Multiple sequence alignment - TraesCS5B01G245600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G245600 chr5B 100.000 3180 0 0 1 3180 426622769 426619590 0.000000e+00 5873.0
1 TraesCS5B01G245600 chr5B 97.209 215 6 0 11 225 468875323 468875109 6.480000e-97 364.0
2 TraesCS5B01G245600 chr5B 96.296 108 4 0 226 333 468875044 468874937 9.060000e-41 178.0
3 TraesCS5B01G245600 chr5D 92.557 2835 155 29 334 3126 361149841 361147021 0.000000e+00 4015.0
4 TraesCS5B01G245600 chr5D 90.336 238 16 5 2896 3127 361142688 361142452 3.990000e-79 305.0
5 TraesCS5B01G245600 chr5D 97.701 87 2 0 548 634 361142800 361142714 1.980000e-32 150.0
6 TraesCS5B01G245600 chr5D 86.232 138 12 5 44 175 371273905 371273769 3.310000e-30 143.0
7 TraesCS5B01G245600 chr5D 86.232 138 12 5 44 175 507876985 507877121 3.310000e-30 143.0
8 TraesCS5B01G245600 chr5A 91.317 2856 150 50 334 3128 461913339 461910521 0.000000e+00 3810.0
9 TraesCS5B01G245600 chr5A 95.349 86 3 1 253 338 44599459 44599375 5.530000e-28 135.0
10 TraesCS5B01G245600 chr1B 97.778 225 5 0 1 225 435188245 435188469 3.850000e-104 388.0
11 TraesCS5B01G245600 chr1B 95.181 83 4 0 251 333 435188549 435188631 7.160000e-27 132.0
12 TraesCS5B01G245600 chr4A 97.333 225 6 0 1 225 630901653 630901429 1.790000e-102 383.0
13 TraesCS5B01G245600 chr4A 98.795 83 1 0 251 333 630901350 630901268 7.110000e-32 148.0
14 TraesCS5B01G245600 chr3D 97.333 225 6 0 1 225 144759996 144759772 1.790000e-102 383.0
15 TraesCS5B01G245600 chr3D 96.444 225 7 1 1 225 565689198 565688975 1.390000e-98 370.0
16 TraesCS5B01G245600 chr3D 94.737 171 9 0 1738 1908 443602314 443602144 1.880000e-67 267.0
17 TraesCS5B01G245600 chr3D 93.103 145 10 0 1364 1508 443625515 443625371 2.480000e-51 213.0
18 TraesCS5B01G245600 chr3D 98.795 83 1 0 251 333 144759692 144759610 7.110000e-32 148.0
19 TraesCS5B01G245600 chr3D 96.970 66 2 0 251 316 565688895 565688830 9.320000e-21 111.0
20 TraesCS5B01G245600 chr6D 96.875 160 5 0 66 225 430313802 430313961 5.230000e-68 268.0
21 TraesCS5B01G245600 chr6D 98.765 81 1 0 253 333 430314043 430314123 9.190000e-31 145.0
22 TraesCS5B01G245600 chr6D 85.294 102 5 4 122 213 3826530 3826429 2.610000e-16 97.1
23 TraesCS5B01G245600 chr6D 100.000 39 0 0 1 39 430313766 430313804 4.400000e-09 73.1
24 TraesCS5B01G245600 chr2B 88.372 172 16 3 44 211 96969799 96969970 1.500000e-48 204.0
25 TraesCS5B01G245600 chr2D 95.062 81 4 0 253 333 10160395 10160315 9.260000e-26 128.0
26 TraesCS5B01G245600 chr1D 96.154 78 2 1 256 333 7701409 7701333 3.330000e-25 126.0
27 TraesCS5B01G245600 chr6B 82.143 140 8 9 87 213 704704076 704704211 1.560000e-18 104.0
28 TraesCS5B01G245600 chr7D 96.774 62 1 1 1738 1798 555876845 555876784 5.610000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G245600 chr5B 426619590 426622769 3179 True 5873 5873 100.000 1 3180 1 chr5B.!!$R1 3179
1 TraesCS5B01G245600 chr5D 361147021 361149841 2820 True 4015 4015 92.557 334 3126 1 chr5D.!!$R1 2792
2 TraesCS5B01G245600 chr5A 461910521 461913339 2818 True 3810 3810 91.317 334 3128 1 chr5A.!!$R2 2794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 220 0.035915 GGCTTCCCTCGCTTTCTTCT 60.036 55.0 0.0 0.0 0.0 2.85 F
255 256 0.039074 GATGGACGCCTGAGGTATCG 60.039 60.0 0.0 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 2064 0.316204 GCAAACAGTGGAGCAAGCAT 59.684 50.0 0.0 0.0 0.00 3.79 R
2230 2276 0.391263 ACCGATCTTTCGCCTTCACC 60.391 55.0 0.0 0.0 44.12 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.021898 AGTTCAATCAATTTCAGAAAAAGGGA 57.978 30.769 0.00 0.00 0.00 4.20
26 27 8.654094 AGTTCAATCAATTTCAGAAAAAGGGAT 58.346 29.630 0.00 0.00 0.00 3.85
27 28 8.715088 GTTCAATCAATTTCAGAAAAAGGGATG 58.285 33.333 0.00 0.00 0.00 3.51
28 29 6.875195 TCAATCAATTTCAGAAAAAGGGATGC 59.125 34.615 0.00 0.00 0.00 3.91
29 30 5.151297 TCAATTTCAGAAAAAGGGATGCC 57.849 39.130 0.00 0.00 0.00 4.40
30 31 4.020307 TCAATTTCAGAAAAAGGGATGCCC 60.020 41.667 0.00 0.00 45.90 5.36
44 45 1.604278 GATGCCCGATCCAAGTTTAGC 59.396 52.381 0.00 0.00 0.00 3.09
45 46 0.326595 TGCCCGATCCAAGTTTAGCA 59.673 50.000 0.00 0.00 0.00 3.49
46 47 1.017387 GCCCGATCCAAGTTTAGCAG 58.983 55.000 0.00 0.00 0.00 4.24
47 48 1.668419 CCCGATCCAAGTTTAGCAGG 58.332 55.000 0.00 0.00 0.00 4.85
48 49 1.017387 CCGATCCAAGTTTAGCAGGC 58.983 55.000 0.00 0.00 0.00 4.85
49 50 1.407437 CCGATCCAAGTTTAGCAGGCT 60.407 52.381 0.00 0.00 0.00 4.58
50 51 2.158957 CCGATCCAAGTTTAGCAGGCTA 60.159 50.000 0.00 0.00 0.00 3.93
51 52 2.866762 CGATCCAAGTTTAGCAGGCTAC 59.133 50.000 0.00 0.00 0.00 3.58
52 53 3.430929 CGATCCAAGTTTAGCAGGCTACT 60.431 47.826 0.00 0.00 0.00 2.57
53 54 4.518249 GATCCAAGTTTAGCAGGCTACTT 58.482 43.478 0.00 2.15 0.00 2.24
54 55 3.939066 TCCAAGTTTAGCAGGCTACTTC 58.061 45.455 6.50 0.00 0.00 3.01
55 56 3.583086 TCCAAGTTTAGCAGGCTACTTCT 59.417 43.478 6.50 1.29 0.00 2.85
56 57 4.041691 TCCAAGTTTAGCAGGCTACTTCTT 59.958 41.667 6.50 6.33 0.00 2.52
57 58 4.393371 CCAAGTTTAGCAGGCTACTTCTTC 59.607 45.833 6.50 0.00 0.00 2.87
58 59 4.209307 AGTTTAGCAGGCTACTTCTTCC 57.791 45.455 0.00 0.00 0.00 3.46
59 60 3.583086 AGTTTAGCAGGCTACTTCTTCCA 59.417 43.478 0.00 0.00 0.00 3.53
60 61 4.226168 AGTTTAGCAGGCTACTTCTTCCAT 59.774 41.667 0.00 0.00 0.00 3.41
61 62 2.998316 AGCAGGCTACTTCTTCCATC 57.002 50.000 0.00 0.00 0.00 3.51
62 63 1.488393 AGCAGGCTACTTCTTCCATCC 59.512 52.381 0.00 0.00 0.00 3.51
63 64 1.808133 GCAGGCTACTTCTTCCATCCG 60.808 57.143 0.00 0.00 0.00 4.18
64 65 1.757118 CAGGCTACTTCTTCCATCCGA 59.243 52.381 0.00 0.00 0.00 4.55
65 66 2.168521 CAGGCTACTTCTTCCATCCGAA 59.831 50.000 0.00 0.00 0.00 4.30
66 67 2.838202 AGGCTACTTCTTCCATCCGAAA 59.162 45.455 0.00 0.00 0.00 3.46
67 68 3.118592 AGGCTACTTCTTCCATCCGAAAG 60.119 47.826 0.00 0.00 0.00 2.62
68 69 3.118738 GGCTACTTCTTCCATCCGAAAGA 60.119 47.826 0.00 0.00 0.00 2.52
69 70 4.504858 GCTACTTCTTCCATCCGAAAGAA 58.495 43.478 0.00 0.00 0.00 2.52
70 71 4.330347 GCTACTTCTTCCATCCGAAAGAAC 59.670 45.833 0.00 0.00 0.00 3.01
71 72 4.625607 ACTTCTTCCATCCGAAAGAACT 57.374 40.909 0.00 0.00 0.00 3.01
72 73 5.740290 ACTTCTTCCATCCGAAAGAACTA 57.260 39.130 0.00 0.00 0.00 2.24
73 74 6.301169 ACTTCTTCCATCCGAAAGAACTAT 57.699 37.500 0.00 0.00 0.00 2.12
74 75 6.109359 ACTTCTTCCATCCGAAAGAACTATG 58.891 40.000 0.00 0.00 0.00 2.23
75 76 5.023533 TCTTCCATCCGAAAGAACTATGG 57.976 43.478 0.00 0.00 0.00 2.74
76 77 4.714802 TCTTCCATCCGAAAGAACTATGGA 59.285 41.667 0.00 0.00 35.21 3.41
77 78 4.672587 TCCATCCGAAAGAACTATGGAG 57.327 45.455 0.00 0.00 33.36 3.86
78 79 4.286707 TCCATCCGAAAGAACTATGGAGA 58.713 43.478 0.00 0.00 33.36 3.71
79 80 4.099573 TCCATCCGAAAGAACTATGGAGAC 59.900 45.833 0.00 0.00 33.36 3.36
80 81 4.100189 CCATCCGAAAGAACTATGGAGACT 59.900 45.833 0.00 0.00 31.10 3.24
81 82 5.395768 CCATCCGAAAGAACTATGGAGACTT 60.396 44.000 0.00 0.00 31.10 3.01
82 83 6.183360 CCATCCGAAAGAACTATGGAGACTTA 60.183 42.308 0.00 0.00 31.10 2.24
83 84 6.205101 TCCGAAAGAACTATGGAGACTTAC 57.795 41.667 0.00 0.00 0.00 2.34
