Multiple sequence alignment - TraesCS5B01G243000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G243000 chr5B 100.000 2728 0 0 1 2728 423224258 423226985 0.000000e+00 5038.0
1 TraesCS5B01G243000 chr5B 97.778 270 6 0 1 270 332621390 332621121 1.480000e-127 466.0
2 TraesCS5B01G243000 chr5B 97.753 267 5 1 1 267 336805332 336805597 2.480000e-125 459.0
3 TraesCS5B01G243000 chr5B 97.706 218 5 0 719 936 696723004 696722787 2.560000e-100 375.0
4 TraesCS5B01G243000 chr5D 92.706 1796 98 17 938 2728 358010205 358011972 0.000000e+00 2560.0
5 TraesCS5B01G243000 chr5D 88.462 442 9 6 284 687 358009773 358010210 1.890000e-136 496.0
6 TraesCS5B01G243000 chr5A 92.703 1206 61 13 938 2126 458966713 458967908 0.000000e+00 1714.0
7 TraesCS5B01G243000 chr5A 92.606 541 35 3 2193 2728 458968003 458968543 0.000000e+00 773.0
8 TraesCS5B01G243000 chr5A 99.254 268 2 0 1 268 617992210 617992477 4.080000e-133 484.0
9 TraesCS5B01G243000 chr5A 78.538 424 32 23 294 687 458966324 458966718 9.830000e-55 224.0
10 TraesCS5B01G243000 chr5A 91.753 97 8 0 1095 1191 373994061 373993965 4.740000e-28 135.0
11 TraesCS5B01G243000 chr2B 98.889 270 3 0 1 270 708691895 708691626 1.470000e-132 483.0
12 TraesCS5B01G243000 chr2B 96.789 218 7 0 719 936 250280243 250280026 5.550000e-97 364.0
13 TraesCS5B01G243000 chr2B 96.789 218 7 0 719 936 663491267 663491050 5.550000e-97 364.0
14 TraesCS5B01G243000 chr2B 96.789 218 6 1 719 936 478908017 478907801 2.000000e-96 363.0
15 TraesCS5B01G243000 chr2B 77.457 346 46 13 1267 1581 691810531 691810187 7.760000e-41 178.0
16 TraesCS5B01G243000 chr2B 89.011 91 10 0 1095 1185 691810730 691810640 2.220000e-21 113.0
17 TraesCS5B01G243000 chr6A 98.141 269 4 1 1 268 157657966 157658234 4.110000e-128 468.0
18 TraesCS5B01G243000 chr1A 98.134 268 5 0 1 268 58194964 58194697 4.110000e-128 468.0
19 TraesCS5B01G243000 chr1A 96.833 221 7 0 716 936 57760849 57761069 1.190000e-98 370.0
20 TraesCS5B01G243000 chr1A 84.337 249 23 3 690 936 256705312 256705078 2.110000e-56 230.0
21 TraesCS5B01G243000 chr3A 97.761 268 6 0 1 268 627951210 627950943 1.910000e-126 462.0
22 TraesCS5B01G243000 chr3A 88.517 209 12 1 1356 1564 187383796 187383600 2.710000e-60 243.0
23 TraesCS5B01G243000 chr2A 97.753 267 6 0 1 267 470637118 470637384 6.880000e-126 460.0
24 TraesCS5B01G243000 chr2A 79.532 342 43 14 1266 1580 713936134 713935793 4.570000e-53 219.0
25 TraesCS5B01G243000 chr2A 89.011 91 10 0 1095 1185 713936335 713936245 2.220000e-21 113.0
