Multiple sequence alignment - TraesCS5B01G243500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G243500 chr5B 100.000 2480 0 0 1 2480 423795185 423797664 0.000000e+00 4580.0
1 TraesCS5B01G243500 chr5B 92.655 177 5 1 429 597 400924751 400924575 5.300000e-62 248.0
2 TraesCS5B01G243500 chr5B 88.024 167 16 3 105 270 111200177 111200340 7.000000e-46 195.0
3 TraesCS5B01G243500 chr5D 89.317 1479 103 33 612 2059 358797998 358799452 0.000000e+00 1805.0
4 TraesCS5B01G243500 chr5D 93.714 175 10 1 2157 2330 358799601 358799775 6.800000e-66 261.0
5 TraesCS5B01G243500 chr5D 91.860 172 13 1 103 273 359528389 359528218 3.190000e-59 239.0
6 TraesCS5B01G243500 chr5D 89.375 160 17 0 268 427 358797796 358797955 4.180000e-48 202.0
7 TraesCS5B01G243500 chr5A 88.938 1347 116 23 701 2021 459542379 459543718 0.000000e+00 1631.0
8 TraesCS5B01G243500 chr5A 96.622 148 5 0 2333 2480 312019435 312019582 1.900000e-61 246.0
9 TraesCS5B01G243500 chr5A 90.533 169 15 1 103 270 98037297 98037129 3.210000e-54 222.0
10 TraesCS5B01G243500 chr5A 94.915 118 4 2 2222 2338 459543889 459544005 1.510000e-42 183.0
11 TraesCS5B01G243500 chr4A 84.625 774 85 26 716 1463 112858362 112857597 0.000000e+00 739.0
12 TraesCS5B01G243500 chr4A 95.853 434 18 0 1025 1458 112847011 112846578 0.000000e+00 702.0
13 TraesCS5B01G243500 chr4A 95.216 439 21 0 1025 1463 112853360 112852922 0.000000e+00 695.0
14 TraesCS5B01G243500 chr4A 96.471 170 5 1 429 597 620259508 620259677 1.880000e-71 279.0
15 TraesCS5B01G243500 chr4A 95.294 170 7 1 429 597 735162185 735162354 4.070000e-68 268.0
16 TraesCS5B01G243500 chr4A 95.973 149 6 0 2332 2480 137665665 137665813 2.460000e-60 243.0
17 TraesCS5B01G243500 chr4A 94.268 157 9 0 2324 2480 595849681 595849525 8.860000e-60 241.0
18 TraesCS5B01G243500 chr4A 92.169 166 10 2 429 593 39081781 39081944 5.330000e-57 231.0
19 TraesCS5B01G243500 chr4B 84.516 775 88 25 713 1463 436098172 436098938 0.000000e+00 737.0
20 TraesCS5B01G243500 chr4B 94.796 442 23 0 1022 1463 436102581 436103022 0.000000e+00 689.0
21 TraesCS5B01G243500 chr4B 91.124 169 14 1 103 270 237949860 237949692 6.900000e-56 228.0
22 TraesCS5B01G243500 chr4D 95.249 442 21 0 1022 1463 352580006 352580447 0.000000e+00 701.0
23 TraesCS5B01G243500 chr6B 91.880 468 32 3 997 1458 145043634 145044101 0.000000e+00 649.0
24 TraesCS5B01G243500 chr3B 99.408 169 1 0 429 597 145317739 145317571 8.620000e-80 307.0
25 TraesCS5B01G243500 chr3B 97.561 164 4 0 429 592 155655916 155656079 5.220000e-72 281.0
26 TraesCS5B01G243500 chr2A 99.408 169 1 0 429 597 9676695 9676863 8.620000e-80 307.0
27 TraesCS5B01G243500 chr2A 96.053 152 6 0 2329 2480 588277454 588277303 5.300000e-62 248.0
28 TraesCS5B01G243500 chr2A 100.000 104 0 0 429 532 9674958 9675061 2.520000e-45 193.0
29 TraesCS5B01G243500 chr2A 85.380 171 18 5 105 271 379152318 379152485 1.180000e-38 171.0
30 TraesCS5B01G243500 chr2A 96.053 76 3 0 522 597 12361070 12360995 9.310000e-25 124.0
31 TraesCS5B01G243500 chr6A 93.143 175 5 2 429 597 539530375 539530548 1.470000e-62 250.0
32 TraesCS5B01G243500 chr6A 91.667 96 6 2 12 105 294425692 294425787 5.570000e-27 132.0
33 TraesCS5B01G243500 chr6A 95.000 40 1 1 63 101 502359935 502359974 7.410000e-06 62.1
34 TraesCS5B01G243500 chr7A 96.622 148 5 0 2333 2480 567641639 567641786 1.900000e-61 246.0
35 TraesCS5B01G243500 chr7A 95.364 151 7 0 2330 2480 356547094 356547244 8.860000e-60 241.0
36 TraesCS5B01G243500 chr7A 91.304 92 7 1 429 520 404163929 404164019 9.310000e-25 124.0
37 TraesCS5B01G243500 chr3A 96.599 147 5 0 2334 2480 234941714 234941860 6.850000e-61 244.0
38 TraesCS5B01G243500 chr3A 95.946 148 6 0 2333 2480 554884462 554884315 8.860000e-60 241.0
39 TraesCS5B01G243500 chr1A 95.364 151 7 0 2330 2480 161229189 161229339 8.860000e-60 241.0
40 TraesCS5B01G243500 chr1A 100.000 28 0 0 63 90 532231827 532231854 4.000000e-03 52.8
41 TraesCS5B01G243500 chr1D 91.124 169 13 2 103 270 452489767 452489600 6.900000e-56 228.0
42 TraesCS5B01G243500 chr1B 88.824 170 18 1 103 271 334657477 334657308 8.990000e-50 207.0
43 TraesCS5B01G243500 chr6D 87.209 172 20 2 103 273 470928333 470928163 7.000000e-46 195.0
44 TraesCS5B01G243500 chr2D 88.667 150 15 2 122 270 600415665 600415813 5.450000e-42 182.0
45 TraesCS5B01G243500 chr7B 91.753 97 6 2 7 101 55067897 55067801 1.550000e-27 134.0
46 TraesCS5B01G243500 chr7D 92.308 39 2 1 63 100 70123657 70123619 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G243500 chr5B 423795185 423797664 2479 False 4580 4580 100.0000 1 2480 1 chr5B.!!$F2 2479
1 TraesCS5B01G243500 chr5D 358797796 358799775 1979 False 756 1805 90.8020 268 2330 3 chr5D.!!$F1 2062
2 TraesCS5B01G243500 chr5A 459542379 459544005 1626 False 907 1631 91.9265 701 2338 2 chr5A.!!$F2 1637
3 TraesCS5B01G243500 chr4A 112857597 112858362 765 True 739 739 84.6250 716 1463 1 chr4A.!!$R3 747
4 TraesCS5B01G243500 chr4B 436098172 436103022 4850 False 713 737 89.6560 713 1463 2 chr4B.!!$F1 750
5 TraesCS5B01G243500 chr2A 9674958 9676863 1905 False 250 307 99.7040 429 597 2 chr2A.!!$F2 168

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.037605 CAACGTACGGGCCTTTCTCT 60.038 55.0 21.06 0.0 0.0 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1969 6974 0.042431 AGGGATCACAGAGTCCAGCT 59.958 55.0 0.0 0.0 36.19 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 8.824756 TTTACAGAGTAGAGATATGTGAAGGT 57.175 34.615 0.00 0.00 0.00 3.50
59 60 8.824756 TTACAGAGTAGAGATATGTGAAGGTT 57.175 34.615 0.00 0.00 0.00 3.50
60 61 7.106439 ACAGAGTAGAGATATGTGAAGGTTG 57.894 40.000 0.00 0.00 0.00 3.77
61 62 5.982516 CAGAGTAGAGATATGTGAAGGTTGC 59.017 44.000 0.00 0.00 0.00 4.17
62 63 5.896678 AGAGTAGAGATATGTGAAGGTTGCT 59.103 40.000 0.00 0.00 0.00 3.91
63 64 6.382570 AGAGTAGAGATATGTGAAGGTTGCTT 59.617 38.462 0.00 0.00 0.00 3.91
64 65 6.951971 AGTAGAGATATGTGAAGGTTGCTTT 58.048 36.000 0.00 0.00 0.00 3.51
65 66 7.398024 AGTAGAGATATGTGAAGGTTGCTTTT 58.602 34.615 0.00 0.00 0.00 2.27
66 67 7.885399 AGTAGAGATATGTGAAGGTTGCTTTTT 59.115 33.333 0.00 0.00 0.00 1.94
89 90 4.079748 CGTTGCAACGTACGGGCC 62.080 66.667 37.16 13.47 46.63 5.80
90 91 2.667199 GTTGCAACGTACGGGCCT 60.667 61.111 24.90 1.15 0.00 5.19
91 92 2.111460 TTGCAACGTACGGGCCTT 59.889 55.556 24.90 7.29 0.00 4.35
92 93 1.526455 TTGCAACGTACGGGCCTTT 60.526 52.632 24.90 6.94 0.00 3.11
93 94 1.508808 TTGCAACGTACGGGCCTTTC 61.509 55.000 24.90 5.57 0.00 2.62
94 95 1.670083 GCAACGTACGGGCCTTTCT 60.670 57.895 21.06 0.00 0.00 2.52
95 96 1.632948 GCAACGTACGGGCCTTTCTC 61.633 60.000 21.06 0.00 0.00 2.87