84 85 5.035443 CCGAAAGAACTATGGAGACTTACG 58.965 45.833 0.00 0.00 0.00 3.18
85 86 5.392811 CCGAAAGAACTATGGAGACTTACGT 60.393 44.000 0.00 0.00 0.00 3.57
86 87 5.512082 CGAAAGAACTATGGAGACTTACGTG 59.488 44.000 0.00 0.00 0.00 4.49
87 88 6.585695 AAAGAACTATGGAGACTTACGTGA 57.414 37.500 0.00 0.00 0.00 4.35
88 89 5.821516 AGAACTATGGAGACTTACGTGAG 57.178 43.478 5.69 5.69 0.00 3.51
89 90 5.498393 AGAACTATGGAGACTTACGTGAGA 58.502 41.667 15.04 0.00 0.00 3.27
90 91 6.123651 AGAACTATGGAGACTTACGTGAGAT 58.876 40.000 15.04 1.83 0.00 2.75
91 92 6.261381 AGAACTATGGAGACTTACGTGAGATC 59.739 42.308 15.04 10.94 0.00 2.75
92 93 3.972950 ATGGAGACTTACGTGAGATCG 57.027 47.619 15.04 0.00 0.00 3.69
93 94 2.981898 TGGAGACTTACGTGAGATCGA 58.018 47.619 15.04 6.19 34.70 3.59
94 95 2.937149 TGGAGACTTACGTGAGATCGAG 59.063 50.000 15.04 0.00 34.70 4.04
95 96 3.196463 GGAGACTTACGTGAGATCGAGA 58.804 50.000 15.04 0.00 34.70 4.04
96 97 3.622163 GGAGACTTACGTGAGATCGAGAA 59.378 47.826 15.04 0.00 34.70 2.87
97 98 4.260456 GGAGACTTACGTGAGATCGAGAAG 60.260 50.000 15.04 0.66 35.37 2.85
98 99 3.064271 AGACTTACGTGAGATCGAGAAGC 59.936 47.826 15.04 0.00 33.93 3.86
99 100 2.747989 ACTTACGTGAGATCGAGAAGCA 59.252 45.455 15.04 0.00 33.93 3.91
100 101 3.181505 ACTTACGTGAGATCGAGAAGCAG 60.182 47.826 15.04 0.00 33.93 4.24
101 102 1.454201 ACGTGAGATCGAGAAGCAGA 58.546 50.000 0.00 0.00 34.70 4.26
102 103 1.400142 ACGTGAGATCGAGAAGCAGAG 59.600 52.381 0.00 0.00 34.70 3.35
103 104 1.838913 GTGAGATCGAGAAGCAGAGC 58.161 55.000 0.00 0.00 0.00 4.09
104 105 1.133982 GTGAGATCGAGAAGCAGAGCA 59.866 52.381 0.00 0.00 0.00 4.26
105 106 1.404748 TGAGATCGAGAAGCAGAGCAG 59.595 52.381 0.00 0.00 0.00 4.24
106 107 0.102844 AGATCGAGAAGCAGAGCAGC 59.897 55.000 0.00 0.00 0.00 5.25
107 108 0.875474 GATCGAGAAGCAGAGCAGCC 60.875 60.000 0.00 0.00 34.23 4.85
108 109 2.625973 ATCGAGAAGCAGAGCAGCCG 62.626 60.000 0.00 0.00 34.23 5.52
109 110 2.511145 GAGAAGCAGAGCAGCCGG 60.511 66.667 0.00 0.00 34.23 6.13
110 111 3.308014 GAGAAGCAGAGCAGCCGGT 62.308 63.158 1.90 0.00 34.23 5.28
111 112 2.817396 GAAGCAGAGCAGCCGGTC 60.817 66.667 1.90 0.00 40.07 4.79
112 113 4.749310 AAGCAGAGCAGCCGGTCG 62.749 66.667 1.90 0.00 44.60 4.79
130 131 3.483869 GGCGCCAGGGATCTCCTT 61.484 66.667 24.80 0.00 45.47 3.36
131 132 2.110006 GCGCCAGGGATCTCCTTC 59.890 66.667 0.00 0.00 45.47 3.46
132 133 2.825264 CGCCAGGGATCTCCTTCC 59.175 66.667 0.35 0.00 45.47 3.46
133 134 2.825264 GCCAGGGATCTCCTTCCG 59.175 66.667 0.35 0.00 45.47 4.30
134 135 1.762460 GCCAGGGATCTCCTTCCGA 60.762 63.158 0.35 0.00 45.47 4.55
135 136 1.124477 GCCAGGGATCTCCTTCCGAT 61.124 60.000 0.35 0.00 45.47 4.18
136 137 0.972883 CCAGGGATCTCCTTCCGATC 59.027 60.000 0.35 0.00 45.47 3.69
137 138 1.709578 CAGGGATCTCCTTCCGATCA 58.290 55.000 0.35 0.00 45.47 2.92
138 139 2.042464 CAGGGATCTCCTTCCGATCAA 58.958 52.381 0.35 0.00 45.47 2.57
139 140 2.043227 AGGGATCTCCTTCCGATCAAC 58.957 52.381 0.00 0.00 45.47 3.18
140 141 2.043227 GGGATCTCCTTCCGATCAACT 58.957 52.381 0.00 0.00 39.17 3.16
141 142 2.436173 GGGATCTCCTTCCGATCAACTT 59.564 50.000 0.00 0.00 39.17 2.66
142 143 3.118223 GGGATCTCCTTCCGATCAACTTT 60.118 47.826 0.00 0.00 39.17 2.66
143 144 3.873952 GGATCTCCTTCCGATCAACTTTG 59.126 47.826 0.00 0.00 39.17 2.77
144 145 3.334583 TCTCCTTCCGATCAACTTTGG 57.665 47.619 0.00 0.00 0.00 3.28
145 146 1.740025 CTCCTTCCGATCAACTTTGGC 59.260 52.381 0.00 0.00 0.00 4.52
146 147 0.447801 CCTTCCGATCAACTTTGGCG 59.552 55.000 0.00 0.00 0.00 5.69
147 148 0.179189 CTTCCGATCAACTTTGGCGC 60.179 55.000 0.00 0.00 0.00 6.53
148 149 1.582610 TTCCGATCAACTTTGGCGCC 61.583 55.000 22.73 22.73 0.00 6.53
149 150 2.098298 CGATCAACTTTGGCGCCG 59.902 61.111 23.90 10.49 0.00 6.46
150 151 2.677003 CGATCAACTTTGGCGCCGT 61.677 57.895 23.90 11.27 0.00 5.68
151 152 1.579429 GATCAACTTTGGCGCCGTT 59.421 52.632 23.90 17.21 0.00 4.44
152 153 0.039527 GATCAACTTTGGCGCCGTTT 60.040 50.000 23.90 8.96 0.00 3.60
153 154 0.039527 ATCAACTTTGGCGCCGTTTC 60.040 50.000 23.90 0.00 0.00 2.78
154 155 1.098712 TCAACTTTGGCGCCGTTTCT 61.099 50.000 23.90 2.67 0.00 2.52
155 156 0.934436 CAACTTTGGCGCCGTTTCTG 60.934 55.000 23.90 12.55 0.00 3.02
156 157 1.381165 AACTTTGGCGCCGTTTCTGT 61.381 50.000 23.90 11.51 0.00 3.41
157 158 0.533308 ACTTTGGCGCCGTTTCTGTA 60.533 50.000 23.90 0.00 0.00 2.74
158 159 0.110373 CTTTGGCGCCGTTTCTGTAC 60.110 55.000 23.90 0.00 0.00 2.90
159 160 0.533308 TTTGGCGCCGTTTCTGTACT 60.533 50.000 23.90 0.00 0.00 2.73
160 161 1.225376 TTGGCGCCGTTTCTGTACTG 61.225 55.000 23.90 0.00 0.00 2.74
161 162 2.474712 GCGCCGTTTCTGTACTGC 59.525 61.111 0.00 0.00 0.00 4.40
162 163 2.027625 GCGCCGTTTCTGTACTGCT 61.028 57.895 0.00 0.00 0.00 4.24
163 164 1.781555 CGCCGTTTCTGTACTGCTG 59.218 57.895 0.00 0.00 0.00 4.41
164 165 1.626654 CGCCGTTTCTGTACTGCTGG 61.627 60.000 0.00 0.00 0.00 4.85
165 166 1.912371 GCCGTTTCTGTACTGCTGGC 61.912 60.000 0.00 1.92 0.00 4.85
166 167 1.626654 CCGTTTCTGTACTGCTGGCG 61.627 60.000 0.00 0.00 0.00 5.69
167 168 1.497722 GTTTCTGTACTGCTGGCGC 59.502 57.895 0.00 0.00 0.00 6.53
168 169 1.671054 TTTCTGTACTGCTGGCGCC 60.671 57.895 22.73 22.73 34.43 6.53
169 170 2.111999 TTTCTGTACTGCTGGCGCCT 62.112 55.000 29.70 9.54 34.43 5.52
170 171 2.046892 CTGTACTGCTGGCGCCTT 60.047 61.111 29.70 9.11 34.43 4.35
171 172 1.672356 CTGTACTGCTGGCGCCTTT 60.672 57.895 29.70 9.48 34.43 3.11
172 173 1.228124 TGTACTGCTGGCGCCTTTT 60.228 52.632 29.70 9.87 34.43 2.27
173 174 0.821711 TGTACTGCTGGCGCCTTTTT 60.822 50.000 29.70 10.63 34.43 1.94
174 175 0.109735 GTACTGCTGGCGCCTTTTTC 60.110 55.000 29.70 12.13 34.43 2.29
175 176 0.250727 TACTGCTGGCGCCTTTTTCT 60.251 50.000 29.70 8.15 34.43 2.52
176 177 1.080974 CTGCTGGCGCCTTTTTCTG 60.081 57.895 29.70 11.51 34.43 3.02
177 178 1.799258 CTGCTGGCGCCTTTTTCTGT 61.799 55.000 29.70 0.00 34.43 3.41
178 179 1.372128 GCTGGCGCCTTTTTCTGTG 60.372 57.895 29.70 7.23 0.00 3.66
179 180 1.286880 CTGGCGCCTTTTTCTGTGG 59.713 57.895 29.70 0.93 0.00 4.17
180 181 2.049156 GGCGCCTTTTTCTGTGGC 60.049 61.111 22.15 0.00 42.94 5.01
181 182 2.049156 GCGCCTTTTTCTGTGGCC 60.049 61.111 0.00 0.00 43.42 5.36
182 183 2.564721 GCGCCTTTTTCTGTGGCCT 61.565 57.895 3.32 0.00 43.42 5.19
183 184 1.581447 CGCCTTTTTCTGTGGCCTC 59.419 57.895 3.32 0.00 43.42 4.70
184 185 0.890996 CGCCTTTTTCTGTGGCCTCT 60.891 55.000 3.32 0.00 43.42 3.69
185 186 0.884514 GCCTTTTTCTGTGGCCTCTC 59.115 55.000 3.32 0.00 40.71 3.20
186 187 1.160137 CCTTTTTCTGTGGCCTCTCG 58.840 55.000 3.32 0.00 0.00 4.04
187 188 0.519077 CTTTTTCTGTGGCCTCTCGC 59.481 55.000 3.32 0.00 0.00 5.03
188 189 1.227999 TTTTTCTGTGGCCTCTCGCG 61.228 55.000 3.32 0.00 38.94 5.87
189 190 4.742201 TTCTGTGGCCTCTCGCGC 62.742 66.667 3.32 0.00 38.94 6.86
195 196 3.056328 GGCCTCTCGCGCCTTTTT 61.056 61.111 0.00 0.00 43.48 1.94
196 197 2.481009 GCCTCTCGCGCCTTTTTC 59.519 61.111 0.00 0.00 0.00 2.29
197 198 3.040414 GCCTCTCGCGCCTTTTTCC 62.040 63.158 0.00 0.00 0.00 3.13
