Multiple sequence alignment - TraesCS5B01G244000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G244000 chr5B 100.000 2745 0 0 541 3285 425573719 425576463 0.000000e+00 5070
1 TraesCS5B01G244000 chr5B 100.000 143 0 0 1 143 425573179 425573321 6.990000e-67 265
2 TraesCS5B01G244000 chr5D 91.332 1719 82 33 541 2234 360141034 360142710 0.000000e+00 2287
3 TraesCS5B01G244000 chr5D 84.094 723 98 12 2336 3053 360143157 360143867 0.000000e+00 682
4 TraesCS5B01G244000 chr5D 95.652 92 4 0 52 143 360140846 360140937 7.340000e-32 148
5 TraesCS5B01G244000 chr5A 93.070 1241 59 14 986 2203 461073041 461074277 0.000000e+00 1790
6 TraesCS5B01G244000 chr5A 92.625 339 13 4 541 875 461072707 461073037 8.250000e-131 477
7 TraesCS5B01G244000 chr5A 84.971 173 26 0 2881 3053 461075044 461075216 3.370000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G244000 chr5B 425573179 425576463 3284 False 2667.500000 5070 100.000000 1 3285 2 chr5B.!!$F1 3284
1 TraesCS5B01G244000 chr5D 360140846 360143867 3021 False 1039.000000 2287 90.359333 52 3053 3 chr5D.!!$F1 3001
2 TraesCS5B01G244000 chr5A 461072707 461075216 2509 False 814.333333 1790 90.222000 541 3053 3 chr5A.!!$F1 2512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.033781 TGGAAGCCAAAAGTGCATGC 59.966 50.0 11.82 11.82 0.00 4.06 F
875 882 0.462047 GGTGACCCGGTCATCATCAC 60.462 60.0 23.72 10.58 44.63 3.06 F
2025 2062 0.244450 ATTTGCAAGCATGACCACCG 59.756 50.0 0.00 0.00 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2026 0.962356 AATTGTGGAAGCCGCTGAGG 60.962 55.0 0.0 0.0 44.97 3.86 R
2203 2247 0.107848 CACGACCTTCCCCGCTAAAT 60.108 55.0 0.0 0.0 0.00 1.40 R
2978 3370 0.034896 ACTTGGTCGGGCTTAGTGTG 59.965 55.0 0.0 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.133281 TGAGGGCACATCAATGGAAG 57.867 50.000 0.00 0.00 0.00 3.46
20 21 0.743097 GAGGGCACATCAATGGAAGC 59.257 55.000 0.00 0.00 0.00 3.86
21 22 0.685458 AGGGCACATCAATGGAAGCC 60.685 55.000 12.27 12.27 40.93 4.35
22 23 0.971959 GGGCACATCAATGGAAGCCA 60.972 55.000 18.61 0.00 42.35 4.75
23 24 0.896923 GGCACATCAATGGAAGCCAA 59.103 50.000 14.54 0.00 41.15 4.52
24 25 1.275856 GGCACATCAATGGAAGCCAAA 59.724 47.619 14.54 0.00 41.15 3.28
25 26 2.289569 GGCACATCAATGGAAGCCAAAA 60.290 45.455 14.54 0.00 41.15 2.44
26 27 2.997986 GCACATCAATGGAAGCCAAAAG 59.002 45.455 0.00 0.00 36.95 2.27
27 28 3.555586 GCACATCAATGGAAGCCAAAAGT 60.556 43.478 0.00 0.00 36.95 2.66
28 29 3.991773 CACATCAATGGAAGCCAAAAGTG 59.008 43.478 0.00 0.00 36.95 3.16
29 30 2.818130 TCAATGGAAGCCAAAAGTGC 57.182 45.000 0.00 0.00 36.95 4.40
30 31 2.037901 TCAATGGAAGCCAAAAGTGCA 58.962 42.857 0.00 0.00 36.95 4.57
31 32 2.633967 TCAATGGAAGCCAAAAGTGCAT 59.366 40.909 0.00 0.00 36.95 3.96
32 33 2.739913 CAATGGAAGCCAAAAGTGCATG 59.260 45.455 0.00 0.00 36.95 4.06
33 34 0.033781 TGGAAGCCAAAAGTGCATGC 59.966 50.000 11.82 11.82 0.00 4.06
34 35 0.033781 GGAAGCCAAAAGTGCATGCA 59.966 50.000 18.46 18.46 0.00 3.96
35 36 1.338389 GGAAGCCAAAAGTGCATGCAT 60.338 47.619 25.64 5.67 0.00 3.96
36 37 1.730064 GAAGCCAAAAGTGCATGCATG 59.270 47.619 25.64 22.70 0.00 4.06
37 38 0.682852 AGCCAAAAGTGCATGCATGT 59.317 45.000 25.64 11.91 0.00 3.21
38 39 1.894466 AGCCAAAAGTGCATGCATGTA 59.106 42.857 25.64 20.88 0.00 2.29
39 40 2.094390 AGCCAAAAGTGCATGCATGTAG 60.094 45.455 25.64 12.79 0.00 2.74
40 41 2.094597 GCCAAAAGTGCATGCATGTAGA 60.095 45.455 25.64 9.58 0.00 2.59
41 42 3.429822 GCCAAAAGTGCATGCATGTAGAT 60.430 43.478 25.64 12.09 0.00 1.98
42 43 4.751060 CCAAAAGTGCATGCATGTAGATT 58.249 39.130 25.64 17.00 0.00 2.40
43 44 4.565166 CCAAAAGTGCATGCATGTAGATTG 59.435 41.667 25.64 23.00 0.00 2.67
44 45 5.165676 CAAAAGTGCATGCATGTAGATTGT 58.834 37.500 25.64 12.97 0.00 2.71
45 46 4.627611 AAGTGCATGCATGTAGATTGTC 57.372 40.909 25.64 10.27 0.00 3.18
46 47 3.882444 AGTGCATGCATGTAGATTGTCT 58.118 40.909 25.64 12.35 0.00 3.41
47 48 3.875727 AGTGCATGCATGTAGATTGTCTC 59.124 43.478 25.64 5.79 0.00 3.36
48 49 3.624410 GTGCATGCATGTAGATTGTCTCA 59.376 43.478 25.64 10.03 0.00 3.27
49 50 4.095334 GTGCATGCATGTAGATTGTCTCAA 59.905 41.667 25.64 0.00 0.00 3.02
50 51 4.701171 TGCATGCATGTAGATTGTCTCAAA 59.299 37.500 26.79 0.00 0.00 2.69
51 52 5.032863 GCATGCATGTAGATTGTCTCAAAC 58.967 41.667 26.79 1.51 0.00 2.93
52 53 4.926860 TGCATGTAGATTGTCTCAAACG 57.073 40.909 0.00 0.00 0.00 3.60
53 54 4.314961 TGCATGTAGATTGTCTCAAACGT 58.685 39.130 0.00 0.00 0.00 3.99
54 55 4.152223 TGCATGTAGATTGTCTCAAACGTG 59.848 41.667 0.00 0.00 34.53 4.49
55 56 4.436050 GCATGTAGATTGTCTCAAACGTGG 60.436 45.833 0.00 0.00 33.17 4.94
56 57 4.330944 TGTAGATTGTCTCAAACGTGGT 57.669 40.909 0.00 0.00 0.00 4.16
57 58 5.456548 TGTAGATTGTCTCAAACGTGGTA 57.543 39.130 0.00 0.00 0.00 3.25
58 59 5.466819 TGTAGATTGTCTCAAACGTGGTAG 58.533 41.667 0.00 0.00 0.00 3.18
59 60 3.326747 AGATTGTCTCAAACGTGGTAGC 58.673 45.455 0.00 0.00 0.00 3.58
60 61 1.873698 TTGTCTCAAACGTGGTAGCC 58.126 50.000 0.00 0.00 0.00 3.93
61 62 1.045407 TGTCTCAAACGTGGTAGCCT 58.955 50.000 0.00 0.00 0.00 4.58
80 81 2.087009 GTAGCGTGACCGAGTGCAC 61.087 63.158 9.40 9.40 35.63 4.57
84 85 1.080501 CGTGACCGAGTGCACTGAT 60.081 57.895 27.27 9.15 35.63 2.90
559 560 2.080654 TTAAAAACCAGCAGGCCTGT 57.919 45.000 32.81 17.48 40.06 4.00
742 743 1.598130 AGCGACAAACCACTCCAGC 60.598 57.895 0.00 0.00 0.00 4.85
784 785 4.033776 CTCCCACCACGGCACCAT 62.034 66.667 0.00 0.00 0.00 3.55
875 882 0.462047 GGTGACCCGGTCATCATCAC 60.462 60.000 23.72 10.58 44.63 3.06
881 888 1.597742 CCGGTCATCATCACAATCCC 58.402 55.000 0.00 0.00 0.00 3.85
884 891 2.213499 GGTCATCATCACAATCCCGAC 58.787 52.381 0.00 0.00 0.00 4.79
914 921 5.812642 GGTTCGGTAGATTATATCATGGCAG 59.187 44.000 0.00 0.00 0.00 4.85
935 942 3.807538 CGTGCCATGTGAGCTGCC 61.808 66.667 0.00 0.00 0.00 4.85
937 944 2.674033 TGCCATGTGAGCTGCCAC 60.674 61.111 12.44 12.44 37.55 5.01
1098 1108 2.892425 CGTTCTGCTGCGGATCCC 60.892 66.667 12.67 2.85 0.00 3.85
1423 1442 3.187700 GTGAGTGCTAACCTAATCACCG 58.812 50.000 0.00 0.00 32.78 4.94
1466 1491 4.866921 TGGATTAATACGTCTGACCGATG 58.133 43.478 1.55 0.00 34.71 3.84
1763 1792 2.230750 ACTACAAGGTACGCTCCAGTTC 59.769 50.000 0.00 0.00 0.00 3.01
1778 1807 2.288825 CCAGTTCTTACTCTGGTTGCGA 60.289 50.000 3.38 0.00 44.19 5.10
1779 1808 2.731976 CAGTTCTTACTCTGGTTGCGAC 59.268 50.000 0.00 0.00 30.26 5.19
1782 1811 4.219944 AGTTCTTACTCTGGTTGCGACATA 59.780 41.667 6.39 0.00 0.00 2.29
1789 1826 3.734463 TCTGGTTGCGACATAGTTTTGA 58.266 40.909 6.39 0.00 0.00 2.69
1792 1829 3.745975 TGGTTGCGACATAGTTTTGAGAG 59.254 43.478 6.39 0.00 0.00 3.20
1796 1833 3.679980 TGCGACATAGTTTTGAGAGAAGC 59.320 43.478 0.00 0.00 0.00 3.86
1820 1857 0.677288 TCGTGGATGAACTGAACGGT 59.323 50.000 0.00 0.00 35.08 4.83
2007 2044 1.377725 CCTCAGCGGCTTCCACAAT 60.378 57.895 0.00 0.00 0.00 2.71