26 TraesCS5B01G243000 chr1B 97.753 267 6 0 1 267 686838875 686839141 6.880000e-126 460.0
27 TraesCS5B01G243000 chr1B 96.789 218 7 0 719 936 3574831 3574614 5.550000e-97 364.0
28 TraesCS5B01G243000 chr1B 84.677 248 26 1 689 936 39073255 39073020 1.260000e-58 237.0
29 TraesCS5B01G243000 chr1B 83.465 254 20 8 689 936 9657084 9657321 1.640000e-52 217.0
30 TraesCS5B01G243000 chr3B 94.715 246 11 1 692 937 236513752 236513509 5.510000e-102 381.0
31 TraesCS5B01G243000 chr7B 97.248 218 6 0 719 936 641451843 641451626 1.190000e-98 370.0
32 TraesCS5B01G243000 chr7B 85.433 254 25 1 683 936 704792054 704792295 1.250000e-63 254.0
33 TraesCS5B01G243000 chr7B 82.955 264 33 1 1299 1562 65911252 65911001 7.600000e-56 228.0
34 TraesCS5B01G243000 chr7A 97.248 218 5 1 719 936 715338677 715338461 4.290000e-98 368.0
35 TraesCS5B01G243000 chr7A 86.090 266 25 6 1299 1564 675516159 675515906 2.680000e-70 276.0
36 TraesCS5B01G243000 chr7A 85.714 266 26 4 1299 1564 12963649 12963396 1.240000e-68 270.0
37 TraesCS5B01G243000 chr7A 96.939 98 3 0 1095 1192 12963742 12963645 6.040000e-37 165.0
38 TraesCS5B01G243000 chr7A 93.878 98 6 0 1095 1192 675516252 675516155 6.090000e-32 148.0
39 TraesCS5B01G243000 chr6B 90.283 247 11 2 689 935 203994151 203994384 7.340000e-81 311.0
40 TraesCS5B01G243000 chr6B 84.586 266 29 1 1299 1564 89687123 89686870 1.250000e-63 254.0
41 TraesCS5B01G243000 chr2D 86.122 245 22 1 689 933 125684036 125684268 1.250000e-63 254.0
42 TraesCS5B01G243000 chr2D 88.356 146 14 3 1438 1580 575770147 575770002 3.610000e-39 172.0
43 TraesCS5B01G243000 chr2D 82.468 154 22 5 1266 1415 575770358 575770206 2.200000e-26 130.0
44 TraesCS5B01G243000 chr2D 89.011 91 10 0 1095 1185 575770561 575770471 2.220000e-21 113.0
45 TraesCS5B01G243000 chr1D 82.661 248 31 4 689 936 418272354 418272119 2.750000e-50 209.0
46 TraesCS5B01G243000 chr4A 92.188 64 5 0 1095 1158 175693905 175693968 1.040000e-14 91.6
47 TraesCS5B01G243000 chr6D 81.513 119 10 5 690 808 9910836 9910942 1.350000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G243000 chr5B 423224258 423226985 2727 False 5038.000000 5038 100.000 1 2728 1 chr5B.!!$F2 2727
1 TraesCS5B01G243000 chr5D 358009773 358011972 2199 False 1528.000000 2560 90.584 284 2728 2 chr5D.!!$F1 2444
2 TraesCS5B01G243000 chr5A 458966324 458968543 2219 False 903.666667 1714 87.949 294 2728 3 chr5A.!!$F2 2434

