AutoCloner

Multiple sequence alignment - TraesCS5B01G243200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G243200	chr5B	100.000	3011	0	0	1	3011	423364264	423361254	0.000000e+00	5561.0
1	TraesCS5B01G243200	chr5D	94.680	2331	64	21	656	2975	358223878	358221597	0.000000e+00	3563.0
2	TraesCS5B01G243200	chr5D	85.090	664	60	11	3	655	506147676	506147041	2.530000e-180	641.0
3	TraesCS5B01G243200	chr5D	90.256	195	19	0	465	659	416031955	416032149	3.850000e-64	255.0
4	TraesCS5B01G243200	chr5A	92.494	1985	54	23	660	2624	459002236	459000327	0.000000e+00	2752.0
5	TraesCS5B01G243200	chr6B	95.566	654	29	0	2	655	192923769	192924422	0.000000e+00	1048.0
6	TraesCS5B01G243200	chr6B	89.444	180	19	0	3	182	173661920	173662099	8.400000e-56	228.0
7	TraesCS5B01G243200	chr6B	73.593	231	48	10	1275	1501	704890693	704890914	3.220000e-10	76.8
8	TraesCS5B01G243200	chr6A	96.750	523	17	0	133	655	12047385	12046863	0.000000e+00	872.0
9	TraesCS5B01G243200	chr6A	93.233	133	9	0	2	134	12047678	12047546	2.370000e-46	196.0
10	TraesCS5B01G243200	chr7A	92.748	524	37	1	133	656	591882697	591882175	0.000000e+00	756.0
11	TraesCS5B01G243200	chr7A	97.561	41	1	0	1275	1315	195217967	195217927	1.500000e-08	71.3
12	TraesCS5B01G243200	chr1D	86.140	671	65	15	3	659	394731859	394732515	0.000000e+00	699.0
13	TraesCS5B01G243200	chr1D	94.585	277	14	1	1	277	271229044	271228769	7.710000e-116	427.0
14	TraesCS5B01G243200	chr1D	92.593	243	6	2	416	658	271228597	271228367	3.720000e-89	339.0
15	TraesCS5B01G243200	chr1D	97.561	82	2	0	349	430	271228690	271228609	1.130000e-29	141.0
16	TraesCS5B01G243200	chr1D	97.143	35	1	0	302	336	271228768	271228734	3.240000e-05	60.2
17	TraesCS5B01G243200	chr6D	94.286	455	24	1	1	453	388402627	388403081	0.000000e+00	695.0
18	TraesCS5B01G243200	chr6D	95.500	200	9	0	454	653	388405370	388405569	1.350000e-83	320.0
19	TraesCS5B01G243200	chr6D	72.787	305	57	16	1275	1575	462422998	462423280	2.490000e-11	80.5
20	TraesCS5B01G243200	chrUn	91.053	190	17	0	470	659	121735313	121735124	1.070000e-64	257.0
21	TraesCS5B01G243200	chr1A	88.177	203	23	1	466	667	456182058	456181856	1.080000e-59	241.0
22	TraesCS5B01G243200	chr1B	86.161	224	27	3	443	666	91516942	91517161	3.880000e-59	239.0
23	TraesCS5B01G243200	chr7D	97.561	41	1	0	1275	1315	188874387	188874427	1.500000e-08	71.3
24	TraesCS5B01G243200	chr7B	97.436	39	1	0	1277	1315	333129533	333129571	1.940000e-07	67.6
25	TraesCS5B01G243200	chr2D	100.000	31	0	0	1119	1149	8486608	8486638	1.170000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G243200	chr5B	423361254	423364264	3010	True	5561.0	5561	100.0000	1	3011	1	chr5B.!!$R1	3010