198 199 2.399356 CCTCTCGCGCCTTTTTCCC 61.399 63.158 0.00 0.00 0.00 3.97
199 200 1.376037 CTCTCGCGCCTTTTTCCCT 60.376 57.895 0.00 0.00 0.00 4.20
200 201 1.639298 CTCTCGCGCCTTTTTCCCTG 61.639 60.000 0.00 0.00 0.00 4.45
201 202 2.671619 TCGCGCCTTTTTCCCTGG 60.672 61.111 0.00 0.00 0.00 4.45
202 203 4.419939 CGCGCCTTTTTCCCTGGC 62.420 66.667 0.00 0.00 42.94 4.85
203 204 2.991540 GCGCCTTTTTCCCTGGCT 60.992 61.111 0.00 0.00 44.09 4.75
204 205 2.574018 GCGCCTTTTTCCCTGGCTT 61.574 57.895 0.00 0.00 44.09 4.35
205 206 1.586541 CGCCTTTTTCCCTGGCTTC 59.413 57.895 0.00 0.00 44.09 3.86
206 207 1.877576 CGCCTTTTTCCCTGGCTTCC 61.878 60.000 0.00 0.00 44.09 3.46
207 208 1.544825 GCCTTTTTCCCTGGCTTCCC 61.545 60.000 0.00 0.00 43.05 3.97
208 209 0.115152 CCTTTTTCCCTGGCTTCCCT 59.885 55.000 0.00 0.00 0.00 4.20
209 210 1.550327 CTTTTTCCCTGGCTTCCCTC 58.450 55.000 0.00 0.00 0.00 4.30
210 211 0.251165 TTTTTCCCTGGCTTCCCTCG 60.251 55.000 0.00 0.00 0.00 4.63
211 212 2.764637 TTTTCCCTGGCTTCCCTCGC 62.765 60.000 0.00 0.00 0.00 5.03
212 213 4.722535 TCCCTGGCTTCCCTCGCT 62.723 66.667 0.00 0.00 0.00 4.93
213 214 3.721706 CCCTGGCTTCCCTCGCTT 61.722 66.667 0.00 0.00 0.00 4.68
214 215 2.352805 CCTGGCTTCCCTCGCTTT 59.647 61.111 0.00 0.00 0.00 3.51
215 216 1.746991 CCTGGCTTCCCTCGCTTTC 60.747 63.158 0.00 0.00 0.00 2.62
216 217 1.298014 CTGGCTTCCCTCGCTTTCT 59.702 57.895 0.00 0.00 0.00 2.52
217 218 0.322008 CTGGCTTCCCTCGCTTTCTT 60.322 55.000 0.00 0.00 0.00 2.52
218 219 0.321653 TGGCTTCCCTCGCTTTCTTC 60.322 55.000 0.00 0.00 0.00 2.87
219 220 0.035915 GGCTTCCCTCGCTTTCTTCT 60.036 55.000 0.00 0.00 0.00 2.85
220 221 1.611936 GGCTTCCCTCGCTTTCTTCTT 60.612 52.381 0.00 0.00 0.00 2.52
221 222 1.466558 GCTTCCCTCGCTTTCTTCTTG 59.533 52.381 0.00 0.00 0.00 3.02
222 223 1.466558 CTTCCCTCGCTTTCTTCTTGC 59.533 52.381 0.00 0.00 0.00 4.01
223 224 0.687354 TCCCTCGCTTTCTTCTTGCT 59.313 50.000 0.00 0.00 0.00 3.91
224 225 1.899814 TCCCTCGCTTTCTTCTTGCTA 59.100 47.619 0.00 0.00 0.00 3.49
225 226 2.003301 CCCTCGCTTTCTTCTTGCTAC 58.997 52.381 0.00 0.00 0.00 3.58
226 227 2.354203 CCCTCGCTTTCTTCTTGCTACT 60.354 50.000 0.00 0.00 0.00 2.57
227 228 2.670414 CCTCGCTTTCTTCTTGCTACTG 59.330 50.000 0.00 0.00 0.00 2.74
228 229 3.321497 CTCGCTTTCTTCTTGCTACTGT 58.679 45.455 0.00 0.00 0.00 3.55
229 230 4.486090 CTCGCTTTCTTCTTGCTACTGTA 58.514 43.478 0.00 0.00 0.00 2.74
230 231 4.486090 TCGCTTTCTTCTTGCTACTGTAG 58.514 43.478 10.48 10.48 0.00 2.74
231 232 4.022242 TCGCTTTCTTCTTGCTACTGTAGT 60.022 41.667 15.71 0.00 0.00 2.73
232 233 4.686554 CGCTTTCTTCTTGCTACTGTAGTT 59.313 41.667 15.71 0.00 0.00 2.24
233 234 5.862323 CGCTTTCTTCTTGCTACTGTAGTTA 59.138 40.000 15.71 3.64 0.00 2.24
234 235 6.183359 CGCTTTCTTCTTGCTACTGTAGTTAC 60.183 42.308 15.71 0.90 0.00 2.50
235 236 6.869388 GCTTTCTTCTTGCTACTGTAGTTACT 59.131 38.462 15.71 0.00 0.00 2.24
236 237 7.148722 GCTTTCTTCTTGCTACTGTAGTTACTG 60.149 40.741 15.71 3.83 0.00 2.74
237 238 7.520451 TTCTTCTTGCTACTGTAGTTACTGA 57.480 36.000 15.71 5.81 0.00 3.41
238 239 7.704578 TCTTCTTGCTACTGTAGTTACTGAT 57.295 36.000 15.71 0.00 0.00 2.90
239 240 7.539436 TCTTCTTGCTACTGTAGTTACTGATG 58.461 38.462 15.71 9.50 0.00 3.07
240 241 6.208988 TCTTGCTACTGTAGTTACTGATGG 57.791 41.667 15.71 0.00 0.00 3.51
241 242 5.949952 TCTTGCTACTGTAGTTACTGATGGA 59.050 40.000 15.71 0.98 0.00 3.41
242 243 5.578005 TGCTACTGTAGTTACTGATGGAC 57.422 43.478 15.71 0.00 0.00 4.02
243 244 4.095932 TGCTACTGTAGTTACTGATGGACG 59.904 45.833 15.71 0.00 0.00 4.79
244 245 3.505464 ACTGTAGTTACTGATGGACGC 57.495 47.619 0.00 0.00 0.00 5.19
245 246 2.165845 ACTGTAGTTACTGATGGACGCC 59.834 50.000 0.00 0.00 0.00 5.68
246 247 2.427453 CTGTAGTTACTGATGGACGCCT 59.573 50.000 0.00 0.00 0.00 5.52
247 248 2.165641 TGTAGTTACTGATGGACGCCTG 59.834 50.000 0.00 0.00 0.00 4.85
248 249 1.557099 AGTTACTGATGGACGCCTGA 58.443 50.000 0.00 0.00 0.00 3.86
249 250 1.478510 AGTTACTGATGGACGCCTGAG 59.521 52.381 0.00 0.00 0.00 3.35
250 251 0.824109 TTACTGATGGACGCCTGAGG 59.176 55.000 0.00 0.00 0.00 3.86
251 252 0.324368 TACTGATGGACGCCTGAGGT 60.324 55.000 0.00 0.00 0.00 3.85
252 253 0.324368 ACTGATGGACGCCTGAGGTA 60.324 55.000 0.00 0.00 0.00 3.08
253 254 1.043816 CTGATGGACGCCTGAGGTAT 58.956 55.000 0.00 0.00 0.00 2.73
254 255 1.000283 CTGATGGACGCCTGAGGTATC 60.000 57.143 0.00 0.00 0.00 2.24
255 256 0.039074 GATGGACGCCTGAGGTATCG 60.039 60.000 0.00 0.00 0.00 2.92
256 257 0.755698 ATGGACGCCTGAGGTATCGT 60.756 55.000 0.00 0.50 37.92 3.73
257 258 0.968901 TGGACGCCTGAGGTATCGTT 60.969 55.000 0.00 0.00 35.12 3.85
258 259 0.527817 GGACGCCTGAGGTATCGTTG 60.528 60.000 0.00 0.00 35.12 4.10
259 260 0.527817 GACGCCTGAGGTATCGTTGG 60.528 60.000 0.00 0.00 35.12 3.77
260 261 0.968901 ACGCCTGAGGTATCGTTGGA 60.969 55.000 0.00 0.00 0.00 3.53
261 262 0.389391 CGCCTGAGGTATCGTTGGAT 59.611 55.000 0.00 0.00 36.65 3.41
262 263 1.869754 CGCCTGAGGTATCGTTGGATG 60.870 57.143 0.00 0.00 34.00 3.51
263 264 1.871080 CCTGAGGTATCGTTGGATGC 58.129 55.000 0.00 0.00 34.85 3.91
270 271 2.146342 GTATCGTTGGATGCCTGATGG 58.854 52.381 0.00 0.00 34.00 3.51
271 272 0.839277 ATCGTTGGATGCCTGATGGA 59.161 50.000 0.00 0.00 34.57 3.41
272 273 0.107703 TCGTTGGATGCCTGATGGAC 60.108 55.000 0.00 0.00 34.57 4.02
273 274 1.431488 CGTTGGATGCCTGATGGACG 61.431 60.000 0.00 0.00 34.57 4.79
274 275 1.097547 GTTGGATGCCTGATGGACGG 61.098 60.000 0.00 0.00 34.57 4.79
275 276 1.561769 TTGGATGCCTGATGGACGGT 61.562 55.000 0.00 0.00 34.57 4.83
276 277 1.524621 GGATGCCTGATGGACGGTG 60.525 63.158 0.00 0.00 34.57 4.94
277 278 2.124570 ATGCCTGATGGACGGTGC 60.125 61.111 0.00 0.00 34.57 5.01
278 279 2.874648 GATGCCTGATGGACGGTGCA 62.875 60.000 4.40 4.40 36.24 4.57
279 280 2.821366 GCCTGATGGACGGTGCAG 60.821 66.667 8.63 0.00 34.57 4.41
280 281 2.821366 CCTGATGGACGGTGCAGC 60.821 66.667 11.11 11.11 34.57 5.25
281 282 3.190849 CTGATGGACGGTGCAGCG 61.191 66.667 34.46 34.46 0.00 5.18
282 283 4.758251 TGATGGACGGTGCAGCGG 62.758 66.667 37.73 21.90 0.00 5.52
299 300 4.790861 GGAACGACGTCCCTCGGC 62.791 72.222 10.58 0.00 45.27 5.54
305 306 2.353958 ACGTCCCTCGGCAGTAGA 59.646 61.111 0.00 0.00 44.69 2.59
306 307 1.303888 ACGTCCCTCGGCAGTAGAA 60.304 57.895 0.00 0.00 44.69 2.10
307 308 1.139095 CGTCCCTCGGCAGTAGAAC 59.861 63.158 0.00 0.00 35.71 3.01
308 309 1.139095 GTCCCTCGGCAGTAGAACG 59.861 63.158 0.00 0.00 0.00 3.95
309 310 1.001764 TCCCTCGGCAGTAGAACGA 60.002 57.895 0.00 0.00 35.14 3.85
310 311 0.609957 TCCCTCGGCAGTAGAACGAA 60.610 55.000 0.00 0.00 36.08 3.85
311 312 0.458025 CCCTCGGCAGTAGAACGAAC 60.458 60.000 0.00 0.00 36.08 3.95
312 313 0.526662 CCTCGGCAGTAGAACGAACT 59.473 55.000 0.00 0.00 36.08 3.01
313 314 1.741706 CCTCGGCAGTAGAACGAACTA 59.258 52.381 0.00 0.00 36.08 2.24
314 315 2.163010 CCTCGGCAGTAGAACGAACTAA 59.837 50.000 0.00 0.00 36.08 2.24
315 316 3.427243 CTCGGCAGTAGAACGAACTAAG 58.573 50.000 0.00 0.00 36.08 2.18
316 317 2.816087 TCGGCAGTAGAACGAACTAAGT 59.184 45.455 0.00 0.00 33.21 2.24