2008 2045 0.962356 CCTCAGCGGCTTCCACAATT 60.962 55.000 0.00 0.00 0.00 2.32
2016 2053 1.540797 GGCTTCCACAATTTGCAAGCA 60.541 47.619 20.95 0.00 41.09 3.91
2021 2058 2.070783 CCACAATTTGCAAGCATGACC 58.929 47.619 13.15 0.00 0.00 4.02
2024 2061 2.070783 CAATTTGCAAGCATGACCACC 58.929 47.619 0.00 0.00 0.00 4.61
2025 2062 0.244450 ATTTGCAAGCATGACCACCG 59.756 50.000 0.00 0.00 0.00 4.94
2070 2114 2.616842 GGTCTGTGGTACTGGTGTTTTG 59.383 50.000 0.00 0.00 0.00 2.44
2082 2126 1.272212 GGTGTTTTGGCCAATCGTCAT 59.728 47.619 21.26 0.00 0.00 3.06
2102 2146 1.444119 GCGTGGGAGTGTTTCTGCAA 61.444 55.000 0.00 0.00 36.18 4.08
2121 2165 6.939730 TCTGCAATTCCTACTGTTTTCATGTA 59.060 34.615 0.00 0.00 0.00 2.29
2122 2166 7.611467 TCTGCAATTCCTACTGTTTTCATGTAT 59.389 33.333 0.00 0.00 0.00 2.29
2150 2194 2.052690 GGTGCAGAGGAGCCGAGTA 61.053 63.158 0.00 0.00 0.00 2.59
2184 2228 4.142945 GCTGTTTACTGAGAGCATTCACAG 60.143 45.833 0.00 0.00 44.56 3.66
2203 2247 9.996554 ATTCACAGGATCGTGACAATATTATTA 57.003 29.630 21.63 0.00 45.36 0.98
2204 2248 9.996554 TTCACAGGATCGTGACAATATTATTAT 57.003 29.630 21.63 0.00 45.36 1.28
2210 2254 9.901724 GGATCGTGACAATATTATTATTTAGCG 57.098 33.333 0.00 0.00 0.00 4.26
2211 2255 9.901724 GATCGTGACAATATTATTATTTAGCGG 57.098 33.333 0.00 0.00 0.00 5.52
2213 2257 7.332430 TCGTGACAATATTATTATTTAGCGGGG 59.668 37.037 0.00 0.00 0.00 5.73
2214 2258 7.332430 CGTGACAATATTATTATTTAGCGGGGA 59.668 37.037 0.00 0.00 0.00 4.81
2215 2259 9.005777 GTGACAATATTATTATTTAGCGGGGAA 57.994 33.333 0.00 0.00 0.00 3.97
2217 2261 8.575649 ACAATATTATTATTTAGCGGGGAAGG 57.424 34.615 0.00 0.00 0.00 3.46
2239 2528 2.539688 TCGTGACAATATTGATGCGAGC 59.460 45.455 22.16 4.20 0.00 5.03
2244 2533 5.228635 GTGACAATATTGATGCGAGCAAAAG 59.771 40.000 22.16 0.00 0.00 2.27
2256 2545 3.989817 GCGAGCAAAAGTTTGGAAATCAT 59.010 39.130 5.95 0.00 38.57 2.45
2258 2547 5.613142 GCGAGCAAAAGTTTGGAAATCATTG 60.613 40.000 5.95 0.00 38.57 2.82
2277 2566 9.425248 AATCATTGTATCCACATAATGTCCTTT 57.575 29.630 0.00 0.00 33.76 3.11
2278 2567 8.224389 TCATTGTATCCACATAATGTCCTTTG 57.776 34.615 0.00 0.00 33.76 2.77
2286 2575 5.278907 CCACATAATGTCCTTTGCAGACAAA 60.279 40.000 10.87 3.98 46.67 2.83
2287 2576 6.215121 CACATAATGTCCTTTGCAGACAAAA 58.785 36.000 10.87 3.67 46.67 2.44
2288 2577 6.700960 CACATAATGTCCTTTGCAGACAAAAA 59.299 34.615 10.87 1.53 46.67 1.94
2336 2625 7.476540 AAAATTACATGGTTAGGAACTTCCC 57.523 36.000 4.01 0.00 41.75 3.97
2338 2627 5.431179 TTACATGGTTAGGAACTTCCCTC 57.569 43.478 4.01 0.00 41.75 4.30
2339 2628 2.236395 ACATGGTTAGGAACTTCCCTCG 59.764 50.000 4.01 0.00 41.75 4.63
2347 2661 0.670854 GAACTTCCCTCGCTGTGTCC 60.671 60.000 0.00 0.00 0.00 4.02
2356 2670 2.260154 CGCTGTGTCCACAATGGCA 61.260 57.895 1.30 0.00 41.33 4.92
2358 2672 0.604578 GCTGTGTCCACAATGGCAAT 59.395 50.000 1.30 0.00 41.33 3.56
2364 2678 4.621832 CACAATGGCAATTGGGGC 57.378 55.556 18.12 0.00 46.34 5.80
2426 2814 3.573489 GACGTTGCGCAAACCTCCG 62.573 63.158 26.87 24.70 35.13 4.63
2449 2837 4.631813 GCGGTCATAATCTCTGAGTTTTGT 59.368 41.667 4.32 0.00 0.00 2.83
2484 2872 1.406069 GCACATTGAGGAGACCGACAT 60.406 52.381 0.00 0.00 0.00 3.06
2487 2875 4.503910 CACATTGAGGAGACCGACATAAA 58.496 43.478 0.00 0.00 0.00 1.40
2502 2890 5.440685 CGACATAAACTTCAAGTTCACCAC 58.559 41.667 2.45 0.00 37.47 4.16
2503 2891 5.007234 CGACATAAACTTCAAGTTCACCACA 59.993 40.000 2.45 0.00 37.47 4.17
2514 2902 2.139917 GTTCACCACAACGTATGAGCA 58.860 47.619 1.39 0.00 0.00 4.26
2517 2905 3.407698 TCACCACAACGTATGAGCAAAT 58.592 40.909 1.39 0.00 0.00 2.32
2600 2988 6.269769 TGAGATGATATGGGTTGCTATGTGTA 59.730 38.462 0.00 0.00 0.00 2.90
2605 2993 8.165239 TGATATGGGTTGCTATGTGTAATTTC 57.835 34.615 0.00 0.00 0.00 2.17
2607 2995 6.849085 ATGGGTTGCTATGTGTAATTTCAA 57.151 33.333 0.00 0.00 0.00 2.69
2623 3011 9.593134 TGTAATTTCAAACAAATATACCATGCC 57.407 29.630 0.00 0.00 0.00 4.40
2624 3012 9.040939 GTAATTTCAAACAAATATACCATGCCC 57.959 33.333 0.00 0.00 0.00 5.36
2625 3013 6.611613 TTTCAAACAAATATACCATGCCCA 57.388 33.333 0.00 0.00 0.00 5.36
2626 3014 5.590530 TCAAACAAATATACCATGCCCAC 57.409 39.130 0.00 0.00 0.00 4.61
2627 3015 5.268387 TCAAACAAATATACCATGCCCACT 58.732 37.500 0.00 0.00 0.00 4.00
2658 3046 1.502231 CGAAACATGGATAGGAGCCG 58.498 55.000 0.00 0.00 0.00 5.52
2659 3047 1.873903 CGAAACATGGATAGGAGCCGG 60.874 57.143 0.00 0.00 0.00 6.13
2667 3055 4.122337 TGGATAGGAGCCGGATAAACTA 57.878 45.455 5.05 2.70 0.00 2.24
2682 3070 0.331616 AACTATTTTCGGGCAGCCCT 59.668 50.000 28.80 11.84 42.67 5.19
2734 3122 0.814010 ACACCCGTCACTTCACTTGC 60.814 55.000 0.00 0.00 0.00 4.01
2743 3131 3.057736 GTCACTTCACTTGCTGCAATGAT 60.058 43.478 16.38 1.77 0.00 2.45
2759 3147 2.282887 ATCGTGCAAACCCCACCC 60.283 61.111 0.00 0.00 0.00 4.61
2764 3152 2.600470 GCAAACCCCACCCTGTCC 60.600 66.667 0.00 0.00 0.00 4.02
2781 3169 3.565307 TGTCCAAGCTTGACTCCATTTT 58.435 40.909 28.05 0.00 0.00 1.82
2788 3176 3.830755 AGCTTGACTCCATTTTCTGCAAT 59.169 39.130 0.00 0.00 0.00 3.56
2792 3180 2.231964 GACTCCATTTTCTGCAATGCCA 59.768 45.455 1.53 0.00 33.42 4.92
2809 3197 6.539324 CAATGCCAAATGTGACATTCATTTC 58.461 36.000 11.70 0.94 41.58 2.17
2828 3216 2.481441 TCCACTCCCATGTGCTCTATT 58.519 47.619 0.00 0.00 36.68 1.73
2832 3220 3.110705 ACTCCCATGTGCTCTATTCACT 58.889 45.455 0.00 0.00 35.58 3.41
2833 3221 3.521126 ACTCCCATGTGCTCTATTCACTT 59.479 43.478 0.00 0.00 35.58 3.16
2834 3222 3.875727 CTCCCATGTGCTCTATTCACTTG 59.124 47.826 0.00 0.00 38.53 3.16
2839 3231 3.674997 TGTGCTCTATTCACTTGTTCCC 58.325 45.455 0.00 0.00 35.58 3.97
2844 3236 4.161377 GCTCTATTCACTTGTTCCCTCTCT 59.839 45.833 0.00 0.00 0.00 3.10
2850 3242 4.099633 TCACTTGTTCCCTCTCTGATCAT 58.900 43.478 0.00 0.00 0.00 2.45
2864 3256 3.054948 TCTGATCATTGTCCACTGATGCA 60.055 43.478 5.03 0.00 31.92 3.96
2873 3265 1.652563 CACTGATGCATGCCGATGG 59.347 57.895 16.68 4.29 0.00 3.51
2878 3270 1.134128 TGATGCATGCCGATGGTAGTT 60.134 47.619 16.68 0.00 0.00 2.24
2879 3271 1.949525 GATGCATGCCGATGGTAGTTT 59.050 47.619 16.68 0.00 0.00 2.66
2886 3278 0.251916 CCGATGGTAGTTTGCCCTCA 59.748 55.000 0.00 0.00 0.00 3.86
2899 3291 2.683916 CCCTCAGAGGCCTTGTACA 58.316 57.895 6.77 0.00 32.73 2.90
2940 3332 1.299648 CGTCCATCCTGGGCTTCAA 59.700 57.895 0.00 0.00 40.79 2.69
2941 3333 0.107017 CGTCCATCCTGGGCTTCAAT 60.107 55.000 0.00 0.00 40.79 2.57
2942 3334 1.683011 CGTCCATCCTGGGCTTCAATT 60.683 52.381 0.00 0.00 40.79 2.32
2943 3335 2.027385 GTCCATCCTGGGCTTCAATTC 58.973 52.381 0.00 0.00 39.55 2.17
2945 3337 2.029623 CCATCCTGGGCTTCAATTCTG 58.970 52.381 0.00 0.00 32.67 3.02
2953 3345 1.200948 GGCTTCAATTCTGTGGTGCTC 59.799 52.381 0.00 0.00 0.00 4.26
2972 3364 2.555325 CTCAAAGCTTGGAATGAGCACA 59.445 45.455 11.83 0.00 42.56 4.57
2978 3370 0.310543 TTGGAATGAGCACACAACGC 59.689 50.000 0.00 0.00 0.00 4.84