96 97 0.037605 CAACGTACGGGCCTTTCTCT 60.038 55.000 21.06 0.00 0.00 3.10
97 98 1.203052 CAACGTACGGGCCTTTCTCTA 59.797 52.381 21.06 0.00 0.00 2.43
98 99 1.101331 ACGTACGGGCCTTTCTCTAG 58.899 55.000 21.06 0.00 0.00 2.43
99 100 1.101331 CGTACGGGCCTTTCTCTAGT 58.899 55.000 7.57 0.00 0.00 2.57
100 101 2.292267 CGTACGGGCCTTTCTCTAGTA 58.708 52.381 7.57 0.00 0.00 1.82
101 102 2.290093 CGTACGGGCCTTTCTCTAGTAG 59.710 54.545 7.57 0.00 0.00 2.57
102 103 2.528673 ACGGGCCTTTCTCTAGTAGT 57.471 50.000 0.84 0.00 0.00 2.73
103 104 3.659183 ACGGGCCTTTCTCTAGTAGTA 57.341 47.619 0.84 0.00 0.00 1.82
104 105 3.973425 ACGGGCCTTTCTCTAGTAGTAA 58.027 45.455 0.84 0.00 0.00 2.24
105 106 4.347607 ACGGGCCTTTCTCTAGTAGTAAA 58.652 43.478 0.84 0.00 0.00 2.01
106 107 4.774200 ACGGGCCTTTCTCTAGTAGTAAAA 59.226 41.667 0.84 0.00 0.00 1.52
107 108 5.424573 ACGGGCCTTTCTCTAGTAGTAAAAT 59.575 40.000 0.84 0.00 0.00 1.82
108 109 5.753921 CGGGCCTTTCTCTAGTAGTAAAATG 59.246 44.000 0.84 0.00 0.00 2.32
109 110 6.629739 CGGGCCTTTCTCTAGTAGTAAAATGT 60.630 42.308 0.84 0.00 0.00 2.71
110 111 7.417116 CGGGCCTTTCTCTAGTAGTAAAATGTA 60.417 40.741 0.84 0.00 0.00 2.29
111 112 8.262933 GGGCCTTTCTCTAGTAGTAAAATGTAA 58.737 37.037 0.84 0.00 0.00 2.41
112 113 9.662947 GGCCTTTCTCTAGTAGTAAAATGTAAA 57.337 33.333 0.00 0.00 0.00 2.01
164 165 8.816640 GAAAGCTCTTTCAAATACAAATCCAA 57.183 30.769 15.32 0.00 46.03 3.53
165 166 8.593492 AAAGCTCTTTCAAATACAAATCCAAC 57.407 30.769 0.00 0.00 0.00 3.77
166 167 7.288810 AGCTCTTTCAAATACAAATCCAACA 57.711 32.000 0.00 0.00 0.00 3.33
167 168 7.373493 AGCTCTTTCAAATACAAATCCAACAG 58.627 34.615 0.00 0.00 0.00 3.16
168 169 7.014615 AGCTCTTTCAAATACAAATCCAACAGT 59.985 33.333 0.00 0.00 0.00 3.55
169 170 7.115378 GCTCTTTCAAATACAAATCCAACAGTG 59.885 37.037 0.00 0.00 0.00 3.66
170 171 8.006298 TCTTTCAAATACAAATCCAACAGTGT 57.994 30.769 0.00 0.00 0.00 3.55
171 172 9.126151 TCTTTCAAATACAAATCCAACAGTGTA 57.874 29.630 0.00 0.00 0.00 2.90
172 173 9.180678 CTTTCAAATACAAATCCAACAGTGTAC 57.819 33.333 0.00 0.00 29.71 2.90
173 174 8.458573 TTCAAATACAAATCCAACAGTGTACT 57.541 30.769 0.00 0.00 29.71 2.73
174 175 8.458573 TCAAATACAAATCCAACAGTGTACTT 57.541 30.769 0.00 0.00 29.71 2.24
175 176 8.908903 TCAAATACAAATCCAACAGTGTACTTT 58.091 29.630 0.00 0.00 29.71 2.66
176 177 9.528018 CAAATACAAATCCAACAGTGTACTTTT 57.472 29.630 0.00 0.00 29.71 2.27
178 179 9.528018 AATACAAATCCAACAGTGTACTTTTTG 57.472 29.630 14.90 14.90 29.71 2.44
179 180 6.930731 ACAAATCCAACAGTGTACTTTTTGT 58.069 32.000 15.78 15.78 31.86 2.83
180 181 8.057536 ACAAATCCAACAGTGTACTTTTTGTA 57.942 30.769 18.22 0.00 34.17 2.41
181 182 8.188139 ACAAATCCAACAGTGTACTTTTTGTAG 58.812 33.333 18.22 2.81 34.17 2.74
182 183 5.744666 TCCAACAGTGTACTTTTTGTAGC 57.255 39.130 0.00 0.00 0.00 3.58
183 184 5.186942 TCCAACAGTGTACTTTTTGTAGCA 58.813 37.500 0.00 0.00 0.00 3.49
184 185 5.065474 TCCAACAGTGTACTTTTTGTAGCAC 59.935 40.000 0.00 0.00 35.45 4.40
185 186 5.163703 CCAACAGTGTACTTTTTGTAGCACA 60.164 40.000 0.00 0.00 36.52 4.57
186 187 6.459573 CCAACAGTGTACTTTTTGTAGCACAT 60.460 38.462 0.00 0.00 36.52 3.21
187 188 7.254966 CCAACAGTGTACTTTTTGTAGCACATA 60.255 37.037 0.00 0.00 36.52 2.29
188 189 7.979444 ACAGTGTACTTTTTGTAGCACATAT 57.021 32.000 0.00 0.00 36.52 1.78
189 190 8.029642 ACAGTGTACTTTTTGTAGCACATATC 57.970 34.615 0.00 0.00 36.52 1.63
190 191 7.119262 ACAGTGTACTTTTTGTAGCACATATCC 59.881 37.037 0.00 0.00 36.52 2.59
191 192 7.334421 CAGTGTACTTTTTGTAGCACATATCCT 59.666 37.037 0.00 0.00 36.52 3.24
192 193 8.537016 AGTGTACTTTTTGTAGCACATATCCTA 58.463 33.333 0.00 0.00 36.52 2.94
193 194 9.326413 GTGTACTTTTTGTAGCACATATCCTAT 57.674 33.333 0.00 0.00 35.38 2.57
194 195 9.542462 TGTACTTTTTGTAGCACATATCCTATC 57.458 33.333 0.00 0.00 0.00 2.08
195 196 9.765795 GTACTTTTTGTAGCACATATCCTATCT 57.234 33.333 0.00 0.00 0.00 1.98
197 198 9.686683 ACTTTTTGTAGCACATATCCTATCTTT 57.313 29.630 0.00 0.00 0.00 2.52
226 227 7.578310 AGTCATATGAATGATCAAAGGTTGG 57.422 36.000 7.07 0.00 43.87 3.77
227 228 6.040166 AGTCATATGAATGATCAAAGGTTGGC 59.960 38.462 7.07 0.00 43.87 4.52
228 229 6.040166 GTCATATGAATGATCAAAGGTTGGCT 59.960 38.462 7.07 0.00 43.87 4.75
229 230 4.996788 ATGAATGATCAAAGGTTGGCTC 57.003 40.909 0.00 0.00 39.49 4.70
230 231 3.765381 TGAATGATCAAAGGTTGGCTCA 58.235 40.909 0.00 0.00 30.99 4.26
231 232 4.151121 TGAATGATCAAAGGTTGGCTCAA 58.849 39.130 0.00 0.00 30.99 3.02
232 233 4.588106 TGAATGATCAAAGGTTGGCTCAAA 59.412 37.500 0.00 0.00 30.99 2.69
233 234 5.070180 TGAATGATCAAAGGTTGGCTCAAAA 59.930 36.000 0.00 0.00 30.99 2.44
234 235 5.750352 ATGATCAAAGGTTGGCTCAAAAT 57.250 34.783 0.00 0.00 0.00 1.82
235 236 6.855763 ATGATCAAAGGTTGGCTCAAAATA 57.144 33.333 0.00 0.00 0.00 1.40
236 237 6.024552 TGATCAAAGGTTGGCTCAAAATAC 57.975 37.500 0.00 0.00 0.00 1.89
237 238 5.774690 TGATCAAAGGTTGGCTCAAAATACT 59.225 36.000 0.00 0.00 0.00 2.12
238 239 6.945435 TGATCAAAGGTTGGCTCAAAATACTA 59.055 34.615 0.00 0.00 0.00 1.82
239 240 6.817765 TCAAAGGTTGGCTCAAAATACTAG 57.182 37.500 0.00 0.00 0.00 2.57
240 241 5.710099 TCAAAGGTTGGCTCAAAATACTAGG 59.290 40.000 0.00 0.00 0.00 3.02
241 242 4.236527 AGGTTGGCTCAAAATACTAGGG 57.763 45.455 0.00 0.00 0.00 3.53
242 243 3.850173 AGGTTGGCTCAAAATACTAGGGA 59.150 43.478 0.00 0.00 0.00 4.20
243 244 4.080299 AGGTTGGCTCAAAATACTAGGGAG 60.080 45.833 0.00 0.00 0.00 4.30
253 254 9.262358 CTCAAAATACTAGGGAGCATACTAAAC 57.738 37.037 0.00 0.00 0.00 2.01
254 255 8.208903 TCAAAATACTAGGGAGCATACTAAACC 58.791 37.037 0.00 0.00 0.00 3.27
255 256 6.683312 AATACTAGGGAGCATACTAAACCC 57.317 41.667 0.00 0.00 40.71 4.11
256 257 2.963782 ACTAGGGAGCATACTAAACCCG 59.036 50.000 0.00 0.00 44.57 5.28
257 258 1.129058 AGGGAGCATACTAAACCCGG 58.871 55.000 0.00 0.00 44.57 5.73
258 259 1.125633 GGGAGCATACTAAACCCGGA 58.874 55.000 0.73 0.00 0.00 5.14
259 260 1.202615 GGGAGCATACTAAACCCGGAC 60.203 57.143 0.73 0.00 0.00 4.79
260 261 1.537562 GGAGCATACTAAACCCGGACG 60.538 57.143 0.73 0.00 0.00 4.79
261 262 0.462789 AGCATACTAAACCCGGACGG 59.537 55.000 0.73 3.25 37.81 4.79
262 263 0.461135 GCATACTAAACCCGGACGGA 59.539 55.000 13.13 0.00 37.50 4.69
263 264 1.537562 GCATACTAAACCCGGACGGAG 60.538 57.143 13.13 3.95 37.50 4.63
264 265 1.068127 CATACTAAACCCGGACGGAGG 59.932 57.143 13.13 0.00 37.50 4.30
265 266 0.039618 TACTAAACCCGGACGGAGGT 59.960 55.000 13.13 0.00 38.27 3.85
266 267 0.039618 ACTAAACCCGGACGGAGGTA 59.960 55.000 13.13 0.12 34.45 3.08
280 281 5.367302 GACGGAGGTAGTAGTATGAACTCT 58.633 45.833 0.00 0.00 37.15 3.24
281 282 5.753716 ACGGAGGTAGTAGTATGAACTCTT 58.246 41.667 0.00 0.00 37.15 2.85