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.034896 GAAAGGGTCAGCGGAGTGAA 59.965 55.0 0.00 0.0 0.00 3.18 F
700 762 0.399949 CCACCCCTAGGCTGGTCATA 60.400 60.0 13.45 0.0 36.11 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1234 1308 0.311165 CGTGTCCGTCTCAGTTCAGT 59.689 55.000 0.0 0.0 0.0 3.41 R
1966 2045 1.000955 TGGCAAACAAACAACAACCGT 59.999 42.857 0.0 0.0 0.0 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.371975 GGGCTAAGTCAACGTGCA 57.628 55.556 0.00 0.00 0.00 4.57
18 19 2.162716 GGGCTAAGTCAACGTGCAG 58.837 57.895 0.00 0.00 0.00 4.41
19 20 1.497722 GGCTAAGTCAACGTGCAGC 59.502 57.895 0.00 0.00 0.00 5.25
21 22 1.130613 CTAAGTCAACGTGCAGCGC 59.869 57.895 0.00 0.00 46.11 5.92
22 23 2.227968 CTAAGTCAACGTGCAGCGCC 62.228 60.000 2.29 0.00 46.11 6.53
23 24 2.709125 TAAGTCAACGTGCAGCGCCT 62.709 55.000 2.29 0.00 46.11 5.52
24 25 2.709125 AAGTCAACGTGCAGCGCCTA 62.709 55.000 2.29 0.00 46.11 3.93
25 26 2.029815 TCAACGTGCAGCGCCTAA 59.970 55.556 2.29 0.00 46.11 2.69
26 27 2.027073 TCAACGTGCAGCGCCTAAG 61.027 57.895 2.29 0.00 46.11 2.18
27 28 2.027073 CAACGTGCAGCGCCTAAGA 61.027 57.895 2.29 0.00 46.11 2.10
28 29 2.027625 AACGTGCAGCGCCTAAGAC 61.028 57.895 2.29 0.00 46.11 3.01
29 30 2.432456 CGTGCAGCGCCTAAGACA 60.432 61.111 2.29 0.00 0.00 3.41
30 31 2.730672 CGTGCAGCGCCTAAGACAC 61.731 63.158 2.29 2.76 0.00 3.67
31 32 2.432456 TGCAGCGCCTAAGACACG 60.432 61.111 2.29 0.00 0.00 4.49
32 33 3.188786 GCAGCGCCTAAGACACGG 61.189 66.667 2.29 0.00 0.00 4.94
33 34 2.509336 CAGCGCCTAAGACACGGG 60.509 66.667 2.29 0.00 0.00 5.28
34 35 4.452733 AGCGCCTAAGACACGGGC 62.453 66.667 2.29 0.00 42.18 6.13
37 38 4.452733 GCCTAAGACACGGGCGCT 62.453 66.667 7.64 0.00 36.37 5.92
38 39 3.072486 GCCTAAGACACGGGCGCTA 62.072 63.158 7.64 0.00 36.37 4.26
39 40 1.226888 CCTAAGACACGGGCGCTAC 60.227 63.158 7.64 0.00 0.00 3.58
40 41 1.509463 CTAAGACACGGGCGCTACA 59.491 57.895 7.64 0.00 0.00 2.74
41 42 0.108992 CTAAGACACGGGCGCTACAA 60.109 55.000 7.64 0.00 0.00 2.41
42 43 0.533491 TAAGACACGGGCGCTACAAT 59.467 50.000 7.64 0.00 0.00 2.71
43 44 0.533491 AAGACACGGGCGCTACAATA 59.467 50.000 7.64 0.00 0.00 1.90
44 45 0.750850 AGACACGGGCGCTACAATAT 59.249 50.000 7.64 0.00 0.00 1.28
45 46 1.958579 AGACACGGGCGCTACAATATA 59.041 47.619 7.64 0.00 0.00 0.86
46 47 2.056577 GACACGGGCGCTACAATATAC 58.943 52.381 7.64 0.00 0.00 1.47
47 48 1.409790 ACACGGGCGCTACAATATACA 59.590 47.619 7.64 0.00 0.00 2.29
48 49 1.790623 CACGGGCGCTACAATATACAC 59.209 52.381 7.64 0.00 0.00 2.90