2984 3376 0.179097 TGAGCACACAACGCACACTA 60.179 50.000 0.00 0.00 0.00 2.74
3025 3417 5.900865 TCCACAAGTTTAAGAAAAACGGT 57.099 34.783 0.00 0.00 35.42 4.83
3026 3418 6.998968 TCCACAAGTTTAAGAAAAACGGTA 57.001 33.333 0.00 0.00 35.42 4.02
3030 3422 7.916450 CCACAAGTTTAAGAAAAACGGTATGAA 59.084 33.333 0.00 0.00 35.42 2.57
3032 3424 8.895737 ACAAGTTTAAGAAAAACGGTATGAAGA 58.104 29.630 0.00 0.00 35.42 2.87
3037 3429 9.496873 TTTAAGAAAAACGGTATGAAGATCTCA 57.503 29.630 0.00 0.00 38.81 3.27
3048 3440 7.093988 CGGTATGAAGATCTCAGAATGGAGTAT 60.094 40.741 0.00 0.00 37.52 2.12
3053 3445 7.450014 TGAAGATCTCAGAATGGAGTATAGGTC 59.550 40.741 0.00 0.00 36.30 3.85
3054 3446 7.102518 AGATCTCAGAATGGAGTATAGGTCT 57.897 40.000 0.00 0.00 36.30 3.85
3055 3447 8.225863 AGATCTCAGAATGGAGTATAGGTCTA 57.774 38.462 0.00 0.00 36.30 2.59
3056 3448 8.845793 AGATCTCAGAATGGAGTATAGGTCTAT 58.154 37.037 0.00 0.00 36.30 1.98
3057 3449 9.474313 GATCTCAGAATGGAGTATAGGTCTATT 57.526 37.037 0.00 0.00 36.30 1.73
3058 3450 9.836179 ATCTCAGAATGGAGTATAGGTCTATTT 57.164 33.333 0.00 0.00 36.30 1.40
3059 3451 9.083422 TCTCAGAATGGAGTATAGGTCTATTTG 57.917 37.037 0.00 0.00 36.30 2.32
3060 3452 7.671302 TCAGAATGGAGTATAGGTCTATTTGC 58.329 38.462 0.00 0.00 36.16 3.68
3061 3453 6.876257 CAGAATGGAGTATAGGTCTATTTGCC 59.124 42.308 0.00 0.00 0.00 4.52
3062 3454 6.558775 AGAATGGAGTATAGGTCTATTTGCCA 59.441 38.462 0.00 0.00 0.00 4.92
3063 3455 5.808366 TGGAGTATAGGTCTATTTGCCAG 57.192 43.478 0.00 0.00 0.00 4.85
3064 3456 5.464069 TGGAGTATAGGTCTATTTGCCAGA 58.536 41.667 0.00 0.00 0.00 3.86
3065 3457 6.084738 TGGAGTATAGGTCTATTTGCCAGAT 58.915 40.000 0.00 0.00 0.00 2.90
3066 3458 6.211584 TGGAGTATAGGTCTATTTGCCAGATC 59.788 42.308 0.00 0.00 0.00 2.75
3067 3459 6.351456 GGAGTATAGGTCTATTTGCCAGATCC 60.351 46.154 0.00 0.00 0.00 3.36
3068 3460 6.084738 AGTATAGGTCTATTTGCCAGATCCA 58.915 40.000 0.00 0.00 0.00 3.41
3069 3461 5.912149 ATAGGTCTATTTGCCAGATCCAA 57.088 39.130 0.00 0.00 0.00 3.53
3070 3462 4.162040 AGGTCTATTTGCCAGATCCAAG 57.838 45.455 0.00 0.00 0.00 3.61
3071 3463 3.782523 AGGTCTATTTGCCAGATCCAAGA 59.217 43.478 0.00 0.00 0.00 3.02
3072 3464 4.414846 AGGTCTATTTGCCAGATCCAAGAT 59.585 41.667 0.00 0.00 0.00 2.40
3073 3465 4.759183 GGTCTATTTGCCAGATCCAAGATC 59.241 45.833 0.00 0.00 0.00 2.75
3074 3466 4.759183 GTCTATTTGCCAGATCCAAGATCC 59.241 45.833 0.99 0.00 0.00 3.36
3075 3467 3.675348 ATTTGCCAGATCCAAGATCCA 57.325 42.857 0.99 0.00 0.00 3.41
3076 3468 2.425143 TTGCCAGATCCAAGATCCAC 57.575 50.000 0.99 0.00 0.00 4.02
3077 3469 0.548031 TGCCAGATCCAAGATCCACC 59.452 55.000 0.99 0.00 0.00 4.61
3078 3470 0.842635 GCCAGATCCAAGATCCACCT 59.157 55.000 0.99 0.00 0.00 4.00
3079 3471 1.213926 GCCAGATCCAAGATCCACCTT 59.786 52.381 0.99 0.00 0.00 3.50
3080 3472 2.747799 GCCAGATCCAAGATCCACCTTC 60.748 54.545 0.99 0.00 0.00 3.46
3081 3473 2.507058 CCAGATCCAAGATCCACCTTCA 59.493 50.000 0.99 0.00 0.00 3.02
3082 3474 3.137913 CCAGATCCAAGATCCACCTTCAT 59.862 47.826 0.99 0.00 0.00 2.57
3083 3475 4.135306 CAGATCCAAGATCCACCTTCATG 58.865 47.826 0.99 0.00 0.00 3.07
3084 3476 2.425143 TCCAAGATCCACCTTCATGC 57.575 50.000 0.00 0.00 0.00 4.06
3085 3477 1.064463 TCCAAGATCCACCTTCATGCC 60.064 52.381 0.00 0.00 0.00 4.40
3086 3478 1.341285 CCAAGATCCACCTTCATGCCA 60.341 52.381 0.00 0.00 0.00 4.92
3087 3479 1.747355 CAAGATCCACCTTCATGCCAC 59.253 52.381 0.00 0.00 0.00 5.01
3088 3480 0.994247 AGATCCACCTTCATGCCACA 59.006 50.000 0.00 0.00 0.00 4.17
3089 3481 1.098050 GATCCACCTTCATGCCACAC 58.902 55.000 0.00 0.00 0.00 3.82
3090 3482 0.700564 ATCCACCTTCATGCCACACT 59.299 50.000 0.00 0.00 0.00 3.55
3091 3483 1.357137 TCCACCTTCATGCCACACTA 58.643 50.000 0.00 0.00 0.00 2.74
3092 3484 1.003118 TCCACCTTCATGCCACACTAC 59.997 52.381 0.00 0.00 0.00 2.73
3093 3485 1.003580 CCACCTTCATGCCACACTACT 59.996 52.381 0.00 0.00 0.00 2.57
3094 3486 2.553028 CCACCTTCATGCCACACTACTT 60.553 50.000 0.00 0.00 0.00 2.24
3095 3487 2.485426 CACCTTCATGCCACACTACTTG 59.515 50.000 0.00 0.00 0.00 3.16
3096 3488 2.106511 ACCTTCATGCCACACTACTTGT 59.893 45.455 0.00 0.00 39.97 3.16
3097 3489 2.744202 CCTTCATGCCACACTACTTGTC 59.256 50.000 0.00 0.00 35.67 3.18
3098 3490 3.402110 CTTCATGCCACACTACTTGTCA 58.598 45.455 0.00 0.00 35.67 3.58
3099 3491 3.701205 TCATGCCACACTACTTGTCAT 57.299 42.857 0.00 0.00 35.67 3.06
3100 3492 3.599343 TCATGCCACACTACTTGTCATC 58.401 45.455 0.00 0.00 35.67 2.92
3101 3493 2.472695 TGCCACACTACTTGTCATCC 57.527 50.000 0.00 0.00 35.67 3.51
3102 3494 1.977854 TGCCACACTACTTGTCATCCT 59.022 47.619 0.00 0.00 35.67 3.24
3103 3495 2.371841 TGCCACACTACTTGTCATCCTT 59.628 45.455 0.00 0.00 35.67 3.36
3104 3496 3.003480 GCCACACTACTTGTCATCCTTC 58.997 50.000 0.00 0.00 35.67 3.46
3105 3497 3.254060 CCACACTACTTGTCATCCTTCG 58.746 50.000 0.00 0.00 35.67 3.79
3106 3498 2.668457 CACACTACTTGTCATCCTTCGC 59.332 50.000 0.00 0.00 35.67 4.70
3107 3499 2.271800 CACTACTTGTCATCCTTCGCC 58.728 52.381 0.00 0.00 0.00 5.54
3108 3500 2.093973 CACTACTTGTCATCCTTCGCCT 60.094 50.000 0.00 0.00 0.00 5.52
3109 3501 2.567615 ACTACTTGTCATCCTTCGCCTT 59.432 45.455 0.00 0.00 0.00 4.35
3110 3502 1.813513 ACTTGTCATCCTTCGCCTTG 58.186 50.000 0.00 0.00 0.00 3.61
3111 3503 1.347707 ACTTGTCATCCTTCGCCTTGA 59.652 47.619 0.00 0.00 0.00 3.02
3112 3504 1.734465 CTTGTCATCCTTCGCCTTGAC 59.266 52.381 0.00 0.00 39.11 3.18
3113 3505 0.036388 TGTCATCCTTCGCCTTGACC 60.036 55.000 0.00 0.00 38.12 4.02
3114 3506 0.744771 GTCATCCTTCGCCTTGACCC 60.745 60.000 0.00 0.00 33.91 4.46
3115 3507 1.198094 TCATCCTTCGCCTTGACCCA 61.198 55.000 0.00 0.00 0.00 4.51
3116 3508 0.322456 CATCCTTCGCCTTGACCCAA 60.322 55.000 0.00 0.00 0.00 4.12
3117 3509 0.035056 ATCCTTCGCCTTGACCCAAG 60.035 55.000 0.00 0.00 40.75 3.61
3118 3510 1.125093 TCCTTCGCCTTGACCCAAGA 61.125 55.000 8.16 0.00 43.42 3.02
3119 3511 0.674895 CCTTCGCCTTGACCCAAGAG 60.675 60.000 8.16 2.87 43.42 2.85
3120 3512 0.321671 CTTCGCCTTGACCCAAGAGA 59.678 55.000 8.16 4.92 43.42 3.10
3121 3513 0.762418 TTCGCCTTGACCCAAGAGAA 59.238 50.000 8.16 9.79 43.42 2.87
3122 3514 0.984230 TCGCCTTGACCCAAGAGAAT 59.016 50.000 8.16 0.00 43.42 2.40
3123 3515 1.066143 TCGCCTTGACCCAAGAGAATC 60.066 52.381 8.16 0.00 43.42 2.52
3124 3516 1.373570 GCCTTGACCCAAGAGAATCG 58.626 55.000 8.16 0.00 43.42 3.34
3125 3517 1.066143 GCCTTGACCCAAGAGAATCGA 60.066 52.381 8.16 0.00 43.42 3.59
3126 3518 2.622436 CCTTGACCCAAGAGAATCGAC 58.378 52.381 8.16 0.00 43.42 4.20
3127 3519 2.028112 CCTTGACCCAAGAGAATCGACA 60.028 50.000 8.16 0.00 43.42 4.35
3128 3520 3.369892 CCTTGACCCAAGAGAATCGACAT 60.370 47.826 8.16 0.00 43.42 3.06
3129 3521 3.526931 TGACCCAAGAGAATCGACATC 57.473 47.619 0.00 0.00 42.67 3.06
3130 3522 3.099905 TGACCCAAGAGAATCGACATCT 58.900 45.455 2.36 2.36 42.67 2.90
