687 4.154347 CACGGAGAGGGAGCAGGC 62.154 72.222 0.00 0.00 0.00 4.85
6480 6688 4.154347 GCACGGAGAGGGAGCAGG 62.154 72.222 0.00 0.00 0.00 4.85
6481 6689 3.073735 AGCACGGAGAGGGAGCAG 61.074 66.667 0.00 0.00 0.00 4.24
6482 6690 3.071206 GAGCACGGAGAGGGAGCA 61.071 66.667 0.00 0.00 0.00 4.26
6483 6691 3.844090 GGAGCACGGAGAGGGAGC 61.844 72.222 0.00 0.00 0.00 4.70
6484 6692 3.151022 GGGAGCACGGAGAGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
6485 6693 3.317436 ATGGGAGCACGGAGAGGGA 62.317 63.158 0.00 0.00 0.00 4.20
6486 6694 2.765807 ATGGGAGCACGGAGAGGG 60.766 66.667 0.00 0.00 0.00 4.30
6487 6695 1.760086 AGATGGGAGCACGGAGAGG 60.760 63.158 0.00 0.00 0.00 3.69
6488 6696 1.326213 ACAGATGGGAGCACGGAGAG 61.326 60.000 0.00 0.00 0.00 3.20
6489 6697 1.305297 ACAGATGGGAGCACGGAGA 60.305 57.895 0.00 0.00 0.00 3.71
6490 6698 1.153489 CACAGATGGGAGCACGGAG 60.153 63.158 0.00 0.00 0.00 4.63
6491 6699 2.981302 CACAGATGGGAGCACGGA 59.019 61.111 0.00 0.00 0.00 4.69
6492 6700 2.821366 GCACAGATGGGAGCACGG 60.821 66.667 0.00 0.00 0.00 4.94
6493 6701 1.812922 GAGCACAGATGGGAGCACG 60.813 63.158 0.00 0.00 0.00 5.34
6494 6702 1.451028 GGAGCACAGATGGGAGCAC 60.451 63.158 0.00 0.00 0.00 4.40
6495 6703 2.673200 GGGAGCACAGATGGGAGCA 61.673 63.158 0.00 0.00 0.00 4.26
6496 6704 2.191641 GGGAGCACAGATGGGAGC 59.808 66.667 0.00 0.00 0.00 4.70
6497 6705 2.503061 CGGGAGCACAGATGGGAG 59.497 66.667 0.00 0.00 0.00 4.30
6509 6717 4.430765 AAGCCACGTACGCGGGAG 62.431 66.667 25.61 2.82 45.97 4.30
6510 6718 4.728102 CAAGCCACGTACGCGGGA 62.728 66.667 25.61 0.00 45.97 5.14
6511 6719 4.728102 TCAAGCCACGTACGCGGG 62.728 66.667 22.89 20.94 43.45 6.13
6512 6720 1.632046 AAATCAAGCCACGTACGCGG 61.632 55.000 17.94 17.94 43.45 6.46
6513 6721 0.518355 CAAATCAAGCCACGTACGCG 60.518 55.000 16.72 3.53 44.93 6.01
6514 6722 0.793861 TCAAATCAAGCCACGTACGC 59.206 50.000 16.72 0.00 0.00 4.42
6515 6723 3.416277 CAATCAAATCAAGCCACGTACG 58.584 45.455 15.01 15.01 0.00 3.67
6516 6724 3.438781 TCCAATCAAATCAAGCCACGTAC 59.561 43.478 0.00 0.00 0.00 3.67
6517 6725 3.680490 TCCAATCAAATCAAGCCACGTA 58.320 40.909 0.00 0.00 0.00 3.57
6518 6726 2.513753 TCCAATCAAATCAAGCCACGT 58.486 42.857 0.00 0.00 0.00 4.49
6519 6727 3.191162 TCTTCCAATCAAATCAAGCCACG 59.809 43.478 0.00 0.00 0.00 4.94
6520 6728 4.789012 TCTTCCAATCAAATCAAGCCAC 57.211 40.909 0.00 0.00 0.00 5.01
6521 6729 5.804944 TTTCTTCCAATCAAATCAAGCCA 57.195 34.783 0.00 0.00 0.00 4.75
6522 6730 8.776376 TTATTTTCTTCCAATCAAATCAAGCC 57.224 30.769 0.00 0.00 0.00 4.35
6523 6731 8.876790 CCTTATTTTCTTCCAATCAAATCAAGC 58.123 33.333 0.00 0.00 0.00 4.01
6524 6732 9.933723 ACCTTATTTTCTTCCAATCAAATCAAG 57.066 29.630 0.00 0.00 0.00 3.02
6525 6733 9.927668 GACCTTATTTTCTTCCAATCAAATCAA 57.072 29.630 0.00 0.00 0.00 2.57