49 50 1.409790 ACGGGCGCTACAATATACACA 59.590 47.619 7.64 0.00 0.00 3.72
50 51 2.058798 CGGGCGCTACAATATACACAG 58.941 52.381 7.64 0.00 0.00 3.66
51 52 2.545113 CGGGCGCTACAATATACACAGT 60.545 50.000 7.64 0.00 0.00 3.55
52 53 2.800544 GGGCGCTACAATATACACAGTG 59.199 50.000 7.64 0.00 0.00 3.66
53 54 2.221055 GGCGCTACAATATACACAGTGC 59.779 50.000 7.64 0.00 40.99 4.40
54 55 2.097396 GCGCTACAATATACACAGTGCG 60.097 50.000 0.00 0.00 43.05 5.34
55 56 2.471370 CGCTACAATATACACAGTGCGG 59.529 50.000 0.00 0.00 37.68 5.69
56 57 2.221055 GCTACAATATACACAGTGCGGC 59.779 50.000 0.00 0.00 0.00 6.53
57 58 1.286501 ACAATATACACAGTGCGGCG 58.713 50.000 0.51 0.51 0.00 6.46
58 59 0.042188 CAATATACACAGTGCGGCGC 60.042 55.000 27.44 27.44 0.00 6.53
59 60 1.157870 AATATACACAGTGCGGCGCC 61.158 55.000 30.82 19.07 0.00 6.53
60 61 2.028125 ATATACACAGTGCGGCGCCT 62.028 55.000 30.82 22.35 0.00 5.52
61 62 1.385756 TATACACAGTGCGGCGCCTA 61.386 55.000 30.82 9.01 0.00 3.93
62 63 2.233605 ATACACAGTGCGGCGCCTAA 62.234 55.000 30.82 8.10 0.00 2.69
63 64 2.829043 TACACAGTGCGGCGCCTAAG 62.829 60.000 30.82 20.62 0.00 2.18
64 65 4.003788 ACAGTGCGGCGCCTAAGT 62.004 61.111 30.82 19.11 0.00 2.24
65 66 3.188786 CAGTGCGGCGCCTAAGTC 61.189 66.667 30.82 12.21 0.00 3.01
66 67 3.382832 AGTGCGGCGCCTAAGTCT 61.383 61.111 30.82 14.25 0.00 3.24
67 68 2.434359 GTGCGGCGCCTAAGTCTT 60.434 61.111 30.82 0.00 0.00 3.01
68 69 1.153706 GTGCGGCGCCTAAGTCTTA 60.154 57.895 30.82 3.60 0.00 2.10
69 70 1.141019 TGCGGCGCCTAAGTCTTAG 59.859 57.895 30.82 12.07 0.00 2.18
76 77 2.979130 CCTAAGTCTTAGGCGCTGC 58.021 57.895 22.90 0.00 45.72 5.25
77 78 0.175760 CCTAAGTCTTAGGCGCTGCA 59.824 55.000 22.90 0.00 45.72 4.41
78 79 1.565305 CTAAGTCTTAGGCGCTGCAG 58.435 55.000 10.11 10.11 0.00 4.41
79 80 0.895530 TAAGTCTTAGGCGCTGCAGT 59.104 50.000 16.64 0.00 0.00 4.40
80 81 0.671781 AAGTCTTAGGCGCTGCAGTG 60.672 55.000 23.02 23.02 0.00 3.66
81 82 1.374758 GTCTTAGGCGCTGCAGTGT 60.375 57.895 27.02 12.06 0.00 3.55
82 83 0.951040 GTCTTAGGCGCTGCAGTGTT 60.951 55.000 27.02 18.10 0.00 3.32
83 84 0.950555 TCTTAGGCGCTGCAGTGTTG 60.951 55.000 27.02 13.27 0.00 3.33
84 85 1.227823 TTAGGCGCTGCAGTGTTGT 60.228 52.632 27.02 14.77 0.00 3.32
85 86 1.227999 TTAGGCGCTGCAGTGTTGTC 61.228 55.000 27.02 14.64 0.00 3.18
86 87 2.099652 TAGGCGCTGCAGTGTTGTCT 62.100 55.000 27.02 19.92 0.00 3.41
87 88 2.250485 GCGCTGCAGTGTTGTCTG 59.750 61.111 27.02 3.52 38.35 3.51
88 89 2.537560 GCGCTGCAGTGTTGTCTGT 61.538 57.895 27.02 0.00 37.70 3.41