1	TraesCS5B01G243200	chr5D	358221597	358223878	2281	True	3563.0	3563	94.6800	656	2975	1	chr5D.!!$R1	2319
2	TraesCS5B01G243200	chr5D	506147041	506147676	635	True	641.0	641	85.0900	3	655	1	chr5D.!!$R2	652
3	TraesCS5B01G243200	chr5A	459000327	459002236	1909	True	2752.0	2752	92.4940	660	2624	1	chr5A.!!$R1	1964
4	TraesCS5B01G243200	chr6B	192923769	192924422	653	False	1048.0	1048	95.5660	2	655	1	chr6B.!!$F2	653
5	TraesCS5B01G243200	chr6A	12046863	12047678	815	True	534.0	872	94.9915	2	655	2	chr6A.!!$R1	653
6	TraesCS5B01G243200	chr7A	591882175	591882697	522	True	756.0	756	92.7480	133	656	1	chr7A.!!$R2	523
7	TraesCS5B01G243200	chr1D	394731859	394732515	656	False	699.0	699	86.1400	3	659	1	chr1D.!!$F1	656
8	TraesCS5B01G243200	chr1D	271228367	271229044	677	True	241.8	427	95.4705	1	658	4	chr1D.!!$R1	657
9	TraesCS5B01G243200	chr6D	388402627	388405569	2942	False	507.5	695	94.8930	1	653	2	chr6D.!!$F2	652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
111	115	0.390998	GACCTGTGAGGAAGAGCTGC	60.391	60.0	0.00	0.00	37.67	5.25	F
990	3527	0.737715	ATTCGCGACCAAGTGAGCTC	60.738	55.0	9.15	6.82	31.79	4.09	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1015	3552	1.153289	CCTCCTTGCTCATGTCCGG	60.153	63.158	0.0	0.0	0.0	5.14	R
2696	5260	0.037326	TCCTGTTCTGTTGGCTAGCG	60.037	55.000	9.0	0.0	0.0	4.26	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
111	115	0.390998	GACCTGTGAGGAAGAGCTGC	60.391	60.000	0.00	0.00	37.67	5.25
198	367	3.420839	AAACAAGTCTGTTCCTTTGCG	57.579	42.857	0.00	0.00	45.25	4.85
265	434	9.646427	TTGGGCTGAAAATTTAACACAATATAC	57.354	29.630	0.00	0.00	0.00	1.47
376	577	6.849588	TTCATATCGGTGAATGTGATCTTG	57.150	37.500	0.00	0.00	33.41	3.02
664	3189	2.050269	CCGGGTTGACTCACAGAGT	58.950	57.895	0.00	0.00	46.42	3.24
887	3424	3.768632	GACTAGCGTCGCCACTTG	58.231	61.111	14.86	0.00	0.00	3.16
888	3425	2.432628	ACTAGCGTCGCCACTTGC	60.433	61.111	14.86	0.00	0.00	4.01
889	3426	3.188786	CTAGCGTCGCCACTTGCC	61.189	66.667	14.86	0.00	36.24	4.52
933	3470	2.121506	ACCCCTTGCTCCCTCCAA	60.122	61.111	0.00	0.00	0.00	3.53
935	3472	2.045926	CCCTTGCTCCCTCCAACG	60.046	66.667	0.00	0.00	0.00	4.10
948	3485	3.434319	CAACGGCCGCATCTTGCT	61.434	61.111	28.58	0.00	42.25	3.91
990	3527	0.737715	ATTCGCGACCAAGTGAGCTC	60.738	55.000	9.15	6.82	31.79	4.09
995	3532	1.599576	GACCAAGTGAGCTCCCTCC	59.400	63.158	12.15	0.00	37.29	4.30
1015	3552	0.529378	CTCCATGTCCTTTGGCAAGC	59.471	55.000	0.00	0.00	34.06	4.01
1279	3819	3.009115	CCAAGAAGCGGAGGGGGA	61.009	66.667	0.00	0.00	0.00	4.81
1843	4383	4.008933	GTCAGCACCAGCCGGAGT	62.009	66.667	5.05	0.00	43.56	3.85
