Multiple sequence alignment - TraesCS5B01G244100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G244100 chr5B 100.000 3865 0 0 1 3865 425613095 425609231 0.000000e+00 7138.0
1 TraesCS5B01G244100 chr5B 89.856 1735 91 49 532 2225 425379791 425381481 0.000000e+00 2150.0
2 TraesCS5B01G244100 chr5B 90.274 658 40 13 2465 3112 425381938 425382581 0.000000e+00 839.0
3 TraesCS5B01G244100 chr5B 91.604 536 40 4 3 535 411229750 411229217 0.000000e+00 736.0
4 TraesCS5B01G244100 chr5B 90.659 546 45 5 1 542 38700513 38699970 0.000000e+00 721.0
5 TraesCS5B01G244100 chr5B 93.789 161 9 1 2300 2459 548356271 548356111 1.390000e-59 241.0
6 TraesCS5B01G244100 chr5B 88.535 157 12 1 3118 3274 425382626 425382776 6.590000e-43 185.0
7 TraesCS5B01G244100 chr5B 95.000 80 4 0 2222 2301 425381848 425381927 4.050000e-25 126.0
8 TraesCS5B01G244100 chr5D 87.567 1858 97 63 521 2289 360371163 360369351 0.000000e+00 2028.0
9 TraesCS5B01G244100 chr5D 90.730 1219 63 29 535 1730 360048234 360049425 0.000000e+00 1580.0
10 TraesCS5B01G244100 chr5D 86.756 823 63 19 2465 3275 360369328 360368540 0.000000e+00 874.0
11 TraesCS5B01G244100 chr5D 89.024 656 41 14 2465 3112 360050026 360050658 0.000000e+00 784.0
12 TraesCS5B01G244100 chr5D 89.580 547 34 11 1735 2261 360049465 360050008 0.000000e+00 673.0
13 TraesCS5B01G244100 chr5D 92.188 384 17 4 3483 3865 324370153 324370524 7.350000e-147 531.0
14 TraesCS5B01G244100 chr5D 89.239 381 29 9 3486 3865 460401012 460400643 2.100000e-127 466.0
15 TraesCS5B01G244100 chr5D 91.720 157 12 1 3118 3274 360050698 360050853 2.340000e-52 217.0
16 TraesCS5B01G244100 chr5A 87.258 1758 98 64 583 2290 461007191 461008872 0.000000e+00 1890.0
17 TraesCS5B01G244100 chr5A 86.996 892 59 31 832 1712 461232003 461231158 0.000000e+00 952.0
18 TraesCS5B01G244100 chr5A 90.543 645 32 12 2484 3112 461008891 461009522 0.000000e+00 826.0
19 TraesCS5B01G244100 chr5A 88.722 532 40 13 1789 2301 461231158 461230628 1.960000e-177 632.0
20 TraesCS5B01G244100 chr5A 88.676 521 38 11 2481 2986 461230035 461229521 1.970000e-172 616.0
21 TraesCS5B01G244100 chr5A 89.238 223 17 5 574 795 461232528 461232312 4.920000e-69 272.0
22 TraesCS5B01G244100 chr5A 89.172 157 17 0 3118 3274 461009568 461009724 3.050000e-46 196.0
23 TraesCS5B01G244100 chr5A 80.357 168 31 2 2300 2465 659881932 659882099 4.050000e-25 126.0
24 TraesCS5B01G244100 chr3B 92.509 534 30 7 1 526 30203346 30203877 0.000000e+00 756.0
25 TraesCS5B01G244100 chr3B 92.052 541 31 6 1 530 89378732 89379271 0.000000e+00 750.0
26 TraesCS5B01G244100 chr3B 91.248 537 35 5 1 525 813153990 813154526 0.000000e+00 721.0
27 TraesCS5B01G244100 chr2B 92.614 528 31 7 3 530 630727885 630728404 0.000000e+00 752.0
28 TraesCS5B01G244100 chr2B 90.126 557 38 7 1 540 552937117 552936561 0.000000e+00 708.0
29 TraesCS5B01G244100 chr2B 90.724 539 30 11 1 526 648937932 648937401 0.000000e+00 701.0
30 TraesCS5B01G244100 chr2B 91.176 170 13 1 2300 2467 6034985 6034816 3.000000e-56 230.0
31 TraesCS5B01G244100 chr2B 98.611 72 1 0 2396 2467 110765099 110765028 1.130000e-25 128.0
32 TraesCS5B01G244100 chrUn 100.000 402 0 0 1596 1997 478540350 478539949 0.000000e+00 743.0
33 TraesCS5B01G244100 chr1B 91.078 538 33 13 1 533 33079524 33078997 0.000000e+00 713.0
34 TraesCS5B01G244100 chr1B 94.048 168 10 0 2300 2467 119580597 119580764 4.960000e-64 255.0
35 TraesCS5B01G244100 chr3D 88.986 572 35 11 3301 3865 562688943 562688393 0.000000e+00 682.0
36 TraesCS5B01G244100 chr3D 91.406 384 20 3 3483 3865 32353085 32353456 7.400000e-142 514.0
37 TraesCS5B01G244100 chr3D 87.273 220 19 5 3301 3514 32355212 32354996 3.860000e-60 243.0
38 TraesCS5B01G244100 chr2D 87.145 599 42 18 3297 3865 97082988 97083581 0.000000e+00 647.0
39 TraesCS5B01G244100 chr2D 86.971 591 42 19 3304 3865 520513706 520514290 1.960000e-177 632.0
40 TraesCS5B01G244100 chr2D 87.727 220 18 6 3301 3514 72111400 72111616 8.290000e-62 248.0
41 TraesCS5B01G244100 chr2D 86.425 221 21 7 3300 3514 477296780 477296563 2.320000e-57 233.0
42 TraesCS5B01G244100 chr2D 89.759 166 17 0 2300 2465 88772464 88772299 3.020000e-51 213.0
43 TraesCS5B01G244100 chr1D 85.304 592 48 23 3304 3865 471618240 471617658 3.350000e-160 575.0
44 TraesCS5B01G244100 chr1D 91.339 381 20 4 3486 3865 438283148 438282780 3.450000e-140 508.0
45 TraesCS5B01G244100 chr1D 88.341 223 17 6 3298 3514 438283444 438283225 3.830000e-65 259.0
46 TraesCS5B01G244100 chr1D 88.182 220 17 6 3301 3514 471615935 471616151 1.780000e-63 254.0
47 TraesCS5B01G244100 chr1D 87.500 224 18 7 3297 3514 438282334 438282553 2.310000e-62 250.0
48 TraesCS5B01G244100 chr1D 84.615 169 24 2 2300 2467 482149417 482149250 2.390000e-37 167.0
49 TraesCS5B01G244100 chr6D 85.791 556 40 22 3293 3817 32264841 32264294 1.570000e-153 553.0
50 TraesCS5B01G244100 chr6D 81.301 123 18 2 2349 2466 363009073 363008951 1.140000e-15 95.3
51 TraesCS5B01G244100 chr4A 91.864 381 16 4 3486 3865 456589402 456589036 5.720000e-143 518.0
52 TraesCS5B01G244100 chr7A 88.542 96 11 0 2372 2467 236516574 236516669 2.440000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G244100 chr5B 425609231 425613095 3864 True 7138.000000 7138 100.00000 1 3865 1 chr5B.!!$R3 3864
1 TraesCS5B01G244100 chr5B 425379791 425382776 2985 False 825.000000 2150 90.91625 532 3274 4 chr5B.!!$F1 2742
2 TraesCS5B01G244100 chr5B 411229217 411229750 533 True 736.000000 736 91.60400 3 535 1 chr5B.!!$R2 532
3 TraesCS5B01G244100 chr5B 38699970 38700513 543 True 721.000000 721 90.65900 1 542 1 chr5B.!!$R1 541
4 TraesCS5B01G244100 chr5D 360368540 360371163 2623 True 1451.000000 2028 87.16150 521 3275 2 chr5D.!!$R2 2754
5 TraesCS5B01G244100 chr5D 360048234 360050853 2619 False 813.500000 1580 90.26350 535 3274 4 chr5D.!!$F2 2739
6 TraesCS5B01G244100 chr5A 461007191 461009724 2533 False 970.666667 1890 88.99100 583 3274 3 chr5A.!!$F2 2691
7 TraesCS5B01G244100 chr5A 461229521 461232528 3007 True 618.000000 952 88.40800 574 2986 4 chr5A.!!$R1 2412