282 283 5.821995 ACGGAGGTAGTAGTATGAACTCTTC 59.178 44.000 0.00 0.00 37.15 2.87
283 284 5.239087 CGGAGGTAGTAGTATGAACTCTTCC 59.761 48.000 0.00 0.00 37.15 3.46
308 309 5.316167 TGCTATGTTTGAACTCCAGTGATT 58.684 37.500 0.00 0.00 0.00 2.57
313 314 9.166173 CTATGTTTGAACTCCAGTGATTTATGA 57.834 33.333 0.00 0.00 0.00 2.15
319 320 7.552459 TGAACTCCAGTGATTTATGATTACGA 58.448 34.615 0.00 0.00 0.00 3.43
325 326 6.146184 CCAGTGATTTATGATTACGAGCGAAT 59.854 38.462 0.00 0.00 0.00 3.34
328 329 9.424319 AGTGATTTATGATTACGAGCGAATTAT 57.576 29.630 0.00 0.00 0.00 1.28
343 344 7.007725 CGAGCGAATTATTGATTTGAATATGCC 59.992 37.037 0.00 0.00 31.72 4.40
402 403 5.321516 CGACATCCTGTAAAAATCGTTTCC 58.678 41.667 0.00 0.00 0.00 3.13
532 533 1.933853 GGGTCGTTCTTCATCCAATCG 59.066 52.381 0.00 0.00 0.00 3.34
533 534 2.618053 GGTCGTTCTTCATCCAATCGT 58.382 47.619 0.00 0.00 0.00 3.73
534 535 3.429822 GGGTCGTTCTTCATCCAATCGTA 60.430 47.826 0.00 0.00 0.00 3.43
535 536 4.369182 GGTCGTTCTTCATCCAATCGTAT 58.631 43.478 0.00 0.00 0.00 3.06
536 537 4.444720 GGTCGTTCTTCATCCAATCGTATC 59.555 45.833 0.00 0.00 0.00 2.24
537 538 5.282510 GTCGTTCTTCATCCAATCGTATCT 58.717 41.667 0.00 0.00 0.00 1.98
538 539 5.749109 GTCGTTCTTCATCCAATCGTATCTT 59.251 40.000 0.00 0.00 0.00 2.40
539 540 5.748630 TCGTTCTTCATCCAATCGTATCTTG 59.251 40.000 0.00 0.00 0.00 3.02
540 541 5.557136 CGTTCTTCATCCAATCGTATCTTGC 60.557 44.000 0.00 0.00 0.00 4.01
541 542 4.380531 TCTTCATCCAATCGTATCTTGCC 58.619 43.478 0.00 0.00 0.00 4.52
542 543 3.836365 TCATCCAATCGTATCTTGCCA 57.164 42.857 0.00 0.00 0.00 4.92
543 544 3.732212 TCATCCAATCGTATCTTGCCAG 58.268 45.455 0.00 0.00 0.00 4.85
544 545 3.387699 TCATCCAATCGTATCTTGCCAGA 59.612 43.478 0.00 0.00 0.00 3.86
545 546 3.179443 TCCAATCGTATCTTGCCAGAC 57.821 47.619 0.00 0.00 0.00 3.51
546 547 2.158957 TCCAATCGTATCTTGCCAGACC 60.159 50.000 0.00 0.00 0.00 3.85
549 550 0.175760 TCGTATCTTGCCAGACCAGC 59.824 55.000 0.00 0.00 0.00 4.85
550 551 0.176680 CGTATCTTGCCAGACCAGCT 59.823 55.000 0.00 0.00 0.00 4.24
551 552 1.406069 CGTATCTTGCCAGACCAGCTT 60.406 52.381 0.00 0.00 0.00 3.74
553 554 1.831580 ATCTTGCCAGACCAGCTTTC 58.168 50.000 0.00 0.00 0.00 2.62
554 555 0.473755 TCTTGCCAGACCAGCTTTCA 59.526 50.000 0.00 0.00 0.00 2.69
556 557 1.165907 TTGCCAGACCAGCTTTCACG 61.166 55.000 0.00 0.00 0.00 4.35
558 559 0.320421 GCCAGACCAGCTTTCACGTA 60.320 55.000 0.00 0.00 0.00 3.57
559 560 1.876416 GCCAGACCAGCTTTCACGTAA 60.876 52.381 0.00 0.00 0.00 3.18
561 562 2.288825 CCAGACCAGCTTTCACGTAAGA 60.289 50.000 2.21 0.00 43.62 2.10
563 564 3.997021 CAGACCAGCTTTCACGTAAGATT 59.003 43.478 2.21 0.00 43.62 2.40
564 565 5.168569 CAGACCAGCTTTCACGTAAGATTA 58.831 41.667 2.21 0.00 43.62 1.75
581 582 6.783892 AAGATTACGTTTGCCTTTTACGTA 57.216 33.333 0.00 0.00 45.59 3.57
585 586 4.657075 ACGTTTGCCTTTTACGTAGATG 57.343 40.909 0.00 0.00 45.59 2.90
586 587 4.060205 ACGTTTGCCTTTTACGTAGATGT 58.940 39.130 0.00 0.00 45.59 3.06
588 589 5.346822 ACGTTTGCCTTTTACGTAGATGTAG 59.653 40.000 0.00 0.00 45.59 2.74
589 590 5.557388 GTTTGCCTTTTACGTAGATGTAGC 58.443 41.667 0.00 0.00 0.00 3.58
590 591 4.459390 TGCCTTTTACGTAGATGTAGCA 57.541 40.909 0.00 0.00 0.00 3.49
591 592 4.823157 TGCCTTTTACGTAGATGTAGCAA 58.177 39.130 0.00 0.00 0.00 3.91
592 593 5.239351 TGCCTTTTACGTAGATGTAGCAAA 58.761 37.500 0.00 0.00 0.00 3.68
593 594 5.350365 TGCCTTTTACGTAGATGTAGCAAAG 59.650 40.000 0.00 0.51 0.00 2.77
594 595 5.726963 GCCTTTTACGTAGATGTAGCAAAGC 60.727 44.000 0.00 0.00 0.00 3.51
597 598 1.831736 ACGTAGATGTAGCAAAGCCCT 59.168 47.619 0.00 0.00 0.00 5.19
598 599 2.205074 CGTAGATGTAGCAAAGCCCTG 58.795 52.381 0.00 0.00 0.00 4.45
599 600 2.418746 CGTAGATGTAGCAAAGCCCTGT 60.419 50.000 0.00 0.00 0.00 4.00
600 601 3.181479 CGTAGATGTAGCAAAGCCCTGTA 60.181 47.826 0.00 0.00 0.00 2.74
601 602 3.550437 AGATGTAGCAAAGCCCTGTAG 57.450 47.619 0.00 0.00 0.00 2.74
602 603 2.171448 AGATGTAGCAAAGCCCTGTAGG 59.829 50.000 0.00 0.00 39.47 3.18
603 604 1.651737 TGTAGCAAAGCCCTGTAGGA 58.348 50.000 0.00 0.00 38.24 2.94
604 605 2.196595 TGTAGCAAAGCCCTGTAGGAT 58.803 47.619 0.00 0.00 38.24 3.24
606 607 3.778075 TGTAGCAAAGCCCTGTAGGATTA 59.222 43.478 0.00 0.00 45.98 1.75
608 609 4.526438 AGCAAAGCCCTGTAGGATTATT 57.474 40.909 0.00 0.00 45.98 1.40
610 611 3.243535 GCAAAGCCCTGTAGGATTATTGC 60.244 47.826 0.00 7.11 45.98 3.56
626 627 2.032965 TTGCTACACCCACTCCCTAA 57.967 50.000 0.00 0.00 0.00 2.69
627 628 1.568504 TGCTACACCCACTCCCTAAG 58.431 55.000 0.00 0.00 0.00 2.18
681 682 4.515107 GCGAAACTCACCGCTTTG 57.485 55.556 0.00 0.00 46.96 2.77
682 683 1.938861 GCGAAACTCACCGCTTTGA 59.061 52.632 0.00 0.00 46.96 2.69
683 684 0.517316 GCGAAACTCACCGCTTTGAT 59.483 50.000 0.00 0.00 46.96 2.57
684 685 1.464189 GCGAAACTCACCGCTTTGATC 60.464 52.381 0.00 0.00 46.96 2.92
685 686 1.201812 CGAAACTCACCGCTTTGATCG 60.202 52.381 0.00 0.00 0.00 3.69
686 687 0.517316 AAACTCACCGCTTTGATCGC 59.483 50.000 0.00 0.00 0.00 4.58
734 735 3.431725 GCGGGAAAACAGAGGCGG 61.432 66.667 0.00 0.00 0.00 6.13
735 736 3.431725 CGGGAAAACAGAGGCGGC 61.432 66.667 0.00 0.00 0.00 6.53
773 774 1.198713 ATCTCCTCGCACCTGATTGT 58.801 50.000 0.00 0.00 0.00 2.71
842 844 2.386935 CCAACCCCCTCCAGATCCC 61.387 68.421 0.00 0.00 0.00 3.85
984 1111 2.062177 CCCAATCCCGACCTACCGT 61.062 63.158 0.00 0.00 0.00 4.83
1365 6344 4.875713 GGCGGCGTGATCCCCAAT 62.876 66.667 9.37 0.00 0.00 3.16
1380 6359 1.684869 CCCAATATCAACCCGGTGCTT 60.685 52.381 0.00 0.00 0.00 3.91
1490 6469 3.027412 AGAAGGCTTAAGAGAGATGCGA 58.973 45.455 6.67 0.00 0.00 5.10
1496 6475 4.022762 GGCTTAAGAGAGATGCGATCTGTA 60.023 45.833 6.67 0.00 40.38 2.74
1526 6505 2.549926 CTGTGTGCTGTGTAGTGTTCA 58.450 47.619 0.00 0.00 0.00 3.18
1537 6516 6.036577 TGTGTAGTGTTCATCTGAATAGCA 57.963 37.500 0.00 0.00 36.33 3.49
1561 6540 3.060602 GTGAAGGTGTGTTCTGTCTAGC 58.939 50.000 0.00 0.00 0.00 3.42
1574 6553 4.344978 TCTGTCTAGCTGTTGATGTACCT 58.655 43.478 0.00 0.00 0.00 3.08
1638 6620 5.412640 TGAATTTCCAAATATGCTGCTGTG 58.587 37.500 0.00 0.00 0.00 3.66
1639 6621 3.872511 TTTCCAAATATGCTGCTGTGG 57.127 42.857 0.00 0.00 0.00 4.17
1643 6625 2.480759 CCAAATATGCTGCTGTGGCTTC 60.481 50.000 0.00 0.00 39.59 3.86
1645 6627 1.442526 ATATGCTGCTGTGGCTTCGC 61.443 55.000 0.00 0.00 39.59 4.70
1656 6638 2.555547 GGCTTCGCCTTGTTGCACT 61.556 57.895 0.00 0.00 46.69 4.40
1674 6656 3.755378 GCACTGGAGATTTGAATCACTGT 59.245 43.478 6.50 6.02 37.89 3.55
1675 6657 4.937620 GCACTGGAGATTTGAATCACTGTA 59.062 41.667 6.50 0.00 37.89 2.74
1682 6664 2.073117 TTGAATCACTGTAGCGCGAA 57.927 45.000 12.10 0.00 0.00 4.70