3131 3523 3.515502 TGACCCAAGAGAATCGACATCTT 59.484 43.478 4.23 3.82 42.67 2.40
3132 3524 4.020218 TGACCCAAGAGAATCGACATCTTT 60.020 41.667 4.23 0.00 42.67 2.52
3133 3525 4.508662 ACCCAAGAGAATCGACATCTTTC 58.491 43.478 4.23 0.00 42.67 2.62
3134 3526 4.020218 ACCCAAGAGAATCGACATCTTTCA 60.020 41.667 4.23 0.00 42.67 2.69
3135 3527 4.937620 CCCAAGAGAATCGACATCTTTCAA 59.062 41.667 4.23 0.00 42.67 2.69
3136 3528 5.412594 CCCAAGAGAATCGACATCTTTCAAA 59.587 40.000 4.23 0.00 42.67 2.69
3137 3529 6.094603 CCCAAGAGAATCGACATCTTTCAAAT 59.905 38.462 4.23 0.00 42.67 2.32
3138 3530 6.965500 CCAAGAGAATCGACATCTTTCAAATG 59.035 38.462 4.23 0.00 42.67 2.32
3139 3531 7.148356 CCAAGAGAATCGACATCTTTCAAATGA 60.148 37.037 4.23 0.00 42.67 2.57
3140 3532 7.301068 AGAGAATCGACATCTTTCAAATGAC 57.699 36.000 4.23 0.00 42.67 3.06
3141 3533 6.035435 AGAGAATCGACATCTTTCAAATGACG 59.965 38.462 4.23 2.43 42.67 4.35
3144 3536 3.367932 TCGACATCTTTCAAATGACGAGC 59.632 43.478 6.58 0.00 42.96 5.03
3145 3537 3.369147 CGACATCTTTCAAATGACGAGCT 59.631 43.478 0.00 0.00 42.23 4.09
3146 3538 4.143030 CGACATCTTTCAAATGACGAGCTT 60.143 41.667 0.00 0.00 42.23 3.74
3147 3539 5.039480 ACATCTTTCAAATGACGAGCTTG 57.961 39.130 0.00 0.00 0.00 4.01
3148 3540 4.756642 ACATCTTTCAAATGACGAGCTTGA 59.243 37.500 8.31 0.00 0.00 3.02
3149 3541 4.997905 TCTTTCAAATGACGAGCTTGAG 57.002 40.909 8.31 0.00 31.11 3.02
3150 3542 3.187227 TCTTTCAAATGACGAGCTTGAGC 59.813 43.478 8.31 0.00 42.49 4.26
3166 3558 6.727824 GCTTGAGCTCTACACATCTAAAAA 57.272 37.500 16.19 0.00 38.21 1.94
3197 3589 6.814076 GTCAGTTTGACCGTTATCTAGATG 57.186 41.667 15.79 0.79 41.37 2.90
3198 3590 6.331061 GTCAGTTTGACCGTTATCTAGATGT 58.669 40.000 15.79 4.29 41.37 3.06
3199 3591 6.472808 GTCAGTTTGACCGTTATCTAGATGTC 59.527 42.308 15.79 13.57 41.37 3.06
3200 3592 6.152154 TCAGTTTGACCGTTATCTAGATGTCA 59.848 38.462 15.79 15.86 0.00 3.58
3201 3593 6.253727 CAGTTTGACCGTTATCTAGATGTCAC 59.746 42.308 18.37 11.11 32.91 3.67
3202 3594 5.907866 TTGACCGTTATCTAGATGTCACA 57.092 39.130 18.37 10.36 32.91 3.58
3203 3595 6.465439 TTGACCGTTATCTAGATGTCACAT 57.535 37.500 18.37 0.00 32.91 3.21
3204 3596 7.576861 TTGACCGTTATCTAGATGTCACATA 57.423 36.000 18.37 6.46 32.91 2.29
3205 3597 7.576861 TGACCGTTATCTAGATGTCACATAA 57.423 36.000 15.79 0.00 0.00 1.90
3206 3598 8.002984 TGACCGTTATCTAGATGTCACATAAA 57.997 34.615 15.79 0.00 0.00 1.40
3207 3599 8.471609 TGACCGTTATCTAGATGTCACATAAAA 58.528 33.333 15.79 0.00 0.00 1.52
3208 3600 9.309516 GACCGTTATCTAGATGTCACATAAAAA 57.690 33.333 15.79 0.00 0.00 1.94
3209 3601 9.832445 ACCGTTATCTAGATGTCACATAAAAAT 57.168 29.630 15.79 0.00 0.00 1.82
3211 3603 9.586150 CGTTATCTAGATGTCACATAAAAATGC 57.414 33.333 15.79 0.00 0.00 3.56
3215 3607 9.961265 ATCTAGATGTCACATAAAAATGCAATG 57.039 29.630 3.89 0.00 0.00 2.82
3216 3608 6.897259 AGATGTCACATAAAAATGCAATGC 57.103 33.333 0.00 0.00 0.00 3.56
3217 3609 5.517411 AGATGTCACATAAAAATGCAATGCG 59.483 36.000 0.00 0.00 0.00 4.73
3218 3610 3.925299 TGTCACATAAAAATGCAATGCGG 59.075 39.130 0.00 0.00 0.00 5.69
3219 3611 2.928757 TCACATAAAAATGCAATGCGGC 59.071 40.909 0.00 0.00 0.00 6.53
3220 3612 2.030701 CACATAAAAATGCAATGCGGCC 59.969 45.455 0.00 0.00 0.00 6.13
3221 3613 2.277969 CATAAAAATGCAATGCGGCCA 58.722 42.857 2.24 0.00 0.00 5.36
3222 3614 1.719600 TAAAAATGCAATGCGGCCAC 58.280 45.000 2.24 0.00 0.00 5.01
3223 3615 0.250209 AAAAATGCAATGCGGCCACA 60.250 45.000 2.24 0.00 0.00 4.17
3224 3616 0.036199 AAAATGCAATGCGGCCACAT 60.036 45.000 2.24 0.37 0.00 3.21
3225 3617 0.036199 AAATGCAATGCGGCCACATT 60.036 45.000 13.33 13.33 40.90 2.71
3236 3628 3.984838 GCCACATTGCCAACTTGAA 57.015 47.368 0.00 0.00 0.00 2.69
3237 3629 2.237393 GCCACATTGCCAACTTGAAA 57.763 45.000 0.00 0.00 0.00 2.69
3238 3630 2.137523 GCCACATTGCCAACTTGAAAG 58.862 47.619 0.00 0.00 0.00 2.62
3239 3631 2.224018 GCCACATTGCCAACTTGAAAGA 60.224 45.455 0.00 0.00 0.00 2.52
3240 3632 3.740764 GCCACATTGCCAACTTGAAAGAA 60.741 43.478 0.00 0.00 0.00 2.52
3241 3633 4.053295 CCACATTGCCAACTTGAAAGAAG 58.947 43.478 0.00 0.00 0.00 2.85
3242 3634 4.053295 CACATTGCCAACTTGAAAGAAGG 58.947 43.478 0.00 0.00 0.00 3.46
3243 3635 3.070015 ACATTGCCAACTTGAAAGAAGGG 59.930 43.478 0.00 0.00 0.00 3.95
3244 3636 1.703411 TGCCAACTTGAAAGAAGGGG 58.297 50.000 0.00 0.00 0.00 4.79
3245 3637 1.216678 TGCCAACTTGAAAGAAGGGGA 59.783 47.619 0.00 0.00 0.00 4.81
3246 3638 2.158325 TGCCAACTTGAAAGAAGGGGAT 60.158 45.455 0.00 0.00 0.00 3.85
3247 3639 2.232208 GCCAACTTGAAAGAAGGGGATG 59.768 50.000 0.00 0.00 0.00 3.51
3248 3640 2.232208 CCAACTTGAAAGAAGGGGATGC 59.768 50.000 0.00 0.00 0.00 3.91
3249 3641 3.160269 CAACTTGAAAGAAGGGGATGCT 58.840 45.455 0.00 0.00 0.00 3.79
3250 3642 4.335416 CAACTTGAAAGAAGGGGATGCTA 58.665 43.478 0.00 0.00 0.00 3.49
3251 3643 4.657814 ACTTGAAAGAAGGGGATGCTAA 57.342 40.909 0.00 0.00 0.00 3.09
3252 3644 5.198602 ACTTGAAAGAAGGGGATGCTAAT 57.801 39.130 0.00 0.00 0.00 1.73
3253 3645 4.952335 ACTTGAAAGAAGGGGATGCTAATG 59.048 41.667 0.00 0.00 0.00 1.90
3254 3646 3.290710 TGAAAGAAGGGGATGCTAATGC 58.709 45.455 0.00 0.00 40.20 3.56
3255 3647 2.371658 AAGAAGGGGATGCTAATGCC 57.628 50.000 0.00 0.00 43.43 4.40
3256 3648 1.225373 AGAAGGGGATGCTAATGCCA 58.775 50.000 0.00 0.00 45.91 4.92
3257 3649 1.570501 AGAAGGGGATGCTAATGCCAA 59.429 47.619 0.00 0.00 45.91 4.52
3258 3650 2.178544 AGAAGGGGATGCTAATGCCAAT 59.821 45.455 0.00 0.00 45.91 3.16
3259 3651 2.781403 AGGGGATGCTAATGCCAATT 57.219 45.000 0.00 0.00 45.91 2.32
3260 3652 3.050523 AGGGGATGCTAATGCCAATTT 57.949 42.857 0.00 0.00 45.91 1.82
3261 3653 3.387012 AGGGGATGCTAATGCCAATTTT 58.613 40.909 0.00 0.00 45.91 1.82
3262 3654 3.781965 AGGGGATGCTAATGCCAATTTTT 59.218 39.130 0.00 0.00 45.91 1.94
3263 3655 4.129380 GGGGATGCTAATGCCAATTTTTC 58.871 43.478 0.00 0.00 45.91 2.29
3264 3656 4.129380 GGGATGCTAATGCCAATTTTTCC 58.871 43.478 0.00 0.00 43.62 3.13
3265 3657 4.383989 GGGATGCTAATGCCAATTTTTCCA 60.384 41.667 0.00 0.00 43.62 3.53
3266 3658 4.571984 GGATGCTAATGCCAATTTTTCCAC 59.428 41.667 0.00 0.00 38.71 4.02
3267 3659 3.936564 TGCTAATGCCAATTTTTCCACC 58.063 40.909 0.00 0.00 38.71 4.61
3268 3660 3.582208 TGCTAATGCCAATTTTTCCACCT 59.418 39.130 0.00 0.00 38.71 4.00
3269 3661 4.041444 TGCTAATGCCAATTTTTCCACCTT 59.959 37.500 0.00 0.00 38.71 3.50
3270 3662 5.003160 GCTAATGCCAATTTTTCCACCTTT 58.997 37.500 0.00 0.00 0.00 3.11
3271 3663 5.106594 GCTAATGCCAATTTTTCCACCTTTG 60.107 40.000 0.00 0.00 0.00 2.77
3272 3664 2.570135 TGCCAATTTTTCCACCTTTGC 58.430 42.857 0.00 0.00 0.00 3.68
3273 3665 2.092753 TGCCAATTTTTCCACCTTTGCA 60.093 40.909 0.00 0.00 0.00 4.08
3274 3666 3.148412 GCCAATTTTTCCACCTTTGCAT 58.852 40.909 0.00 0.00 0.00 3.96
3275 3667 4.202398 TGCCAATTTTTCCACCTTTGCATA 60.202 37.500 0.00 0.00 0.00 3.14
3276 3668 4.759183 GCCAATTTTTCCACCTTTGCATAA 59.241 37.500 0.00 0.00 0.00 1.90