8 TraesCS5B01G244100 chr3B 30203346 30203877 531 False 756.000000 756 92.50900 1 526 1 chr3B.!!$F1 525
9 TraesCS5B01G244100 chr3B 89378732 89379271 539 False 750.000000 750 92.05200 1 530 1 chr3B.!!$F2 529
10 TraesCS5B01G244100 chr3B 813153990 813154526 536 False 721.000000 721 91.24800 1 525 1 chr3B.!!$F3 524
11 TraesCS5B01G244100 chr2B 630727885 630728404 519 False 752.000000 752 92.61400 3 530 1 chr2B.!!$F1 527
12 TraesCS5B01G244100 chr2B 552936561 552937117 556 True 708.000000 708 90.12600 1 540 1 chr2B.!!$R3 539
13 TraesCS5B01G244100 chr2B 648937401 648937932 531 True 701.000000 701 90.72400 1 526 1 chr2B.!!$R4 525
14 TraesCS5B01G244100 chr1B 33078997 33079524 527 True 713.000000 713 91.07800 1 533 1 chr1B.!!$R1 532
15 TraesCS5B01G244100 chr3D 562688393 562688943 550 True 682.000000 682 88.98600 3301 3865 1 chr3D.!!$R2 564
16 TraesCS5B01G244100 chr2D 97082988 97083581 593 False 647.000000 647 87.14500 3297 3865 1 chr2D.!!$F2 568
17 TraesCS5B01G244100 chr2D 520513706 520514290 584 False 632.000000 632 86.97100 3304 3865 1 chr2D.!!$F3 561
18 TraesCS5B01G244100 chr1D 471617658 471618240 582 True 575.000000 575 85.30400 3304 3865 1 chr1D.!!$R1 561
19 TraesCS5B01G244100 chr1D 438282780 438283444 664 True 383.500000 508 89.84000 3298 3865 2 chr1D.!!$R3 567
20 TraesCS5B01G244100 chr6D 32264294 32264841 547 True 553.000000 553 85.79100 3293 3817 1 chr6D.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
724 759 1.896220 AATTTGGCTGCTCGAGTCAA 58.104 45.0 15.13 10.76 44.82 3.18 F
1594 1984 0.247814 GCGCTGATTCATGTGAACCG 60.248 55.0 0.00 1.12 36.80 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2336 3280 0.035739 GGAGAAGGGTTGGTGCGTAA 59.964 55.0 0.0 0.0 0.0 3.18 R
3278 4860 0.105453 ATCCGTGGCTCCTATCCTGT 60.105 55.0 0.0 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 3.434299 GCGTAAGATCCGTTTTCCTTTCA 59.566 43.478 0.00 0.00 43.02 2.69
123 124 6.534079 CGTAAGATCCGTTTTCCTTTCATACT 59.466 38.462 0.00 0.00 43.02 2.12
244 250 5.437289 AAAACAACAGATTTCTCATCGCA 57.563 34.783 0.00 0.00 0.00 5.10
294 306 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
385 405 2.892640 CCGGCGATGGTGAGAAGA 59.107 61.111 9.30 0.00 0.00 2.87
425 445 5.521010 ACAAATATGATGCCTCGCAAAAATG 59.479 36.000 0.00 0.00 43.62 2.32
434 454 3.627577 GCCTCGCAAAAATGAAGGAGATA 59.372 43.478 0.00 0.00 0.00 1.98
466 486 2.746279 TCTTGGGTGATGGTTGTTGT 57.254 45.000 0.00 0.00 0.00 3.32
498 520 3.071479 TGTGTTATGTTTTCTCTCCCGC 58.929 45.455 0.00 0.00 0.00 6.13
605 632 2.948979 AGGAATTCACTCACGCACAAAA 59.051 40.909 7.93 0.00 0.00 2.44
724 759 1.896220 AATTTGGCTGCTCGAGTCAA 58.104 45.000 15.13 10.76 44.82 3.18
761 796 2.036571 CCGTTGCCCGTCTTTACCC 61.037 63.158 0.00 0.00 33.66 3.69
841 1153 2.444706 CTCTCATCCGCCCCTCCA 60.445 66.667 0.00 0.00 0.00 3.86
979 1318 5.239087 TGCCGTGTATCGTTGTACTATCATA 59.761 40.000 0.00 0.00 37.94 2.15
1072 1422 1.022982 CAGCAGCATCTTCGGCTTCA 61.023 55.000 0.00 0.00 40.23 3.02
1225 1578 2.934932 TGGAGCACATGCCCAGGA 60.935 61.111 9.26 0.00 43.38 3.86
1349 1727 2.159043 CGAGCTGTCTCTCTCTCTCTCT 60.159 54.545 0.00 0.00 37.19 3.10
1350 1728 3.462021 GAGCTGTCTCTCTCTCTCTCTC 58.538 54.545 0.00 0.00 36.42 3.20
1351 1729 3.110705 AGCTGTCTCTCTCTCTCTCTCT 58.889 50.000 0.00 0.00 0.00 3.10
1352 1730 3.133721 AGCTGTCTCTCTCTCTCTCTCTC 59.866 52.174 0.00 0.00 0.00 3.20
1353 1731 3.133721 GCTGTCTCTCTCTCTCTCTCTCT 59.866 52.174 0.00 0.00 0.00 3.10
1354 1732 4.383552 GCTGTCTCTCTCTCTCTCTCTCTT 60.384 50.000 0.00 0.00 0.00 2.85
1355 1733 5.163405 GCTGTCTCTCTCTCTCTCTCTCTTA 60.163 48.000 0.00 0.00 0.00 2.10
1356 1734 6.222038 TGTCTCTCTCTCTCTCTCTCTTAC 57.778 45.833 0.00 0.00 0.00 2.34
1357 1735 5.958380 TGTCTCTCTCTCTCTCTCTCTTACT 59.042 44.000 0.00 0.00 0.00 2.24
1561 1951 1.586042 GCCATTAATGCACGCCACG 60.586 57.895 10.11 0.00 0.00 4.94
1562 1952 1.586042 CCATTAATGCACGCCACGC 60.586 57.895 10.11 0.00 0.00 5.34
1563 1953 1.586042 CATTAATGCACGCCACGCC 60.586 57.895 1.74 0.00 0.00 5.68
1564 1954 2.043405 ATTAATGCACGCCACGCCA 61.043 52.632 0.00 0.00 0.00 5.69
1565 1955 2.265073 ATTAATGCACGCCACGCCAC 62.265 55.000 0.00 0.00 0.00 5.01
1594 1984 0.247814 GCGCTGATTCATGTGAACCG 60.248 55.000 0.00 1.12 36.80 4.44
1997 2540 2.313172 GCATATCCAGAGGTGCGCG 61.313 63.158 0.00 0.00 0.00 6.86
2035 2598 2.713895 GATCGATCGATCTCTGCCAA 57.286 50.000 38.45 9.35 45.42 4.52
2068 2640 9.748708 TTTCTTGAAAAATCTAACATTGTGGAG 57.251 29.630 0.00 0.00 0.00 3.86
2078 2650 1.070786 ATTGTGGAGCGGTTCACGT 59.929 52.632 20.49 9.52 46.52 4.49
2216 2788 4.415501 GTGAGACGCGCACGCAAG 62.416 66.667 16.04 1.98 45.53 4.01
2306 3250 2.785679 GCAGTACGCTAGGCAAAAATG 58.214 47.619 0.00 0.00 37.77 2.32
2307 3251 2.785679 CAGTACGCTAGGCAAAAATGC 58.214 47.619 0.00 0.00 0.00 3.56
2308 3252 2.420022 CAGTACGCTAGGCAAAAATGCT 59.580 45.455 0.40 0.00 34.73 3.79
2310 3254 3.871594 AGTACGCTAGGCAAAAATGCTAG 59.128 43.478 0.40 0.00 34.73 3.42
2312 3256 2.678336 ACGCTAGGCAAAAATGCTAGAC 59.322 45.455 0.00 0.00 34.73 2.59
2313 3257 2.032178 CGCTAGGCAAAAATGCTAGACC 59.968 50.000 0.00 0.00 34.73 3.85
2314 3258 3.282885 GCTAGGCAAAAATGCTAGACCT 58.717 45.455 0.00 0.00 34.73 3.85
2315 3259 4.451900 GCTAGGCAAAAATGCTAGACCTA 58.548 43.478 0.00 0.00 34.73 3.08
2316 3260 4.273724 GCTAGGCAAAAATGCTAGACCTAC 59.726 45.833 0.00 0.00 34.73 3.18
2317 3261 4.301072 AGGCAAAAATGCTAGACCTACA 57.699 40.909 0.00 0.00 34.73 2.74
2318 3262 4.265073 AGGCAAAAATGCTAGACCTACAG 58.735 43.478 0.00 0.00 34.73 2.74
2319 3263 4.019321 AGGCAAAAATGCTAGACCTACAGA 60.019 41.667 0.00 0.00 34.73 3.41
2320 3264 4.884164 GGCAAAAATGCTAGACCTACAGAT 59.116 41.667 0.00 0.00 34.73 2.90
2321 3265 5.358160 GGCAAAAATGCTAGACCTACAGATT 59.642 40.000 0.00 0.00 34.73 2.40
2322 3266 6.261118 GCAAAAATGCTAGACCTACAGATTG 58.739 40.000 0.00 0.00 0.00 2.67
2323 3267 6.678900 GCAAAAATGCTAGACCTACAGATTGG 60.679 42.308 0.00 0.00 0.00 3.16
2324 3268 4.696479 AATGCTAGACCTACAGATTGGG 57.304 45.455 0.00 0.00 0.00 4.12
2325 3269 3.116096 TGCTAGACCTACAGATTGGGT 57.884 47.619 0.00 0.00 35.89 4.51