89 90 1.277739 CGCTGCAGTGTTGTCTGTG 59.722 57.895 19.30 0.00 37.70 3.66
90 91 1.650912 GCTGCAGTGTTGTCTGTGG 59.349 57.895 16.64 0.00 37.70 4.17
91 92 1.789078 GCTGCAGTGTTGTCTGTGGG 61.789 60.000 16.64 0.00 37.70 4.61
92 93 1.152984 TGCAGTGTTGTCTGTGGGG 60.153 57.895 0.00 0.00 37.70 4.96
93 94 2.555547 GCAGTGTTGTCTGTGGGGC 61.556 63.158 0.00 0.00 37.70 5.80
94 95 1.898574 CAGTGTTGTCTGTGGGGCC 60.899 63.158 0.00 0.00 0.00 5.80
95 96 2.194597 GTGTTGTCTGTGGGGCCA 59.805 61.111 4.39 0.00 0.00 5.36
96 97 1.898574 GTGTTGTCTGTGGGGCCAG 60.899 63.158 4.39 0.00 0.00 4.85
97 98 2.282462 GTTGTCTGTGGGGCCAGG 60.282 66.667 4.39 0.00 33.14 4.45
98 99 3.579302 TTGTCTGTGGGGCCAGGG 61.579 66.667 4.39 0.00 33.14 4.45
119 120 3.129502 CCACGCTGGCAGGATGTG 61.130 66.667 17.64 9.10 39.31 3.21
128 129 4.615901 CAGGATGTGCAACGCCTA 57.384 55.556 2.54 0.00 41.54 3.93
129 130 2.853159 CAGGATGTGCAACGCCTAA 58.147 52.632 2.54 0.00 41.54 2.69
130 131 0.729116 CAGGATGTGCAACGCCTAAG 59.271 55.000 2.54 0.00 41.54 2.18
131 132 0.324943 AGGATGTGCAACGCCTAAGT 59.675 50.000 0.96 0.00 41.64 2.24
132 133 0.447801 GGATGTGCAACGCCTAAGTG 59.552 55.000 0.00 0.00 42.39 3.16
133 134 1.438651 GATGTGCAACGCCTAAGTGA 58.561 50.000 0.00 0.00 42.39 3.41
134 135 2.009774 GATGTGCAACGCCTAAGTGAT 58.990 47.619 0.00 0.00 42.39 3.06
135 136 1.155889 TGTGCAACGCCTAAGTGATG 58.844 50.000 0.00 0.00 42.39 3.07
136 137 0.447801 GTGCAACGCCTAAGTGATGG 59.552 55.000 0.00 0.00 0.00 3.51
137 138 0.676466 TGCAACGCCTAAGTGATGGG 60.676 55.000 0.00 0.00 0.00 4.00
141 142 2.190578 GCCTAAGTGATGGGCGCT 59.809 61.111 7.64 0.00 46.58 5.92
142 143 2.182842 GCCTAAGTGATGGGCGCTG 61.183 63.158 7.64 0.00 46.58 5.18
143 144 2.182842 CCTAAGTGATGGGCGCTGC 61.183 63.158 7.64 0.00 37.43 5.25
144 145 1.450134 CTAAGTGATGGGCGCTGCA 60.450 57.895 7.64 0.00 37.43 4.41
145 146 1.709147 CTAAGTGATGGGCGCTGCAC 61.709 60.000 7.64 15.25 37.43 4.57
151 152 4.393155 TGGGCGCTGCACAGTAGG 62.393 66.667 7.64 0.00 36.87 3.18
153 154 4.394712 GGCGCTGCACAGTAGGGT 62.395 66.667 7.64 0.00 0.00 4.34
154 155 3.121030 GCGCTGCACAGTAGGGTG 61.121 66.667 0.00 0.00 41.72 4.61
195 196 2.342279 CACGAAAGGGTCAGCGGA 59.658 61.111 0.00 0.00 0.00 5.54
196 197 1.738099 CACGAAAGGGTCAGCGGAG 60.738 63.158 0.00 0.00 0.00 4.63
197 198 2.207924 ACGAAAGGGTCAGCGGAGT 61.208 57.895 0.00 0.00 0.00 3.85
198 199 1.738099 CGAAAGGGTCAGCGGAGTG 60.738 63.158 0.00 0.00 0.00 3.51
199 200 1.671742 GAAAGGGTCAGCGGAGTGA 59.328 57.895 0.00 0.00 0.00 3.41