3277 3669 5.415389 GCCAATTTTTCCACCTTTGCATAAT 59.585 36.000 0.00 0.00 0.00 1.28
3278 3670 6.623331 GCCAATTTTTCCACCTTTGCATAATG 60.623 38.462 0.00 0.00 0.00 1.90
3279 3671 6.316319 CAATTTTTCCACCTTTGCATAATGC 58.684 36.000 0.00 0.00 45.29 3.56
3280 3672 4.888326 TTTTCCACCTTTGCATAATGCT 57.112 36.364 0.00 0.00 45.31 3.79
3281 3673 4.454728 TTTCCACCTTTGCATAATGCTC 57.545 40.909 0.00 0.00 45.31 4.26
3282 3674 2.378038 TCCACCTTTGCATAATGCTCC 58.622 47.619 0.00 0.00 45.31 4.70
3283 3675 2.101783 CCACCTTTGCATAATGCTCCA 58.898 47.619 0.00 0.00 45.31 3.86
3284 3676 2.496871 CCACCTTTGCATAATGCTCCAA 59.503 45.455 0.00 0.00 45.31 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.956636 GCTTCCATTGATGTGCCCTCA 60.957 52.381 0.00 0.00 0.00 3.86
2 3 0.685458 GGCTTCCATTGATGTGCCCT 60.685 55.000 0.00 0.00 33.60 5.19
5 6 2.747396 TTTGGCTTCCATTGATGTGC 57.253 45.000 0.00 0.00 31.53 4.57
6 7 3.991773 CACTTTTGGCTTCCATTGATGTG 59.008 43.478 0.00 0.00 31.53 3.21
7 8 3.555586 GCACTTTTGGCTTCCATTGATGT 60.556 43.478 0.00 0.00 31.53 3.06
8 9 2.997986 GCACTTTTGGCTTCCATTGATG 59.002 45.455 0.00 0.00 31.53 3.07
9 10 2.633967 TGCACTTTTGGCTTCCATTGAT 59.366 40.909 0.00 0.00 31.53 2.57
10 11 2.037901 TGCACTTTTGGCTTCCATTGA 58.962 42.857 0.00 0.00 31.53 2.57
11 12 2.529780 TGCACTTTTGGCTTCCATTG 57.470 45.000 0.00 0.00 31.53 2.82
12 13 2.872842 GCATGCACTTTTGGCTTCCATT 60.873 45.455 14.21 0.00 31.53 3.16
13 14 1.338389 GCATGCACTTTTGGCTTCCAT 60.338 47.619 14.21 0.00 31.53 3.41
14 15 0.033781 GCATGCACTTTTGGCTTCCA 59.966 50.000 14.21 0.00 0.00 3.53
15 16 0.033781 TGCATGCACTTTTGGCTTCC 59.966 50.000 18.46 0.00 0.00 3.46
16 17 1.730064 CATGCATGCACTTTTGGCTTC 59.270 47.619 25.37 0.00 0.00 3.86
17 18 1.071071 ACATGCATGCACTTTTGGCTT 59.929 42.857 25.37 0.00 0.00 4.35
18 19 0.682852 ACATGCATGCACTTTTGGCT 59.317 45.000 25.37 0.38 0.00 4.75
19 20 2.094597 TCTACATGCATGCACTTTTGGC 60.095 45.455 25.37 0.00 0.00 4.52
20 21 3.853831 TCTACATGCATGCACTTTTGG 57.146 42.857 25.37 11.32 0.00 3.28
21 22 5.165676 ACAATCTACATGCATGCACTTTTG 58.834 37.500 25.37 19.72 0.00 2.44
22 23 5.184479 AGACAATCTACATGCATGCACTTTT 59.816 36.000 25.37 9.93 0.00 2.27
23 24 4.703575 AGACAATCTACATGCATGCACTTT 59.296 37.500 25.37 12.63 0.00 2.66
24 25 4.267536 AGACAATCTACATGCATGCACTT 58.732 39.130 25.37 15.38 0.00 3.16
25 26 3.875727 GAGACAATCTACATGCATGCACT 59.124 43.478 25.37 13.84 0.00 4.40
26 27 3.624410 TGAGACAATCTACATGCATGCAC 59.376 43.478 25.37 5.98 0.00 4.57
27 28 3.876341 TGAGACAATCTACATGCATGCA 58.124 40.909 26.53 25.04 0.00 3.96
28 29 4.888038 TTGAGACAATCTACATGCATGC 57.112 40.909 26.53 11.82 0.00 4.06
29 30 5.163824 ACGTTTGAGACAATCTACATGCATG 60.164 40.000 25.09 25.09 0.00 4.06
30 31 4.937620 ACGTTTGAGACAATCTACATGCAT 59.062 37.500 0.00 0.00 0.00 3.96
31 32 4.152223 CACGTTTGAGACAATCTACATGCA 59.848 41.667 0.00 0.00 0.00 3.96
32 33 4.436050 CCACGTTTGAGACAATCTACATGC 60.436 45.833 0.00 0.00 0.00 4.06
33 34 4.690748 ACCACGTTTGAGACAATCTACATG 59.309 41.667 0.00 0.00 0.00 3.21
34 35 4.894784 ACCACGTTTGAGACAATCTACAT 58.105 39.130 0.00 0.00 0.00 2.29
35 36 4.330944 ACCACGTTTGAGACAATCTACA 57.669 40.909 0.00 0.00 0.00 2.74
36 37 4.326548 GCTACCACGTTTGAGACAATCTAC 59.673 45.833 0.00 0.00 0.00 2.59
37 38 4.491676 GCTACCACGTTTGAGACAATCTA 58.508 43.478 0.00 0.00 0.00 1.98
38 39 3.326747 GCTACCACGTTTGAGACAATCT 58.673 45.455 0.00 0.00 0.00 2.40
39 40 2.415512 GGCTACCACGTTTGAGACAATC 59.584 50.000 0.00 0.00 0.00 2.67
40 41 2.038557 AGGCTACCACGTTTGAGACAAT 59.961 45.455 0.00 0.00 0.00 2.71
41 42 1.414919 AGGCTACCACGTTTGAGACAA 59.585 47.619 0.00 0.00 0.00 3.18
42 43 1.045407 AGGCTACCACGTTTGAGACA 58.955 50.000 0.00 0.00 0.00 3.41
43 44 1.270147 ACAGGCTACCACGTTTGAGAC 60.270 52.381 0.00 0.00 0.00 3.36
44 45 1.045407 ACAGGCTACCACGTTTGAGA 58.955 50.000 0.00 0.00 0.00 3.27
45 46 2.607187 CTACAGGCTACCACGTTTGAG 58.393 52.381 0.00 0.00 0.00 3.02
46 47 1.337447 GCTACAGGCTACCACGTTTGA 60.337 52.381 0.00 0.00 38.06 2.69
47 48 1.076332 GCTACAGGCTACCACGTTTG 58.924 55.000 0.00 0.00 38.06 2.93
48 49 0.389426 CGCTACAGGCTACCACGTTT 60.389 55.000 0.00 0.00 39.13 3.60
49 50 1.214589 CGCTACAGGCTACCACGTT 59.785 57.895 0.00 0.00 39.13 3.99
50 51 1.975407 ACGCTACAGGCTACCACGT 60.975 57.895 0.00 0.00 39.13 4.49
51 52 1.516386 CACGCTACAGGCTACCACG 60.516 63.158 0.00 0.00 39.13 4.94
52 53 0.458025 GTCACGCTACAGGCTACCAC 60.458 60.000 0.00 0.00 39.13 4.16
53 54 1.601419 GGTCACGCTACAGGCTACCA 61.601 60.000 0.00 0.00 39.13 3.25
54 55 1.141234 GGTCACGCTACAGGCTACC 59.859 63.158 0.00 0.00 39.13 3.18
55 56 1.226603 CGGTCACGCTACAGGCTAC 60.227 63.158 0.00 0.00 39.13 3.58
56 57 1.374343 CTCGGTCACGCTACAGGCTA 61.374 60.000 0.00 0.00 40.69 3.93
57 58 2.675423 TCGGTCACGCTACAGGCT 60.675 61.111 0.00 0.00 40.69 4.58
58 59 2.202623 CTCGGTCACGCTACAGGC 60.203 66.667 0.00 0.00 40.69 4.85
59 60 1.154016 CACTCGGTCACGCTACAGG 60.154 63.158 0.00 0.00 40.69 4.00
60 61 1.801913 GCACTCGGTCACGCTACAG 60.802 63.158 0.00 0.00 40.69 2.74
61 62 2.257371 GCACTCGGTCACGCTACA 59.743 61.111 0.00 0.00 40.69 2.74
80 81 3.857854 GTGACTGCCGCGCATCAG 61.858 66.667 20.23 20.23 38.13 2.90
699 700 4.011517 TTTGTCCGGCGAGTCCCC 62.012 66.667 9.30 0.00 0.00 4.81
700 701 2.741211 GTTTGTCCGGCGAGTCCC 60.741 66.667 9.30 0.00 0.00 4.46
742 743 3.461061 CAGATGGCACTGTACCACTATG 58.539 50.000 0.90 0.00 40.82 2.23
784 785 0.683828 TATTACGGTCAGGGGTGCGA 60.684 55.000 0.00 0.00 0.00 5.10
893 900 6.683861 GCATCTGCCATGATATAATCTACCGA 60.684 42.308 0.00 0.00 34.31 4.69
914 921 2.110967 AGCTCACATGGCACGCATC 61.111 57.895 0.00 0.00 0.00 3.91
967 974 0.247460 GAAATGGGCTGGTTGCTTCC 59.753 55.000 0.00 0.00 42.39 3.46
977 984 1.883084 GCGATCGTCGAAATGGGCT 60.883 57.895 17.81 0.00 43.74 5.19
978 985 2.626455 GCGATCGTCGAAATGGGC 59.374 61.111 17.81 0.00 43.74 5.36
981 988 0.767108 CTCTCGCGATCGTCGAAATG 59.233 55.000 26.15 18.36 43.74 2.32
982 989 0.377554 ACTCTCGCGATCGTCGAAAT 59.622 50.000 26.15 16.10 43.74 2.17
1048 1055 4.349342 TCTTCTTCTTCTTCTTGGAGCCTT 59.651 41.667 0.00 0.00 0.00 4.35
1114 1124 3.367743 CGACCACGTTCTCCCGGA 61.368 66.667 0.73 0.00 34.56 5.14
1179 1189 2.202518 GGCGCGCACGTACTCTTA 60.203 61.111 34.42 0.00 42.83 2.10
1244 1254 1.593750 CAGCGGCCAGATAGACAGC 60.594 63.158 2.24 0.00 0.00 4.40
1370 1386 4.373116 TTGCGCGACAGGTCCTCC 62.373 66.667 12.10 0.00 0.00 4.30
1457 1476 2.073307 CGAACTGCACATCGGTCAG 58.927 57.895 8.20 0.00 35.49 3.51
1763 1792 4.111375 ACTATGTCGCAACCAGAGTAAG 57.889 45.455 0.00 0.00 32.92 2.34
1775 1804 3.929610 AGCTTCTCTCAAAACTATGTCGC 59.070 43.478 0.00 0.00 0.00 5.19
1776 1805 7.582435 TTAAGCTTCTCTCAAAACTATGTCG 57.418 36.000 0.00 0.00 0.00 4.35
1778 1807 7.819900 ACGATTAAGCTTCTCTCAAAACTATGT 59.180 33.333 0.00 0.00 0.00 2.29