6526 6734 8.531146 GGACCTTATTTTCTTCCAATCAAATCA 58.469 33.333 0.00 0.00 0.00 2.57
6527 6735 7.702348 CGGACCTTATTTTCTTCCAATCAAATC 59.298 37.037 0.00 0.00 0.00 2.17
6528 6736 7.363793 CCGGACCTTATTTTCTTCCAATCAAAT 60.364 37.037 0.00 0.00 0.00 2.32
6529 6737 6.071616 CCGGACCTTATTTTCTTCCAATCAAA 60.072 38.462 0.00 0.00 0.00 2.69
6530 6738 5.417580 CCGGACCTTATTTTCTTCCAATCAA 59.582 40.000 0.00 0.00 0.00 2.57
6531 6739 4.947388 CCGGACCTTATTTTCTTCCAATCA 59.053 41.667 0.00 0.00 0.00 2.57
6532 6740 4.202020 GCCGGACCTTATTTTCTTCCAATC 60.202 45.833 5.05 0.00 0.00 2.67
6533 6741 3.699538 GCCGGACCTTATTTTCTTCCAAT 59.300 43.478 5.05 0.00 0.00 3.16
6534 6742 3.086282 GCCGGACCTTATTTTCTTCCAA 58.914 45.455 5.05 0.00 0.00 3.53
6535 6743 2.619590 GGCCGGACCTTATTTTCTTCCA 60.620 50.000 5.05 0.00 34.51 3.53
6536 6744 2.022195 GGCCGGACCTTATTTTCTTCC 58.978 52.381 5.05 0.00 34.51 3.46
6537 6745 2.022195 GGGCCGGACCTTATTTTCTTC 58.978 52.381 23.07 0.00 39.10 2.87
6538 6746 1.341679 GGGGCCGGACCTTATTTTCTT 60.342 52.381 29.76 0.00 39.10 2.52
6539 6747 0.257905 GGGGCCGGACCTTATTTTCT 59.742 55.000 29.76 0.00 39.10 2.52
6540 6748 0.033894 TGGGGCCGGACCTTATTTTC 60.034 55.000 29.76 8.15 39.10 2.29
6541 6749 0.323999 GTGGGGCCGGACCTTATTTT 60.324 55.000 29.76 0.00 39.10 1.82
6542 6750 1.305287 GTGGGGCCGGACCTTATTT 59.695 57.895 29.76 0.00 39.10 1.40
6543 6751 2.686572 GGTGGGGCCGGACCTTATT 61.687 63.158 29.76 0.00 39.10 1.40
6544 6752 3.094498 GGTGGGGCCGGACCTTAT 61.094 66.667 29.76 0.00 39.10 1.73
6552 6760 3.600410 ATTTTCAGGGGTGGGGCCG 62.600 63.158 0.00 0.00 38.44 6.13
6553 6761 1.685765 GATTTTCAGGGGTGGGGCC 60.686 63.158 0.00 0.00 0.00 5.80
6554 6762 0.972471 CTGATTTTCAGGGGTGGGGC 60.972 60.000 0.00 0.00 40.71 5.80
6555 6763 3.288099 CTGATTTTCAGGGGTGGGG 57.712 57.895 0.00 0.00 40.71 4.96
6563 6771 3.457380 TCATCTCCCCTCCTGATTTTCAG 59.543 47.826 0.00 0.00 43.91 3.02
6564 6772 3.463825 TCATCTCCCCTCCTGATTTTCA 58.536 45.455 0.00 0.00 0.00 2.69
6565 6773 4.720775 ATCATCTCCCCTCCTGATTTTC 57.279 45.455 0.00 0.00 0.00 2.29
6566 6774 5.913534 TCTAATCATCTCCCCTCCTGATTTT 59.086 40.000 2.37 0.00 38.77 1.82
6567 6775 5.480710 TCTAATCATCTCCCCTCCTGATTT 58.519 41.667 2.37 0.00 38.77 2.17
6568 6776 5.098575 TCTAATCATCTCCCCTCCTGATT 57.901 43.478 0.00 0.00 40.44 2.57
6569 6777 4.774243 TCTAATCATCTCCCCTCCTGAT 57.226 45.455 0.00 0.00 0.00 2.90
6570 6778 4.774243 ATCTAATCATCTCCCCTCCTGA 57.226 45.455 0.00 0.00 0.00 3.86
6571 6779 6.259893 TCTAATCTAATCATCTCCCCTCCTG 58.740 44.000 0.00 0.00 0.00 3.86
6572 6780 6.491408 TCTAATCTAATCATCTCCCCTCCT 57.509 41.667 0.00 0.00 0.00 3.69
6573 6781 7.560796 TTTCTAATCTAATCATCTCCCCTCC 57.439 40.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.