1691 6673 0.953471 TGTAGCGCGAATTGTTGCCT 60.953 50.000 12.10 0.00 0.00 4.75
1699 6681 0.387239 GAATTGTTGCCTGTGTCGCC 60.387 55.000 0.00 0.00 0.00 5.54
1700 6682 1.106351 AATTGTTGCCTGTGTCGCCA 61.106 50.000 0.00 0.00 0.00 5.69
1763 6748 4.460263 TGCTTGTGGATTCAGTTTACTGT 58.540 39.130 9.53 0.00 44.12 3.55
1766 6751 5.008613 GCTTGTGGATTCAGTTTACTGTTCA 59.991 40.000 9.53 0.00 44.12 3.18
1767 6752 6.459573 GCTTGTGGATTCAGTTTACTGTTCAA 60.460 38.462 9.53 0.00 44.12 2.69
1768 6753 7.581213 TTGTGGATTCAGTTTACTGTTCAAT 57.419 32.000 9.53 2.98 44.12 2.57
1769 6754 7.581213 TGTGGATTCAGTTTACTGTTCAATT 57.419 32.000 9.53 0.00 44.12 2.32
1779 6764 9.329913 CAGTTTACTGTTCAATTATTTTCTCCG 57.670 33.333 1.69 0.00 39.09 4.63
1780 6765 9.280174 AGTTTACTGTTCAATTATTTTCTCCGA 57.720 29.630 0.00 0.00 0.00 4.55
1783 6768 7.979444 ACTGTTCAATTATTTTCTCCGAGAA 57.021 32.000 6.75 6.75 31.28 2.87
1802 6800 5.613358 AGAAAGCAGTAAACTATGCACAC 57.387 39.130 0.00 0.00 45.01 3.82
1805 6803 4.749245 AGCAGTAAACTATGCACACAAC 57.251 40.909 0.00 0.00 45.01 3.32
1814 6813 0.465460 ATGCACACAACCGGACAGTT 60.465 50.000 9.46 0.00 0.00 3.16
1816 6815 0.865769 GCACACAACCGGACAGTTAG 59.134 55.000 9.46 0.00 0.00 2.34
1823 6822 3.074412 CAACCGGACAGTTAGCTGAATT 58.926 45.455 9.46 0.00 45.28 2.17
1829 6828 4.034510 CGGACAGTTAGCTGAATTTGGATC 59.965 45.833 14.09 0.00 45.28 3.36
1830 6829 5.189180 GGACAGTTAGCTGAATTTGGATCT 58.811 41.667 14.09 0.00 45.28 2.75
1834 6833 8.273780 ACAGTTAGCTGAATTTGGATCTAAAG 57.726 34.615 14.09 0.00 45.28 1.85
1835 6834 7.337942 ACAGTTAGCTGAATTTGGATCTAAAGG 59.662 37.037 14.09 2.30 45.28 3.11
1836 6835 7.337942 CAGTTAGCTGAATTTGGATCTAAAGGT 59.662 37.037 10.20 4.57 45.28 3.50
1837 6836 8.548877 AGTTAGCTGAATTTGGATCTAAAGGTA 58.451 33.333 10.20 3.67 0.00 3.08
1838 6837 9.174166 GTTAGCTGAATTTGGATCTAAAGGTAA 57.826 33.333 10.20 9.00 0.00 2.85
1878 6882 6.867816 CGATGAAATTCTGTTGGGAATTGAAA 59.132 34.615 3.68 0.00 42.77 2.69
1879 6883 7.062605 CGATGAAATTCTGTTGGGAATTGAAAG 59.937 37.037 3.68 0.00 42.77 2.62
1880 6884 7.123355 TGAAATTCTGTTGGGAATTGAAAGT 57.877 32.000 3.68 0.00 42.77 2.66
1892 6896 5.946377 GGGAATTGAAAGTCCTGTCAATACT 59.054 40.000 12.04 0.00 42.30 2.12
1936 6941 2.731968 GCAAATAGCATCCACCACAACG 60.732 50.000 0.00 0.00 44.79 4.10
1941 6946 1.503818 GCATCCACCACAACGAACGT 61.504 55.000 0.00 0.00 0.00 3.99
1960 6965 0.179094 TTTCACGCCACAGAAGTCGT 60.179 50.000 0.00 0.00 35.35 4.34
1969 6974 2.034685 CCACAGAAGTCGTCTTGTCTCA 59.965 50.000 0.00 0.00 32.70 3.27
1977 6982 0.600557 CGTCTTGTCTCAGCTGGACT 59.399 55.000 25.75 0.00 35.04 3.85
1985 6990 2.098614 TCTCAGCTGGACTCTGTGATC 58.901 52.381 15.13 0.00 31.54 2.92
1988 6993 0.042431 AGCTGGACTCTGTGATCCCT 59.958 55.000 0.00 0.00 33.69 4.20
1996 7001 4.249661 GACTCTGTGATCCCTGAAGTTTC 58.750 47.826 0.00 0.00 0.00 2.78
2009 7014 0.693049 AAGTTTCCACGGAGGCAGAT 59.307 50.000 0.00 0.00 37.29 2.90
2028 7033 1.344065 TGACTCCGGGCTTTACTTGA 58.656 50.000 0.00 0.00 0.00 3.02
2037 7042 0.653114 GCTTTACTTGAGCTAGCGGC 59.347 55.000 9.55 6.37 42.19 6.53
2100 7105 1.002017 CCCTTCACTACCGGGGGTA 59.998 63.158 6.32 0.00 37.09 3.69
2129 7161 6.640518 TCCGAACTAGCAAATCTCTGTAAAT 58.359 36.000 0.00 0.00 0.00 1.40
2167 7255 1.714794 ATAAGTGCGCTGTCAGTGAC 58.285 50.000 17.65 16.68 0.00 3.67
2175 7263 1.332028 CGCTGTCAGTGACGTCAAAAC 60.332 52.381 21.95 17.98 34.95 2.43
2196 7284 0.944386 CTCAACCCCGTTGTGAACAG 59.056 55.000 4.56 0.00 43.23 3.16
2200 7288 1.358759 CCCCGTTGTGAACAGCAAC 59.641 57.895 0.00 0.00 41.81 4.17
2204 7292 2.450160 CCGTTGTGAACAGCAACTTTC 58.550 47.619 6.61 0.00 42.73 2.62
2250 7338 1.685517 TGGCAGCAGCATGTAAAAACA 59.314 42.857 2.65 0.00 44.61 2.83
2284 7373 2.571202 TCCTGCAACACACCATCTGATA 59.429 45.455 0.00 0.00 0.00 2.15
2337 7426 1.582389 AGAATCAGCTTCTCAGGCCT 58.418 50.000 0.00 0.00 40.26 5.19
2338 7427 1.485895 AGAATCAGCTTCTCAGGCCTC 59.514 52.381 0.00 0.00 40.26 4.70
2339 7428 0.545646 AATCAGCTTCTCAGGCCTCC 59.454 55.000 0.00 0.00 0.00 4.30
2340 7429 0.326427 ATCAGCTTCTCAGGCCTCCT 60.326 55.000 0.00 0.00 0.00 3.69
2341 7430 0.546267 TCAGCTTCTCAGGCCTCCTT 60.546 55.000 0.00 0.00 0.00 3.36
2342 7431 0.327591 CAGCTTCTCAGGCCTCCTTT 59.672 55.000 0.00 0.00 0.00 3.11
2343 7432 0.327591 AGCTTCTCAGGCCTCCTTTG 59.672 55.000 0.00 0.00 0.00 2.77
2344 7433 0.679321 GCTTCTCAGGCCTCCTTTGG 60.679 60.000 0.00 0.00 0.00 3.28
2345 7434 0.695347 CTTCTCAGGCCTCCTTTGGT 59.305 55.000 0.00 0.00 0.00 3.67
2346 7435 1.074566 CTTCTCAGGCCTCCTTTGGTT 59.925 52.381 0.00 0.00 0.00 3.67
2347 7436 1.149101 TCTCAGGCCTCCTTTGGTTT 58.851 50.000 0.00 0.00 0.00 3.27
2348 7437 1.202927 TCTCAGGCCTCCTTTGGTTTG 60.203 52.381 0.00 0.00 0.00 2.93
2349 7438 0.555769 TCAGGCCTCCTTTGGTTTGT 59.444 50.000 0.00 0.00 0.00 2.83
2350 7439 1.777878 TCAGGCCTCCTTTGGTTTGTA 59.222 47.619 0.00 0.00 0.00 2.41
2351 7440 2.162681 CAGGCCTCCTTTGGTTTGTAG 58.837 52.381 0.00 0.00 0.00 2.74
2352 7441 1.075536 AGGCCTCCTTTGGTTTGTAGG 59.924 52.381 0.00 0.00 0.00 3.18
2353 7442 1.074889 GGCCTCCTTTGGTTTGTAGGA 59.925 52.381 0.00 0.00 36.65 2.94
2354 7443 2.291605 GGCCTCCTTTGGTTTGTAGGAT 60.292 50.000 0.00 0.00 37.44 3.24
2355 7444 3.431415 GCCTCCTTTGGTTTGTAGGATT 58.569 45.455 0.00 0.00 37.44 3.01
2356 7445 3.832490 GCCTCCTTTGGTTTGTAGGATTT 59.168 43.478 0.00 0.00 37.44 2.17
2357 7446 4.283467 GCCTCCTTTGGTTTGTAGGATTTT 59.717 41.667 0.00 0.00 37.44 1.82
2358 7447 5.221641 GCCTCCTTTGGTTTGTAGGATTTTT 60.222 40.000 0.00 0.00 37.44 1.94
2359 7448 6.223120 CCTCCTTTGGTTTGTAGGATTTTTG 58.777 40.000 0.00 0.00 37.44 2.44
2360 7449 6.183360 CCTCCTTTGGTTTGTAGGATTTTTGT 60.183 38.462 0.00 0.00 37.44 2.83
2361 7450 7.014808 CCTCCTTTGGTTTGTAGGATTTTTGTA 59.985 37.037 0.00 0.00 37.44 2.41
2362 7451 7.947282 TCCTTTGGTTTGTAGGATTTTTGTAG 58.053 34.615 0.00 0.00 33.23 2.74
2363 7452 7.014808 TCCTTTGGTTTGTAGGATTTTTGTAGG 59.985 37.037 0.00 0.00 33.23 3.18
2364 7453 7.014808 CCTTTGGTTTGTAGGATTTTTGTAGGA 59.985 37.037 0.00 0.00 0.00 2.94
2365 7454 7.899648 TTGGTTTGTAGGATTTTTGTAGGAA 57.100 32.000 0.00 0.00 0.00 3.36
2366 7455 8.485578 TTGGTTTGTAGGATTTTTGTAGGAAT 57.514 30.769 0.00 0.00 0.00 3.01
2367 7456 8.485578 TGGTTTGTAGGATTTTTGTAGGAATT 57.514 30.769 0.00 0.00 0.00 2.17
2368 7457 8.581578 TGGTTTGTAGGATTTTTGTAGGAATTC 58.418 33.333 0.00 0.00 0.00 2.17
2369 7458 8.803235 GGTTTGTAGGATTTTTGTAGGAATTCT 58.197 33.333 5.23 0.00 0.00 2.40
2385 7474 9.825109 GTAGGAATTCTATAGGATAGGATTTGC 57.175 37.037 5.23 0.00 0.00 3.68
2386 7475 8.454859 AGGAATTCTATAGGATAGGATTTGCA 57.545 34.615 5.23 0.00 0.00 4.08