317 318 3.120060 TCGGCAGTAGAACGAACTAAGTC 60.120 47.826 0.00 0.00 33.21 3.01
318 319 3.365666 CGGCAGTAGAACGAACTAAGTCA 60.366 47.826 0.00 0.00 0.00 3.41
319 320 4.167268 GGCAGTAGAACGAACTAAGTCAG 58.833 47.826 0.00 0.00 0.00 3.51
320 321 4.082895 GGCAGTAGAACGAACTAAGTCAGA 60.083 45.833 0.00 0.00 0.00 3.27
321 322 5.090083 GCAGTAGAACGAACTAAGTCAGAG 58.910 45.833 0.00 0.00 0.00 3.35
322 323 5.632959 CAGTAGAACGAACTAAGTCAGAGG 58.367 45.833 0.00 0.00 0.00 3.69
323 324 5.411977 CAGTAGAACGAACTAAGTCAGAGGA 59.588 44.000 0.00 0.00 0.00 3.71
324 325 6.094325 CAGTAGAACGAACTAAGTCAGAGGAT 59.906 42.308 0.00 0.00 0.00 3.24
325 326 5.570234 AGAACGAACTAAGTCAGAGGATC 57.430 43.478 0.00 0.00 0.00 3.36
360 361 1.913762 ACAGGTTCCCGGAGACAGG 60.914 63.158 0.73 0.00 0.00 4.00
369 370 1.890979 CGGAGACAGGCATGCCATC 60.891 63.158 37.18 30.97 38.92 3.51
399 400 2.436646 GTCACGGGGCAGATGTGG 60.437 66.667 0.00 0.00 34.43 4.17
499 508 2.663879 GCGAATGCCGACATGATCATTC 60.664 50.000 5.16 10.91 41.76 2.67
539 548 9.853555 TTTAATACCGAAAGTTGATTAGTACGA 57.146 29.630 0.00 0.00 0.00 3.43
550 559 7.159372 AGTTGATTAGTACGATGTGAGGTTTT 58.841 34.615 0.00 0.00 0.00 2.43
629 644 2.876368 GATGAAGAGGTGCCACCCCG 62.876 65.000 11.06 0.00 39.75 5.73
636 651 2.751688 GTGCCACCCCGGTAGAAA 59.248 61.111 0.00 0.00 36.97 2.52
643 658 1.051008 ACCCCGGTAGAAAAACGAGT 58.949 50.000 0.00 0.00 0.00 4.18
665 680 5.934043 AGTAATACCGTTGGACCAAAAGTAC 59.066 40.000 8.94 8.67 0.00 2.73
666 681 2.713863 ACCGTTGGACCAAAAGTACA 57.286 45.000 8.94 0.00 37.62 2.90
699 720 0.250124 TTTCTCGTGCCATTCGGTGT 60.250 50.000 0.00 0.00 33.28 4.16
702 723 0.389296 CTCGTGCCATTCGGTGTACA 60.389 55.000 0.00 0.00 33.28 2.90
733 754 0.969894 AAGTGTTGACCTCCTCCGAG 59.030 55.000 0.00 0.00 35.72 4.63
766 790 3.385111 AGGACAAGTTGACTCGTCTCTTT 59.615 43.478 10.54 0.00 0.00 2.52
776 800 2.559231 ACTCGTCTCTTTCTTCTCCCAC 59.441 50.000 0.00 0.00 0.00 4.61
813 842 4.814294 CGTACCGCTGGTCTGGGC 62.814 72.222 3.45 0.00 37.09 5.36
837 866 4.439305 TCCAAAGAAGCAAATTGATCGG 57.561 40.909 0.00 0.00 0.00 4.18
858 887 2.030401 CAAACCAATCCGACGGCGA 61.030 57.895 15.16 0.00 40.82 5.54
939 968 1.678970 GCTTCCTGCCAATTCCCGT 60.679 57.895 0.00 0.00 35.15 5.28
974 1013 1.964608 CTCTTCGCAGCTCCATCCCA 61.965 60.000 0.00 0.00 0.00 4.37
1987 2030 2.203294 GGTGGTCCGGCACAGTTT 60.203 61.111 13.33 0.00 0.00 2.66
2001 2044 2.734606 CACAGTTTCTTCGTGGCGATAA 59.265 45.455 0.00 0.00 35.23 1.75
2036 2079 0.393537 GCCTATGCTTGCTCCACTGT 60.394 55.000 0.00 0.00 33.53 3.55
2071 2114 5.964887 AACATTTGTTTGTCGTGGAAATG 57.035 34.783 0.00 0.00 39.08 2.32
2143 2186 3.586100 TGACCGTTTGATCGAAGATCA 57.414 42.857 8.48 8.48 45.12 2.92
2167 2213 3.305964 TCGAAGTAGAGCAACTTGTTCG 58.694 45.455 14.78 14.78 39.78 3.95
2230 2276 1.269174 AGATGAGAGCCGTGATGATCG 59.731 52.381 0.00 0.00 0.00 3.69
2312 2358 1.731709 GGAAAATGACATTTTGCCGCC 59.268 47.619 26.73 18.37 42.49 6.13
2355 2407 1.572717 CATGCAAATTACACGCGTTCG 59.427 47.619 10.22 0.71 42.43 3.95
2383 2435 7.413657 CGGATGTGGTACAAAATTAAGAATCGT 60.414 37.037 0.00 0.00 44.16 3.73
2411 2466 3.206150 ACCCATCATATCAAGCACGAAC 58.794 45.455 0.00 0.00 0.00 3.95
2414 2469 4.122046 CCATCATATCAAGCACGAACTCA 58.878 43.478 0.00 0.00 0.00 3.41
2498 2566 7.040132 TGCATGTAGTATAGAGAATGAGGTCAG 60.040 40.741 0.00 0.00 0.00 3.51
2503 2571 5.600484 AGTATAGAGAATGAGGTCAGTTGGG 59.400 44.000 0.00 0.00 0.00 4.12
2504 2572 2.625639 AGAGAATGAGGTCAGTTGGGT 58.374 47.619 0.00 0.00 0.00 4.51
2540 2608 2.965147 GCGCATCAAGCCACGTTGA 61.965 57.895 0.30 0.00 40.68 3.18
2610 2678 2.486203 TGGATTGCGTTTCGTAATGCTT 59.514 40.909 18.11 7.44 46.04 3.91
2620 2688 6.336392 CGTTTCGTAATGCTTTCTTTGTTTG 58.664 36.000 0.00 0.00 0.00 2.93
2640 2708 0.802494 CAAACTAAAGTCGGCGCCAT 59.198 50.000 28.98 8.88 0.00 4.40
2645 2713 2.495366 TAAAGTCGGCGCCATCACGT 62.495 55.000 28.98 14.77 34.88 4.49
2655 2723 4.181578 GGCGCCATCACGTATAGATTATT 58.818 43.478 24.80 0.00 34.88 1.40
2656 2724 5.345702 GGCGCCATCACGTATAGATTATTA 58.654 41.667 24.80 0.00 34.88 0.98
2657 2725 5.983720 GGCGCCATCACGTATAGATTATTAT 59.016 40.000 24.80 0.00 34.88 1.28
2754 2822 2.616376 CAAAACACACCATCTGTTCGGA 59.384 45.455 0.00 0.00 30.34 4.55
2854 2922 1.714899 CGGGAATGTCATGTTCGGCC 61.715 60.000 0.00 0.00 0.00 6.13
2856 2924 1.714899 GGAATGTCATGTTCGGCCCG 61.715 60.000 0.00 0.00 0.00 6.13
2881 2950 3.879892 GCAGTCAGGGAACTTGATTATCC 59.120 47.826 0.00 0.00 40.21 2.59
2884 2953 4.536090 AGTCAGGGAACTTGATTATCCACA 59.464 41.667 0.00 0.00 40.21 4.17
2904 2973 6.828273 TCCACATAAGGGACATAAATTGACAG 59.172 38.462 0.00 0.00 0.00 3.51
2926 2995 9.570488 GACAGAAAGTCGTCAGTTATAGTAATT 57.430 33.333 0.00 0.00 37.53 1.40
2953 3022 0.598065 GTGTGGTCATTTGTGAGGCC 59.402 55.000 0.00 0.00 0.00 5.19
2959 3028 1.973281 CATTTGTGAGGCCGTGGCT 60.973 57.895 11.25 0.00 42.48 4.75
2978 3049 1.211457 CTCAGGGATGAGGGAAAGTGG 59.789 57.143 0.00 0.00 32.56 4.00
2984 3055 2.023984 GGATGAGGGAAAGTGGGGAAAT 60.024 50.000 0.00 0.00 0.00 2.17
2995 3066 6.071896 GGAAAGTGGGGAAATTTAAGACTCAG 60.072 42.308 0.00 0.00 0.00 3.35
3002 3073 5.187772 GGGAAATTTAAGACTCAGGGCAAAT 59.812 40.000 0.00 0.00 0.00 2.32
3017 3088 4.475016 AGGGCAAATCTGAGTGGTACTAAT 59.525 41.667 0.00 0.00 0.00 1.73
3021 3092 6.183360 GGCAAATCTGAGTGGTACTAATGAAC 60.183 42.308 0.00 0.00 0.00 3.18
3022 3093 6.455646 GCAAATCTGAGTGGTACTAATGAACG 60.456 42.308 0.00 0.00 0.00 3.95
3026 3097 5.708697 TCTGAGTGGTACTAATGAACGAAGA 59.291 40.000 0.00 0.00 0.00 2.87
3077 3154 7.602753 TGTATATGTATATCCATCTATGCCGC 58.397 38.462 0.00 0.00 0.00 6.53
3135 3212 3.340814 CACATCCAGTGGCTAGACTTT 57.659 47.619 3.51 0.00 44.69 2.66
3136 3213 3.679389 CACATCCAGTGGCTAGACTTTT 58.321 45.455 3.51 0.00 44.69 2.27
3137 3214 3.438087 CACATCCAGTGGCTAGACTTTTG 59.562 47.826 3.51 0.00 44.69 2.44
3138 3215 2.185004 TCCAGTGGCTAGACTTTTGC 57.815 50.000 3.51 0.00 0.00 3.68
3139 3216 1.699634 TCCAGTGGCTAGACTTTTGCT 59.300 47.619 3.51 0.00 0.00 3.91
3140 3217 2.903784 TCCAGTGGCTAGACTTTTGCTA 59.096 45.455 3.51 0.00 0.00 3.49
3141 3218 3.326588 TCCAGTGGCTAGACTTTTGCTAA 59.673 43.478 3.51 0.00 0.00 3.09
3142 3219 3.686726 CCAGTGGCTAGACTTTTGCTAAG 59.313 47.826 0.00 0.00 0.00 2.18
3143 3220 3.126000 CAGTGGCTAGACTTTTGCTAAGC 59.874 47.826 0.00 0.00 0.00 3.09
3144 3221 3.008485 AGTGGCTAGACTTTTGCTAAGCT 59.992 43.478 0.00 0.00 0.00 3.74
3145 3222 3.372514 GTGGCTAGACTTTTGCTAAGCTC 59.627 47.826 0.00 0.00 0.00 4.09
3146 3223 3.261897 TGGCTAGACTTTTGCTAAGCTCT 59.738 43.478 0.00 5.00 0.00 4.09
3147 3224 4.257731 GGCTAGACTTTTGCTAAGCTCTT 58.742 43.478 0.00 0.00 0.00 2.85
3148 3225 4.331443 GGCTAGACTTTTGCTAAGCTCTTC 59.669 45.833 0.00 0.00 0.00 2.87
3149 3226 5.175127 GCTAGACTTTTGCTAAGCTCTTCT 58.825 41.667 0.00 0.00 0.00 2.85
3150 3227 6.334202 GCTAGACTTTTGCTAAGCTCTTCTA 58.666 40.000 0.00 0.40 0.00 2.10
3151 3228 6.254804 GCTAGACTTTTGCTAAGCTCTTCTAC 59.745 42.308 0.00 0.00 0.00 2.59