2326 3270 3.450904 TGCTAGACCTACAGATTGGGTT 58.549 45.455 0.00 0.00 33.01 4.11
2327 3271 3.844211 TGCTAGACCTACAGATTGGGTTT 59.156 43.478 0.00 0.00 33.01 3.27
2328 3272 5.027460 TGCTAGACCTACAGATTGGGTTTA 58.973 41.667 0.00 0.00 33.01 2.01
2329 3273 5.105064 TGCTAGACCTACAGATTGGGTTTAC 60.105 44.000 0.00 0.00 33.01 2.01
2330 3274 5.105064 GCTAGACCTACAGATTGGGTTTACA 60.105 44.000 0.00 0.00 33.01 2.41
2331 3275 5.422214 AGACCTACAGATTGGGTTTACAG 57.578 43.478 0.00 0.00 33.01 2.74
2332 3276 4.225267 AGACCTACAGATTGGGTTTACAGG 59.775 45.833 0.00 0.00 33.01 4.00
2333 3277 4.172807 ACCTACAGATTGGGTTTACAGGA 58.827 43.478 0.00 0.00 0.00 3.86
2334 3278 4.600111 ACCTACAGATTGGGTTTACAGGAA 59.400 41.667 0.00 0.00 0.00 3.36
2335 3279 5.186198 CCTACAGATTGGGTTTACAGGAAG 58.814 45.833 0.00 0.00 0.00 3.46
2336 3280 4.724279 ACAGATTGGGTTTACAGGAAGT 57.276 40.909 0.00 0.00 0.00 3.01
2337 3281 5.061721 ACAGATTGGGTTTACAGGAAGTT 57.938 39.130 0.00 0.00 0.00 2.66
2338 3282 6.195600 ACAGATTGGGTTTACAGGAAGTTA 57.804 37.500 0.00 0.00 0.00 2.24
2339 3283 6.002082 ACAGATTGGGTTTACAGGAAGTTAC 58.998 40.000 0.00 0.00 0.00 2.50
2340 3284 5.121768 CAGATTGGGTTTACAGGAAGTTACG 59.878 44.000 0.00 0.00 0.00 3.18
2341 3285 2.769893 TGGGTTTACAGGAAGTTACGC 58.230 47.619 0.00 0.00 0.00 4.42
2342 3286 2.104451 TGGGTTTACAGGAAGTTACGCA 59.896 45.455 0.00 0.00 35.59 5.24
2343 3287 2.481568 GGGTTTACAGGAAGTTACGCAC 59.518 50.000 0.00 0.00 31.36 5.34
2344 3288 2.481568 GGTTTACAGGAAGTTACGCACC 59.518 50.000 0.00 0.00 0.00 5.01
2345 3289 3.132925 GTTTACAGGAAGTTACGCACCA 58.867 45.455 0.00 0.00 0.00 4.17
2346 3290 3.472283 TTACAGGAAGTTACGCACCAA 57.528 42.857 0.00 0.00 0.00 3.67
2347 3291 1.589803 ACAGGAAGTTACGCACCAAC 58.410 50.000 0.00 0.00 0.00 3.77
2348 3292 0.872388 CAGGAAGTTACGCACCAACC 59.128 55.000 0.00 0.00 0.00 3.77
2349 3293 0.250597 AGGAAGTTACGCACCAACCC 60.251 55.000 0.00 0.00 0.00 4.11
2350 3294 0.250597 GGAAGTTACGCACCAACCCT 60.251 55.000 0.00 0.00 0.00 4.34
2351 3295 1.601166 GAAGTTACGCACCAACCCTT 58.399 50.000 0.00 0.00 0.00 3.95
2352 3296 1.534163 GAAGTTACGCACCAACCCTTC 59.466 52.381 0.00 0.00 0.00 3.46
2353 3297 0.763035 AGTTACGCACCAACCCTTCT 59.237 50.000 0.00 0.00 0.00 2.85
2354 3298 1.154197 GTTACGCACCAACCCTTCTC 58.846 55.000 0.00 0.00 0.00 2.87
2355 3299 0.035739 TTACGCACCAACCCTTCTCC 59.964 55.000 0.00 0.00 0.00 3.71
2356 3300 1.833787 TACGCACCAACCCTTCTCCC 61.834 60.000 0.00 0.00 0.00 4.30
2357 3301 2.035783 GCACCAACCCTTCTCCCC 59.964 66.667 0.00 0.00 0.00 4.81
2358 3302 2.539081 GCACCAACCCTTCTCCCCT 61.539 63.158 0.00 0.00 0.00 4.79
2359 3303 1.685820 CACCAACCCTTCTCCCCTC 59.314 63.158 0.00 0.00 0.00 4.30
2360 3304 1.133809 CACCAACCCTTCTCCCCTCA 61.134 60.000 0.00 0.00 0.00 3.86
2361 3305 1.134438 ACCAACCCTTCTCCCCTCAC 61.134 60.000 0.00 0.00 0.00 3.51
2362 3306 0.842467 CCAACCCTTCTCCCCTCACT 60.842 60.000 0.00 0.00 0.00 3.41
2363 3307 1.554822 CCAACCCTTCTCCCCTCACTA 60.555 57.143 0.00 0.00 0.00 2.74
2364 3308 2.266279 CAACCCTTCTCCCCTCACTAA 58.734 52.381 0.00 0.00 0.00 2.24
2365 3309 2.846827 CAACCCTTCTCCCCTCACTAAT 59.153 50.000 0.00 0.00 0.00 1.73
2366 3310 2.765502 ACCCTTCTCCCCTCACTAATC 58.234 52.381 0.00 0.00 0.00 1.75
2367 3311 2.319438 ACCCTTCTCCCCTCACTAATCT 59.681 50.000 0.00 0.00 0.00 2.40
2368 3312 2.969262 CCCTTCTCCCCTCACTAATCTC 59.031 54.545 0.00 0.00 0.00 2.75
2369 3313 3.374762 CCCTTCTCCCCTCACTAATCTCT 60.375 52.174 0.00 0.00 0.00 3.10
2370 3314 3.895041 CCTTCTCCCCTCACTAATCTCTC 59.105 52.174 0.00 0.00 0.00 3.20
2371 3315 3.603965 TCTCCCCTCACTAATCTCTCC 57.396 52.381 0.00 0.00 0.00 3.71
2372 3316 2.178106 TCTCCCCTCACTAATCTCTCCC 59.822 54.545 0.00 0.00 0.00 4.30
2373 3317 1.220750 TCCCCTCACTAATCTCTCCCC 59.779 57.143 0.00 0.00 0.00 4.81
2374 3318 1.723288 CCCTCACTAATCTCTCCCCC 58.277 60.000 0.00 0.00 0.00 5.40
2375 3319 1.221781 CCCTCACTAATCTCTCCCCCT 59.778 57.143 0.00 0.00 0.00 4.79
2376 3320 2.324541 CCTCACTAATCTCTCCCCCTG 58.675 57.143 0.00 0.00 0.00 4.45
2377 3321 2.091055 CCTCACTAATCTCTCCCCCTGA 60.091 54.545 0.00 0.00 0.00 3.86
2378 3322 3.439260 CCTCACTAATCTCTCCCCCTGAT 60.439 52.174 0.00 0.00 0.00 2.90
2379 3323 4.230455 CTCACTAATCTCTCCCCCTGATT 58.770 47.826 0.00 0.00 35.08 2.57
2380 3324 4.635473 TCACTAATCTCTCCCCCTGATTT 58.365 43.478 0.00 0.00 33.24 2.17
2381 3325 5.039645 TCACTAATCTCTCCCCCTGATTTT 58.960 41.667 0.00 0.00 33.24 1.82
2382 3326 5.492524 TCACTAATCTCTCCCCCTGATTTTT 59.507 40.000 0.00 0.00 33.24 1.94
2383 3327 6.676632 TCACTAATCTCTCCCCCTGATTTTTA 59.323 38.462 0.00 0.00 33.24 1.52
2384 3328 6.995091 CACTAATCTCTCCCCCTGATTTTTAG 59.005 42.308 0.00 0.00 33.24 1.85
2385 3329 5.394562 AATCTCTCCCCCTGATTTTTAGG 57.605 43.478 0.00 0.00 35.01 2.69
2393 3337 2.735151 CCTGATTTTTAGGGTGGGTCC 58.265 52.381 0.00 0.00 0.00 4.46
2394 3338 2.365582 CTGATTTTTAGGGTGGGTCCG 58.634 52.381 0.00 0.00 37.00 4.79
2395 3339 1.004979 TGATTTTTAGGGTGGGTCCGG 59.995 52.381 0.00 0.00 37.00 5.14
2396 3340 0.323999 ATTTTTAGGGTGGGTCCGGC 60.324 55.000 0.00 0.00 37.00 6.13
2397 3341 2.429235 TTTTTAGGGTGGGTCCGGCC 62.429 60.000 0.00 0.36 37.00 6.13
2398 3342 3.876255 TTTAGGGTGGGTCCGGCCT 62.876 63.158 13.58 7.93 37.43 5.19
2399 3343 4.791069 TAGGGTGGGTCCGGCCTC 62.791 72.222 13.58 0.00 37.43 4.70
2402 3346 4.176752 GGTGGGTCCGGCCTCATC 62.177 72.222 13.58 0.00 37.43 2.92
2403 3347 3.083997 GTGGGTCCGGCCTCATCT 61.084 66.667 13.58 0.00 37.43 2.90
2404 3348 1.760875 GTGGGTCCGGCCTCATCTA 60.761 63.158 13.58 0.00 37.43 1.98
2405 3349 1.002403 TGGGTCCGGCCTCATCTAA 59.998 57.895 13.58 0.00 37.43 2.10
2406 3350 0.399949 TGGGTCCGGCCTCATCTAAT 60.400 55.000 13.58 0.00 37.43 1.73
2407 3351 0.321996 GGGTCCGGCCTCATCTAATC 59.678 60.000 13.58 0.00 37.43 1.75
2408 3352 1.048601 GGTCCGGCCTCATCTAATCA 58.951 55.000 0.00 0.00 0.00 2.57
2409 3353 1.270358 GGTCCGGCCTCATCTAATCAC 60.270 57.143 0.00 0.00 0.00 3.06
2410 3354 1.048601 TCCGGCCTCATCTAATCACC 58.951 55.000 0.00 0.00 0.00 4.02
2411 3355 0.758734 CCGGCCTCATCTAATCACCA 59.241 55.000 0.00 0.00 0.00 4.17