2032	4584	1.478510	CAGAGAGAATGTGTACGCCCT	59.521	52.381	3.51	0.00	0.00	5.19
2055	4607	0.183492	TACCAGATTGCCTGCATCCC	59.817	55.000	0.00	0.00	41.57	3.85
2221	4775	1.441515	GCTGCATGCACGTCACAAG	60.442	57.895	18.46	5.54	42.31	3.16
2222	4776	1.441515	CTGCATGCACGTCACAAGC	60.442	57.895	18.46	8.05	0.00	4.01
2223	4777	1.848932	CTGCATGCACGTCACAAGCT	61.849	55.000	18.46	0.00	0.00	3.74
2224	4778	0.602372	TGCATGCACGTCACAAGCTA	60.602	50.000	18.46	0.00	0.00	3.32
2225	4779	0.729116	GCATGCACGTCACAAGCTAT	59.271	50.000	14.21	0.00	0.00	2.97
2226	4780	1.933181	GCATGCACGTCACAAGCTATA	59.067	47.619	14.21	0.00	0.00	1.31
2227	4781	2.033407	GCATGCACGTCACAAGCTATAG	60.033	50.000	14.21	0.00	0.00	1.31
2228	4782	1.640428	TGCACGTCACAAGCTATAGC	58.360	50.000	17.33	17.33	42.49	2.97
2229	4783	1.067213	TGCACGTCACAAGCTATAGCA	60.067	47.619	26.07	2.34	45.16	3.49
2230	4784	1.590238	GCACGTCACAAGCTATAGCAG	59.410	52.381	26.07	19.35	45.16	4.24
2265	4819	8.985315	TTATTATCTGTCTTTGGCAATCTCAT	57.015	30.769	0.00	0.00	0.00	2.90
2513	5075	3.515104	CTGCACCTCCCCATTATGTTTTT	59.485	43.478	0.00	0.00	0.00	1.94
2600	5162	4.437390	CGTAGAGCCATTGATTTGTGGTTC	60.437	45.833	0.67	0.67	43.56	3.62
2633	5196	1.618074	GCCTTTCAGCCTTCTCCCATT	60.618	52.381	0.00	0.00	0.00	3.16
2653	5216	5.048294	CCATTAGCCGTGTTTCCTACTTTTT	60.048	40.000	0.00	0.00	0.00	1.94
2661	5224	6.365518	CCGTGTTTCCTACTTTTTCTCTACTC	59.634	42.308	0.00	0.00	0.00	2.59
2703	5267	1.395262	GCAGAAAAGAAGACGCTAGCC	59.605	52.381	9.66	0.00	0.00	3.93
2713	5277	1.071605	GACGCTAGCCAACAGAACAG	58.928	55.000	9.66	0.00	0.00	3.16
2781	5345	7.646526	TCGTGATCGTATGTAGTAGAAATTTGG	59.353	37.037	0.00	0.00	38.33	3.28
2784	5348	7.924412	TGATCGTATGTAGTAGAAATTTGGTCC	59.076	37.037	0.00	0.00	0.00	4.46
2808	5372	0.252696	ATGTGGGTCAGGACTAGCCA	60.253	55.000	6.07	0.00	42.05	4.75
2816	5380	3.292460	GTCAGGACTAGCCAGTATCTGT	58.708	50.000	12.34	0.00	40.02	3.41
2842	5406	6.438763	GGTGATTAACCTTTGAGTTGAAGTG	58.561	40.000	0.00	0.00	46.55	3.16
2853	5417	9.653287	CCTTTGAGTTGAAGTGAGTGTATATAA	57.347	33.333	0.00	0.00	0.00	0.98
2902	5466	4.951715	TGACAGCATTGATTTTAGAGCCAT	59.048	37.500	0.00	0.00	0.00	4.40
2916	5480	4.767578	AGAGCCATCATTCACTGTGTAT	57.232	40.909	7.79	0.35	0.00	2.29
2933	5497	6.018425	ACTGTGTATACACCGTTAGATCTACG	60.018	42.308	28.67	9.47	45.88	3.51
2936	5500	6.201806	GTGTATACACCGTTAGATCTACGACT	59.798	42.308	23.03	7.31	40.85	4.18
2937	5501	7.382488	GTGTATACACCGTTAGATCTACGACTA	59.618	40.741	23.03	10.08	40.85	2.59
2941	5505	2.810852	CCGTTAGATCTACGACTACCCC	59.189	54.545	19.64	0.00	41.33	4.95
2947	5511	1.923356	TCTACGACTACCCCGGTTTT	58.077	50.000	0.00	0.00	0.00	2.43
2948	5512	2.247358	TCTACGACTACCCCGGTTTTT	58.753	47.619	0.00	0.00	0.00	1.94