3152 3229 5.164954 AGACTTTTGCTAAGCTCTTCTACG 58.835 41.667 0.00 0.00 0.00 3.51
3153 3230 3.680458 ACTTTTGCTAAGCTCTTCTACGC 59.320 43.478 0.00 0.00 0.00 4.42
3154 3231 2.295253 TTGCTAAGCTCTTCTACGCC 57.705 50.000 0.00 0.00 0.00 5.68
3155 3232 1.182667 TGCTAAGCTCTTCTACGCCA 58.817 50.000 0.00 0.00 0.00 5.69
3156 3233 1.548719 TGCTAAGCTCTTCTACGCCAA 59.451 47.619 0.00 0.00 0.00 4.52
3157 3234 1.927838 GCTAAGCTCTTCTACGCCAAC 59.072 52.381 0.00 0.00 0.00 3.77
3158 3235 2.541556 CTAAGCTCTTCTACGCCAACC 58.458 52.381 0.00 0.00 0.00 3.77
3159 3236 0.685097 AAGCTCTTCTACGCCAACCA 59.315 50.000 0.00 0.00 0.00 3.67
3160 3237 0.037232 AGCTCTTCTACGCCAACCAC 60.037 55.000 0.00 0.00 0.00 4.16
3161 3238 0.320421 GCTCTTCTACGCCAACCACA 60.320 55.000 0.00 0.00 0.00 4.17
3162 3239 1.676014 GCTCTTCTACGCCAACCACAT 60.676 52.381 0.00 0.00 0.00 3.21
3163 3240 2.418197 GCTCTTCTACGCCAACCACATA 60.418 50.000 0.00 0.00 0.00 2.29
3164 3241 3.448686 CTCTTCTACGCCAACCACATAG 58.551 50.000 0.00 0.00 0.00 2.23
3165 3242 1.933853 CTTCTACGCCAACCACATAGC 59.066 52.381 0.00 0.00 0.00 2.97
3166 3243 0.899019 TCTACGCCAACCACATAGCA 59.101 50.000 0.00 0.00 0.00 3.49
3167 3244 1.484653 TCTACGCCAACCACATAGCAT 59.515 47.619 0.00 0.00 0.00 3.79
3168 3245 2.696187 TCTACGCCAACCACATAGCATA 59.304 45.455 0.00 0.00 0.00 3.14
3169 3246 1.953559 ACGCCAACCACATAGCATAG 58.046 50.000 0.00 0.00 0.00 2.23
3170 3247 1.229428 CGCCAACCACATAGCATAGG 58.771 55.000 0.00 0.00 0.00 2.57
3171 3248 1.475034 CGCCAACCACATAGCATAGGT 60.475 52.381 0.00 0.00 34.99 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.021898 TCCCTTTTTCTGAAATTGATTGAACT 57.978 30.769 3.31 0.00 0.00 3.01
1 2 8.715088 CATCCCTTTTTCTGAAATTGATTGAAC 58.285 33.333 3.31 0.00 0.00 3.18
2 3 7.388500 GCATCCCTTTTTCTGAAATTGATTGAA 59.612 33.333 3.31 0.00 0.00 2.69
3 4 6.875195 GCATCCCTTTTTCTGAAATTGATTGA 59.125 34.615 3.31 0.00 0.00 2.57
4 5 6.093082 GGCATCCCTTTTTCTGAAATTGATTG 59.907 38.462 3.31 0.51 0.00 2.67
5 6 6.175471 GGCATCCCTTTTTCTGAAATTGATT 58.825 36.000 3.31 0.00 0.00 2.57
6 7 5.338626 GGGCATCCCTTTTTCTGAAATTGAT 60.339 40.000 3.31 1.89 41.34 2.57
7 8 4.020307 GGGCATCCCTTTTTCTGAAATTGA 60.020 41.667 3.31 0.00 41.34 2.57
8 9 4.256110 GGGCATCCCTTTTTCTGAAATTG 58.744 43.478 3.31 0.40 41.34 2.32
9 10 3.055891 CGGGCATCCCTTTTTCTGAAATT 60.056 43.478 3.31 0.00 42.67 1.82
10 11 2.497273 CGGGCATCCCTTTTTCTGAAAT 59.503 45.455 3.31 0.00 42.67 2.17
11 12 1.892474 CGGGCATCCCTTTTTCTGAAA 59.108 47.619 0.00 0.00 42.67 2.69
12 13 1.074727 TCGGGCATCCCTTTTTCTGAA 59.925 47.619 0.00 0.00 42.67 3.02
13 14 0.695924 TCGGGCATCCCTTTTTCTGA 59.304 50.000 0.00 0.00 42.67 3.27
14 15 1.678101 GATCGGGCATCCCTTTTTCTG 59.322 52.381 0.00 0.00 42.67 3.02
15 16 1.410224 GGATCGGGCATCCCTTTTTCT 60.410 52.381 0.00 0.00 45.33 2.52
16 17 1.032794 GGATCGGGCATCCCTTTTTC 58.967 55.000 0.00 0.00 45.33 2.29
17 18 3.207452 GGATCGGGCATCCCTTTTT 57.793 52.632 0.00 0.00 45.33 1.94
24 25 1.604278 GCTAAACTTGGATCGGGCATC 59.396 52.381 0.00 0.00 0.00 3.91
25 26 1.064758 TGCTAAACTTGGATCGGGCAT 60.065 47.619 0.00 0.00 0.00 4.40
26 27 0.326595 TGCTAAACTTGGATCGGGCA 59.673 50.000 0.00 0.00 0.00 5.36
27 28 1.017387 CTGCTAAACTTGGATCGGGC 58.983 55.000 0.00 0.00 0.00 6.13
28 29 1.668419 CCTGCTAAACTTGGATCGGG 58.332 55.000 0.00 0.00 0.00 5.14
29 30 1.017387 GCCTGCTAAACTTGGATCGG 58.983 55.000 0.00 0.00 0.00 4.18
30 31 2.029838 AGCCTGCTAAACTTGGATCG 57.970 50.000 0.00 0.00 0.00 3.69
31 32 4.143986 AGTAGCCTGCTAAACTTGGATC 57.856 45.455 0.00 0.00 0.00 3.36
32 33 4.226168 AGAAGTAGCCTGCTAAACTTGGAT 59.774 41.667 11.06 0.00 0.00 3.41
33 34 3.583086 AGAAGTAGCCTGCTAAACTTGGA 59.417 43.478 11.06 0.00 0.00 3.53
34 35 3.944087 AGAAGTAGCCTGCTAAACTTGG 58.056 45.455 11.06 0.00 0.00 3.61
35 36 4.393371 GGAAGAAGTAGCCTGCTAAACTTG 59.607 45.833 11.06 0.00 0.00 3.16
36 37 4.041691 TGGAAGAAGTAGCCTGCTAAACTT 59.958 41.667 6.95 6.95 0.00 2.66
37 38 3.583086 TGGAAGAAGTAGCCTGCTAAACT 59.417 43.478 0.00 0.00 0.00 2.66
38 39 3.939066 TGGAAGAAGTAGCCTGCTAAAC 58.061 45.455 0.00 0.00 0.00 2.01
39 40 4.384208 GGATGGAAGAAGTAGCCTGCTAAA 60.384 45.833 0.00 0.00 0.00 1.85
40 41 3.134804 GGATGGAAGAAGTAGCCTGCTAA 59.865 47.826 0.00 0.00 0.00 3.09
41 42 2.700897 GGATGGAAGAAGTAGCCTGCTA 59.299 50.000 0.00 0.00 0.00 3.49
42 43 1.488393 GGATGGAAGAAGTAGCCTGCT 59.512 52.381 0.00 0.00 0.00 4.24
43 44 1.808133 CGGATGGAAGAAGTAGCCTGC 60.808 57.143 0.00 0.00 0.00 4.85
44 45 1.757118 TCGGATGGAAGAAGTAGCCTG 59.243 52.381 0.00 0.00 0.00 4.85
45 46 2.160721 TCGGATGGAAGAAGTAGCCT 57.839 50.000 0.00 0.00 0.00 4.58
46 47 2.981859 TTCGGATGGAAGAAGTAGCC 57.018 50.000 0.00 0.00 0.00 3.93
47 48 4.124851 TCTTTCGGATGGAAGAAGTAGC 57.875 45.455 0.00 0.00 35.70 3.58
48 49 5.725362 AGTTCTTTCGGATGGAAGAAGTAG 58.275 41.667 8.53 0.00 35.70 2.57
49 50 5.740290 AGTTCTTTCGGATGGAAGAAGTA 57.260 39.130 8.53 0.00 35.70 2.24
50 51 4.625607 AGTTCTTTCGGATGGAAGAAGT 57.374 40.909 4.10 4.87 35.70 3.01
51 52 5.525378 CCATAGTTCTTTCGGATGGAAGAAG 59.475 44.000 4.10 0.00 39.61 2.85
52 53 5.188948 TCCATAGTTCTTTCGGATGGAAGAA 59.811 40.000 0.00 0.40 42.37 2.52
53 54 4.714802 TCCATAGTTCTTTCGGATGGAAGA 59.285 41.667 0.00 0.00 42.37 2.87
54 55 5.023533 TCCATAGTTCTTTCGGATGGAAG 57.976 43.478 0.00 0.00 42.37 3.46
55 56 4.714802 TCTCCATAGTTCTTTCGGATGGAA 59.285 41.667 3.68 0.00 44.14 3.53
56 57 4.099573 GTCTCCATAGTTCTTTCGGATGGA 59.900 45.833 2.17 2.17 42.94 3.41
57 58 4.100189 AGTCTCCATAGTTCTTTCGGATGG 59.900 45.833 0.00 0.00 38.75 3.51
58 59 5.269505 AGTCTCCATAGTTCTTTCGGATG 57.730 43.478 0.00 0.00 0.00 3.51
59 60 5.941555 AAGTCTCCATAGTTCTTTCGGAT 57.058 39.130 0.00 0.00 0.00 4.18
60 61 5.163683 CGTAAGTCTCCATAGTTCTTTCGGA 60.164 44.000 0.00 0.00 32.04 4.55
61 62 5.035443 CGTAAGTCTCCATAGTTCTTTCGG 58.965 45.833 0.00 0.00 32.04 4.30
80 81 3.007635 TCTGCTTCTCGATCTCACGTAA 58.992 45.455 0.00 0.00 34.70 3.18
81 82 2.609916 CTCTGCTTCTCGATCTCACGTA 59.390 50.000 0.00 0.00 34.70 3.57
82 83 1.400142 CTCTGCTTCTCGATCTCACGT 59.600 52.381 0.00 0.00 34.70 4.49
83 84 1.859597 GCTCTGCTTCTCGATCTCACG 60.860 57.143 0.00 0.00 0.00 4.35
84 85 1.133982 TGCTCTGCTTCTCGATCTCAC 59.866 52.381 0.00 0.00 0.00 3.51
85 86 1.404748 CTGCTCTGCTTCTCGATCTCA 59.595 52.381 0.00 0.00 0.00 3.27
86 87 1.865248 GCTGCTCTGCTTCTCGATCTC 60.865 57.143 0.00 0.00 0.00 2.75
87 88 0.102844 GCTGCTCTGCTTCTCGATCT 59.897 55.000 0.00 0.00 0.00 2.75
88 89 0.875474 GGCTGCTCTGCTTCTCGATC 60.875 60.000 0.00 0.00 0.00 3.69
89 90 1.143620 GGCTGCTCTGCTTCTCGAT 59.856 57.895 0.00 0.00 0.00 3.59
90 91 2.575993 GGCTGCTCTGCTTCTCGA 59.424 61.111 0.00 0.00 0.00 4.04
91 92 2.884685 CGGCTGCTCTGCTTCTCG 60.885 66.667 0.00 0.00 0.00 4.04
92 93 2.511145 CCGGCTGCTCTGCTTCTC 60.511 66.667 0.00 0.00 0.00 2.87
93 94 3.308014 GACCGGCTGCTCTGCTTCT 62.308 63.158 0.00 0.00 0.00 2.85
94 95 2.817396 GACCGGCTGCTCTGCTTC 60.817 66.667 0.00 0.00 0.00 3.86
95 96 4.749310 CGACCGGCTGCTCTGCTT 62.749 66.667 0.00 0.00 0.00 3.91