2387 7476 8.894592 AGGAATTCTATAGGATAGGATTTGCAA 58.105 33.333 5.23 0.00 0.00 4.08
2388 7477 9.520515 GGAATTCTATAGGATAGGATTTGCAAA 57.479 33.333 15.44 15.44 0.00 3.68
2390 7479 9.525826 AATTCTATAGGATAGGATTTGCAAAGG 57.474 33.333 18.19 0.00 0.00 3.11
2391 7480 7.872061 TCTATAGGATAGGATTTGCAAAGGA 57.128 36.000 18.19 2.96 0.00 3.36
2392 7481 8.275187 TCTATAGGATAGGATTTGCAAAGGAA 57.725 34.615 18.19 3.55 0.00 3.36
2393 7482 8.723365 TCTATAGGATAGGATTTGCAAAGGAAA 58.277 33.333 18.19 3.91 0.00 3.13
2394 7483 9.354673 CTATAGGATAGGATTTGCAAAGGAAAA 57.645 33.333 18.19 2.48 0.00 2.29
2395 7484 6.933514 AGGATAGGATTTGCAAAGGAAAAA 57.066 33.333 18.19 1.42 0.00 1.94
2418 7507 5.833406 AAAATTTGAAGCCCTTTGGTTTG 57.167 34.783 0.00 0.00 34.87 2.93
2419 7508 4.502105 AATTTGAAGCCCTTTGGTTTGT 57.498 36.364 0.00 0.00 34.87 2.83
2420 7509 5.622346 AATTTGAAGCCCTTTGGTTTGTA 57.378 34.783 0.00 0.00 34.87 2.41
2421 7510 4.664150 TTTGAAGCCCTTTGGTTTGTAG 57.336 40.909 0.00 0.00 34.87 2.74
2422 7511 2.593026 TGAAGCCCTTTGGTTTGTAGG 58.407 47.619 0.00 0.00 34.87 3.18
2423 7512 2.175931 TGAAGCCCTTTGGTTTGTAGGA 59.824 45.455 0.00 0.00 34.87 2.94
2424 7513 3.227614 GAAGCCCTTTGGTTTGTAGGAA 58.772 45.455 0.00 0.00 34.87 3.36
2425 7514 3.542969 AGCCCTTTGGTTTGTAGGAAT 57.457 42.857 0.00 0.00 0.00 3.01
2426 7515 3.165071 AGCCCTTTGGTTTGTAGGAATG 58.835 45.455 0.00 0.00 0.00 2.67
2427 7516 2.233676 GCCCTTTGGTTTGTAGGAATGG 59.766 50.000 0.00 0.00 0.00 3.16
2428 7517 3.773560 CCCTTTGGTTTGTAGGAATGGA 58.226 45.455 0.00 0.00 0.00 3.41
2429 7518 4.352893 CCCTTTGGTTTGTAGGAATGGAT 58.647 43.478 0.00 0.00 0.00 3.41
2430 7519 4.777366 CCCTTTGGTTTGTAGGAATGGATT 59.223 41.667 0.00 0.00 0.00 3.01
2431 7520 5.105351 CCCTTTGGTTTGTAGGAATGGATTC 60.105 44.000 0.00 0.00 36.08 2.52
2468 7557 6.653989 AGGATAGGAATCAATCTTTCACGTT 58.346 36.000 0.00 0.00 33.41 3.99
2469 7558 7.112779 AGGATAGGAATCAATCTTTCACGTTT 58.887 34.615 0.00 0.00 33.41 3.60
2470 7559 7.611855 AGGATAGGAATCAATCTTTCACGTTTT 59.388 33.333 0.00 0.00 33.41 2.43
2471 7560 7.698130 GGATAGGAATCAATCTTTCACGTTTTG 59.302 37.037 0.00 0.00 33.41 2.44
2472 7561 5.772521 AGGAATCAATCTTTCACGTTTTGG 58.227 37.500 0.00 0.00 0.00 3.28
2473 7562 5.534654 AGGAATCAATCTTTCACGTTTTGGA 59.465 36.000 0.00 0.00 0.00 3.53
2474 7563 5.858581 GGAATCAATCTTTCACGTTTTGGAG 59.141 40.000 0.00 0.00 0.00 3.86
2475 7564 4.829064 TCAATCTTTCACGTTTTGGAGG 57.171 40.909 0.00 0.00 0.00 4.30
2477 7566 3.502123 ATCTTTCACGTTTTGGAGGGA 57.498 42.857 0.00 0.00 0.00 4.20
2478 7567 3.284793 TCTTTCACGTTTTGGAGGGAA 57.715 42.857 0.00 0.00 0.00 3.97
2479 7568 3.622630 TCTTTCACGTTTTGGAGGGAAA 58.377 40.909 0.00 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.427821 ACCTTCACATATCTCTACTCTGTAAAT 57.572 33.333 0.00 0.00 0.00 1.40
33 34 8.824756 ACCTTCACATATCTCTACTCTGTAAA 57.175 34.615 0.00 0.00 0.00 2.01
34 35 8.687242 CAACCTTCACATATCTCTACTCTGTAA 58.313 37.037 0.00 0.00 0.00 2.41
35 36 7.201830 GCAACCTTCACATATCTCTACTCTGTA 60.202 40.741 0.00 0.00 0.00 2.74
36 37 6.406400 GCAACCTTCACATATCTCTACTCTGT 60.406 42.308 0.00 0.00 0.00 3.41
37 38 5.982516 GCAACCTTCACATATCTCTACTCTG 59.017 44.000 0.00 0.00 0.00 3.35
38 39 5.896678 AGCAACCTTCACATATCTCTACTCT 59.103 40.000 0.00 0.00 0.00 3.24
39 40 6.155475 AGCAACCTTCACATATCTCTACTC 57.845 41.667 0.00 0.00 0.00 2.59
40 41 6.552445 AAGCAACCTTCACATATCTCTACT 57.448 37.500 0.00 0.00 0.00 2.57
41 42 7.617041 AAAAGCAACCTTCACATATCTCTAC 57.383 36.000 0.00 0.00 0.00 2.59
73 74 1.788067 AAAGGCCCGTACGTTGCAAC 61.788 55.000 19.89 19.89 0.00 4.17
74 75 1.508808 GAAAGGCCCGTACGTTGCAA 61.509 55.000 23.07 0.00 0.00 4.08
75 76 1.962306 GAAAGGCCCGTACGTTGCA 60.962 57.895 23.07 0.00 0.00 4.08
76 77 1.632948 GAGAAAGGCCCGTACGTTGC 61.633 60.000 15.21 15.76 0.00 4.17
77 78 0.037605 AGAGAAAGGCCCGTACGTTG 60.038 55.000 15.21 6.09 0.00 4.10
78 79 1.475682 CTAGAGAAAGGCCCGTACGTT 59.524 52.381 15.21 0.56 0.00 3.99
79 80 1.101331 CTAGAGAAAGGCCCGTACGT 58.899 55.000 15.21 0.00 0.00 3.57
80 81 1.101331 ACTAGAGAAAGGCCCGTACG 58.899 55.000 8.69 8.69 0.00 3.67
81 82 3.286353 ACTACTAGAGAAAGGCCCGTAC 58.714 50.000 0.00 0.00 0.00 3.67
82 83 3.659183 ACTACTAGAGAAAGGCCCGTA 57.341 47.619 0.00 0.00 0.00 4.02
83 84 2.528673 ACTACTAGAGAAAGGCCCGT 57.471 50.000 0.00 0.00 0.00 5.28
84 85 4.996788 TTTACTACTAGAGAAAGGCCCG 57.003 45.455 0.00 0.00 0.00 6.13
85 86 6.651086 ACATTTTACTACTAGAGAAAGGCCC 58.349 40.000 0.00 0.00 0.00 5.80
86 87 9.662947 TTTACATTTTACTACTAGAGAAAGGCC 57.337 33.333 0.00 0.00 0.00 5.19
139 140 8.703336 GTTGGATTTGTATTTGAAAGAGCTTTC 58.297 33.333 14.42 14.42 46.71 2.62
140 141 8.203485 TGTTGGATTTGTATTTGAAAGAGCTTT 58.797 29.630 0.00 0.00 35.14 3.51
141 142 7.725251 TGTTGGATTTGTATTTGAAAGAGCTT 58.275 30.769 0.00 0.00 0.00 3.74
142 143 7.014615 ACTGTTGGATTTGTATTTGAAAGAGCT 59.985 33.333 0.00 0.00 0.00 4.09
143 144 7.115378 CACTGTTGGATTTGTATTTGAAAGAGC 59.885 37.037 0.00 0.00 0.00 4.09
144 145 8.137437 ACACTGTTGGATTTGTATTTGAAAGAG 58.863 33.333 0.00 0.00 0.00 2.85
145 146 8.006298 ACACTGTTGGATTTGTATTTGAAAGA 57.994 30.769 0.00 0.00 0.00 2.52
146 147 9.180678 GTACACTGTTGGATTTGTATTTGAAAG 57.819 33.333 0.00 0.00 0.00 2.62
147 148 8.908903 AGTACACTGTTGGATTTGTATTTGAAA 58.091 29.630 0.00 0.00 0.00 2.69
148 149 8.458573 AGTACACTGTTGGATTTGTATTTGAA 57.541 30.769 0.00 0.00 0.00 2.69
149 150 8.458573 AAGTACACTGTTGGATTTGTATTTGA 57.541 30.769 0.00 0.00 0.00 2.69
150 151 9.528018 AAAAGTACACTGTTGGATTTGTATTTG 57.472 29.630 0.00 0.00 28.35 2.32
152 153 9.528018 CAAAAAGTACACTGTTGGATTTGTATT 57.472 29.630 0.00 0.00 0.00 1.89
153 154 8.691797 ACAAAAAGTACACTGTTGGATTTGTAT 58.308 29.630 11.21 0.00 36.89 2.29
154 155 8.057536 ACAAAAAGTACACTGTTGGATTTGTA 57.942 30.769 11.21 0.00 36.89 2.41
155 156 6.930731 ACAAAAAGTACACTGTTGGATTTGT 58.069 32.000 0.00 0.00 34.64 2.83
156 157 7.167468 GCTACAAAAAGTACACTGTTGGATTTG 59.833 37.037 0.00 0.00 0.00 2.32
157 158 7.147983 TGCTACAAAAAGTACACTGTTGGATTT 60.148 33.333 0.00 0.00 0.00 2.17
158 159 6.320164 TGCTACAAAAAGTACACTGTTGGATT 59.680 34.615 0.00 0.00 0.00 3.01
159 160 5.825679 TGCTACAAAAAGTACACTGTTGGAT 59.174 36.000 0.00 0.00 0.00 3.41
160 161 5.065474 GTGCTACAAAAAGTACACTGTTGGA 59.935 40.000 0.00 2.44 34.62 3.53
161 162 5.163703 TGTGCTACAAAAAGTACACTGTTGG 60.164 40.000 0.00 0.00 37.20 3.77
162 163 5.874831 TGTGCTACAAAAAGTACACTGTTG 58.125 37.500 0.00 0.00 37.20 3.33
163 164 6.693315 ATGTGCTACAAAAAGTACACTGTT 57.307 33.333 0.00 0.00 43.48 3.16
164 165 7.119262 GGATATGTGCTACAAAAAGTACACTGT 59.881 37.037 0.00 0.00 43.48 3.55
165 166 7.334421 AGGATATGTGCTACAAAAAGTACACTG 59.666 37.037 0.00 0.00 43.48 3.66