200 201 0.034896 GAAAGGGTCAGCGGAGTGAA 59.965 55.000 0.00 0.00 0.00 3.18
201 202 0.472471 AAAGGGTCAGCGGAGTGAAA 59.528 50.000 0.00 0.00 0.00 2.69
202 203 0.693049 AAGGGTCAGCGGAGTGAAAT 59.307 50.000 0.00 0.00 0.00 2.17
203 204 0.693049 AGGGTCAGCGGAGTGAAATT 59.307 50.000 0.00 0.00 0.00 1.82
204 205 1.073923 AGGGTCAGCGGAGTGAAATTT 59.926 47.619 0.00 0.00 0.00 1.82
205 206 1.886542 GGGTCAGCGGAGTGAAATTTT 59.113 47.619 0.00 0.00 0.00 1.82
206 207 2.296190 GGGTCAGCGGAGTGAAATTTTT 59.704 45.455 0.00 0.00 0.00 1.94
226 227 4.799564 TTTTGAAAGCAGGTCAGTTTGT 57.200 36.364 0.00 0.00 0.00 2.83
227 228 3.781079 TTGAAAGCAGGTCAGTTTGTG 57.219 42.857 0.00 0.00 0.00 3.33
228 229 2.997980 TGAAAGCAGGTCAGTTTGTGA 58.002 42.857 0.00 0.00 0.00 3.58
229 230 3.351740 TGAAAGCAGGTCAGTTTGTGAA 58.648 40.909 0.00 0.00 36.74 3.18
230 231 3.953612 TGAAAGCAGGTCAGTTTGTGAAT 59.046 39.130 0.00 0.00 36.74 2.57
231 232 4.402155 TGAAAGCAGGTCAGTTTGTGAATT 59.598 37.500 0.00 0.00 36.74 2.17
232 233 3.996150 AGCAGGTCAGTTTGTGAATTG 57.004 42.857 0.00 0.00 36.74 2.32
233 234 3.554934 AGCAGGTCAGTTTGTGAATTGA 58.445 40.909 0.00 0.00 36.74 2.57
234 235 4.147321 AGCAGGTCAGTTTGTGAATTGAT 58.853 39.130 0.00 0.00 36.74 2.57
235 236 4.586001 AGCAGGTCAGTTTGTGAATTGATT 59.414 37.500 0.00 0.00 36.74 2.57
236 237 5.069516 AGCAGGTCAGTTTGTGAATTGATTT 59.930 36.000 0.00 0.00 36.74 2.17
237 238 6.265196 AGCAGGTCAGTTTGTGAATTGATTTA 59.735 34.615 0.00 0.00 36.74 1.40
238 239 6.583806 GCAGGTCAGTTTGTGAATTGATTTAG 59.416 38.462 0.00 0.00 36.74 1.85
239 240 7.086376 CAGGTCAGTTTGTGAATTGATTTAGG 58.914 38.462 0.00 0.00 36.74 2.69
240 241 5.863935 GGTCAGTTTGTGAATTGATTTAGGC 59.136 40.000 0.00 0.00 36.74 3.93
241 242 5.863935 GTCAGTTTGTGAATTGATTTAGGCC 59.136 40.000 0.00 0.00 36.74 5.19
242 243 5.774690 TCAGTTTGTGAATTGATTTAGGCCT 59.225 36.000 11.78 11.78 29.64 5.19
243 244 6.071952 TCAGTTTGTGAATTGATTTAGGCCTC 60.072 38.462 9.68 0.00 29.64 4.70
244 245 5.774690 AGTTTGTGAATTGATTTAGGCCTCA 59.225 36.000 9.68 0.00 0.00 3.86
245 246 5.902613 TTGTGAATTGATTTAGGCCTCAG 57.097 39.130 9.68 0.00 0.00 3.35
246 247 4.272489 TGTGAATTGATTTAGGCCTCAGG 58.728 43.478 9.68 0.00 0.00 3.86
247 248 4.263905 TGTGAATTGATTTAGGCCTCAGGT 60.264 41.667 9.68 0.00 0.00 4.00
248 249 4.336713 GTGAATTGATTTAGGCCTCAGGTC 59.663 45.833 9.68 4.30 0.00 3.85
249 250 4.018506 TGAATTGATTTAGGCCTCAGGTCA 60.019 41.667 9.68 7.29 0.00 4.02
250 251 4.591321 ATTGATTTAGGCCTCAGGTCAA 57.409 40.909 9.68 16.26 0.00 3.18