120 121 2.043227 AGTTGATCGGAAGGAGATCCC 58.957 52.381 4.07 0.00 42.73 3.85
121 122 3.828875 AAGTTGATCGGAAGGAGATCC 57.171 47.619 4.07 0.00 42.73 3.36
122 123 3.873952 CCAAAGTTGATCGGAAGGAGATC 59.126 47.826 0.00 0.00 43.45 2.75
123 124 3.878778 CCAAAGTTGATCGGAAGGAGAT 58.121 45.455 0.00 0.00 0.00 2.75
124 125 2.615493 GCCAAAGTTGATCGGAAGGAGA 60.615 50.000 0.00 0.00 0.00 3.71
125 126 1.740025 GCCAAAGTTGATCGGAAGGAG 59.260 52.381 0.00 0.00 0.00 3.69
126 127 1.821216 GCCAAAGTTGATCGGAAGGA 58.179 50.000 0.00 0.00 0.00 3.36
127 128 0.447801 CGCCAAAGTTGATCGGAAGG 59.552 55.000 0.00 0.00 0.00 3.46
128 129 0.179189 GCGCCAAAGTTGATCGGAAG 60.179 55.000 0.00 0.00 0.00 3.46
129 130 1.582610 GGCGCCAAAGTTGATCGGAA 61.583 55.000 24.80 0.00 0.00 4.30
130 131 2.038269 GGCGCCAAAGTTGATCGGA 61.038 57.895 24.80 0.00 0.00 4.55
131 132 2.485122 GGCGCCAAAGTTGATCGG 59.515 61.111 24.80 0.00 0.00 4.18
132 133 2.098298 CGGCGCCAAAGTTGATCG 59.902 61.111 28.98 3.82 0.00 3.69
133 134 0.039527 AAACGGCGCCAAAGTTGATC 60.040 50.000 28.98 0.00 0.00 2.92
134 135 0.039527 GAAACGGCGCCAAAGTTGAT 60.040 50.000 28.98 8.41 0.00 2.57
135 136 1.098712 AGAAACGGCGCCAAAGTTGA 61.099 50.000 28.98 0.00 0.00 3.18
136 137 0.934436 CAGAAACGGCGCCAAAGTTG 60.934 55.000 28.98 14.78 0.00 3.16
137 138 1.358759 CAGAAACGGCGCCAAAGTT 59.641 52.632 28.98 19.64 0.00 2.66
138 139 0.533308 TACAGAAACGGCGCCAAAGT 60.533 50.000 28.98 14.07 0.00 2.66
139 140 0.110373 GTACAGAAACGGCGCCAAAG 60.110 55.000 28.98 13.29 0.00 2.77
140 141 0.533308 AGTACAGAAACGGCGCCAAA 60.533 50.000 28.98 0.00 0.00 3.28
141 142 1.070105 AGTACAGAAACGGCGCCAA 59.930 52.632 28.98 0.00 0.00 4.52
142 143 1.666553 CAGTACAGAAACGGCGCCA 60.667 57.895 28.98 0.00 0.00 5.69
143 144 3.023591 GCAGTACAGAAACGGCGCC 62.024 63.158 19.07 19.07 31.09 6.53
144 145 2.027625 AGCAGTACAGAAACGGCGC 61.028 57.895 6.90 0.00 44.06 6.53
145 146 1.626654 CCAGCAGTACAGAAACGGCG 61.627 60.000 4.80 4.80 44.06 6.46
146 147 1.912371 GCCAGCAGTACAGAAACGGC 61.912 60.000 0.00 0.00 40.36 5.68
147 148 1.626654 CGCCAGCAGTACAGAAACGG 61.627 60.000 0.00 0.00 0.00 4.44
148 149 1.781555 CGCCAGCAGTACAGAAACG 59.218 57.895 0.00 0.00 0.00 3.60
149 150 1.497722 GCGCCAGCAGTACAGAAAC 59.502 57.895 0.00 0.00 44.35 2.78
150 151 3.966215 GCGCCAGCAGTACAGAAA 58.034 55.556 0.00 0.00 44.35 2.52
160 161 1.372128 CACAGAAAAAGGCGCCAGC 60.372 57.895 31.54 12.52 44.18 4.85
161 162 1.286880 CCACAGAAAAAGGCGCCAG 59.713 57.895 31.54 11.20 0.00 4.85
162 163 2.855514 GCCACAGAAAAAGGCGCCA 61.856 57.895 31.54 0.00 38.86 5.69
163 164 2.049156 GCCACAGAAAAAGGCGCC 60.049 61.111 21.89 21.89 38.86 6.53
167 168 1.160137 CGAGAGGCCACAGAAAAAGG 58.840 55.000 5.01 0.00 0.00 3.11
168 169 0.519077 GCGAGAGGCCACAGAAAAAG 59.481 55.000 5.01 0.00 34.80 2.27
169 170 1.227999 CGCGAGAGGCCACAGAAAAA 61.228 55.000 5.01 0.00 38.94 1.94
170 171 1.667830 CGCGAGAGGCCACAGAAAA 60.668 57.895 5.01 0.00 38.94 2.29
171 172 2.048222 CGCGAGAGGCCACAGAAA 60.048 61.111 5.01 0.00 38.94 2.52
172 173 4.742201 GCGCGAGAGGCCACAGAA 62.742 66.667 12.10 0.00 38.94 3.02
179 180 2.481009 GAAAAAGGCGCGAGAGGC 59.519 61.111 12.10 0.00 38.69 4.70
180 181 2.399356 GGGAAAAAGGCGCGAGAGG 61.399 63.158 12.10 0.00 0.00 3.69
181 182 1.376037 AGGGAAAAAGGCGCGAGAG 60.376 57.895 12.10 0.00 0.00 3.20
182 183 1.671054 CAGGGAAAAAGGCGCGAGA 60.671 57.895 12.10 0.00 0.00 4.04
183 184 2.690778 CCAGGGAAAAAGGCGCGAG 61.691 63.158 12.10 0.00 0.00 5.03
184 185 2.671619 CCAGGGAAAAAGGCGCGA 60.672 61.111 12.10 0.00 0.00 5.87
185 186 4.419939 GCCAGGGAAAAAGGCGCG 62.420 66.667 0.00 0.00 38.86 6.86
189 190 0.115152 AGGGAAGCCAGGGAAAAAGG 59.885 55.000 0.00 0.00 0.00 3.11
190 191 1.550327 GAGGGAAGCCAGGGAAAAAG 58.450 55.000 0.00 0.00 0.00 2.27
191 192 0.251165 CGAGGGAAGCCAGGGAAAAA 60.251 55.000 0.00 0.00 0.00 1.94
192 193 1.378762 CGAGGGAAGCCAGGGAAAA 59.621 57.895 0.00 0.00 0.00 2.29
193 194 3.077907 CGAGGGAAGCCAGGGAAA 58.922 61.111 0.00 0.00 0.00 3.13
194 195 3.717294 GCGAGGGAAGCCAGGGAA 61.717 66.667 0.00 0.00 0.00 3.97
195 196 4.722535 AGCGAGGGAAGCCAGGGA 62.723 66.667 0.00 0.00 34.64 4.20
196 197 3.273788 AAAGCGAGGGAAGCCAGGG 62.274 63.158 0.00 0.00 34.64 4.45
197 198 1.746991 GAAAGCGAGGGAAGCCAGG 60.747 63.158 0.00 0.00 34.64 4.45
198 199 0.322008 AAGAAAGCGAGGGAAGCCAG 60.322 55.000 0.00 0.00 34.64 4.85
199 200 0.321653 GAAGAAAGCGAGGGAAGCCA 60.322 55.000 0.00 0.00 34.64 4.75
200 201 0.035915 AGAAGAAAGCGAGGGAAGCC 60.036 55.000 0.00 0.00 34.64 4.35
201 202 1.466558 CAAGAAGAAAGCGAGGGAAGC 59.533 52.381 0.00 0.00 0.00 3.86
202 203 1.466558 GCAAGAAGAAAGCGAGGGAAG 59.533 52.381 0.00 0.00 0.00 3.46
203 204 1.072331 AGCAAGAAGAAAGCGAGGGAA 59.928 47.619 0.00 0.00 0.00 3.97
204 205 0.687354 AGCAAGAAGAAAGCGAGGGA 59.313 50.000 0.00 0.00 0.00 4.20
205 206 2.003301 GTAGCAAGAAGAAAGCGAGGG 58.997 52.381 0.00 0.00 0.00 4.30
206 207 2.670414 CAGTAGCAAGAAGAAAGCGAGG 59.330 50.000 0.00 0.00 0.00 4.63
207 208 3.321497 ACAGTAGCAAGAAGAAAGCGAG 58.679 45.455 0.00 0.00 0.00 5.03
208 209 3.386768 ACAGTAGCAAGAAGAAAGCGA 57.613 42.857 0.00 0.00 0.00 4.93
209 210 4.238514 ACTACAGTAGCAAGAAGAAAGCG 58.761 43.478 7.57 0.00 0.00 4.68
210 211 6.869388 AGTAACTACAGTAGCAAGAAGAAAGC 59.131 38.462 7.57 0.00 0.00 3.51
211 212 8.082852 TCAGTAACTACAGTAGCAAGAAGAAAG 58.917 37.037 7.57 0.00 0.00 2.62
212 213 7.948357 TCAGTAACTACAGTAGCAAGAAGAAA 58.052 34.615 7.57 0.00 0.00 2.52
213 214 7.520451 TCAGTAACTACAGTAGCAAGAAGAA 57.480 36.000 7.57 0.00 0.00 2.52
214 215 7.363007 CCATCAGTAACTACAGTAGCAAGAAGA 60.363 40.741 7.57 0.26 0.00 2.87
215 216 6.754209 CCATCAGTAACTACAGTAGCAAGAAG 59.246 42.308 7.57 0.00 0.00 2.85
216 217 6.436218 TCCATCAGTAACTACAGTAGCAAGAA 59.564 38.462 7.57 0.00 0.00 2.52
217 218 5.949952 TCCATCAGTAACTACAGTAGCAAGA 59.050 40.000 7.57 0.07 0.00 3.02
218 219 6.037098 GTCCATCAGTAACTACAGTAGCAAG 58.963 44.000 7.57 0.00 0.00 4.01
219 220 5.392703 CGTCCATCAGTAACTACAGTAGCAA 60.393 44.000 7.57 0.00 0.00 3.91
220 221 4.095932 CGTCCATCAGTAACTACAGTAGCA 59.904 45.833 7.57 0.00 0.00 3.49
221 222 4.599047 CGTCCATCAGTAACTACAGTAGC 58.401 47.826 7.57 0.00 0.00 3.58
222 223 4.497674 GGCGTCCATCAGTAACTACAGTAG 60.498 50.000 6.00 6.00 0.00 2.57
223 224 3.379372 GGCGTCCATCAGTAACTACAGTA 59.621 47.826 0.00 0.00 0.00 2.74
224 225 2.165845 GGCGTCCATCAGTAACTACAGT 59.834 50.000 0.00 0.00 0.00 3.55
225 226 2.427453 AGGCGTCCATCAGTAACTACAG 59.573 50.000 0.00 0.00 0.00 2.74
226 227 2.165641 CAGGCGTCCATCAGTAACTACA 59.834 50.000 0.00 0.00 0.00 2.74
227 228 2.426024 TCAGGCGTCCATCAGTAACTAC 59.574 50.000 0.00 0.00 0.00 2.73
228 229 2.688446 CTCAGGCGTCCATCAGTAACTA 59.312 50.000 0.00 0.00 0.00 2.24
229 230 1.478510 CTCAGGCGTCCATCAGTAACT 59.521 52.381 0.00 0.00 0.00 2.24
230 231 1.471676 CCTCAGGCGTCCATCAGTAAC 60.472 57.143 0.00 0.00 0.00 2.50
231 232 0.824109 CCTCAGGCGTCCATCAGTAA 59.176 55.000 0.00 0.00 0.00 2.24
232 233 0.324368 ACCTCAGGCGTCCATCAGTA 60.324 55.000 0.00 0.00 0.00 2.74