2950	5514	0.250424	ACGACTACCCCGGTTTTTGG	60.250	55.000	0.00	0.00	0.00	3.28
2951	5515	0.035176	CGACTACCCCGGTTTTTGGA	59.965	55.000	0.00	0.00	0.00	3.53
2952	5516	1.339342	CGACTACCCCGGTTTTTGGAT	60.339	52.381	0.00	0.00	0.00	3.41
2962	5526	6.071221	ACCCCGGTTTTTGGATTTTATTAGAC	60.071	38.462	0.00	0.00	0.00	2.59
2965	5529	7.094118	CCCGGTTTTTGGATTTTATTAGACTCA	60.094	37.037	0.00	0.00	0.00	3.41
2985	5549	9.355215	AGACTCACTTGTATTTACGTAGATTTG	57.645	33.333	3.69	0.00	0.00	2.32
2986	5550	8.475331	ACTCACTTGTATTTACGTAGATTTGG	57.525	34.615	3.69	0.00	0.00	3.28
2987	5551	8.092687	ACTCACTTGTATTTACGTAGATTTGGT	58.907	33.333	3.69	0.00	0.00	3.67
2988	5552	8.836268	TCACTTGTATTTACGTAGATTTGGTT	57.164	30.769	3.69	0.00	0.00	3.67
2989	5553	9.275398	TCACTTGTATTTACGTAGATTTGGTTT	57.725	29.630	3.69	0.00	0.00	3.27
2990	5554	9.325150	CACTTGTATTTACGTAGATTTGGTTTG	57.675	33.333	3.69	0.00	0.00	2.93
2991	5555	8.019094	ACTTGTATTTACGTAGATTTGGTTTGC	58.981	33.333	3.69	0.00	0.00	3.68
2992	5556	7.436430	TGTATTTACGTAGATTTGGTTTGCA	57.564	32.000	3.69	0.00	0.00	4.08
2993	5557	7.872881	TGTATTTACGTAGATTTGGTTTGCAA	58.127	30.769	3.69	0.00	0.00	4.08
2994	5558	8.350722	TGTATTTACGTAGATTTGGTTTGCAAA	58.649	29.630	8.05	8.05	0.00	3.68
2995	5559	9.182933	GTATTTACGTAGATTTGGTTTGCAAAA	57.817	29.630	14.67	0.00	0.00	2.44
2996	5560	8.825667	ATTTACGTAGATTTGGTTTGCAAAAT	57.174	26.923	14.67	3.34	31.23	1.82
2997	5561	9.915629	ATTTACGTAGATTTGGTTTGCAAAATA	57.084	25.926	14.67	2.77	28.83	1.40
2998	5562	9.915629	TTTACGTAGATTTGGTTTGCAAAATAT	57.084	25.926	14.67	3.70	28.83	1.28
2999	5563	7.810766	ACGTAGATTTGGTTTGCAAAATATG	57.189	32.000	14.67	6.56	28.83	1.78
3000	5564	7.598278	ACGTAGATTTGGTTTGCAAAATATGA	58.402	30.769	14.67	0.00	28.83	2.15
3001	5565	7.754924	ACGTAGATTTGGTTTGCAAAATATGAG	59.245	33.333	14.67	2.98	28.83	2.90
3002	5566	7.754924	CGTAGATTTGGTTTGCAAAATATGAGT	59.245	33.333	14.67	0.00	28.83	3.41
3003	5567	7.894376	AGATTTGGTTTGCAAAATATGAGTG	57.106	32.000	14.67	0.00	28.83	3.51
3004	5568	6.875195	AGATTTGGTTTGCAAAATATGAGTGG	59.125	34.615	14.67	0.00	28.83	4.00
3005	5569	5.543507	TTGGTTTGCAAAATATGAGTGGT	57.456	34.783	14.67	0.00	0.00	4.16
3006	5570	4.880759	TGGTTTGCAAAATATGAGTGGTG	58.119	39.130	14.67	0.00	0.00	4.17
3007	5571	3.679502	GGTTTGCAAAATATGAGTGGTGC	59.320	43.478	14.67	0.00	0.00	5.01
3008	5572	2.917701	TGCAAAATATGAGTGGTGCG	57.082	45.000	0.00	0.00	34.73	5.34
3009	5573	2.158559	TGCAAAATATGAGTGGTGCGT	58.841	42.857	0.00	0.00	34.73	5.24
3010	5574	2.161410	TGCAAAATATGAGTGGTGCGTC	59.839	45.455	0.00	0.00	34.73	5.19

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