1779 1808 8.113062 CACGATTAAGCTTCTCTCAAAACTATG 58.887 37.037 0.00 0.00 0.00 2.23
1782 1811 5.409826 CCACGATTAAGCTTCTCTCAAAACT 59.590 40.000 0.00 0.00 0.00 2.66
1789 1826 5.105146 AGTTCATCCACGATTAAGCTTCTCT 60.105 40.000 0.00 0.00 0.00 3.10
1792 1829 4.870426 TCAGTTCATCCACGATTAAGCTTC 59.130 41.667 0.00 0.00 0.00 3.86
1796 1833 4.032900 CCGTTCAGTTCATCCACGATTAAG 59.967 45.833 0.00 0.00 32.51 1.85
1839 1876 4.463879 CTCAGCCGGTGCAGAGGG 62.464 72.222 1.90 1.67 44.78 4.30
1863 1900 4.467084 TTGCTGGCCGACGGGATC 62.467 66.667 17.22 0.00 34.06 3.36
1882 1919 2.510238 CTTCTCCGCCGGCTTGAG 60.510 66.667 27.81 27.81 0.00 3.02
1989 2026 0.962356 AATTGTGGAAGCCGCTGAGG 60.962 55.000 0.00 0.00 44.97 3.86
2007 2044 1.659233 CGGTGGTCATGCTTGCAAA 59.341 52.632 0.00 0.00 0.00 3.68
2008 2045 2.918345 GCGGTGGTCATGCTTGCAA 61.918 57.895 0.00 0.00 0.00 4.08
2016 2053 4.760047 GCTGGTCGCGGTGGTCAT 62.760 66.667 6.13 0.00 0.00 3.06
2082 2126 1.891919 GCAGAAACACTCCCACGCA 60.892 57.895 0.00 0.00 0.00 5.24
2128 2172 3.640407 GGCTCCTCTGCACCACCA 61.640 66.667 0.00 0.00 34.04 4.17
2133 2177 0.461961 ATTACTCGGCTCCTCTGCAC 59.538 55.000 0.00 0.00 34.04 4.57
2171 2215 2.159184 TCACGATCCTGTGAATGCTCTC 60.159 50.000 1.41 0.00 45.40 3.20
2184 2228 9.901724 CGCTAAATAATAATATTGTCACGATCC 57.098 33.333 0.00 0.00 32.06 3.36
2203 2247 0.107848 CACGACCTTCCCCGCTAAAT 60.108 55.000 0.00 0.00 0.00 1.40
2204 2248 1.186917 TCACGACCTTCCCCGCTAAA 61.187 55.000 0.00 0.00 0.00 1.85
2206 2250 2.036098 TCACGACCTTCCCCGCTA 59.964 61.111 0.00 0.00 0.00 4.26
2207 2251 3.692406 GTCACGACCTTCCCCGCT 61.692 66.667 0.00 0.00 0.00 5.52
2208 2252 2.798148 ATTGTCACGACCTTCCCCGC 62.798 60.000 0.00 0.00 0.00 6.13
2209 2253 0.533491 TATTGTCACGACCTTCCCCG 59.467 55.000 0.00 0.00 0.00 5.73
2210 2254 2.943033 CAATATTGTCACGACCTTCCCC 59.057 50.000 7.32 0.00 0.00 4.81
2211 2255 3.869065 TCAATATTGTCACGACCTTCCC 58.131 45.455 14.97 0.00 0.00 3.97
2213 2257 4.550831 CGCATCAATATTGTCACGACCTTC 60.551 45.833 14.97 0.00 0.00 3.46
2214 2258 3.309682 CGCATCAATATTGTCACGACCTT 59.690 43.478 14.97 0.00 0.00 3.50
2215 2259 2.866156 CGCATCAATATTGTCACGACCT 59.134 45.455 14.97 0.00 0.00 3.85
2217 2261 3.602491 GCTCGCATCAATATTGTCACGAC 60.602 47.826 14.97 11.87 0.00 4.34
2258 2547 5.822519 TCTGCAAAGGACATTATGTGGATAC 59.177 40.000 1.24 0.00 0.00 2.24
2328 2617 0.670854 GGACACAGCGAGGGAAGTTC 60.671 60.000 0.00 0.00 0.00 3.01
2330 2619 1.837051 TGGACACAGCGAGGGAAGT 60.837 57.895 0.00 0.00 0.00 3.01
2331 2620 1.374758 GTGGACACAGCGAGGGAAG 60.375 63.158 0.00 0.00 0.00 3.46
2332 2621 1.691195 TTGTGGACACAGCGAGGGAA 61.691 55.000 5.21 0.00 42.94 3.97
2333 2622 1.480212 ATTGTGGACACAGCGAGGGA 61.480 55.000 5.21 0.00 42.94 4.20
2334 2623 1.003355 ATTGTGGACACAGCGAGGG 60.003 57.895 5.21 0.00 42.94 4.30
2335 2624 1.300971 CCATTGTGGACACAGCGAGG 61.301 60.000 5.21 3.31 40.96 4.63
2336 2625 1.915614 GCCATTGTGGACACAGCGAG 61.916 60.000 5.21 0.00 40.96 5.03
2338 2627 1.794151 TTGCCATTGTGGACACAGCG 61.794 55.000 5.21 1.32 40.96 5.18
2339 2628 0.604578 ATTGCCATTGTGGACACAGC 59.395 50.000 5.21 6.71 40.96 4.40
2347 2661 4.621832 GCCCCAATTGCCATTGTG 57.378 55.556 9.45 0.00 38.58 3.33
2364 2678 2.362120 CTGCTGCTTTGGGAGGGG 60.362 66.667 0.00 0.00 0.00 4.79
2367 2681 1.664321 GCATCCTGCTGCTTTGGGAG 61.664 60.000 0.00 0.00 40.96 4.30
2409 2797 3.645975 CGGAGGTTTGCGCAACGT 61.646 61.111 24.99 18.60 36.05 3.99
2426 2814 4.631813 ACAAAACTCAGAGATTATGACCGC 59.368 41.667 3.79 0.00 0.00 5.68
2428 2816 7.913674 AAGACAAAACTCAGAGATTATGACC 57.086 36.000 3.79 0.09 0.00 4.02
2471 2859 4.451629 TGAAGTTTATGTCGGTCTCCTC 57.548 45.455 0.00 0.00 0.00 3.71
2472 2860 4.283722 ACTTGAAGTTTATGTCGGTCTCCT 59.716 41.667 0.00 0.00 0.00 3.69
2474 2862 5.694910 TGAACTTGAAGTTTATGTCGGTCTC 59.305 40.000 12.37 0.00 38.80 3.36
2484 2872 4.696402 ACGTTGTGGTGAACTTGAAGTTTA 59.304 37.500 12.37 5.13 38.80 2.01
2487 2875 2.706890 ACGTTGTGGTGAACTTGAAGT 58.293 42.857 0.00 0.00 0.00 3.01
2502 2890 5.726138 GCAGAAGAGATTTGCTCATACGTTG 60.726 44.000 0.00 0.00 46.45 4.10
2503 2891 4.331168 GCAGAAGAGATTTGCTCATACGTT 59.669 41.667 0.00 0.00 46.45 3.99
2517 2905 8.682936 AAAGTTATCTTTTCTTGCAGAAGAGA 57.317 30.769 16.05 16.05 45.61 3.10
2531 2919 5.710099 TGAGATCGGCCAAAAAGTTATCTTT 59.290 36.000 2.24 0.00 44.59 2.52
2549 2937 3.139794 GCTTTTGCGCGATGAGATC 57.860 52.632 12.10 0.00 34.86 2.75
2579 2967 8.710749 AAATTACACATAGCAACCCATATCAT 57.289 30.769 0.00 0.00 0.00 2.45
2584 2972 6.849085 TTGAAATTACACATAGCAACCCAT 57.151 33.333 0.00 0.00 0.00 4.00
2600 2988 7.552330 GTGGGCATGGTATATTTGTTTGAAATT 59.448 33.333 0.00 0.00 0.00 1.82
2605 2993 5.596836 AGTGGGCATGGTATATTTGTTTG 57.403 39.130 0.00 0.00 0.00 2.93
2607 2995 5.761205 TGTAGTGGGCATGGTATATTTGTT 58.239 37.500 0.00 0.00 0.00 2.83
2619 3007 1.273327 GCTTGCTTTTGTAGTGGGCAT 59.727 47.619 0.00 0.00 32.87 4.40
2621 3009 0.387239 CGCTTGCTTTTGTAGTGGGC 60.387 55.000 0.00 0.00 0.00 5.36
2622 3010 1.234821 TCGCTTGCTTTTGTAGTGGG 58.765 50.000 0.00 0.00 0.00 4.61
2623 3011 3.042887 GTTTCGCTTGCTTTTGTAGTGG 58.957 45.455 0.00 0.00 0.00 4.00
2624 3012 3.690422 TGTTTCGCTTGCTTTTGTAGTG 58.310 40.909 0.00 0.00 0.00 2.74
2625 3013 4.290155 CATGTTTCGCTTGCTTTTGTAGT 58.710 39.130 0.00 0.00 0.00 2.73
2626 3014 3.670055 CCATGTTTCGCTTGCTTTTGTAG 59.330 43.478 0.00 0.00 0.00 2.74
2627 3015 3.316588 TCCATGTTTCGCTTGCTTTTGTA 59.683 39.130 0.00 0.00 0.00 2.41
2658 3046 3.004419 GGCTGCCCGAAAATAGTTTATCC 59.996 47.826 7.66 0.00 0.00 2.59
2659 3047 3.004419 GGGCTGCCCGAAAATAGTTTATC 59.996 47.826 24.16 0.00 32.13 1.75
2682 3070 5.445069 TCTCCTTCAATTCACAAGTTTGGA 58.555 37.500 0.00 0.00 0.00 3.53
2716 3104 0.532862 AGCAAGTGAAGTGACGGGTG 60.533 55.000 0.00 0.00 0.00 4.61
2743 3131 3.494254 AGGGTGGGGTTTGCACGA 61.494 61.111 0.00 0.00 0.00 4.35
2749 3137 1.541672 CTTGGACAGGGTGGGGTTT 59.458 57.895 0.00 0.00 0.00 3.27
2759 3147 2.486472 ATGGAGTCAAGCTTGGACAG 57.514 50.000 25.73 0.00 37.74 3.51
2764 3152 3.005050 TGCAGAAAATGGAGTCAAGCTTG 59.995 43.478 20.81 20.81 0.00 4.01
2781 3169 1.962100 TGTCACATTTGGCATTGCAGA 59.038 42.857 11.39 0.00 30.23 4.26
2788 3176 4.040095 TGGAAATGAATGTCACATTTGGCA 59.960 37.500 4.04 0.00 44.46 4.92
2792 3180 5.047092 GGGAGTGGAAATGAATGTCACATTT 60.047 40.000 4.04 0.00 46.22 2.32
2809 3197 2.171237 TGAATAGAGCACATGGGAGTGG 59.829 50.000 0.00 0.00 39.87 4.00
2828 3216 3.510459 TGATCAGAGAGGGAACAAGTGA 58.490 45.455 0.00 0.00 0.00 3.41
2832 3220 4.323792 GGACAATGATCAGAGAGGGAACAA 60.324 45.833 0.09 0.00 0.00 2.83
2833 3221 3.198635 GGACAATGATCAGAGAGGGAACA 59.801 47.826 0.09 0.00 0.00 3.18
2834 3222 3.198635 TGGACAATGATCAGAGAGGGAAC 59.801 47.826 0.09 0.00 0.00 3.62
2839 3231 4.732672 TCAGTGGACAATGATCAGAGAG 57.267 45.455 0.09 0.00 29.72 3.20