2412 3356 1.140852 CCGGCCTCATCTAATCACCAA 59.859 52.381 0.00 0.00 0.00 3.67
2413 3357 2.224621 CCGGCCTCATCTAATCACCAAT 60.225 50.000 0.00 0.00 0.00 3.16
2414 3358 3.480470 CGGCCTCATCTAATCACCAATT 58.520 45.455 0.00 0.00 0.00 2.32
2415 3359 4.504864 CCGGCCTCATCTAATCACCAATTA 60.505 45.833 0.00 0.00 0.00 1.40
2416 3360 5.063204 CGGCCTCATCTAATCACCAATTAA 58.937 41.667 0.00 0.00 29.44 1.40
2417 3361 5.530915 CGGCCTCATCTAATCACCAATTAAA 59.469 40.000 0.00 0.00 29.44 1.52
2418 3362 6.039270 CGGCCTCATCTAATCACCAATTAAAA 59.961 38.462 0.00 0.00 29.44 1.52
2419 3363 7.203218 GGCCTCATCTAATCACCAATTAAAAC 58.797 38.462 0.00 0.00 29.44 2.43
2420 3364 7.147915 GGCCTCATCTAATCACCAATTAAAACA 60.148 37.037 0.00 0.00 29.44 2.83
2421 3365 8.250332 GCCTCATCTAATCACCAATTAAAACAA 58.750 33.333 0.00 0.00 29.44 2.83
2422 3366 9.573133 CCTCATCTAATCACCAATTAAAACAAC 57.427 33.333 0.00 0.00 29.44 3.32
2423 3367 9.573133 CTCATCTAATCACCAATTAAAACAACC 57.427 33.333 0.00 0.00 29.44 3.77
2424 3368 8.527810 TCATCTAATCACCAATTAAAACAACCC 58.472 33.333 0.00 0.00 29.44 4.11
2425 3369 7.841282 TCTAATCACCAATTAAAACAACCCA 57.159 32.000 0.00 0.00 29.44 4.51
2426 3370 7.662897 TCTAATCACCAATTAAAACAACCCAC 58.337 34.615 0.00 0.00 29.44 4.61
2427 3371 4.674281 TCACCAATTAAAACAACCCACC 57.326 40.909 0.00 0.00 0.00 4.61
2428 3372 4.290942 TCACCAATTAAAACAACCCACCT 58.709 39.130 0.00 0.00 0.00 4.00
2429 3373 4.717280 TCACCAATTAAAACAACCCACCTT 59.283 37.500 0.00 0.00 0.00 3.50
2430 3374 5.897824 TCACCAATTAAAACAACCCACCTTA 59.102 36.000 0.00 0.00 0.00 2.69
2431 3375 6.041069 TCACCAATTAAAACAACCCACCTTAG 59.959 38.462 0.00 0.00 0.00 2.18
2432 3376 5.221561 ACCAATTAAAACAACCCACCTTAGC 60.222 40.000 0.00 0.00 0.00 3.09
2433 3377 5.234752 CAATTAAAACAACCCACCTTAGCC 58.765 41.667 0.00 0.00 0.00 3.93
2434 3378 2.767644 AAAACAACCCACCTTAGCCT 57.232 45.000 0.00 0.00 0.00 4.58
2435 3379 2.767644 AAACAACCCACCTTAGCCTT 57.232 45.000 0.00 0.00 0.00 4.35
2436 3380 1.995376 AACAACCCACCTTAGCCTTG 58.005 50.000 0.00 0.00 0.00 3.61
2437 3381 0.539669 ACAACCCACCTTAGCCTTGC 60.540 55.000 0.00 0.00 0.00 4.01
2438 3382 1.076727 AACCCACCTTAGCCTTGCC 59.923 57.895 0.00 0.00 0.00 4.52
2439 3383 1.435346 AACCCACCTTAGCCTTGCCT 61.435 55.000 0.00 0.00 0.00 4.75
2440 3384 1.379044 CCCACCTTAGCCTTGCCTG 60.379 63.158 0.00 0.00 0.00 4.85
2441 3385 1.380302 CCACCTTAGCCTTGCCTGT 59.620 57.895 0.00 0.00 0.00 4.00
2442 3386 0.618458 CCACCTTAGCCTTGCCTGTA 59.382 55.000 0.00 0.00 0.00 2.74
2443 3387 1.004277 CCACCTTAGCCTTGCCTGTAA 59.996 52.381 0.00 0.00 0.00 2.41
2444 3388 2.554344 CCACCTTAGCCTTGCCTGTAAA 60.554 50.000 0.00 0.00 0.00 2.01
2445 3389 3.153919 CACCTTAGCCTTGCCTGTAAAA 58.846 45.455 0.00 0.00 0.00 1.52
2446 3390 3.191371 CACCTTAGCCTTGCCTGTAAAAG 59.809 47.826 0.00 0.00 0.00 2.27
2447 3391 3.181433 ACCTTAGCCTTGCCTGTAAAAGT 60.181 43.478 0.00 0.00 0.00 2.66
2448 3392 3.440522 CCTTAGCCTTGCCTGTAAAAGTC 59.559 47.826 0.00 0.00 0.00 3.01
2449 3393 1.523758 AGCCTTGCCTGTAAAAGTCG 58.476 50.000 0.00 0.00 0.00 4.18
2450 3394 1.202770 AGCCTTGCCTGTAAAAGTCGT 60.203 47.619 0.00 0.00 0.00 4.34
2451 3395 1.069227 GCCTTGCCTGTAAAAGTCGTG 60.069 52.381 0.00 0.00 0.00 4.35
2452 3396 2.218603 CCTTGCCTGTAAAAGTCGTGT 58.781 47.619 0.00 0.00 0.00 4.49
2453 3397 3.395639 CCTTGCCTGTAAAAGTCGTGTA 58.604 45.455 0.00 0.00 0.00 2.90
2454 3398 3.810941 CCTTGCCTGTAAAAGTCGTGTAA 59.189 43.478 0.00 0.00 0.00 2.41
2455 3399 4.273969 CCTTGCCTGTAAAAGTCGTGTAAA 59.726 41.667 0.00 0.00 0.00 2.01
2456 3400 5.220892 CCTTGCCTGTAAAAGTCGTGTAAAA 60.221 40.000 0.00 0.00 0.00 1.52
2457 3401 5.159399 TGCCTGTAAAAGTCGTGTAAAAC 57.841 39.130 0.00 0.00 0.00 2.43
2458 3402 4.634883 TGCCTGTAAAAGTCGTGTAAAACA 59.365 37.500 0.00 0.00 0.00 2.83
2459 3403 4.965762 GCCTGTAAAAGTCGTGTAAAACAC 59.034 41.667 0.01 0.01 45.26 3.32
2460 3404 5.504392 CCTGTAAAAGTCGTGTAAAACACC 58.496 41.667 4.69 0.00 45.93 4.16
2461 3405 5.482686 TGTAAAAGTCGTGTAAAACACCC 57.517 39.130 4.69 0.00 45.93 4.61
2462 3406 3.678915 AAAAGTCGTGTAAAACACCCG 57.321 42.857 4.69 0.00 45.93 5.28
2463 3407 2.314323 AAGTCGTGTAAAACACCCGT 57.686 45.000 4.69 0.00 45.93 5.28
2516 4026 0.456312 GCGTACTTCTCCAGACACCG 60.456 60.000 0.00 0.00 0.00 4.94
2551 4066 1.060937 GCCGCATTTACGCTCTGTG 59.939 57.895 0.00 0.00 0.00 3.66
2567 4087 4.682787 CTCTGTGACATGGCGACTTAATA 58.317 43.478 0.00 0.00 0.00 0.98
2686 4206 2.840102 CAGAGCCTACTCCCCCGG 60.840 72.222 0.00 0.00 44.65 5.73
2790 4313 2.125147 CCACCATGCCATCGTCGT 60.125 61.111 0.00 0.00 0.00 4.34
2828 4354 4.475135 GCCTTCGACAGCTCCCCC 62.475 72.222 0.00 0.00 0.00 5.40
2878 4409 5.400703 CAGATCATGATCAGGACGTGATAG 58.599 45.833 31.99 3.48 46.64 2.08
2879 4410 5.182760 CAGATCATGATCAGGACGTGATAGA 59.817 44.000 31.99 9.48 46.64 1.98
2904 4437 2.691732 CCTACCGGTCTACCCCCA 59.308 66.667 12.40 0.00 0.00 4.96
2909 4442 0.111061 ACCGGTCTACCCCCAAAAAC 59.889 55.000 0.00 0.00 0.00 2.43
2910 4443 0.402887 CCGGTCTACCCCCAAAAACT 59.597 55.000 0.00 0.00 0.00 2.66
2948 4485 2.431601 GTCTCTTCTGTGCGCGCT 60.432 61.111 33.29 0.00 0.00 5.92
2953 4493 3.135382 CTTCTGTGCGCGCTCATCG 62.135 63.158 32.76 22.96 42.12 3.84
2989 4530 1.336795 GGGCAAGTCAAATGGTTTCGG 60.337 52.381 0.00 0.00 0.00 4.30
3067 4609 4.127040 CAGCGCGCTCTGGAGTCT 62.127 66.667 34.28 3.67 0.00 3.24
3068 4610 4.127040 AGCGCGCTCTGGAGTCTG 62.127 66.667 31.32 0.00 0.00 3.51
3070 4612 3.443925 CGCGCTCTGGAGTCTGGA 61.444 66.667 5.56 0.00 0.00 3.86
3097 4639 3.258372 ACAAGAGAGCAAAGACGTCCATA 59.742 43.478 13.01 0.00 0.00 2.74
3120 4702 3.297134 TGGATGAATAAACAGGGAGCC 57.703 47.619 0.00 0.00 0.00 4.70
3138 4720 2.813179 CGTAGGCAGCGACAATGGC 61.813 63.158 0.00 0.00 43.18 4.40
3181 4763 1.926510 GTTTTGCGCAAAGACAAAGCT 59.073 42.857 31.88 0.00 37.11 3.74
3226 4808 4.879545 GCCCGAAAATATAAAGACAGTGGA 59.120 41.667 0.00 0.00 0.00 4.02
3227 4809 5.355910 GCCCGAAAATATAAAGACAGTGGAA 59.644 40.000 0.00 0.00 0.00 3.53
3245 4827 3.244526 TGGAACAATGCAAGAGCTAGTGA 60.245 43.478 0.00 0.00 37.15 3.41
3274 4856 4.101741 ACTGACTGTCCTAGCTCTGTTTTT 59.898 41.667 5.17 0.00 0.00 1.94