166 167 7.394816 AGGATATGTGCTACAAAAAGTACACT 58.605 34.615 0.00 0.00 43.48 3.55
167 168 7.611213 AGGATATGTGCTACAAAAAGTACAC 57.389 36.000 0.00 0.00 43.48 2.90
168 169 9.542462 GATAGGATATGTGCTACAAAAAGTACA 57.458 33.333 0.00 0.00 44.54 2.90
169 170 9.765795 AGATAGGATATGTGCTACAAAAAGTAC 57.234 33.333 0.00 0.00 30.59 2.73
171 172 9.686683 AAAGATAGGATATGTGCTACAAAAAGT 57.313 29.630 0.00 0.00 30.59 2.66
200 201 9.123902 CCAACCTTTGATCATTCATATGACTAA 57.876 33.333 4.48 0.00 43.29 2.24
201 202 7.229306 GCCAACCTTTGATCATTCATATGACTA 59.771 37.037 4.48 0.00 43.29 2.59
202 203 6.040166 GCCAACCTTTGATCATTCATATGACT 59.960 38.462 4.48 0.00 43.29 3.41
203 204 6.040166 AGCCAACCTTTGATCATTCATATGAC 59.960 38.462 4.48 0.00 43.29 3.06
204 205 6.131264 AGCCAACCTTTGATCATTCATATGA 58.869 36.000 0.00 0.00 44.52 2.15
205 206 6.040054 TGAGCCAACCTTTGATCATTCATATG 59.960 38.462 0.00 0.00 0.00 1.78
206 207 6.131264 TGAGCCAACCTTTGATCATTCATAT 58.869 36.000 0.00 0.00 0.00 1.78
207 208 5.508567 TGAGCCAACCTTTGATCATTCATA 58.491 37.500 0.00 0.00 0.00 2.15
208 209 4.346730 TGAGCCAACCTTTGATCATTCAT 58.653 39.130 0.00 0.00 0.00 2.57
209 210 3.765381 TGAGCCAACCTTTGATCATTCA 58.235 40.909 0.00 0.00 0.00 2.57
210 211 4.789012 TTGAGCCAACCTTTGATCATTC 57.211 40.909 0.00 0.00 0.00 2.67
211 212 5.549742 TTTTGAGCCAACCTTTGATCATT 57.450 34.783 0.00 0.00 0.00 2.57
212 213 5.750352 ATTTTGAGCCAACCTTTGATCAT 57.250 34.783 0.00 0.00 0.00 2.45
213 214 5.774690 AGTATTTTGAGCCAACCTTTGATCA 59.225 36.000 0.00 0.00 0.00 2.92
214 215 6.272822 AGTATTTTGAGCCAACCTTTGATC 57.727 37.500 0.00 0.00 0.00 2.92
215 216 6.378280 CCTAGTATTTTGAGCCAACCTTTGAT 59.622 38.462 0.00 0.00 0.00 2.57
216 217 5.710099 CCTAGTATTTTGAGCCAACCTTTGA 59.290 40.000 0.00 0.00 0.00 2.69
217 218 5.105756 CCCTAGTATTTTGAGCCAACCTTTG 60.106 44.000 0.00 0.00 0.00 2.77
218 219 5.016831 CCCTAGTATTTTGAGCCAACCTTT 58.983 41.667 0.00 0.00 0.00 3.11
219 220 4.291249 TCCCTAGTATTTTGAGCCAACCTT 59.709 41.667 0.00 0.00 0.00 3.50
220 221 3.850173 TCCCTAGTATTTTGAGCCAACCT 59.150 43.478 0.00 0.00 0.00 3.50
221 222 4.200092 CTCCCTAGTATTTTGAGCCAACC 58.800 47.826 0.00 0.00 0.00 3.77
222 223 3.628032 GCTCCCTAGTATTTTGAGCCAAC 59.372 47.826 0.00 0.00 41.95 3.77
223 224 3.265737 TGCTCCCTAGTATTTTGAGCCAA 59.734 43.478 7.28 0.00 46.02 4.52
224 225 2.843730 TGCTCCCTAGTATTTTGAGCCA 59.156 45.455 7.28 0.00 46.02 4.75
225 226 3.560636 TGCTCCCTAGTATTTTGAGCC 57.439 47.619 7.28 0.00 46.02 4.70
226 227 5.859495 AGTATGCTCCCTAGTATTTTGAGC 58.141 41.667 0.00 0.00 46.60 4.26
227 228 9.262358 GTTTAGTATGCTCCCTAGTATTTTGAG 57.738 37.037 0.00 0.00 29.99 3.02
228 229 8.208903 GGTTTAGTATGCTCCCTAGTATTTTGA 58.791 37.037 0.00 0.00 29.99 2.69
229 230 7.444487 GGGTTTAGTATGCTCCCTAGTATTTTG 59.556 40.741 0.00 0.00 35.63 2.44
230 231 7.515586 GGGTTTAGTATGCTCCCTAGTATTTT 58.484 38.462 0.00 0.00 35.63 1.82
231 232 6.239515 CGGGTTTAGTATGCTCCCTAGTATTT 60.240 42.308 4.82 0.00 36.30 1.40
232 233 5.245526 CGGGTTTAGTATGCTCCCTAGTATT 59.754 44.000 4.82 0.00 36.30 1.89
233 234 4.771054 CGGGTTTAGTATGCTCCCTAGTAT 59.229 45.833 4.82 0.00 36.30 2.12
234 235 4.147321 CGGGTTTAGTATGCTCCCTAGTA 58.853 47.826 4.82 0.00 36.30 1.82
235 236 2.963782 CGGGTTTAGTATGCTCCCTAGT 59.036 50.000 4.82 0.00 36.30 2.57
236 237 2.299297 CCGGGTTTAGTATGCTCCCTAG 59.701 54.545 0.00 0.00 36.30 3.02
237 238 2.091166 TCCGGGTTTAGTATGCTCCCTA 60.091 50.000 0.00 0.00 36.30 3.53
238 239 1.129058 CCGGGTTTAGTATGCTCCCT 58.871 55.000 0.00 0.00 36.30 4.20
239 240 1.125633 TCCGGGTTTAGTATGCTCCC 58.874 55.000 0.00 0.00 35.22 4.30
240 241 1.537562 CGTCCGGGTTTAGTATGCTCC 60.538 57.143 0.00 0.00 0.00 4.70
241 242 1.537562 CCGTCCGGGTTTAGTATGCTC 60.538 57.143 0.00 0.00 0.00 4.26
242 243 0.462789 CCGTCCGGGTTTAGTATGCT 59.537 55.000 0.00 0.00 0.00 3.79
243 244 0.461135 TCCGTCCGGGTTTAGTATGC 59.539 55.000 0.00 0.00 37.00 3.14
244 245 1.068127 CCTCCGTCCGGGTTTAGTATG 59.932 57.143 0.00 0.00 37.00 2.39
245 246 1.342374 ACCTCCGTCCGGGTTTAGTAT 60.342 52.381 0.00 0.00 37.00 2.12
246 247 0.039618 ACCTCCGTCCGGGTTTAGTA 59.960 55.000 0.00 0.00 37.00 1.82
247 248 0.039618 TACCTCCGTCCGGGTTTAGT 59.960 55.000 0.00 0.00 37.07 2.24
248 249 0.743097 CTACCTCCGTCCGGGTTTAG 59.257 60.000 0.00 0.68 37.07 1.85
249 250 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.000 0.00 0.00 37.07 2.01
250 251 0.039618 TACTACCTCCGTCCGGGTTT 59.960 55.000 0.00 0.00 37.07 3.27
251 252 0.394899 CTACTACCTCCGTCCGGGTT 60.395 60.000 0.00 0.00 37.07 4.11
252 253 1.225704 CTACTACCTCCGTCCGGGT 59.774 63.158 0.00 0.00 39.40 5.28
253 254 0.469917 TACTACTACCTCCGTCCGGG 59.530 60.000 0.00 0.00 35.59 5.73
254 255 2.149578 CATACTACTACCTCCGTCCGG 58.850 57.143 0.00 0.00 0.00 5.14
255 256 3.117491 TCATACTACTACCTCCGTCCG 57.883 52.381 0.00 0.00 0.00 4.79
256 257 4.459330 AGTTCATACTACTACCTCCGTCC 58.541 47.826 0.00 0.00 31.21 4.79
257 258 5.367302 AGAGTTCATACTACTACCTCCGTC 58.633 45.833 0.00 0.00 33.84 4.79
258 259 5.370875 AGAGTTCATACTACTACCTCCGT 57.629 43.478 0.00 0.00 33.84 4.69
259 260 5.239087 GGAAGAGTTCATACTACTACCTCCG 59.761 48.000 0.00 0.00 33.84 4.63
260 261 6.127793 TGGAAGAGTTCATACTACTACCTCC 58.872 44.000 0.00 0.00 33.84 4.30
261 262 7.653647 CATGGAAGAGTTCATACTACTACCTC 58.346 42.308 0.00 0.00 33.84 3.85
262 263 6.041069 GCATGGAAGAGTTCATACTACTACCT 59.959 42.308 0.00 0.00 33.84 3.08
263 264 6.041069 AGCATGGAAGAGTTCATACTACTACC 59.959 42.308 0.00 0.00 33.84 3.18
264 265 7.045126 AGCATGGAAGAGTTCATACTACTAC 57.955 40.000 0.00 0.00 33.84 2.73
265 266 8.797438 CATAGCATGGAAGAGTTCATACTACTA 58.203 37.037 0.00 0.00 33.84 1.82
266 267 7.288852 ACATAGCATGGAAGAGTTCATACTACT 59.711 37.037 0.00 0.00 32.01 2.57
280 281 4.661222 TGGAGTTCAAACATAGCATGGAA 58.339 39.130 0.00 0.00 33.60 3.53
281 282 4.263462 ACTGGAGTTCAAACATAGCATGGA 60.263 41.667 0.00 0.00 33.60 3.41
282 283 4.012374 ACTGGAGTTCAAACATAGCATGG 58.988 43.478 0.00 0.00 33.60 3.66
283 284 4.696877 TCACTGGAGTTCAAACATAGCATG 59.303 41.667 0.00 0.00 0.00 4.06
319 320 6.803320 CGGCATATTCAAATCAATAATTCGCT 59.197 34.615 0.00 0.00 0.00 4.93
325 326 7.747888 CCGATACGGCATATTCAAATCAATAA 58.252 34.615 0.00 0.00 41.17 1.40
328 329 5.605564 CCGATACGGCATATTCAAATCAA 57.394 39.130 0.00 0.00 41.17 2.57
353 354 4.681942 CGCTTAACCAGAATAGATCCTTCG 59.318 45.833 0.00 0.00 0.00 3.79
365 366 0.892755 ATGTCGGACGCTTAACCAGA 59.107 50.000 3.34 0.00 0.00 3.86
369 370 1.278238 CAGGATGTCGGACGCTTAAC 58.722 55.000 3.34 0.00 0.00 2.01
402 403 5.224313 CGCAAAACTCATTTACGGTATTTCG 59.776 40.000 0.00 0.00 0.00 3.46