42	46	8.280497	ACGACAAGACATGTACTATTTTTGAAC	58.720	33.333	0.00	0.00	44.12	3.18
58	62	2.012414	GCGCACGTACGACAAGACA	61.012	57.895	24.41	0.00	34.06	3.41
198	367	1.537202	CAGCTAAAGGTTGGTGCTCAC	59.463	52.381	0.00	0.00	0.00	3.51
208	377	0.682209	CAGCCCATGCAGCTAAAGGT	60.682	55.000	8.02	0.00	38.95	3.50
265	434	3.068691	TCCGCTCCCTCAAGTCCG	61.069	66.667	0.00	0.00	0.00	4.79
376	577	2.590575	CACCACACCACGACCACC	60.591	66.667	0.00	0.00	0.00	4.61
509	3034	2.355412	GGTACGGGCATAAGGTCTTGTT	60.355	50.000	0.00	0.00	0.00	2.83
510	3035	1.208776	GGTACGGGCATAAGGTCTTGT	59.791	52.381	0.00	0.00	0.00	3.16
664	3189	1.612146	TTGGCGAGATGGACTGGGA	60.612	57.895	0.00	0.00	0.00	4.37
759	3296	0.394899	ATCAAAGGTAGCAGGCAGGC	60.395	55.000	0.00	0.00	0.00	4.85
760	3297	1.211457	AGATCAAAGGTAGCAGGCAGG	59.789	52.381	0.00	0.00	0.00	4.85
761	3298	2.170187	AGAGATCAAAGGTAGCAGGCAG	59.830	50.000	0.00	0.00	0.00	4.85
762	3299	2.191400	AGAGATCAAAGGTAGCAGGCA	58.809	47.619	0.00	0.00	0.00	4.75
763	3300	2.998316	AGAGATCAAAGGTAGCAGGC	57.002	50.000	0.00	0.00	0.00	4.85
764	3301	4.442753	GGAGAAGAGATCAAAGGTAGCAGG	60.443	50.000	0.00	0.00	0.00	4.85
765	3302	4.692228	GGAGAAGAGATCAAAGGTAGCAG	58.308	47.826	0.00	0.00	0.00	4.24
892	3429	4.404654	GAAGTTGGGCGCGGCAAG	62.405	66.667	34.30	0.00	0.00	4.01
990	3527	0.257039	CAAAGGACATGGAGGGAGGG	59.743	60.000	0.00	0.00	0.00	4.30
995	3532	1.180029	CTTGCCAAAGGACATGGAGG	58.820	55.000	0.00	0.00	40.56	4.30
1015	3552	1.153289	CCTCCTTGCTCATGTCCGG	60.153	63.158	0.00	0.00	0.00	5.14
1894	4443	2.112297	GCCACAAGGTTCCACCGA	59.888	61.111	0.00	0.00	44.90	4.69
2032	4584	3.195396	GGATGCAGGCAATCTGGTAAAAA	59.805	43.478	0.00	0.00	43.54	1.94
2055	4607	1.869767	GATCTAGCCATGAACCTTGCG	59.130	52.381	0.00	0.00	0.00	4.85
2224	4778	9.218525	ACAGATAATAATGGGCTATACTGCTAT	57.781	33.333	0.00	0.00	0.00	2.97
2225	4779	8.609617	ACAGATAATAATGGGCTATACTGCTA	57.390	34.615	0.00	0.00	0.00	3.49
2226	4780	7.401493	AGACAGATAATAATGGGCTATACTGCT	59.599	37.037	0.00	0.00	0.00	4.24
2227	4781	7.560368	AGACAGATAATAATGGGCTATACTGC	58.440	38.462	0.00	0.00	0.00	4.40
2228	4782	9.950496	AAAGACAGATAATAATGGGCTATACTG	57.050	33.333	0.00	0.00	0.00	2.74
2229	4783	9.950496	CAAAGACAGATAATAATGGGCTATACT	57.050	33.333	0.00	0.00	0.00	2.12
2230	4784	9.167311	CCAAAGACAGATAATAATGGGCTATAC	57.833	37.037	0.00	0.00	0.00	1.47
2265	4819	8.664992	TGGCATATGAACTATATTTGGTTAGGA	58.335	33.333	6.97	0.00	29.37	2.94
2406	4968	2.871453	ACCACAAAAGGGTATGGTGTC	58.129	47.619	0.00	0.00	43.88	3.67
2600	5162	1.760613	TGAAAGGCCCATACGGTAGAG	59.239	52.381	0.00	0.00	0.00	2.43
2633	5196	4.964593	AGAAAAAGTAGGAAACACGGCTA	58.035	39.130	0.00	0.00	0.00	3.93