3275 4857 4.632153 TGACTGTCCTAGCTCTGTTTTTC 58.368 43.478 5.17 0.00 0.00 2.29
3276 4858 4.345257 TGACTGTCCTAGCTCTGTTTTTCT 59.655 41.667 5.17 0.00 0.00 2.52
3277 4859 5.538813 TGACTGTCCTAGCTCTGTTTTTCTA 59.461 40.000 5.17 0.00 0.00 2.10
3278 4860 6.041637 TGACTGTCCTAGCTCTGTTTTTCTAA 59.958 38.462 5.17 0.00 0.00 2.10
3279 4861 6.224584 ACTGTCCTAGCTCTGTTTTTCTAAC 58.775 40.000 0.00 0.00 0.00 2.34
3280 4862 6.169557 TGTCCTAGCTCTGTTTTTCTAACA 57.830 37.500 0.00 0.00 0.00 2.41
3281 4863 6.223852 TGTCCTAGCTCTGTTTTTCTAACAG 58.776 40.000 10.58 10.58 46.67 3.16
3282 4864 5.639931 GTCCTAGCTCTGTTTTTCTAACAGG 59.360 44.000 15.36 8.90 45.66 4.00
3283 4865 5.542635 TCCTAGCTCTGTTTTTCTAACAGGA 59.457 40.000 15.36 4.47 45.66 3.86
3284 4866 6.213600 TCCTAGCTCTGTTTTTCTAACAGGAT 59.786 38.462 15.36 9.01 45.66 3.24
3285 4867 7.399191 TCCTAGCTCTGTTTTTCTAACAGGATA 59.601 37.037 15.36 9.52 45.66 2.59
3286 4868 7.708752 CCTAGCTCTGTTTTTCTAACAGGATAG 59.291 40.741 15.36 15.78 45.66 2.08
3287 4869 6.410540 AGCTCTGTTTTTCTAACAGGATAGG 58.589 40.000 15.36 5.16 45.66 2.57
3288 4870 6.213600 AGCTCTGTTTTTCTAACAGGATAGGA 59.786 38.462 15.36 0.00 45.66 2.94
3289 4871 6.536941 GCTCTGTTTTTCTAACAGGATAGGAG 59.463 42.308 15.36 7.55 45.66 3.69
3290 4872 6.407202 TCTGTTTTTCTAACAGGATAGGAGC 58.593 40.000 15.36 0.00 45.66 4.70
3291 4873 5.497474 TGTTTTTCTAACAGGATAGGAGCC 58.503 41.667 0.00 0.00 0.00 4.70
3292 4874 5.013704 TGTTTTTCTAACAGGATAGGAGCCA 59.986 40.000 0.00 0.00 0.00 4.75
3293 4875 4.755266 TTTCTAACAGGATAGGAGCCAC 57.245 45.455 0.00 0.00 0.00 5.01
3294 4876 2.307768 TCTAACAGGATAGGAGCCACG 58.692 52.381 0.00 0.00 0.00 4.94
3295 4877 1.341531 CTAACAGGATAGGAGCCACGG 59.658 57.143 0.00 0.00 0.00 4.94
3296 4878 0.325296 AACAGGATAGGAGCCACGGA 60.325 55.000 0.00 0.00 0.00 4.69
3297 4879 0.105453 ACAGGATAGGAGCCACGGAT 60.105 55.000 0.00 0.00 0.00 4.18
3298 4880 0.319728 CAGGATAGGAGCCACGGATG 59.680 60.000 0.00 0.00 0.00 3.51
3299 4881 0.188587 AGGATAGGAGCCACGGATGA 59.811 55.000 0.00 0.00 0.00 2.92
3300 4882 0.605589 GGATAGGAGCCACGGATGAG 59.394 60.000 0.00 0.00 0.00 2.90
3301 4883 0.605589 GATAGGAGCCACGGATGAGG 59.394 60.000 0.00 0.00 0.00 3.86
3319 4901 7.043565 GGATGAGGCAAAAACACATATTTGAT 58.956 34.615 0.00 0.00 38.50 2.57
3321 4903 6.397272 TGAGGCAAAAACACATATTTGATCC 58.603 36.000 0.00 0.00 38.50 3.36
3322 4904 5.410067 AGGCAAAAACACATATTTGATCCG 58.590 37.500 0.00 0.00 38.50 4.18
3323 4905 5.184864 AGGCAAAAACACATATTTGATCCGA 59.815 36.000 0.00 0.00 38.50 4.55
3324 4906 5.516339 GGCAAAAACACATATTTGATCCGAG 59.484 40.000 0.00 0.00 38.50 4.63
3365 4948 5.916883 CACAATCTGAACTGCTTTCGAAAAT 59.083 36.000 12.41 0.00 36.97 1.82
3381 4966 3.557595 CGAAAATATCACTGAGCTGACCC 59.442 47.826 0.00 0.00 0.00 4.46
3389 4977 0.902048 CTGAGCTGACCCTGAGTGGA 60.902 60.000 0.00 0.00 38.35 4.02
3391 4979 1.611851 AGCTGACCCTGAGTGGAGG 60.612 63.158 0.00 0.00 38.35 4.30
3406 4994 1.102222 GGAGGCCGACAGATAGACGT 61.102 60.000 0.00 0.00 33.56 4.34
3423 5011 3.254903 AGACGTCACACTATACTGTGCAA 59.745 43.478 19.50 0.00 41.27 4.08
3427 5015 2.029380 TCACACTATACTGTGCAACGCT 60.029 45.455 7.44 0.00 42.39 5.07
3448 5036 3.771160 CTCTTAGGCGCCACCCGT 61.771 66.667 31.54 10.27 40.58 5.28
3497 5085 2.358615 TGGTTGTGCAGCGCCTAG 60.359 61.111 2.29 0.00 0.00 3.02
3584 5278 4.772434 CATCCGATAAAACGTGCCTTATG 58.228 43.478 0.00 0.00 0.00 1.90
3589 5283 5.019498 CGATAAAACGTGCCTTATGTGAAC 58.981 41.667 0.00 0.00 0.00 3.18
3757 5451 4.901849 AGCCATTGACCTATAGCTCTTACA 59.098 41.667 0.00 0.00 0.00 2.41
3786 5480 4.215399 GCAACCTACATGAGTTTTGCACTA 59.785 41.667 16.53 0.00 37.04 2.74
3806 5500 6.090358 GCACTACATAATGTGTACTTTCACGT 59.910 38.462 0.00 0.00 42.29 4.49
3813 5507 1.463444 GTGTACTTTCACGTCATGCCC 59.537 52.381 0.00 0.00 0.00 5.36
3818 5512 1.594194 TTTCACGTCATGCCCATGCC 61.594 55.000 3.41 0.00 38.65 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 182 5.522460 GGTATGCATGTGTAGTTATCAACGT 59.478 40.000 10.16 0.00 36.23 3.99
178 183 5.753438 AGGTATGCATGTGTAGTTATCAACG 59.247 40.000 10.16 0.00 36.23 4.10
179 184 6.986817 AGAGGTATGCATGTGTAGTTATCAAC 59.013 38.462 10.16 0.00 0.00 3.18
244 250 6.013379 TCTCTCTCTCTCTCTTTCTCACTCTT 60.013 42.308 0.00 0.00 0.00 2.85
254 260 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
294 306 2.815158 AGGTGTCTCTCTCTCCCTTTC 58.185 52.381 0.00 0.00 0.00 2.62
375 395 2.168521 CCGCTTATCCTTCTTCTCACCA 59.831 50.000 0.00 0.00 0.00 4.17
385 405 1.904287 TTGTGTTGCCGCTTATCCTT 58.096 45.000 0.00 0.00 0.00 3.36
434 454 6.013032 CCATCACCCAAGATCATAATAGGTCT 60.013 42.308 0.00 0.00 0.00 3.85
466 486 8.500753 AGAAAACATAACACACACTCTTAACA 57.499 30.769 0.00 0.00 0.00 2.41
498 520 2.058829 AAAGAACCCGTGCGTTGCAG 62.059 55.000 0.00 0.00 40.08 4.41
548 570 5.753921 CCCTGTTCTTCTATATCGTGTTTCC 59.246 44.000 0.00 0.00 0.00 3.13
630 657 2.202610 GCGCCGGAATGCTTTTCC 60.203 61.111 5.05 8.48 35.27 3.13
698 733 1.000385 CGAGCAGCCAAATTTTCCACA 60.000 47.619 0.00 0.00 0.00 4.17
761 796 1.485124 GGAGGGTATTTTGGGCAAGG 58.515 55.000 0.00 0.00 0.00 3.61
841 1153 1.380650 GCGGAGGAGGAAGAGGAGT 60.381 63.158 0.00 0.00 0.00 3.85
880 1204 4.459089 GTGCTCCGCCTCTGGTCC 62.459 72.222 0.00 0.00 0.00 4.46
979 1318 2.024273 TCGGTCTCTTCCTTCCTGGTAT 60.024 50.000 0.00 0.00 37.07 2.73
1208 1561 2.488771 CTTCCTGGGCATGTGCTCCA 62.489 60.000 1.86 8.43 41.95 3.86
1285 1659 2.037772 GCACCTTCCATATCCAGTCGAT 59.962 50.000 0.00 0.00 34.73 3.59
1349 1727 3.381908 GGGAGCGAATCAGAAGTAAGAGA 59.618 47.826 0.00 0.00 0.00 3.10
1350 1728 3.712187 GGGAGCGAATCAGAAGTAAGAG 58.288 50.000 0.00 0.00 0.00 2.85
1351 1729 2.099263 CGGGAGCGAATCAGAAGTAAGA 59.901 50.000 0.00 0.00 0.00 2.10
1352 1730 2.159226 ACGGGAGCGAATCAGAAGTAAG 60.159 50.000 0.00 0.00 0.00 2.34
1353 1731 1.822990 ACGGGAGCGAATCAGAAGTAA 59.177 47.619 0.00 0.00 0.00 2.24
1354 1732 1.471119 ACGGGAGCGAATCAGAAGTA 58.529 50.000 0.00 0.00 0.00 2.24
1355 1733 0.608640 AACGGGAGCGAATCAGAAGT 59.391 50.000 0.00 0.00 0.00 3.01
1356 1734 1.281899 GAACGGGAGCGAATCAGAAG 58.718 55.000 0.00 0.00 0.00 2.85