405 406 5.866335 TCGCAAAACTCATTTACGGTATT 57.134 34.783 0.00 0.00 31.65 1.89
532 533 2.409948 AAGCTGGTCTGGCAAGATAC 57.590 50.000 0.00 0.00 34.13 2.24
533 534 2.305635 TGAAAGCTGGTCTGGCAAGATA 59.694 45.455 0.00 0.00 34.13 1.98
534 535 1.074405 TGAAAGCTGGTCTGGCAAGAT 59.926 47.619 0.00 0.00 34.13 2.40
535 536 0.473755 TGAAAGCTGGTCTGGCAAGA 59.526 50.000 0.00 0.00 0.00 3.02
536 537 0.595095 GTGAAAGCTGGTCTGGCAAG 59.405 55.000 0.00 0.00 0.00 4.01
537 538 1.165907 CGTGAAAGCTGGTCTGGCAA 61.166 55.000 0.00 0.00 0.00 4.52
538 539 1.597854 CGTGAAAGCTGGTCTGGCA 60.598 57.895 0.00 0.00 0.00 4.92
539 540 0.320421 TACGTGAAAGCTGGTCTGGC 60.320 55.000 0.00 0.00 0.00 4.85
540 541 2.069273 CTTACGTGAAAGCTGGTCTGG 58.931 52.381 0.00 0.00 0.00 3.86
541 542 3.026630 TCTTACGTGAAAGCTGGTCTG 57.973 47.619 0.00 0.00 0.00 3.51
542 543 3.963428 ATCTTACGTGAAAGCTGGTCT 57.037 42.857 0.00 0.00 0.00 3.85
543 544 5.451828 GTAATCTTACGTGAAAGCTGGTC 57.548 43.478 0.00 0.00 0.00 4.02
567 568 5.239351 TGCTACATCTACGTAAAAGGCAAA 58.761 37.500 0.00 0.00 0.00 3.68
568 569 4.823157 TGCTACATCTACGTAAAAGGCAA 58.177 39.130 0.00 0.00 0.00 4.52
569 570 4.459390 TGCTACATCTACGTAAAAGGCA 57.541 40.909 0.00 0.47 0.00 4.75
572 573 5.220605 GGGCTTTGCTACATCTACGTAAAAG 60.221 44.000 0.00 2.45 0.00 2.27
573 574 4.632688 GGGCTTTGCTACATCTACGTAAAA 59.367 41.667 0.00 0.00 0.00 1.52
574 575 4.081309 AGGGCTTTGCTACATCTACGTAAA 60.081 41.667 0.00 0.00 0.00 2.01
575 576 3.449737 AGGGCTTTGCTACATCTACGTAA 59.550 43.478 0.00 0.00 0.00 3.18
576 577 3.028850 AGGGCTTTGCTACATCTACGTA 58.971 45.455 0.00 0.00 0.00 3.57
577 578 1.831736 AGGGCTTTGCTACATCTACGT 59.168 47.619 0.00 0.00 0.00 3.57
578 579 2.205074 CAGGGCTTTGCTACATCTACG 58.795 52.381 0.00 0.00 0.00 3.51
579 580 3.268023 ACAGGGCTTTGCTACATCTAC 57.732 47.619 0.00 0.00 0.00 2.59
580 581 3.388024 CCTACAGGGCTTTGCTACATCTA 59.612 47.826 0.00 0.00 0.00 1.98
581 582 2.171448 CCTACAGGGCTTTGCTACATCT 59.829 50.000 0.00 0.00 0.00 2.90
582 583 2.170607 TCCTACAGGGCTTTGCTACATC 59.829 50.000 0.00 0.00 35.41 3.06
583 584 2.196595 TCCTACAGGGCTTTGCTACAT 58.803 47.619 0.00 0.00 35.41 2.29
585 586 3.283259 AATCCTACAGGGCTTTGCTAC 57.717 47.619 0.00 0.00 35.41 3.58
586 587 5.376625 CAATAATCCTACAGGGCTTTGCTA 58.623 41.667 0.00 0.00 35.41 3.49
588 589 3.243535 GCAATAATCCTACAGGGCTTTGC 60.244 47.826 0.00 3.52 33.63 3.68
589 590 4.210331 AGCAATAATCCTACAGGGCTTTG 58.790 43.478 0.00 0.00 35.41 2.77
590 591 4.526438 AGCAATAATCCTACAGGGCTTT 57.474 40.909 0.00 0.00 35.41 3.51
591 592 4.412199 TGTAGCAATAATCCTACAGGGCTT 59.588 41.667 0.00 0.00 39.05 4.35
592 593 3.973973 TGTAGCAATAATCCTACAGGGCT 59.026 43.478 0.00 0.00 39.05 5.19
593 594 4.065789 GTGTAGCAATAATCCTACAGGGC 58.934 47.826 1.12 0.00 43.10 5.19
594 595 4.505039 GGGTGTAGCAATAATCCTACAGGG 60.505 50.000 1.12 0.00 43.10 4.45
597 598 4.719773 AGTGGGTGTAGCAATAATCCTACA 59.280 41.667 0.00 0.00 41.00 2.74
598 599 5.291905 AGTGGGTGTAGCAATAATCCTAC 57.708 43.478 0.00 0.00 35.60 3.18
599 600 4.347000 GGAGTGGGTGTAGCAATAATCCTA 59.653 45.833 0.00 0.00 0.00 2.94
600 601 3.136626 GGAGTGGGTGTAGCAATAATCCT 59.863 47.826 0.00 0.00 0.00 3.24
601 602 3.477530 GGAGTGGGTGTAGCAATAATCC 58.522 50.000 0.00 0.00 0.00 3.01
602 603 3.136626 AGGGAGTGGGTGTAGCAATAATC 59.863 47.826 0.00 0.00 0.00 1.75
603 604 3.123273 AGGGAGTGGGTGTAGCAATAAT 58.877 45.455 0.00 0.00 0.00 1.28
604 605 2.557869 AGGGAGTGGGTGTAGCAATAA 58.442 47.619 0.00 0.00 0.00 1.40
606 607 2.263895 TAGGGAGTGGGTGTAGCAAT 57.736 50.000 0.00 0.00 0.00 3.56
608 609 1.078159 TCTTAGGGAGTGGGTGTAGCA 59.922 52.381 0.00 0.00 0.00 3.49
610 611 4.903045 TTTTCTTAGGGAGTGGGTGTAG 57.097 45.455 0.00 0.00 0.00 2.74
691 692 1.348775 GGGGTGAGATCTGGGGAAGG 61.349 65.000 0.00 0.00 0.00 3.46
734 735 4.536687 CGGAGGCCGCGAATTTGC 62.537 66.667 8.23 7.68 41.17 3.68
773 774 2.528127 TGGGAGGCTCGGTTGGAA 60.528 61.111 8.69 0.00 0.00 3.53
886 1000 4.068599 GGTATTTAGAGCTTCAGATGGCC 58.931 47.826 0.00 0.00 0.00 5.36
930 1055 2.743718 CCGGAGAGCTGTGGTGTT 59.256 61.111 0.00 0.00 0.00 3.32
984 1111 2.755876 ATGGCGTGCGAGAGAGGA 60.756 61.111 0.00 0.00 0.00 3.71
1245 6224 1.801178 CGGCTCTTCTTGTTGTCCTTC 59.199 52.381 0.00 0.00 0.00 3.46
1365 6344 0.539986 GGAGAAGCACCGGGTTGATA 59.460 55.000 6.32 0.00 34.25 2.15
1380 6359 2.646175 CGCCGTCTTCTTGGGGAGA 61.646 63.158 0.00 0.00 40.41 3.71
1490 6469 4.433615 CACACAGCCTAAACGATACAGAT 58.566 43.478 0.00 0.00 0.00 2.90
1537 6516 3.034635 AGACAGAACACACCTTCACTCT 58.965 45.455 0.00 0.00 0.00 3.24
1546 6525 3.717707 TCAACAGCTAGACAGAACACAC 58.282 45.455 0.00 0.00 0.00 3.82
1547 6526 4.202253 ACATCAACAGCTAGACAGAACACA 60.202 41.667 0.00 0.00 0.00 3.72
1561 6540 5.065859 TGAACAACACAAGGTACATCAACAG 59.934 40.000 0.00 0.00 0.00 3.16
1574 6553 5.359292 TCTTCCATGAACATGAACAACACAA 59.641 36.000 15.21 0.00 41.20 3.33
1643 6625 0.957395 ATCTCCAGTGCAACAAGGCG 60.957 55.000 0.00 0.00 41.43 5.52
1645 6627 2.886523 TCAAATCTCCAGTGCAACAAGG 59.113 45.455 0.00 0.00 41.43 3.61
1646 6628 4.572985 TTCAAATCTCCAGTGCAACAAG 57.427 40.909 0.00 0.00 41.43 3.16
1648 6630 4.022935 GTGATTCAAATCTCCAGTGCAACA 60.023 41.667 4.50 0.00 36.28 3.33
1649 6631 4.217118 AGTGATTCAAATCTCCAGTGCAAC 59.783 41.667 4.50 0.00 36.39 4.17
1656 6638 4.183865 CGCTACAGTGATTCAAATCTCCA 58.816 43.478 0.00 0.00 36.39 3.86
1674 6656 0.953471 ACAGGCAACAATTCGCGCTA 60.953 50.000 5.56 0.00 41.41 4.26
1675 6657 2.260869 ACAGGCAACAATTCGCGCT 61.261 52.632 5.56 0.00 41.41 5.92
1682 6664 1.528076 TGGCGACACAGGCAACAAT 60.528 52.632 0.00 0.00 43.90 2.71
1699 6681 7.168972 TCTGTAAAAGATCGTTTGCCAATTTTG 59.831 33.333 15.73 2.58 0.00 2.44
1700 6682 7.169140 GTCTGTAAAAGATCGTTTGCCAATTTT 59.831 33.333 15.73 3.37 37.23 1.82
1715 6697 2.400399 CGAACTGCCGTCTGTAAAAGA 58.600 47.619 0.00 0.00 0.00 2.52
1716 6698 1.459592 CCGAACTGCCGTCTGTAAAAG 59.540 52.381 0.00 0.00 0.00 2.27
1763 6748 7.174946 ACTGCTTTCTCGGAGAAAATAATTGAA 59.825 33.333 27.69 13.07 42.95 2.69
1766 6751 8.561738 TTACTGCTTTCTCGGAGAAAATAATT 57.438 30.769 27.69 16.23 42.95 1.40
1767 6752 8.451748 GTTTACTGCTTTCTCGGAGAAAATAAT 58.548 33.333 27.69 18.16 42.95 1.28
1768 6753 7.660208 AGTTTACTGCTTTCTCGGAGAAAATAA 59.340 33.333 27.69 20.53 42.95 1.40
1769 6754 7.159372 AGTTTACTGCTTTCTCGGAGAAAATA 58.841 34.615 27.69 19.68 42.95 1.40
1775 6760 4.268884 GCATAGTTTACTGCTTTCTCGGAG 59.731 45.833 0.00 0.00 35.49 4.63
1777 6762 3.932710 TGCATAGTTTACTGCTTTCTCGG 59.067 43.478 0.00 0.00 39.16 4.63
1778 6763 4.388773 TGTGCATAGTTTACTGCTTTCTCG 59.611 41.667 0.00 0.00 39.16 4.04
1779 6764 5.179368 TGTGTGCATAGTTTACTGCTTTCTC 59.821 40.000 0.00 0.00 39.16 2.87