2653	5216	9.047947	TGCATATATACTGGAGTAGAGTAGAGA	57.952	37.037	0.00	0.00	33.52	3.10
2686	5249	2.806244	TGTTGGCTAGCGTCTTCTTTTC	59.194	45.455	9.00	0.00	0.00	2.29
2691	5255	1.727335	GTTCTGTTGGCTAGCGTCTTC	59.273	52.381	9.00	0.00	0.00	2.87
2696	5260	0.037326	TCCTGTTCTGTTGGCTAGCG	60.037	55.000	9.00	0.00	0.00	4.26
2703	5267	0.595095	GCAGCCTTCCTGTTCTGTTG	59.405	55.000	0.00	0.00	43.71	3.33
2713	5277	2.892425	CGTCCATCGCAGCCTTCC	60.892	66.667	0.00	0.00	0.00	3.46
2742	5306	0.971386	ATCACGACGGGGTAACAACT	59.029	50.000	0.00	0.00	39.74	3.16
2781	5345	0.107017	CCTGACCCACATCCATGGAC	60.107	60.000	18.99	2.56	43.02	4.02
2784	5348	0.914644	AGTCCTGACCCACATCCATG	59.085	55.000	0.00	0.00	0.00	3.66
2916	5480	5.050490	GGTAGTCGTAGATCTAACGGTGTA	58.950	45.833	18.34	9.37	40.67	2.90
2933	5497	2.502142	ATCCAAAAACCGGGGTAGTC	57.498	50.000	6.32	0.00	0.00	2.59
2936	5500	7.122501	GTCTAATAAAATCCAAAAACCGGGGTA	59.877	37.037	6.32	0.00	0.00	3.69
2937	5501	6.017830	TCTAATAAAATCCAAAAACCGGGGT	58.982	36.000	6.32	0.00	0.00	4.95
2941	5505	8.512138	AGTGAGTCTAATAAAATCCAAAAACCG	58.488	33.333	0.00	0.00	0.00	4.44
2962	5526	8.475331	ACCAAATCTACGTAAATACAAGTGAG	57.525	34.615	0.00	0.00	0.00	3.51
2965	5529	8.019094	GCAAACCAAATCTACGTAAATACAAGT	58.981	33.333	0.00	0.00	0.00	3.16
2975	5539	7.598278	TCATATTTTGCAAACCAAATCTACGT	58.402	30.769	12.39	0.00	42.63	3.57
2976	5540	7.754924	ACTCATATTTTGCAAACCAAATCTACG	59.245	33.333	12.39	0.00	42.63	3.51
2977	5541	8.863049	CACTCATATTTTGCAAACCAAATCTAC	58.137	33.333	12.39	0.00	42.63	2.59
2978	5542	8.034215	CCACTCATATTTTGCAAACCAAATCTA	58.966	33.333	12.39	0.00	42.63	1.98
2979	5543	6.875195	CCACTCATATTTTGCAAACCAAATCT	59.125	34.615	12.39	0.00	42.63	2.40
2980	5544	6.650390	ACCACTCATATTTTGCAAACCAAATC	59.350	34.615	12.39	0.00	42.63	2.17
2981	5545	6.427547	CACCACTCATATTTTGCAAACCAAAT	59.572	34.615	12.39	5.32	42.63	2.32
2982	5546	5.757320	CACCACTCATATTTTGCAAACCAAA	59.243	36.000	12.39	0.00	41.48	3.28
2983	5547	5.295950	CACCACTCATATTTTGCAAACCAA	58.704	37.500	12.39	0.00	0.00	3.67
2984	5548	4.798924	GCACCACTCATATTTTGCAAACCA	60.799	41.667	12.39	2.60	0.00	3.67
2985	5549	3.679502	GCACCACTCATATTTTGCAAACC	59.320	43.478	12.39	0.00	0.00	3.27
2986	5550	3.364621	CGCACCACTCATATTTTGCAAAC	59.635	43.478	12.39	0.00	0.00	2.93
2987	5551	3.005261	ACGCACCACTCATATTTTGCAAA	59.995	39.130	8.05	8.05	0.00	3.68
2988	5552	2.556189	ACGCACCACTCATATTTTGCAA	59.444	40.909	0.00	0.00	0.00	4.08
2989	5553	2.158559	ACGCACCACTCATATTTTGCA	58.841	42.857	0.00	0.00	0.00	4.08
2990	5554	2.785679	GACGCACCACTCATATTTTGC	58.214	47.619	0.00	0.00	0.00	3.68

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.