1357 1735 0.457853 CGAACGGGAGCGAATCAGAA 60.458 55.000 0.00 0.00 0.00 3.02
1594 1984 1.352156 CCTCCTGTAAACACGAGCGC 61.352 60.000 0.00 0.00 30.80 5.92
1997 2540 1.349259 CTGCCAAAAAGATGCTGCGC 61.349 55.000 0.00 0.00 0.00 6.09
2002 2545 3.625938 GATCGATCTGCCAAAAAGATGC 58.374 45.455 18.29 0.00 34.50 3.91
2003 2546 3.557185 TCGATCGATCTGCCAAAAAGATG 59.443 43.478 22.43 3.10 34.50 2.90
2004 2547 3.797039 TCGATCGATCTGCCAAAAAGAT 58.203 40.909 22.43 0.00 37.09 2.40
2005 2548 3.245518 TCGATCGATCTGCCAAAAAGA 57.754 42.857 22.43 6.78 0.00 2.52
2041 2611 9.748708 TCCACAATGTTAGATTTTTCAAGAAAG 57.251 29.630 0.00 0.00 0.00 2.62
2045 2615 6.306356 CGCTCCACAATGTTAGATTTTTCAAG 59.694 38.462 0.00 0.00 0.00 3.02
2068 2640 1.082117 CCCTGTCATACGTGAACCGC 61.082 60.000 0.00 0.00 41.42 5.68
2078 2650 1.676678 GGCAGCTCGTCCCTGTCATA 61.677 60.000 0.00 0.00 35.11 2.15
2301 3245 5.044846 ACCCAATCTGTAGGTCTAGCATTTT 60.045 40.000 0.00 0.00 0.00 1.82
2303 3247 4.040755 ACCCAATCTGTAGGTCTAGCATT 58.959 43.478 0.00 0.00 0.00 3.56
2305 3249 3.116096 ACCCAATCTGTAGGTCTAGCA 57.884 47.619 0.00 0.00 0.00 3.49
2306 3250 4.489306 AAACCCAATCTGTAGGTCTAGC 57.511 45.455 0.00 0.00 32.00 3.42
2307 3251 6.407074 CCTGTAAACCCAATCTGTAGGTCTAG 60.407 46.154 0.00 0.00 32.00 2.43
2308 3252 5.424252 CCTGTAAACCCAATCTGTAGGTCTA 59.576 44.000 0.00 0.00 32.00 2.59
2310 3254 4.224370 TCCTGTAAACCCAATCTGTAGGTC 59.776 45.833 0.00 0.00 32.00 3.85
2312 3256 4.837093 TCCTGTAAACCCAATCTGTAGG 57.163 45.455 0.00 0.00 0.00 3.18
2313 3257 5.805728 ACTTCCTGTAAACCCAATCTGTAG 58.194 41.667 0.00 0.00 0.00 2.74
2314 3258 5.836024 ACTTCCTGTAAACCCAATCTGTA 57.164 39.130 0.00 0.00 0.00 2.74
2315 3259 4.724279 ACTTCCTGTAAACCCAATCTGT 57.276 40.909 0.00 0.00 0.00 3.41
2316 3260 5.121768 CGTAACTTCCTGTAAACCCAATCTG 59.878 44.000 0.00 0.00 0.00 2.90
2317 3261 5.243207 CGTAACTTCCTGTAAACCCAATCT 58.757 41.667 0.00 0.00 0.00 2.40
2318 3262 4.142752 GCGTAACTTCCTGTAAACCCAATC 60.143 45.833 0.00 0.00 0.00 2.67
2319 3263 3.754850 GCGTAACTTCCTGTAAACCCAAT 59.245 43.478 0.00 0.00 0.00 3.16
2320 3264 3.140623 GCGTAACTTCCTGTAAACCCAA 58.859 45.455 0.00 0.00 0.00 4.12
2321 3265 2.104451 TGCGTAACTTCCTGTAAACCCA 59.896 45.455 0.00 0.00 0.00 4.51
2322 3266 2.481568 GTGCGTAACTTCCTGTAAACCC 59.518 50.000 0.00 0.00 0.00 4.11
2323 3267 2.481568 GGTGCGTAACTTCCTGTAAACC 59.518 50.000 0.00 0.00 0.00 3.27
2324 3268 3.132925 TGGTGCGTAACTTCCTGTAAAC 58.867 45.455 0.00 0.00 0.00 2.01
2325 3269 3.472283 TGGTGCGTAACTTCCTGTAAA 57.528 42.857 0.00 0.00 0.00 2.01
2326 3270 3.132925 GTTGGTGCGTAACTTCCTGTAA 58.867 45.455 0.00 0.00 0.00 2.41
2327 3271 2.548493 GGTTGGTGCGTAACTTCCTGTA 60.548 50.000 0.00 0.00 0.00 2.74
2328 3272 1.589803 GTTGGTGCGTAACTTCCTGT 58.410 50.000 0.00 0.00 0.00 4.00
2329 3273 0.872388 GGTTGGTGCGTAACTTCCTG 59.128 55.000 0.00 0.00 0.00 3.86
2330 3274 0.250597 GGGTTGGTGCGTAACTTCCT 60.251 55.000 0.00 0.00 0.00 3.36
2331 3275 0.250597 AGGGTTGGTGCGTAACTTCC 60.251 55.000 0.00 0.00 0.00 3.46
2332 3276 1.534163 GAAGGGTTGGTGCGTAACTTC 59.466 52.381 0.00 0.00 0.00 3.01
2333 3277 1.142262 AGAAGGGTTGGTGCGTAACTT 59.858 47.619 0.00 0.00 0.00 2.66
2334 3278 0.763035 AGAAGGGTTGGTGCGTAACT 59.237 50.000 0.00 0.00 0.00 2.24
2335 3279 1.154197 GAGAAGGGTTGGTGCGTAAC 58.846 55.000 0.00 0.00 0.00 2.50
2336 3280 0.035739 GGAGAAGGGTTGGTGCGTAA 59.964 55.000 0.00 0.00 0.00 3.18
2337 3281 1.675219 GGAGAAGGGTTGGTGCGTA 59.325 57.895 0.00 0.00 0.00 4.42
2338 3282 2.430367 GGAGAAGGGTTGGTGCGT 59.570 61.111 0.00 0.00 0.00 5.24
2339 3283 2.359975 GGGAGAAGGGTTGGTGCG 60.360 66.667 0.00 0.00 0.00 5.34
2340 3284 2.035783 GGGGAGAAGGGTTGGTGC 59.964 66.667 0.00 0.00 0.00 5.01
2341 3285 1.133809 TGAGGGGAGAAGGGTTGGTG 61.134 60.000 0.00 0.00 0.00 4.17
2342 3286 1.134438 GTGAGGGGAGAAGGGTTGGT 61.134 60.000 0.00 0.00 0.00 3.67
2343 3287 0.842467 AGTGAGGGGAGAAGGGTTGG 60.842 60.000 0.00 0.00 0.00 3.77
2344 3288 1.952621 TAGTGAGGGGAGAAGGGTTG 58.047 55.000 0.00 0.00 0.00 3.77
2345 3289 2.735259 TTAGTGAGGGGAGAAGGGTT 57.265 50.000 0.00 0.00 0.00 4.11
2346 3290 2.319438 AGATTAGTGAGGGGAGAAGGGT 59.681 50.000 0.00 0.00 0.00 4.34
2347 3291 2.969262 GAGATTAGTGAGGGGAGAAGGG 59.031 54.545 0.00 0.00 0.00 3.95
2348 3292 3.895041 GAGAGATTAGTGAGGGGAGAAGG 59.105 52.174 0.00 0.00 0.00 3.46
2349 3293 3.895041 GGAGAGATTAGTGAGGGGAGAAG 59.105 52.174 0.00 0.00 0.00 2.85
2350 3294 3.374318 GGGAGAGATTAGTGAGGGGAGAA 60.374 52.174 0.00 0.00 0.00 2.87
2351 3295 2.178106 GGGAGAGATTAGTGAGGGGAGA 59.822 54.545 0.00 0.00 0.00 3.71
2352 3296 2.604139 GGGAGAGATTAGTGAGGGGAG 58.396 57.143 0.00 0.00 0.00 4.30
2353 3297 1.220750 GGGGAGAGATTAGTGAGGGGA 59.779 57.143 0.00 0.00 0.00 4.81
2354 3298 1.723288 GGGGAGAGATTAGTGAGGGG 58.277 60.000 0.00 0.00 0.00 4.79
2355 3299 1.221781 AGGGGGAGAGATTAGTGAGGG 59.778 57.143 0.00 0.00 0.00 4.30
2356 3300 2.091055 TCAGGGGGAGAGATTAGTGAGG 60.091 54.545 0.00 0.00 0.00 3.86
2357 3301 3.320610 TCAGGGGGAGAGATTAGTGAG 57.679 52.381 0.00 0.00 0.00 3.51
2358 3302 4.286813 AATCAGGGGGAGAGATTAGTGA 57.713 45.455 0.00 0.00 30.70 3.41
2359 3303 5.379706 AAAATCAGGGGGAGAGATTAGTG 57.620 43.478 0.00 0.00 32.11 2.74
2360 3304 6.101881 CCTAAAAATCAGGGGGAGAGATTAGT 59.898 42.308 0.00 0.00 32.11 2.24
2361 3305 6.538263 CCTAAAAATCAGGGGGAGAGATTAG 58.462 44.000 0.00 0.00 32.11 1.73
2362 3306 6.515512 CCTAAAAATCAGGGGGAGAGATTA 57.484 41.667 0.00 0.00 32.11 1.75
2363 3307 5.394562 CCTAAAAATCAGGGGGAGAGATT 57.605 43.478 0.00 0.00 33.68 2.40
2373 3317 2.735151 GGACCCACCCTAAAAATCAGG 58.265 52.381 0.00 0.00 0.00 3.86
2374 3318 2.365582 CGGACCCACCCTAAAAATCAG 58.634 52.381 0.00 0.00 34.64 2.90
2375 3319 1.004979 CCGGACCCACCCTAAAAATCA 59.995 52.381 0.00 0.00 34.64 2.57
2376 3320 1.758936 CCGGACCCACCCTAAAAATC 58.241 55.000 0.00 0.00 34.64 2.17
2377 3321 0.323999 GCCGGACCCACCCTAAAAAT 60.324 55.000 5.05 0.00 34.64 1.82
2378 3322 1.075305 GCCGGACCCACCCTAAAAA 59.925 57.895 5.05 0.00 34.64 1.94
2379 3323 2.758434 GCCGGACCCACCCTAAAA 59.242 61.111 5.05 0.00 34.64 1.52
2380 3324 3.332385 GGCCGGACCCACCCTAAA 61.332 66.667 5.05 0.00 34.64 1.85