1780 6765 5.063204 TGTGTGCATAGTTTACTGCTTTCT 58.937 37.500 0.00 0.00 39.16 2.52
1783 6768 4.023193 GGTTGTGTGCATAGTTTACTGCTT 60.023 41.667 0.00 0.00 39.16 3.91
1802 6800 2.163818 TTCAGCTAACTGTCCGGTTG 57.836 50.000 0.00 0.00 44.77 3.77
1805 6803 2.420022 CCAAATTCAGCTAACTGTCCGG 59.580 50.000 0.00 0.00 44.77 5.14
1814 6813 9.747898 TTTTACCTTTAGATCCAAATTCAGCTA 57.252 29.630 0.00 0.00 0.00 3.32
1847 6848 5.534654 TCCCAACAGAATTTCATCGAAAGTT 59.465 36.000 0.00 0.00 34.92 2.66
1854 6855 7.874528 ACTTTCAATTCCCAACAGAATTTCATC 59.125 33.333 0.00 0.00 42.46 2.92
1863 6864 3.891366 ACAGGACTTTCAATTCCCAACAG 59.109 43.478 0.00 0.00 31.51 3.16
1892 6896 2.953605 GCACAGCGCACGATGTCAA 61.954 57.895 11.42 0.00 43.34 3.18
1917 6921 3.066291 TCGTTGTGGTGGATGCTATTT 57.934 42.857 0.00 0.00 0.00 1.40
1926 6930 0.727970 TGAAACGTTCGTTGTGGTGG 59.272 50.000 11.24 0.00 0.00 4.61
1941 6946 0.179094 ACGACTTCTGTGGCGTGAAA 60.179 50.000 3.87 0.00 35.44 2.69
1960 6965 1.891811 CAGAGTCCAGCTGAGACAAGA 59.108 52.381 26.77 10.22 36.68 3.02
1969 6974 0.042431 AGGGATCACAGAGTCCAGCT 59.958 55.000 0.00 0.00 36.19 4.24
1977 6982 2.978978 TGGAAACTTCAGGGATCACAGA 59.021 45.455 0.00 0.00 0.00 3.41
1985 6990 0.321653 CCTCCGTGGAAACTTCAGGG 60.322 60.000 0.00 0.00 40.41 4.45
1988 6993 0.250295 CTGCCTCCGTGGAAACTTCA 60.250 55.000 0.00 0.00 38.35 3.02
1996 7001 1.142748 GAGTCATCTGCCTCCGTGG 59.857 63.158 0.00 0.00 39.35 4.94
2009 7014 1.275291 CTCAAGTAAAGCCCGGAGTCA 59.725 52.381 0.73 0.00 0.00 3.41
2077 7082 1.819632 CCGGTAGTGAAGGGCATGC 60.820 63.158 9.90 9.90 0.00 4.06
2100 7105 6.431234 ACAGAGATTTGCTAGTTCGGAAATTT 59.569 34.615 0.00 0.00 35.48 1.82
2129 7161 6.477688 CACTTATTTCCGAACGGAGCTAATAA 59.522 38.462 20.39 20.39 46.06 1.40
2167 7255 1.281656 GGGGTTGAGCGTTTTGACG 59.718 57.895 0.00 0.00 0.00 4.35
2175 7263 1.890041 TTCACAACGGGGTTGAGCG 60.890 57.895 14.79 3.86 45.28 5.03
2250 7338 0.694771 TGCAGGAGATGAAACAGCCT 59.305 50.000 0.00 0.00 0.00 4.58
2284 7373 1.896220 TGTGGCGAAGAAGAGCAAAT 58.104 45.000 0.00 0.00 34.54 2.32
2334 7423 2.579410 TCCTACAAACCAAAGGAGGC 57.421 50.000 0.00 0.00 34.46 4.70
2336 7425 6.816136 ACAAAAATCCTACAAACCAAAGGAG 58.184 36.000 0.00 0.00 42.53 3.69
2337 7426 6.800072 ACAAAAATCCTACAAACCAAAGGA 57.200 33.333 0.00 0.00 43.38 3.36
2338 7427 7.014808 TCCTACAAAAATCCTACAAACCAAAGG 59.985 37.037 0.00 0.00 0.00 3.11
2339 7428 7.947282 TCCTACAAAAATCCTACAAACCAAAG 58.053 34.615 0.00 0.00 0.00 2.77
2340 7429 7.899648 TCCTACAAAAATCCTACAAACCAAA 57.100 32.000 0.00 0.00 0.00 3.28
2341 7430 7.899648 TTCCTACAAAAATCCTACAAACCAA 57.100 32.000 0.00 0.00 0.00 3.67
2342 7431 8.485578 AATTCCTACAAAAATCCTACAAACCA 57.514 30.769 0.00 0.00 0.00 3.67
2343 7432 8.803235 AGAATTCCTACAAAAATCCTACAAACC 58.197 33.333 0.65 0.00 0.00 3.27
2359 7448 9.825109 GCAAATCCTATCCTATAGAATTCCTAC 57.175 37.037 0.00 0.00 0.00 3.18
2360 7449 9.560860 TGCAAATCCTATCCTATAGAATTCCTA 57.439 33.333 0.00 0.00 0.00 2.94
2361 7450 8.454859 TGCAAATCCTATCCTATAGAATTCCT 57.545 34.615 0.00 0.00 0.00 3.36
2362 7451 9.520515 TTTGCAAATCCTATCCTATAGAATTCC 57.479 33.333 8.05 0.00 0.00 3.01
2364 7453 9.525826 CCTTTGCAAATCCTATCCTATAGAATT 57.474 33.333 13.23 0.00 0.00 2.17
2365 7454 8.894592 TCCTTTGCAAATCCTATCCTATAGAAT 58.105 33.333 13.23 0.00 0.00 2.40
2366 7455 8.275187 TCCTTTGCAAATCCTATCCTATAGAA 57.725 34.615 13.23 0.00 0.00 2.10
2367 7456 7.872061 TCCTTTGCAAATCCTATCCTATAGA 57.128 36.000 13.23 0.00 0.00 1.98
2368 7457 8.924511 TTTCCTTTGCAAATCCTATCCTATAG 57.075 34.615 13.23 0.00 0.00 1.31
2369 7458 9.707957 TTTTTCCTTTGCAAATCCTATCCTATA 57.292 29.630 13.23 0.00 0.00 1.31
2370 7459 8.608185 TTTTTCCTTTGCAAATCCTATCCTAT 57.392 30.769 13.23 0.00 0.00 2.57
2372 7461 6.933514 TTTTTCCTTTGCAAATCCTATCCT 57.066 33.333 13.23 0.00 0.00 3.24
2395 7484 5.714333 ACAAACCAAAGGGCTTCAAATTTTT 59.286 32.000 0.00 0.00 37.90 1.94
2396 7485 5.260424 ACAAACCAAAGGGCTTCAAATTTT 58.740 33.333 0.00 0.00 37.90 1.82
2397 7486 4.854173 ACAAACCAAAGGGCTTCAAATTT 58.146 34.783 0.00 0.00 37.90 1.82
2398 7487 4.502105 ACAAACCAAAGGGCTTCAAATT 57.498 36.364 0.00 0.00 37.90 1.82
2399 7488 4.040339 CCTACAAACCAAAGGGCTTCAAAT 59.960 41.667 0.00 0.00 37.90 2.32
2400 7489 3.386402 CCTACAAACCAAAGGGCTTCAAA 59.614 43.478 0.00 0.00 37.90 2.69
2401 7490 2.962421 CCTACAAACCAAAGGGCTTCAA 59.038 45.455 0.00 0.00 37.90 2.69
2402 7491 2.175931 TCCTACAAACCAAAGGGCTTCA 59.824 45.455 0.00 0.00 37.90 3.02
2403 7492 2.871453 TCCTACAAACCAAAGGGCTTC 58.129 47.619 0.00 0.00 37.90 3.86
2404 7493 3.322191 TTCCTACAAACCAAAGGGCTT 57.678 42.857 0.00 0.00 37.90 4.35
2405 7494 3.165071 CATTCCTACAAACCAAAGGGCT 58.835 45.455 0.00 0.00 37.90 5.19
2406 7495 2.233676 CCATTCCTACAAACCAAAGGGC 59.766 50.000 0.00 0.00 37.90 5.19
2407 7496 3.773560 TCCATTCCTACAAACCAAAGGG 58.226 45.455 0.00 0.00 41.29 3.95
2408 7497 5.965922 GAATCCATTCCTACAAACCAAAGG 58.034 41.667 0.00 0.00 0.00 3.11
2437 7526 9.883142 GAAAGATTGATTCCTATCCTACATAGG 57.117 37.037 0.00 0.00 45.02 2.57
2440 7529 7.875041 CGTGAAAGATTGATTCCTATCCTACAT 59.125 37.037 0.00 0.00 0.00 2.29
2441 7530 7.147724 ACGTGAAAGATTGATTCCTATCCTACA 60.148 37.037 0.00 0.00 0.00 2.74
2442 7531 7.210873 ACGTGAAAGATTGATTCCTATCCTAC 58.789 38.462 0.00 0.00 0.00 3.18
2443 7532 7.361457 ACGTGAAAGATTGATTCCTATCCTA 57.639 36.000 0.00 0.00 0.00 2.94
2444 7533 6.240549 ACGTGAAAGATTGATTCCTATCCT 57.759 37.500 0.00 0.00 0.00 3.24
2445 7534 6.927294 AACGTGAAAGATTGATTCCTATCC 57.073 37.500 0.00 0.00 0.00 2.59
2446 7535 7.698130 CCAAAACGTGAAAGATTGATTCCTATC 59.302 37.037 0.00 0.00 0.00 2.08
2447 7536 7.393234 TCCAAAACGTGAAAGATTGATTCCTAT 59.607 33.333 0.00 0.00 0.00 2.57
2448 7537 6.712998 TCCAAAACGTGAAAGATTGATTCCTA 59.287 34.615 0.00 0.00 0.00 2.94
2449 7538 5.534654 TCCAAAACGTGAAAGATTGATTCCT 59.465 36.000 0.00 0.00 0.00 3.36
2450 7539 5.768317 TCCAAAACGTGAAAGATTGATTCC 58.232 37.500 0.00 0.00 0.00 3.01
2451 7540 5.858581 CCTCCAAAACGTGAAAGATTGATTC 59.141 40.000 0.00 0.00 0.00 2.52
2452 7541 5.278957 CCCTCCAAAACGTGAAAGATTGATT 60.279 40.000 0.00 0.00 0.00 2.57
2453 7542 4.218417 CCCTCCAAAACGTGAAAGATTGAT 59.782 41.667 0.00 0.00 0.00 2.57
2454 7543 3.568007 CCCTCCAAAACGTGAAAGATTGA 59.432 43.478 0.00 0.00 0.00 2.57
2455 7544 3.568007 TCCCTCCAAAACGTGAAAGATTG 59.432 43.478 0.00 0.00 0.00 2.67
2456 7545 3.827722 TCCCTCCAAAACGTGAAAGATT 58.172 40.909 0.00 0.00 0.00 2.40
2457 7546 3.502123 TCCCTCCAAAACGTGAAAGAT 57.498 42.857 0.00 0.00 0.00 2.40
2458 7547 3.284793 TTCCCTCCAAAACGTGAAAGA 57.715 42.857 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.