233 234 0.324368 TACCTCAGGCGTCCATCAGT 60.324 55.000 0.00 0.00 0.00 3.41
234 235 1.000283 GATACCTCAGGCGTCCATCAG 60.000 57.143 0.00 0.00 0.00 2.90
235 236 1.040646 GATACCTCAGGCGTCCATCA 58.959 55.000 0.00 0.00 0.00 3.07
236 237 0.039074 CGATACCTCAGGCGTCCATC 60.039 60.000 0.00 0.00 0.00 3.51
237 238 0.755698 ACGATACCTCAGGCGTCCAT 60.756 55.000 0.00 0.00 30.15 3.41
238 239 0.968901 AACGATACCTCAGGCGTCCA 60.969 55.000 0.00 0.00 35.74 4.02
239 240 0.527817 CAACGATACCTCAGGCGTCC 60.528 60.000 0.00 0.00 35.74 4.79
240 241 0.527817 CCAACGATACCTCAGGCGTC 60.528 60.000 0.00 0.00 35.74 5.19
241 242 0.968901 TCCAACGATACCTCAGGCGT 60.969 55.000 0.00 0.00 38.81 5.68
242 243 0.389391 ATCCAACGATACCTCAGGCG 59.611 55.000 0.00 0.00 0.00 5.52
243 244 1.871080 CATCCAACGATACCTCAGGC 58.129 55.000 0.00 0.00 0.00 4.85
244 245 1.541233 GGCATCCAACGATACCTCAGG 60.541 57.143 0.00 0.00 30.07 3.86
245 246 1.414181 AGGCATCCAACGATACCTCAG 59.586 52.381 0.00 0.00 37.70 3.35
246 247 1.138859 CAGGCATCCAACGATACCTCA 59.861 52.381 0.00 0.00 39.88 3.86
247 248 1.412710 TCAGGCATCCAACGATACCTC 59.587 52.381 0.00 0.00 39.88 3.85
248 249 1.496060 TCAGGCATCCAACGATACCT 58.504 50.000 0.00 0.00 42.25 3.08
249 250 2.146342 CATCAGGCATCCAACGATACC 58.854 52.381 0.00 0.00 32.58 2.73
250 251 2.146342 CCATCAGGCATCCAACGATAC 58.854 52.381 0.00 0.00 0.00 2.24
251 252 2.046292 TCCATCAGGCATCCAACGATA 58.954 47.619 0.00 0.00 33.74 2.92
252 253 0.839277 TCCATCAGGCATCCAACGAT 59.161 50.000 0.00 0.00 33.74 3.73
253 254 0.107703 GTCCATCAGGCATCCAACGA 60.108 55.000 0.00 0.00 33.74 3.85
254 255 1.431488 CGTCCATCAGGCATCCAACG 61.431 60.000 0.00 0.00 33.74 4.10
255 256 1.097547 CCGTCCATCAGGCATCCAAC 61.098 60.000 0.00 0.00 33.74 3.77
256 257 1.224315 CCGTCCATCAGGCATCCAA 59.776 57.895 0.00 0.00 33.74 3.53
257 258 1.995066 ACCGTCCATCAGGCATCCA 60.995 57.895 0.00 0.00 33.74 3.41
258 259 1.524621 CACCGTCCATCAGGCATCC 60.525 63.158 0.00 0.00 33.74 3.51
259 260 2.182842 GCACCGTCCATCAGGCATC 61.183 63.158 0.00 0.00 33.74 3.91
260 261 2.124570 GCACCGTCCATCAGGCAT 60.125 61.111 0.00 0.00 33.74 4.40
261 262 3.610619 CTGCACCGTCCATCAGGCA 62.611 63.158 0.00 0.00 33.74 4.75
262 263 2.821366 CTGCACCGTCCATCAGGC 60.821 66.667 0.00 0.00 33.74 4.85
263 264 2.821366 GCTGCACCGTCCATCAGG 60.821 66.667 0.00 0.00 0.00 3.86
264 265 3.190849 CGCTGCACCGTCCATCAG 61.191 66.667 0.00 0.00 0.00 2.90
265 266 4.758251 CCGCTGCACCGTCCATCA 62.758 66.667 0.00 0.00 0.00 3.07
282 283 4.790861 GCCGAGGGACGTCGTTCC 62.791 72.222 15.44 15.44 38.32 3.62
283 284 3.966026 CTGCCGAGGGACGTCGTTC 62.966 68.421 9.92 8.57 38.32 3.95
284 285 4.052229 CTGCCGAGGGACGTCGTT 62.052 66.667 9.92 0.00 38.32 3.85
285 286 3.907260 TACTGCCGAGGGACGTCGT 62.907 63.158 9.92 0.00 38.32 4.34
286 287 3.109612 CTACTGCCGAGGGACGTCG 62.110 68.421 9.92 7.38 40.78 5.12
287 288 1.310933 TTCTACTGCCGAGGGACGTC 61.311 60.000 7.13 7.13 40.78 4.34
288 289 1.303888 TTCTACTGCCGAGGGACGT 60.304 57.895 0.00 0.00 40.78 4.34
289 290 1.139095 GTTCTACTGCCGAGGGACG 59.861 63.158 0.00 0.00 42.18 4.79
290 291 1.139095 CGTTCTACTGCCGAGGGAC 59.861 63.158 0.00 0.00 0.00 4.46
291 292 0.609957 TTCGTTCTACTGCCGAGGGA 60.610 55.000 0.00 0.00 31.54 4.20
292 293 0.458025 GTTCGTTCTACTGCCGAGGG 60.458 60.000 0.00 0.00 31.54 4.30
293 294 0.526662 AGTTCGTTCTACTGCCGAGG 59.473 55.000 0.00 0.00 31.54 4.63
294 295 3.119919 ACTTAGTTCGTTCTACTGCCGAG 60.120 47.826 0.00 0.00 31.54 4.63
295 296 2.816087 ACTTAGTTCGTTCTACTGCCGA 59.184 45.455 0.00 0.00 0.00 5.54
296 297 3.169733 GACTTAGTTCGTTCTACTGCCG 58.830 50.000 0.00 0.00 0.00 5.69
297 298 4.082895 TCTGACTTAGTTCGTTCTACTGCC 60.083 45.833 0.00 0.00 0.00 4.85
298 299 5.044428 TCTGACTTAGTTCGTTCTACTGC 57.956 43.478 0.00 0.00 0.00 4.40
299 300 5.411977 TCCTCTGACTTAGTTCGTTCTACTG 59.588 44.000 0.00 0.00 0.00 2.74
300 301 5.558818 TCCTCTGACTTAGTTCGTTCTACT 58.441 41.667 0.00 0.00 0.00 2.57
301 302 5.876612 TCCTCTGACTTAGTTCGTTCTAC 57.123 43.478 0.00 0.00 0.00 2.59
302 303 6.416415 AGATCCTCTGACTTAGTTCGTTCTA 58.584 40.000 0.00 0.00 0.00 2.10
303 304 5.258051 AGATCCTCTGACTTAGTTCGTTCT 58.742 41.667 0.00 0.00 0.00 3.01
304 305 5.570234 AGATCCTCTGACTTAGTTCGTTC 57.430 43.478 0.00 0.00 0.00 3.95
305 306 4.095185 CGAGATCCTCTGACTTAGTTCGTT 59.905 45.833 0.00 0.00 0.00 3.85
306 307 3.623960 CGAGATCCTCTGACTTAGTTCGT 59.376 47.826 0.00 0.00 0.00 3.85
307 308 3.623960 ACGAGATCCTCTGACTTAGTTCG 59.376 47.826 0.00 0.00 0.00 3.95
308 309 5.449451 GGAACGAGATCCTCTGACTTAGTTC 60.449 48.000 0.00 0.00 36.50 3.01
309 310 4.399934 GGAACGAGATCCTCTGACTTAGTT 59.600 45.833 0.00 0.00 36.50 2.24
310 311 3.949113 GGAACGAGATCCTCTGACTTAGT 59.051 47.826 0.00 0.00 36.50 2.24
311 312 3.948473 TGGAACGAGATCCTCTGACTTAG 59.052 47.826 0.00 0.00 40.35 2.18
312 313 3.695060 GTGGAACGAGATCCTCTGACTTA 59.305 47.826 0.00 0.00 40.35 2.24
313 314 2.494073 GTGGAACGAGATCCTCTGACTT 59.506 50.000 0.00 0.00 40.35 3.01
314 315 2.096248 GTGGAACGAGATCCTCTGACT 58.904 52.381 0.00 0.00 40.35 3.41
315 316 2.096248 AGTGGAACGAGATCCTCTGAC 58.904 52.381 9.33 0.81 45.86 3.51
316 317 2.516227 AGTGGAACGAGATCCTCTGA 57.484 50.000 9.33 0.00 45.86 3.27
317 318 6.189677 GATATAGTGGAACGAGATCCTCTG 57.810 45.833 16.06 0.00 45.86 3.35
322 323 5.336055 CCTGTGGATATAGTGGAACGAGATC 60.336 48.000 0.00 0.00 45.86 2.75
323 324 4.524714 CCTGTGGATATAGTGGAACGAGAT 59.475 45.833 0.00 0.00 45.86 2.75
324 325 3.889538 CCTGTGGATATAGTGGAACGAGA 59.110 47.826 0.00 0.00 45.86 4.04
325 326 3.637229 ACCTGTGGATATAGTGGAACGAG 59.363 47.826 0.00 0.00 45.86 4.18
326 327 3.638860 ACCTGTGGATATAGTGGAACGA 58.361 45.455 0.00 0.00 45.86 3.85
327 328 4.369182 GAACCTGTGGATATAGTGGAACG 58.631 47.826 0.00 0.00 45.86 3.95
328 329 4.704965 GGAACCTGTGGATATAGTGGAAC 58.295 47.826 0.00 0.00 0.00 3.62
369 370 2.341257 CCCGTGACAGATTGACAGAAG 58.659 52.381 0.00 0.00 0.00 2.85
399 400 1.447317 CGCTGTATCCCCATTGCCAC 61.447 60.000 0.00 0.00 0.00 5.01
516 525 7.977853 ACATCGTACTAATCAACTTTCGGTATT 59.022 33.333 0.00 0.00 0.00 1.89
534 543 6.774354 TTACAAGAAAACCTCACATCGTAC 57.226 37.500 0.00 0.00 0.00 3.67
537 546 6.202954 AGAGTTTACAAGAAAACCTCACATCG 59.797 38.462 0.00 0.00 39.66 3.84
538 547 7.497925 AGAGTTTACAAGAAAACCTCACATC 57.502 36.000 0.00 0.00 39.66 3.06
539 548 8.429641 TCTAGAGTTTACAAGAAAACCTCACAT 58.570 33.333 0.00 0.00 39.66 3.21
629 644 6.183360 CCAACGGTATTACTCGTTTTTCTACC 60.183 42.308 15.69 0.00 45.66 3.18
636 651 3.006752 TGGTCCAACGGTATTACTCGTTT 59.993 43.478 15.69 4.64 45.66 3.60
643 658 5.862845 TGTACTTTTGGTCCAACGGTATTA 58.137 37.500 2.98 2.37 0.00 0.98
665 680 2.157279 CGAGAAAGCTCTTCTGTTGCTG 59.843 50.000 13.60 0.00 39.06 4.41
666 681 2.224161 ACGAGAAAGCTCTTCTGTTGCT 60.224 45.455 13.60 0.00 39.06 3.91
699 720 3.120321 ACACTTCACCGCAGAAATGTA 57.880 42.857 1.20 0.00 36.34 2.29
702 723 2.290641 GTCAACACTTCACCGCAGAAAT 59.709 45.455 0.00 0.00 0.00 2.17
733 754 3.325135 TCAACTTGTCCTCCTCTTCTTCC 59.675 47.826 0.00 0.00 0.00 3.46