2381 3325 4.342086 AGGCCGGACCCACCCTAA 62.342 66.667 1.76 0.00 40.58 2.69
2382 3326 4.791069 GAGGCCGGACCCACCCTA 62.791 72.222 1.76 0.00 40.58 3.53
2385 3329 4.176752 GATGAGGCCGGACCCACC 62.177 72.222 1.76 0.00 40.58 4.61
2386 3330 1.335132 TTAGATGAGGCCGGACCCAC 61.335 60.000 1.76 0.00 40.58 4.61
2387 3331 0.399949 ATTAGATGAGGCCGGACCCA 60.400 55.000 1.76 0.00 40.58 4.51
2388 3332 0.321996 GATTAGATGAGGCCGGACCC 59.678 60.000 1.76 0.00 40.58 4.46
2389 3333 1.048601 TGATTAGATGAGGCCGGACC 58.951 55.000 1.76 4.96 39.61 4.46
2390 3334 1.270358 GGTGATTAGATGAGGCCGGAC 60.270 57.143 5.05 0.00 0.00 4.79
2391 3335 1.048601 GGTGATTAGATGAGGCCGGA 58.951 55.000 5.05 0.00 0.00 5.14
2392 3336 0.758734 TGGTGATTAGATGAGGCCGG 59.241 55.000 0.00 0.00 0.00 6.13
2393 3337 2.620251 TTGGTGATTAGATGAGGCCG 57.380 50.000 0.00 0.00 0.00 6.13
2394 3338 6.959639 TTTAATTGGTGATTAGATGAGGCC 57.040 37.500 0.00 0.00 32.06 5.19
2395 3339 7.771183 TGTTTTAATTGGTGATTAGATGAGGC 58.229 34.615 0.00 0.00 32.06 4.70
2396 3340 9.573133 GTTGTTTTAATTGGTGATTAGATGAGG 57.427 33.333 0.00 0.00 32.06 3.86
2397 3341 9.573133 GGTTGTTTTAATTGGTGATTAGATGAG 57.427 33.333 0.00 0.00 32.06 2.90
2398 3342 8.527810 GGGTTGTTTTAATTGGTGATTAGATGA 58.472 33.333 0.00 0.00 32.06 2.92
2399 3343 8.310382 TGGGTTGTTTTAATTGGTGATTAGATG 58.690 33.333 0.00 0.00 32.06 2.90
2400 3344 8.311109 GTGGGTTGTTTTAATTGGTGATTAGAT 58.689 33.333 0.00 0.00 32.06 1.98
2401 3345 7.256012 GGTGGGTTGTTTTAATTGGTGATTAGA 60.256 37.037 0.00 0.00 32.06 2.10
2402 3346 6.871492 GGTGGGTTGTTTTAATTGGTGATTAG 59.129 38.462 0.00 0.00 32.06 1.73
2403 3347 6.555360 AGGTGGGTTGTTTTAATTGGTGATTA 59.445 34.615 0.00 0.00 0.00 1.75
2404 3348 5.368230 AGGTGGGTTGTTTTAATTGGTGATT 59.632 36.000 0.00 0.00 0.00 2.57
2405 3349 4.904853 AGGTGGGTTGTTTTAATTGGTGAT 59.095 37.500 0.00 0.00 0.00 3.06
2406 3350 4.290942 AGGTGGGTTGTTTTAATTGGTGA 58.709 39.130 0.00 0.00 0.00 4.02
2407 3351 4.681074 AGGTGGGTTGTTTTAATTGGTG 57.319 40.909 0.00 0.00 0.00 4.17
2408 3352 5.221561 GCTAAGGTGGGTTGTTTTAATTGGT 60.222 40.000 0.00 0.00 0.00 3.67
2409 3353 5.234752 GCTAAGGTGGGTTGTTTTAATTGG 58.765 41.667 0.00 0.00 0.00 3.16
2410 3354 5.011635 AGGCTAAGGTGGGTTGTTTTAATTG 59.988 40.000 0.00 0.00 0.00 2.32
2411 3355 5.152193 AGGCTAAGGTGGGTTGTTTTAATT 58.848 37.500 0.00 0.00 0.00 1.40
2412 3356 4.747583 AGGCTAAGGTGGGTTGTTTTAAT 58.252 39.130 0.00 0.00 0.00 1.40
2413 3357 4.187506 AGGCTAAGGTGGGTTGTTTTAA 57.812 40.909 0.00 0.00 0.00 1.52
2414 3358 3.887916 AGGCTAAGGTGGGTTGTTTTA 57.112 42.857 0.00 0.00 0.00 1.52
2415 3359 2.698274 CAAGGCTAAGGTGGGTTGTTTT 59.302 45.455 0.00 0.00 0.00 2.43
2416 3360 2.316108 CAAGGCTAAGGTGGGTTGTTT 58.684 47.619 0.00 0.00 0.00 2.83
2417 3361 1.995376 CAAGGCTAAGGTGGGTTGTT 58.005 50.000 0.00 0.00 0.00 2.83
2418 3362 0.539669 GCAAGGCTAAGGTGGGTTGT 60.540 55.000 0.00 0.00 0.00 3.32
2419 3363 1.250840 GGCAAGGCTAAGGTGGGTTG 61.251 60.000 0.00 0.00 0.00 3.77
2420 3364 1.076727 GGCAAGGCTAAGGTGGGTT 59.923 57.895 0.00 0.00 0.00 4.11
2421 3365 1.852626 AGGCAAGGCTAAGGTGGGT 60.853 57.895 0.00 0.00 0.00 4.51
2422 3366 1.379044 CAGGCAAGGCTAAGGTGGG 60.379 63.158 0.00 0.00 0.00 4.61
2423 3367 0.618458 TACAGGCAAGGCTAAGGTGG 59.382 55.000 0.00 0.00 0.00 4.61
2424 3368 2.489938 TTACAGGCAAGGCTAAGGTG 57.510 50.000 0.00 0.00 0.00 4.00
2425 3369 3.181433 ACTTTTACAGGCAAGGCTAAGGT 60.181 43.478 0.00 0.00 0.00 3.50
2426 3370 3.421844 ACTTTTACAGGCAAGGCTAAGG 58.578 45.455 0.00 0.00 0.00 2.69
2427 3371 3.125316 CGACTTTTACAGGCAAGGCTAAG 59.875 47.826 0.00 0.00 0.00 2.18
2428 3372 3.071479 CGACTTTTACAGGCAAGGCTAA 58.929 45.455 0.00 0.00 0.00 3.09
2429 3373 2.038033 ACGACTTTTACAGGCAAGGCTA 59.962 45.455 0.00 0.00 0.00 3.93
2430 3374 1.202770 ACGACTTTTACAGGCAAGGCT 60.203 47.619 0.00 0.00 0.00 4.58
2431 3375 1.069227 CACGACTTTTACAGGCAAGGC 60.069 52.381 0.00 0.00 0.00 4.35
2432 3376 2.218603 ACACGACTTTTACAGGCAAGG 58.781 47.619 0.00 0.00 0.00 3.61
2433 3377 5.412526 TTTACACGACTTTTACAGGCAAG 57.587 39.130 0.00 0.00 0.00 4.01
2434 3378 5.123502 TGTTTTACACGACTTTTACAGGCAA 59.876 36.000 0.00 0.00 0.00 4.52
2435 3379 4.634883 TGTTTTACACGACTTTTACAGGCA 59.365 37.500 0.00 0.00 0.00 4.75
2436 3380 4.965762 GTGTTTTACACGACTTTTACAGGC 59.034 41.667 0.00 0.00 39.53 4.85
2450 3394 3.499157 GCAATGACTACGGGTGTTTTACA 59.501 43.478 0.00 0.00 0.00 2.41
2451 3395 3.499157 TGCAATGACTACGGGTGTTTTAC 59.501 43.478 0.00 0.00 0.00 2.01
2452 3396 3.741249 TGCAATGACTACGGGTGTTTTA 58.259 40.909 0.00 0.00 0.00 1.52
2453 3397 2.552315 CTGCAATGACTACGGGTGTTTT 59.448 45.455 0.00 0.00 0.00 2.43
2454 3398 2.151202 CTGCAATGACTACGGGTGTTT 58.849 47.619 0.00 0.00 0.00 2.83
2455 3399 1.071699 ACTGCAATGACTACGGGTGTT 59.928 47.619 0.00 0.00 0.00 3.32
2456 3400 0.685097 ACTGCAATGACTACGGGTGT 59.315 50.000 0.00 0.00 0.00 4.16
2457 3401 1.359848 GACTGCAATGACTACGGGTG 58.640 55.000 0.00 0.00 0.00 4.61
2458 3402 0.108804 CGACTGCAATGACTACGGGT 60.109 55.000 0.00 0.00 0.00 5.28
2459 3403 1.421410 GCGACTGCAATGACTACGGG 61.421 60.000 0.00 0.00 42.15 5.28
2460 3404 1.421410 GGCGACTGCAATGACTACGG 61.421 60.000 0.00 0.00 45.35 4.02
2461 3405 1.421410 GGGCGACTGCAATGACTACG 61.421 60.000 0.00 0.00 45.35 3.51
2462 3406 1.090052 GGGGCGACTGCAATGACTAC 61.090 60.000 0.00 0.00 45.35 2.73
2463 3407 1.220749 GGGGCGACTGCAATGACTA 59.779 57.895 0.00 0.00 45.35 2.59
2516 4026 3.414700 CTCACGCGTTCCCTGCAC 61.415 66.667 10.22 0.00 0.00 4.57
2551 4066 3.871594 ACAAGCTATTAAGTCGCCATGTC 59.128 43.478 0.00 0.00 0.00 3.06
2647 4167 0.451783 CATCAGGCCTGCGGTTTTAC 59.548 55.000 28.91 0.00 0.00 2.01
2771 4291 2.463620 CGACGATGGCATGGTGGTG 61.464 63.158 20.19 5.86 0.00 4.17
2797 4323 3.639541 AAGGCAGAGCTCGCACTCG 62.640 63.158 24.72 7.23 41.77 4.18
2798 4324 1.809209 GAAGGCAGAGCTCGCACTC 60.809 63.158 24.72 17.97 36.91 3.51
2799 4325 2.264166 GAAGGCAGAGCTCGCACT 59.736 61.111 24.72 18.11 0.00 4.40
2800 4326 3.184683 CGAAGGCAGAGCTCGCAC 61.185 66.667 24.72 16.68 0.00 5.34
2801 4327 3.373565 TCGAAGGCAGAGCTCGCA 61.374 61.111 24.72 7.78 32.66 5.10