2844 3236 3.353370 TGCATCAGTGGACAATGATCA 57.647 42.857 11.81 10.29 43.31 2.92
2850 3242 1.307355 CGGCATGCATCAGTGGACAA 61.307 55.000 21.36 0.00 0.00 3.18
2864 3256 0.751643 GGGCAAACTACCATCGGCAT 60.752 55.000 0.00 0.00 0.00 4.40
2930 3322 1.542915 CACCACAGAATTGAAGCCCAG 59.457 52.381 0.00 0.00 0.00 4.45
2936 3328 3.243501 GCTTTGAGCACCACAGAATTGAA 60.244 43.478 0.00 0.00 41.89 2.69
2940 3332 2.283145 AGCTTTGAGCACCACAGAAT 57.717 45.000 2.47 0.00 45.56 2.40
2941 3333 1.677576 CAAGCTTTGAGCACCACAGAA 59.322 47.619 0.00 0.00 45.56 3.02
2942 3334 1.311859 CAAGCTTTGAGCACCACAGA 58.688 50.000 0.00 0.00 45.56 3.41
2943 3335 0.313043 CCAAGCTTTGAGCACCACAG 59.687 55.000 0.00 0.00 45.56 3.66
2945 3337 1.032014 TTCCAAGCTTTGAGCACCAC 58.968 50.000 0.00 0.00 45.56 4.16
2953 3345 2.034939 TGTGTGCTCATTCCAAGCTTTG 59.965 45.455 0.00 0.00 40.50 2.77
2972 3364 1.959226 CGGGCTTAGTGTGCGTTGT 60.959 57.895 0.00 0.00 0.00 3.32
2978 3370 0.034896 ACTTGGTCGGGCTTAGTGTG 59.965 55.000 0.00 0.00 0.00 3.82
2984 3376 0.182775 AACAAGACTTGGTCGGGCTT 59.817 50.000 19.16 0.00 37.67 4.35
3021 3413 4.895889 TCCATTCTGAGATCTTCATACCGT 59.104 41.667 0.00 0.00 34.68 4.83
3025 3417 9.473007 CCTATACTCCATTCTGAGATCTTCATA 57.527 37.037 0.00 0.00 34.68 2.15
3026 3418 7.955185 ACCTATACTCCATTCTGAGATCTTCAT 59.045 37.037 0.00 0.00 34.68 2.57
3030 3422 7.102518 AGACCTATACTCCATTCTGAGATCT 57.897 40.000 0.00 0.00 36.22 2.75
3032 3424 9.836179 AAATAGACCTATACTCCATTCTGAGAT 57.164 33.333 0.00 0.00 36.22 2.75
3037 3429 6.558775 TGGCAAATAGACCTATACTCCATTCT 59.441 38.462 0.00 0.00 0.00 2.40
3048 3440 4.968719 TCTTGGATCTGGCAAATAGACCTA 59.031 41.667 0.00 0.00 0.00 3.08
3053 3445 4.518211 GTGGATCTTGGATCTGGCAAATAG 59.482 45.833 7.35 0.00 0.00 1.73
3054 3446 4.464008 GTGGATCTTGGATCTGGCAAATA 58.536 43.478 7.35 0.00 0.00 1.40
3055 3447 3.294214 GTGGATCTTGGATCTGGCAAAT 58.706 45.455 7.35 0.00 0.00 2.32
3056 3448 2.621407 GGTGGATCTTGGATCTGGCAAA 60.621 50.000 7.35 0.00 0.00 3.68
3057 3449 1.064463 GGTGGATCTTGGATCTGGCAA 60.064 52.381 7.35 0.00 0.00 4.52
3058 3450 0.548031 GGTGGATCTTGGATCTGGCA 59.452 55.000 7.35 0.00 0.00 4.92
3059 3451 0.842635 AGGTGGATCTTGGATCTGGC 59.157 55.000 7.35 0.00 0.00 4.85
3060 3452 2.507058 TGAAGGTGGATCTTGGATCTGG 59.493 50.000 7.35 0.00 0.00 3.86
3061 3453 3.920231 TGAAGGTGGATCTTGGATCTG 57.080 47.619 7.35 0.00 0.00 2.90
3062 3454 3.434739 GCATGAAGGTGGATCTTGGATCT 60.435 47.826 0.00 0.00 0.00 2.75
3063 3455 2.883386 GCATGAAGGTGGATCTTGGATC 59.117 50.000 0.00 0.00 0.00 3.36
3064 3456 2.423947 GGCATGAAGGTGGATCTTGGAT 60.424 50.000 0.00 0.00 0.00 3.41
3065 3457 1.064463 GGCATGAAGGTGGATCTTGGA 60.064 52.381 0.00 0.00 0.00 3.53
3066 3458 1.341285 TGGCATGAAGGTGGATCTTGG 60.341 52.381 0.00 0.00 0.00 3.61
3067 3459 1.747355 GTGGCATGAAGGTGGATCTTG 59.253 52.381 0.00 0.00 0.00 3.02
3068 3460 1.355381 TGTGGCATGAAGGTGGATCTT 59.645 47.619 0.00 0.00 0.00 2.40
3069 3461 0.994247 TGTGGCATGAAGGTGGATCT 59.006 50.000 0.00 0.00 0.00 2.75
3070 3462 1.098050 GTGTGGCATGAAGGTGGATC 58.902 55.000 0.00 0.00 0.00 3.36
3071 3463 0.700564 AGTGTGGCATGAAGGTGGAT 59.299 50.000 0.00 0.00 0.00 3.41
3072 3464 1.003118 GTAGTGTGGCATGAAGGTGGA 59.997 52.381 0.00 0.00 0.00 4.02
3073 3465 1.003580 AGTAGTGTGGCATGAAGGTGG 59.996 52.381 0.00 0.00 0.00 4.61
3074 3466 2.479566 AGTAGTGTGGCATGAAGGTG 57.520 50.000 0.00 0.00 0.00 4.00
3075 3467 2.106511 ACAAGTAGTGTGGCATGAAGGT 59.893 45.455 0.00 0.00 39.72 3.50
3076 3468 2.744202 GACAAGTAGTGTGGCATGAAGG 59.256 50.000 0.00 0.00 41.96 3.46
3077 3469 3.402110 TGACAAGTAGTGTGGCATGAAG 58.598 45.455 0.00 0.00 41.96 3.02
3078 3470 3.483808 TGACAAGTAGTGTGGCATGAA 57.516 42.857 0.00 0.00 41.96 2.57
3079 3471 3.599343 GATGACAAGTAGTGTGGCATGA 58.401 45.455 0.00 0.00 44.96 3.07
3080 3472 2.679837 GGATGACAAGTAGTGTGGCATG 59.320 50.000 0.00 0.00 44.96 4.06
3082 3474 1.977854 AGGATGACAAGTAGTGTGGCA 59.022 47.619 0.00 0.00 41.96 4.92
3083 3475 2.770164 AGGATGACAAGTAGTGTGGC 57.230 50.000 0.00 0.00 41.96 5.01
3084 3476 3.254060 CGAAGGATGACAAGTAGTGTGG 58.746 50.000 0.00 0.00 41.96 4.17
3085 3477 2.668457 GCGAAGGATGACAAGTAGTGTG 59.332 50.000 0.00 0.00 41.96 3.82
3086 3478 2.353803 GGCGAAGGATGACAAGTAGTGT 60.354 50.000 0.00 0.00 45.74 3.55
3087 3479 2.093973 AGGCGAAGGATGACAAGTAGTG 60.094 50.000 0.00 0.00 0.00 2.74
3088 3480 2.180276 AGGCGAAGGATGACAAGTAGT 58.820 47.619 0.00 0.00 0.00 2.73
3089 3481 2.932614 CAAGGCGAAGGATGACAAGTAG 59.067 50.000 0.00 0.00 0.00 2.57
3090 3482 2.565391 TCAAGGCGAAGGATGACAAGTA 59.435 45.455 0.00 0.00 0.00 2.24
3091 3483 1.347707 TCAAGGCGAAGGATGACAAGT 59.652 47.619 0.00 0.00 0.00 3.16
3092 3484 1.734465 GTCAAGGCGAAGGATGACAAG 59.266 52.381 0.00 0.00 41.35 3.16
3093 3485 1.610624 GGTCAAGGCGAAGGATGACAA 60.611 52.381 7.03 0.00 43.02 3.18
3094 3486 0.036388 GGTCAAGGCGAAGGATGACA 60.036 55.000 7.03 0.00 43.02 3.58
3095 3487 0.744771 GGGTCAAGGCGAAGGATGAC 60.745 60.000 0.00 0.00 41.06 3.06
3096 3488 1.198094 TGGGTCAAGGCGAAGGATGA 61.198 55.000 0.00 0.00 0.00 2.92
3097 3489 0.322456 TTGGGTCAAGGCGAAGGATG 60.322 55.000 0.00 0.00 0.00 3.51
3098 3490 0.035056 CTTGGGTCAAGGCGAAGGAT 60.035 55.000 0.05 0.00 37.77 3.24
3099 3491 1.125093 TCTTGGGTCAAGGCGAAGGA 61.125 55.000 7.67 0.00 41.33 3.36
3100 3492 0.674895 CTCTTGGGTCAAGGCGAAGG 60.675 60.000 7.67 0.00 41.33 3.46
3101 3493 0.321671 TCTCTTGGGTCAAGGCGAAG 59.678 55.000 7.67 0.00 41.33 3.79
3102 3494 0.762418 TTCTCTTGGGTCAAGGCGAA 59.238 50.000 7.67 8.00 41.33 4.70
3103 3495 0.984230 ATTCTCTTGGGTCAAGGCGA 59.016 50.000 7.67 3.10 41.33 5.54
3104 3496 1.373570 GATTCTCTTGGGTCAAGGCG 58.626 55.000 7.67 1.07 41.33 5.52
3105 3497 1.066143 TCGATTCTCTTGGGTCAAGGC 60.066 52.381 7.67 0.00 41.33 4.35
3106 3498 2.028112 TGTCGATTCTCTTGGGTCAAGG 60.028 50.000 7.67 0.27 41.33 3.61
3107 3499 3.319137 TGTCGATTCTCTTGGGTCAAG 57.681 47.619 1.53 1.53 42.25 3.02
3108 3500 3.515502 AGATGTCGATTCTCTTGGGTCAA 59.484 43.478 0.00 0.00 0.00 3.18
3109 3501 3.099905 AGATGTCGATTCTCTTGGGTCA 58.900 45.455 0.00 0.00 0.00 4.02
3110 3502 3.810310 AGATGTCGATTCTCTTGGGTC 57.190 47.619 0.00 0.00 0.00 4.46
3111 3503 4.020218 TGAAAGATGTCGATTCTCTTGGGT 60.020 41.667 7.56 0.00 29.96 4.51
3112 3504 4.507710 TGAAAGATGTCGATTCTCTTGGG 58.492 43.478 7.56 0.00 29.96 4.12
3113 3505 6.486253 TTTGAAAGATGTCGATTCTCTTGG 57.514 37.500 7.56 0.00 29.96 3.61
3114 3506 7.691463 GTCATTTGAAAGATGTCGATTCTCTTG 59.309 37.037 7.56 0.00 29.96 3.02
3115 3507 7.412346 CGTCATTTGAAAGATGTCGATTCTCTT 60.412 37.037 1.80 2.10 37.95 2.85
3116 3508 6.035435 CGTCATTTGAAAGATGTCGATTCTCT 59.965 38.462 1.80 0.00 37.95 3.10
3117 3509 6.035005 TCGTCATTTGAAAGATGTCGATTCTC 59.965 38.462 1.80 0.00 39.09 2.87
3118 3510 5.869344 TCGTCATTTGAAAGATGTCGATTCT 59.131 36.000 0.00 0.00 39.09 2.40