766 790 0.037326 GTGCATCGTGTGGGAGAAGA 60.037 55.000 0.00 0.00 0.00 2.87
776 800 0.110509 GAACAGTGCAGTGCATCGTG 60.111 55.000 22.87 20.14 41.91 4.35
813 842 4.802039 CGATCAATTTGCTTCTTTGGATGG 59.198 41.667 0.00 0.00 0.00 3.51
837 866 1.918868 GCCGTCGGATTGGTTTGACC 61.919 60.000 17.49 0.00 39.22 4.02
846 875 1.009222 GTATCGTCGCCGTCGGATT 60.009 57.895 17.49 0.00 36.13 3.01
858 887 2.830370 GACGGACGGGGGTATCGT 60.830 66.667 0.00 0.00 44.03 3.73
939 968 4.033251 AGGTTGGGGATCGGGGGA 62.033 66.667 0.00 0.00 0.00 4.81
1981 2024 2.736144 TATCGCCACGAAGAAACTGT 57.264 45.000 0.00 0.00 39.99 3.55
1987 2030 2.540973 CGATGTCTTATCGCCACGAAGA 60.541 50.000 0.00 0.00 39.99 2.87
2021 2064 0.316204 GCAAACAGTGGAGCAAGCAT 59.684 50.000 0.00 0.00 0.00 3.79
2025 2068 1.473258 ACTTGCAAACAGTGGAGCAA 58.527 45.000 15.28 15.28 43.90 3.91
2071 2114 6.311200 AGCTTCTTCAACAAACAAATGTTCAC 59.689 34.615 0.00 0.00 41.44 3.18
2143 2186 5.107453 CGAACAAGTTGCTCTACTTCGAATT 60.107 40.000 15.18 0.00 37.38 2.17
2155 2198 4.900635 AATCAAGAACGAACAAGTTGCT 57.099 36.364 1.81 0.00 34.00 3.91
2156 2199 7.623268 ATTTAATCAAGAACGAACAAGTTGC 57.377 32.000 1.81 0.00 34.00 4.17
2167 2213 8.589629 CAAGCAGCACATAATTTAATCAAGAAC 58.410 33.333 0.00 0.00 0.00 3.01
2230 2276 0.391263 ACCGATCTTTCGCCTTCACC 60.391 55.000 0.00 0.00 44.12 4.02
2312 2358 8.575058 CATGATTGCATCTTGTGGAGAACAATG 61.575 40.741 10.49 0.00 41.52 2.82
2355 2407 6.730960 TCTTAATTTTGTACCACATCCGAC 57.269 37.500 0.00 0.00 0.00 4.79
2356 2408 7.201574 CGATTCTTAATTTTGTACCACATCCGA 60.202 37.037 0.00 0.00 0.00 4.55
2383 2435 8.536175 TCGTGCTTGATATGATGGGTAAATATA 58.464 33.333 0.00 0.00 0.00 0.86
2393 2448 4.567959 TGTGAGTTCGTGCTTGATATGATG 59.432 41.667 0.00 0.00 0.00 3.07
2403 2458 2.820059 TCAGATTGTGAGTTCGTGCT 57.180 45.000 0.00 0.00 0.00 4.40
2411 2466 0.506080 GCGCGCTATCAGATTGTGAG 59.494 55.000 26.67 7.11 39.07 3.51
2414 2469 1.154205 GGTGCGCGCTATCAGATTGT 61.154 55.000 33.29 0.00 0.00 2.71
2467 2535 7.606349 TCATTCTCTATACTACATGCACATCC 58.394 38.462 0.00 0.00 0.00 3.51
2476 2544 7.285629 CCAACTGACCTCATTCTCTATACTACA 59.714 40.741 0.00 0.00 0.00 2.74
2479 2547 5.600484 CCCAACTGACCTCATTCTCTATACT 59.400 44.000 0.00 0.00 0.00 2.12
2487 2555 2.029918 GCAAACCCAACTGACCTCATTC 60.030 50.000 0.00 0.00 0.00 2.67
2498 2566 1.227118 CACCCAACGCAAACCCAAC 60.227 57.895 0.00 0.00 0.00 3.77
2503 2571 0.316360 CACGTACACCCAACGCAAAC 60.316 55.000 0.00 0.00 44.04 2.93
2504 2572 2.015382 CACGTACACCCAACGCAAA 58.985 52.632 0.00 0.00 44.04 3.68
2540 2608 1.615392 GAAGTCAAAAGCACATGCCCT 59.385 47.619 0.00 0.00 43.38 5.19
2545 2613 6.395426 TGAATGAAGAAGTCAAAAGCACAT 57.605 33.333 0.00 0.00 40.50 3.21
2610 2678 5.802956 CCGACTTTAGTTTGCAAACAAAGAA 59.197 36.000 38.50 27.75 46.17 2.52
2620 2688 1.154282 GGCGCCGACTTTAGTTTGC 60.154 57.895 12.58 0.00 0.00 3.68
2640 2708 9.190317 AGCAGATGGATAATAATCTATACGTGA 57.810 33.333 0.00 0.00 33.78 4.35
2645 2713 8.470657 AGCGAGCAGATGGATAATAATCTATA 57.529 34.615 0.00 0.00 33.78 1.31
2655 2723 1.637338 ATGGAGCGAGCAGATGGATA 58.363 50.000 0.00 0.00 0.00 2.59
2656 2724 0.763652 AATGGAGCGAGCAGATGGAT 59.236 50.000 0.00 0.00 0.00 3.41
2657 2725 0.543277 AAATGGAGCGAGCAGATGGA 59.457 50.000 0.00 0.00 0.00 3.41
2779 2847 6.430451 GCGGGATAACAAAGAACATCTATTG 58.570 40.000 0.00 0.00 0.00 1.90
2780 2848 5.236478 CGCGGGATAACAAAGAACATCTATT 59.764 40.000 0.00 0.00 0.00 1.73
2854 2922 2.432628 GTTCCCTGACTGCGACGG 60.433 66.667 0.00 0.00 0.00 4.79
2856 2924 0.033504 TCAAGTTCCCTGACTGCGAC 59.966 55.000 0.00 0.00 0.00 5.19
2861 2929 4.536090 TGTGGATAATCAAGTTCCCTGACT 59.464 41.667 0.00 0.00 0.00 3.41
2881 2950 7.864108 TCTGTCAATTTATGTCCCTTATGTG 57.136 36.000 0.00 0.00 0.00 3.21
2884 2953 9.178758 GACTTTCTGTCAATTTATGTCCCTTAT 57.821 33.333 0.00 0.00 44.73 1.73
2910 2979 8.808529 CACCAGAAAGAATTACTATAACTGACG 58.191 37.037 0.00 0.00 0.00 4.35
2923 2992 5.363580 ACAAATGACCACACCAGAAAGAATT 59.636 36.000 0.00 0.00 0.00 2.17
2926 2995 3.631686 CACAAATGACCACACCAGAAAGA 59.368 43.478 0.00 0.00 0.00 2.52
2953 3022 2.503061 CCTCATCCCTGAGCCACG 59.497 66.667 0.00 0.00 46.39 4.94
2959 3028 1.289160 CCACTTTCCCTCATCCCTGA 58.711 55.000 0.00 0.00 0.00 3.86
2978 3049 3.697166 TGCCCTGAGTCTTAAATTTCCC 58.303 45.455 0.00 0.00 0.00 3.97
2984 3055 5.241403 TCAGATTTGCCCTGAGTCTTAAA 57.759 39.130 0.00 0.00 35.89 1.52
2995 3066 2.789409 AGTACCACTCAGATTTGCCC 57.211 50.000 0.00 0.00 0.00 5.36
3002 3073 5.708697 TCTTCGTTCATTAGTACCACTCAGA 59.291 40.000 0.00 0.00 0.00 3.27
3009 3080 3.864003 GTGCCTCTTCGTTCATTAGTACC 59.136 47.826 0.00 0.00 0.00 3.34
3056 3133 5.147767 AGGCGGCATAGATGGATATACATA 58.852 41.667 13.08 0.00 0.00 2.29
3072 3149 0.810648 CTATTTGCAAAGAGGCGGCA 59.189 50.000 23.16 0.00 36.28 5.69
3077 3154 3.025978 TCATGCCCTATTTGCAAAGAGG 58.974 45.455 35.64 35.64 44.88 3.69
3128 3205 6.323266 CGTAGAAGAGCTTAGCAAAAGTCTA 58.677 40.000 7.07 3.32 0.00 2.59
3129 3206 5.164954 CGTAGAAGAGCTTAGCAAAAGTCT 58.835 41.667 7.07 4.27 0.00 3.24
3130 3207 4.201637 GCGTAGAAGAGCTTAGCAAAAGTC 60.202 45.833 7.07 0.00 0.00 3.01
3131 3208 3.680458 GCGTAGAAGAGCTTAGCAAAAGT 59.320 43.478 7.07 0.00 0.00 2.66
3132 3209 3.062774 GGCGTAGAAGAGCTTAGCAAAAG 59.937 47.826 7.07 0.00 31.90 2.27
3133 3210 3.000727 GGCGTAGAAGAGCTTAGCAAAA 58.999 45.455 7.07 0.00 31.90 2.44
3134 3211 2.028476 TGGCGTAGAAGAGCTTAGCAAA 60.028 45.455 7.07 0.00 31.90 3.68
3135 3212 1.548719 TGGCGTAGAAGAGCTTAGCAA 59.451 47.619 7.07 0.00 31.90 3.91
3136 3213 1.182667 TGGCGTAGAAGAGCTTAGCA 58.817 50.000 7.07 0.00 31.90 3.49
3137 3214 1.927838 GTTGGCGTAGAAGAGCTTAGC 59.072 52.381 0.00 0.00 0.00 3.09
3138 3215 2.094182 TGGTTGGCGTAGAAGAGCTTAG 60.094 50.000 0.00 0.00 0.00 2.18
3139 3216 1.897133 TGGTTGGCGTAGAAGAGCTTA 59.103 47.619 0.00 0.00 0.00 3.09
3140 3217 0.685097 TGGTTGGCGTAGAAGAGCTT 59.315 50.000 0.00 0.00 0.00 3.74
3141 3218 0.037232 GTGGTTGGCGTAGAAGAGCT 60.037 55.000 0.00 0.00 0.00 4.09
3142 3219 0.320421 TGTGGTTGGCGTAGAAGAGC 60.320 55.000 0.00 0.00 0.00 4.09
3143 3220 2.386661 ATGTGGTTGGCGTAGAAGAG 57.613 50.000 0.00 0.00 0.00 2.85
3144 3221 2.418197 GCTATGTGGTTGGCGTAGAAGA 60.418 50.000 0.00 0.00 0.00 2.87
3145 3222 1.933853 GCTATGTGGTTGGCGTAGAAG 59.066 52.381 0.00 0.00 0.00 2.85
3146 3223 1.276705 TGCTATGTGGTTGGCGTAGAA 59.723 47.619 0.00 0.00 0.00 2.10
3147 3224 0.899019 TGCTATGTGGTTGGCGTAGA 59.101 50.000 0.00 0.00 0.00 2.59
3148 3225 1.953559 ATGCTATGTGGTTGGCGTAG 58.046 50.000 0.00 0.00 0.00 3.51
3149 3226 2.224185 CCTATGCTATGTGGTTGGCGTA 60.224 50.000 0.00 0.00 0.00 4.42
3150 3227 1.475034 CCTATGCTATGTGGTTGGCGT 60.475 52.381 0.00 0.00 0.00 5.68
3151 3228 1.229428 CCTATGCTATGTGGTTGGCG 58.771 55.000 0.00 0.00 0.00 5.69
3152 3229 1.949525 CACCTATGCTATGTGGTTGGC 59.050 52.381 0.00 0.00 0.00 4.52
3153 3230 2.575532 CCACCTATGCTATGTGGTTGG 58.424 52.381 0.00 0.00 43.62 3.77
3158 3235 4.071961 TGCTTACCACCTATGCTATGTG 57.928 45.455 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.