2812 4338 4.148825 CGGGGGAGCTGTCGAAGG 62.149 72.222 0.00 0.00 0.00 3.46
2828 4354 1.447489 CCTCCTCTTGCTGCTGACG 60.447 63.158 0.00 0.00 0.00 4.35
2860 4386 5.167121 GGAATCTATCACGTCCTGATCATG 58.833 45.833 0.00 0.00 40.38 3.07
2866 4392 3.458189 GGTTGGAATCTATCACGTCCTG 58.542 50.000 0.00 0.00 0.00 3.86
2948 4485 1.419107 CCGAGAGACGACGACGATGA 61.419 60.000 15.32 0.00 45.77 2.92
2953 4493 2.479650 CCACCGAGAGACGACGAC 59.520 66.667 0.00 0.00 45.77 4.34
3008 4549 0.961019 TTCAGCGGCATCAAAAGCTT 59.039 45.000 1.45 0.00 37.94 3.74
3059 4601 2.564504 TCTTGTCATGTCCAGACTCCAG 59.435 50.000 0.00 0.00 36.94 3.86
3064 4606 2.028658 TGCTCTCTTGTCATGTCCAGAC 60.029 50.000 0.00 0.00 36.55 3.51
3065 4607 2.250924 TGCTCTCTTGTCATGTCCAGA 58.749 47.619 0.00 0.00 0.00 3.86
3066 4608 2.756840 TGCTCTCTTGTCATGTCCAG 57.243 50.000 0.00 0.00 0.00 3.86
3067 4609 3.071457 TCTTTGCTCTCTTGTCATGTCCA 59.929 43.478 0.00 0.00 0.00 4.02
3068 4610 3.434984 GTCTTTGCTCTCTTGTCATGTCC 59.565 47.826 0.00 0.00 0.00 4.02
3069 4611 3.122613 CGTCTTTGCTCTCTTGTCATGTC 59.877 47.826 0.00 0.00 0.00 3.06
3070 4612 3.062763 CGTCTTTGCTCTCTTGTCATGT 58.937 45.455 0.00 0.00 0.00 3.21
3097 4639 4.446889 GGCTCCCTGTTTATTCATCCATCT 60.447 45.833 0.00 0.00 0.00 2.90
3120 4702 2.813179 GCCATTGTCGCTGCCTACG 61.813 63.158 0.00 0.00 0.00 3.51
3138 4720 0.882927 TGCTCTTTTGGGAACGACCG 60.883 55.000 0.00 0.00 40.11 4.79
3170 4752 1.267806 CGCATCCACAGCTTTGTCTTT 59.732 47.619 0.00 0.00 0.00 2.52
3181 4763 0.107268 CCCATCTCATCGCATCCACA 59.893 55.000 0.00 0.00 0.00 4.17
3214 4796 5.129634 TCTTGCATTGTTCCACTGTCTTTA 58.870 37.500 0.00 0.00 0.00 1.85
3226 4808 3.743521 TGTCACTAGCTCTTGCATTGTT 58.256 40.909 0.00 0.00 42.74 2.83
3227 4809 3.332919 CTGTCACTAGCTCTTGCATTGT 58.667 45.455 0.00 0.00 42.74 2.71
3245 4827 1.261480 CTAGGACAGTCAGTGCCTGT 58.739 55.000 6.51 6.51 45.52 4.00
3274 4856 2.307768 CGTGGCTCCTATCCTGTTAGA 58.692 52.381 0.00 0.00 0.00 2.10
3275 4857 1.341531 CCGTGGCTCCTATCCTGTTAG 59.658 57.143 0.00 0.00 0.00 2.34
3276 4858 1.063492 TCCGTGGCTCCTATCCTGTTA 60.063 52.381 0.00 0.00 0.00 2.41
3277 4859 0.325296 TCCGTGGCTCCTATCCTGTT 60.325 55.000 0.00 0.00 0.00 3.16
3278 4860 0.105453 ATCCGTGGCTCCTATCCTGT 60.105 55.000 0.00 0.00 0.00 4.00
3279 4861 0.319728 CATCCGTGGCTCCTATCCTG 59.680 60.000 0.00 0.00 0.00 3.86
3280 4862 0.188587 TCATCCGTGGCTCCTATCCT 59.811 55.000 0.00 0.00 0.00 3.24
3281 4863 0.605589 CTCATCCGTGGCTCCTATCC 59.394 60.000 0.00 0.00 0.00 2.59
3282 4864 0.605589 CCTCATCCGTGGCTCCTATC 59.394 60.000 0.00 0.00 0.00 2.08
3283 4865 1.476007 GCCTCATCCGTGGCTCCTAT 61.476 60.000 0.00 0.00 46.30 2.57
3284 4866 2.134287 GCCTCATCCGTGGCTCCTA 61.134 63.158 0.00 0.00 46.30 2.94
3285 4867 3.474570 GCCTCATCCGTGGCTCCT 61.475 66.667 0.00 0.00 46.30 3.69
3290 4872 0.958091 TGTTTTTGCCTCATCCGTGG 59.042 50.000 0.00 0.00 0.00 4.94
3291 4873 1.336440 TGTGTTTTTGCCTCATCCGTG 59.664 47.619 0.00 0.00 0.00 4.94
3292 4874 1.686355 TGTGTTTTTGCCTCATCCGT 58.314 45.000 0.00 0.00 0.00 4.69
3293 4875 4.637483 ATATGTGTTTTTGCCTCATCCG 57.363 40.909 0.00 0.00 0.00 4.18
3294 4876 6.397272 TCAAATATGTGTTTTTGCCTCATCC 58.603 36.000 0.00 0.00 33.77 3.51
3295 4877 7.223387 GGATCAAATATGTGTTTTTGCCTCATC 59.777 37.037 0.00 0.00 33.77 2.92
3296 4878 7.043565 GGATCAAATATGTGTTTTTGCCTCAT 58.956 34.615 0.00 0.00 33.77 2.90
3297 4879 6.397272 GGATCAAATATGTGTTTTTGCCTCA 58.603 36.000 0.00 0.00 33.77 3.86
3298 4880 5.516339 CGGATCAAATATGTGTTTTTGCCTC 59.484 40.000 0.00 0.00 33.77 4.70
3299 4881 5.184864 TCGGATCAAATATGTGTTTTTGCCT 59.815 36.000 0.00 0.00 33.77 4.75
3300 4882 5.406649 TCGGATCAAATATGTGTTTTTGCC 58.593 37.500 0.00 0.00 33.77 4.52
3301 4883 5.516339 CCTCGGATCAAATATGTGTTTTTGC 59.484 40.000 0.00 0.00 33.77 3.68
3302 4884 6.851609 TCCTCGGATCAAATATGTGTTTTTG 58.148 36.000 0.00 0.00 34.80 2.44
3319 4901 1.624336 TTCTTTTCGTCCTCCTCGGA 58.376 50.000 0.00 0.00 40.30 4.55
3321 4903 3.368236 GTGAATTCTTTTCGTCCTCCTCG 59.632 47.826 7.05 0.00 0.00 4.63
3322 4904 4.315803 TGTGAATTCTTTTCGTCCTCCTC 58.684 43.478 7.05 0.00 0.00 3.71
3323 4905 4.351874 TGTGAATTCTTTTCGTCCTCCT 57.648 40.909 7.05 0.00 0.00 3.69
3324 4906 5.412904 AGATTGTGAATTCTTTTCGTCCTCC 59.587 40.000 7.05 0.00 0.00 4.30
3365 4948 2.291865 ACTCAGGGTCAGCTCAGTGATA 60.292 50.000 0.00 0.00 0.00 2.15
3381 4966 1.326213 ATCTGTCGGCCTCCACTCAG 61.326 60.000 0.00 0.44 0.00 3.35
3389 4977 0.393944 TGACGTCTATCTGTCGGCCT 60.394 55.000 17.92 0.00 37.94 5.19
3391 4979 0.450583 TGTGACGTCTATCTGTCGGC 59.549 55.000 17.92 0.00 37.94 5.54
3423 5011 2.125512 CGCCTAAGAGCCAAGCGT 60.126 61.111 0.00 0.00 41.78 5.07
3473 5061 1.227943 GCTGCACAACCAGGAGTGA 60.228 57.895 17.52 5.39 37.97 3.41
3497 5085 1.082690 GTAGTGCAGCTCCTTTCAGC 58.917 55.000 0.00 0.00 39.99 4.26
3538 5231 6.183360 TGCACGGATTAAAAGTTACAACAGTT 60.183 34.615 0.00 0.00 0.00 3.16
3539 5232 5.297278 TGCACGGATTAAAAGTTACAACAGT 59.703 36.000 0.00 0.00 0.00 3.55
3540 5233 5.753744 TGCACGGATTAAAAGTTACAACAG 58.246 37.500 0.00 0.00 0.00 3.16
3541 5234 5.752892 TGCACGGATTAAAAGTTACAACA 57.247 34.783 0.00 0.00 0.00 3.33
3542 5235 5.798434 GGATGCACGGATTAAAAGTTACAAC 59.202 40.000 0.00 0.00 0.00 3.32
3543 5236 5.391097 CGGATGCACGGATTAAAAGTTACAA 60.391 40.000 0.00 0.00 0.00 2.41
3544 5237 4.093703 CGGATGCACGGATTAAAAGTTACA 59.906 41.667 0.00 0.00 0.00 2.41
3545 5238 4.330620 TCGGATGCACGGATTAAAAGTTAC 59.669 41.667 0.00 0.00 0.00 2.50
3546 5239 4.505808 TCGGATGCACGGATTAAAAGTTA 58.494 39.130 0.00 0.00 0.00 2.24
3547 5240 3.340034 TCGGATGCACGGATTAAAAGTT 58.660 40.909 0.00 0.00 0.00 2.66
3548 5241 2.980568 TCGGATGCACGGATTAAAAGT 58.019 42.857 0.00 0.00 0.00 2.66
3604 5298 3.055747 TGCCACCATTATGTAGAACACGA 60.056 43.478 0.00 0.00 0.00 4.35
3616 5310 7.658525 AACATAGATGAAAATGCCACCATTA 57.341 32.000 0.00 0.00 40.69 1.90
3786 5480 6.402118 GCATGACGTGAAAGTACACATTATGT 60.402 38.462 0.00 0.00 46.06 2.29
3813 5507 3.572682 AGATGATTAACATGGCAGGCATG 59.427 43.478 30.44 30.44 39.56 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.