3119 3511 6.094739 TCGTCATTTGAAAGATGTCGATTC 57.905 37.500 0.00 0.00 39.09 2.52
3120 3512 5.446473 GCTCGTCATTTGAAAGATGTCGATT 60.446 40.000 6.83 0.00 41.55 3.34
3121 3513 4.033358 GCTCGTCATTTGAAAGATGTCGAT 59.967 41.667 6.83 0.00 41.55 3.59
3122 3514 3.367932 GCTCGTCATTTGAAAGATGTCGA 59.632 43.478 6.35 6.35 40.71 4.20
3123 3515 3.369147 AGCTCGTCATTTGAAAGATGTCG 59.631 43.478 0.00 0.00 37.38 4.35
3124 3516 4.935885 AGCTCGTCATTTGAAAGATGTC 57.064 40.909 0.00 0.00 0.00 3.06
3125 3517 4.756642 TCAAGCTCGTCATTTGAAAGATGT 59.243 37.500 0.00 0.00 0.00 3.06
3126 3518 5.287170 TCAAGCTCGTCATTTGAAAGATG 57.713 39.130 0.00 0.00 0.00 2.90
3127 3519 4.142730 GCTCAAGCTCGTCATTTGAAAGAT 60.143 41.667 0.00 0.00 38.21 2.40
3128 3520 3.187227 GCTCAAGCTCGTCATTTGAAAGA 59.813 43.478 0.00 0.00 38.21 2.52
3129 3521 3.486584 GCTCAAGCTCGTCATTTGAAAG 58.513 45.455 0.00 0.00 38.21 2.62
3130 3522 3.542712 GCTCAAGCTCGTCATTTGAAA 57.457 42.857 0.00 0.00 38.21 2.69
3143 3535 6.727824 TTTTTAGATGTGTAGAGCTCAAGC 57.272 37.500 17.77 5.87 42.49 4.01
3174 3566 6.331061 ACATCTAGATAACGGTCAAACTGAC 58.669 40.000 4.54 0.00 46.23 3.51
3175 3567 6.152154 TGACATCTAGATAACGGTCAAACTGA 59.848 38.462 17.01 0.00 32.85 3.41
3176 3568 6.253727 GTGACATCTAGATAACGGTCAAACTG 59.746 42.308 19.63 3.14 37.06 3.16
3177 3569 6.071560 TGTGACATCTAGATAACGGTCAAACT 60.072 38.462 19.63 0.00 37.06 2.66
3178 3570 6.097356 TGTGACATCTAGATAACGGTCAAAC 58.903 40.000 19.63 12.10 37.06 2.93
3179 3571 6.275494 TGTGACATCTAGATAACGGTCAAA 57.725 37.500 19.63 14.41 37.06 2.69
3180 3572 5.907866 TGTGACATCTAGATAACGGTCAA 57.092 39.130 19.63 10.99 37.06 3.18
3181 3573 7.576861 TTATGTGACATCTAGATAACGGTCA 57.423 36.000 15.90 15.90 33.31 4.02
3182 3574 8.867112 TTTTATGTGACATCTAGATAACGGTC 57.133 34.615 4.54 9.21 0.00 4.79
3183 3575 9.832445 ATTTTTATGTGACATCTAGATAACGGT 57.168 29.630 4.54 0.00 0.00 4.83
3185 3577 9.586150 GCATTTTTATGTGACATCTAGATAACG 57.414 33.333 4.54 0.00 0.00 3.18
3189 3581 9.961265 CATTGCATTTTTATGTGACATCTAGAT 57.039 29.630 0.00 0.00 0.00 1.98
3190 3582 7.916977 GCATTGCATTTTTATGTGACATCTAGA 59.083 33.333 0.00 0.00 0.00 2.43
3191 3583 7.096763 CGCATTGCATTTTTATGTGACATCTAG 60.097 37.037 0.00 0.00 32.88 2.43
3192 3584 6.692249 CGCATTGCATTTTTATGTGACATCTA 59.308 34.615 0.00 0.00 32.88 1.98
3193 3585 5.517411 CGCATTGCATTTTTATGTGACATCT 59.483 36.000 0.00 0.00 32.88 2.90
3194 3586 5.276489 CCGCATTGCATTTTTATGTGACATC 60.276 40.000 0.00 0.00 32.88 3.06
3195 3587 4.567558 CCGCATTGCATTTTTATGTGACAT 59.432 37.500 9.69 2.65 32.88 3.06
3196 3588 3.925299 CCGCATTGCATTTTTATGTGACA 59.075 39.130 9.69 0.00 32.88 3.58
3197 3589 3.242059 GCCGCATTGCATTTTTATGTGAC 60.242 43.478 9.69 0.00 32.88 3.67
3198 3590 2.928757 GCCGCATTGCATTTTTATGTGA 59.071 40.909 9.69 0.00 32.88 3.58
3199 3591 2.030701 GGCCGCATTGCATTTTTATGTG 59.969 45.455 9.69 2.52 0.00 3.21
3200 3592 2.278854 GGCCGCATTGCATTTTTATGT 58.721 42.857 9.69 0.00 0.00 2.29
3201 3593 2.030701 GTGGCCGCATTGCATTTTTATG 59.969 45.455 12.58 0.00 0.00 1.90
3202 3594 2.278854 GTGGCCGCATTGCATTTTTAT 58.721 42.857 12.58 0.00 0.00 1.40
3203 3595 1.001293 TGTGGCCGCATTGCATTTTTA 59.999 42.857 16.89 0.00 0.00 1.52
3204 3596 0.250209 TGTGGCCGCATTGCATTTTT 60.250 45.000 16.89 0.00 0.00 1.94
3205 3597 0.036199 ATGTGGCCGCATTGCATTTT 60.036 45.000 26.27 1.96 0.00 1.82
3206 3598 0.036199 AATGTGGCCGCATTGCATTT 60.036 45.000 37.31 18.12 37.65 2.32
3207 3599 0.741574 CAATGTGGCCGCATTGCATT 60.742 50.000 43.15 24.05 45.84 3.56
3208 3600 1.153529 CAATGTGGCCGCATTGCAT 60.154 52.632 43.15 23.82 45.84 3.96
3209 3601 2.261981 CAATGTGGCCGCATTGCA 59.738 55.556 43.15 16.67 45.84 4.08
3218 3610 2.137523 CTTTCAAGTTGGCAATGTGGC 58.862 47.619 1.92 0.00 44.03 5.01
3219 3611 3.731652 TCTTTCAAGTTGGCAATGTGG 57.268 42.857 1.92 0.00 0.00 4.17
3220 3612 4.053295 CCTTCTTTCAAGTTGGCAATGTG 58.947 43.478 1.92 4.94 0.00 3.21
3221 3613 3.070015 CCCTTCTTTCAAGTTGGCAATGT 59.930 43.478 1.92 0.00 0.00 2.71
3222 3614 3.555586 CCCCTTCTTTCAAGTTGGCAATG 60.556 47.826 1.92 0.00 0.00 2.82
3223 3615 2.634453 CCCCTTCTTTCAAGTTGGCAAT 59.366 45.455 1.92 0.00 0.00 3.56
3224 3616 2.038659 CCCCTTCTTTCAAGTTGGCAA 58.961 47.619 2.34 0.00 0.00 4.52
3225 3617 1.216678 TCCCCTTCTTTCAAGTTGGCA 59.783 47.619 2.34 0.00 0.00 4.92
3226 3618 1.995376 TCCCCTTCTTTCAAGTTGGC 58.005 50.000 2.34 0.00 0.00 4.52
3227 3619 2.232208 GCATCCCCTTCTTTCAAGTTGG 59.768 50.000 2.34 0.00 0.00 3.77
3228 3620 3.160269 AGCATCCCCTTCTTTCAAGTTG 58.840 45.455 0.00 0.00 0.00 3.16
3229 3621 3.532641 AGCATCCCCTTCTTTCAAGTT 57.467 42.857 0.00 0.00 0.00 2.66
3230 3622 4.657814 TTAGCATCCCCTTCTTTCAAGT 57.342 40.909 0.00 0.00 0.00 3.16
3231 3623 4.202090 GCATTAGCATCCCCTTCTTTCAAG 60.202 45.833 0.00 0.00 41.58 3.02
3232 3624 3.701040 GCATTAGCATCCCCTTCTTTCAA 59.299 43.478 0.00 0.00 41.58 2.69
3233 3625 3.290710 GCATTAGCATCCCCTTCTTTCA 58.709 45.455 0.00 0.00 41.58 2.69
3234 3626 2.625314 GGCATTAGCATCCCCTTCTTTC 59.375 50.000 0.00 0.00 44.61 2.62
3235 3627 2.024080 TGGCATTAGCATCCCCTTCTTT 60.024 45.455 0.00 0.00 44.61 2.52
3236 3628 1.570501 TGGCATTAGCATCCCCTTCTT 59.429 47.619 0.00 0.00 44.61 2.52
3237 3629 1.225373 TGGCATTAGCATCCCCTTCT 58.775 50.000 0.00 0.00 44.61 2.85
3238 3630 2.071778 TTGGCATTAGCATCCCCTTC 57.928 50.000 0.00 0.00 44.61 3.46
3239 3631 2.781403 ATTGGCATTAGCATCCCCTT 57.219 45.000 0.00 0.00 44.61 3.95
3240 3632 2.781403 AATTGGCATTAGCATCCCCT 57.219 45.000 0.00 0.00 44.61 4.79
3241 3633 3.843893 AAAATTGGCATTAGCATCCCC 57.156 42.857 0.00 0.00 44.61 4.81
3242 3634 4.129380 GGAAAAATTGGCATTAGCATCCC 58.871 43.478 0.00 0.00 44.61 3.85
3243 3635 4.571984 GTGGAAAAATTGGCATTAGCATCC 59.428 41.667 0.00 0.00 44.61 3.51
3244 3636 4.571984 GGTGGAAAAATTGGCATTAGCATC 59.428 41.667 0.00 0.00 44.61 3.91
3245 3637 4.225717 AGGTGGAAAAATTGGCATTAGCAT 59.774 37.500 0.00 0.00 44.61 3.79
3246 3638 3.582208 AGGTGGAAAAATTGGCATTAGCA 59.418 39.130 0.00 0.00 44.61 3.49
3247 3639 4.206477 AGGTGGAAAAATTGGCATTAGC 57.794 40.909 0.00 0.00 41.10 3.09
3248 3640 5.106594 GCAAAGGTGGAAAAATTGGCATTAG 60.107 40.000 0.00 0.00 0.00 1.73
3249 3641 4.759183 GCAAAGGTGGAAAAATTGGCATTA 59.241 37.500 0.00 0.00 0.00 1.90
3250 3642 3.569277 GCAAAGGTGGAAAAATTGGCATT 59.431 39.130 0.00 0.00 0.00 3.56
3251 3643 3.148412 GCAAAGGTGGAAAAATTGGCAT 58.852 40.909 0.00 0.00 0.00 4.40
3252 3644 2.092753 TGCAAAGGTGGAAAAATTGGCA 60.093 40.909 0.00 0.00 0.00 4.92
3253 3645 2.570135 TGCAAAGGTGGAAAAATTGGC 58.430 42.857 0.00 0.00 0.00 4.52
3254 3646 6.623331 GCATTATGCAAAGGTGGAAAAATTGG 60.623 38.462 12.80 0.00 44.26 3.16
3255 3647 6.316319 GCATTATGCAAAGGTGGAAAAATTG 58.684 36.000 12.80 0.00 44.26 2.32
3256 3648 6.499234 GCATTATGCAAAGGTGGAAAAATT 57.501 33.333 12.80 0.00 44.26 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.