251 252 4.380843 TTGATTTAGGCCTCAGGTCAAA 57.619 40.909 9.68 2.90 0.00 2.69
252 253 4.591321 TGATTTAGGCCTCAGGTCAAAT 57.409 40.909 9.68 8.83 0.00 2.32
253 254 5.708736 TGATTTAGGCCTCAGGTCAAATA 57.291 39.130 9.68 0.00 0.00 1.40
254 255 6.266131 TGATTTAGGCCTCAGGTCAAATAT 57.734 37.500 9.68 0.00 0.00 1.28
255 256 6.064060 TGATTTAGGCCTCAGGTCAAATATG 58.936 40.000 9.68 0.00 0.00 1.78
256 257 5.450818 TTTAGGCCTCAGGTCAAATATGT 57.549 39.130 9.68 0.00 0.00 2.29
257 258 3.287867 AGGCCTCAGGTCAAATATGTG 57.712 47.619 0.00 0.00 0.00 3.21
258 259 2.846206 AGGCCTCAGGTCAAATATGTGA 59.154 45.455 0.00 0.00 0.00 3.58
259 260 3.266772 AGGCCTCAGGTCAAATATGTGAA 59.733 43.478 0.00 0.00 0.00 3.18
260 261 4.016444 GGCCTCAGGTCAAATATGTGAAA 58.984 43.478 0.00 0.00 0.00 2.69
261 262 4.646492 GGCCTCAGGTCAAATATGTGAAAT 59.354 41.667 0.00 0.00 0.00 2.17
262 263 5.127682 GGCCTCAGGTCAAATATGTGAAATT 59.872 40.000 0.00 0.00 0.00 1.82
263 264 6.321181 GGCCTCAGGTCAAATATGTGAAATTA 59.679 38.462 0.00 0.00 0.00 1.40
264 265 7.014615 GGCCTCAGGTCAAATATGTGAAATTAT 59.985 37.037 0.00 0.00 0.00 1.28
265 266 8.078596 GCCTCAGGTCAAATATGTGAAATTATC 58.921 37.037 0.00 0.00 0.00 1.75
266 267 8.571336 CCTCAGGTCAAATATGTGAAATTATCC 58.429 37.037 0.00 0.00 0.00 2.59
267 268 8.463930 TCAGGTCAAATATGTGAAATTATCCC 57.536 34.615 0.00 0.00 0.00 3.85
268 269 7.505585 TCAGGTCAAATATGTGAAATTATCCCC 59.494 37.037 0.00 0.00 0.00 4.81
269 270 6.490040 AGGTCAAATATGTGAAATTATCCCCG 59.510 38.462 0.00 0.00 0.00 5.73
270 271 6.264518 GGTCAAATATGTGAAATTATCCCCGT 59.735 38.462 0.00 0.00 0.00 5.28
271 272 7.138736 GTCAAATATGTGAAATTATCCCCGTG 58.861 38.462 0.00 0.00 0.00 4.94
272 273 6.264292 TCAAATATGTGAAATTATCCCCGTGG 59.736 38.462 0.00 0.00 0.00 4.94
273 274 3.662759 ATGTGAAATTATCCCCGTGGT 57.337 42.857 0.00 0.00 0.00 4.16
274 275 4.781775 ATGTGAAATTATCCCCGTGGTA 57.218 40.909 0.00 0.00 0.00 3.25
275 276 3.876341 TGTGAAATTATCCCCGTGGTAC 58.124 45.455 0.00 0.00 0.00 3.34
276 277 2.867975 GTGAAATTATCCCCGTGGTACG 59.132 50.000 0.00 0.00 42.11 3.67
277 278 1.869132 GAAATTATCCCCGTGGTACGC 59.131 52.381 0.00 0.00 40.91 4.42
377 386 3.912907 GCCGTCGACCCATCCGAT 61.913 66.667 10.58 0.00 38.38 4.18
391 400 3.554129 CCATCCGATAGAATTACCACGCA 60.554 47.826 0.00 0.00 39.76 5.24
392 401 3.088194 TCCGATAGAATTACCACGCAC 57.912 47.619 0.00 0.00 39.76 5.34
393 402 1.784856 CCGATAGAATTACCACGCACG 59.215 52.381 0.00 0.00 39.76 5.34
394 403 2.456989 CGATAGAATTACCACGCACGT 58.543 47.619 0.00 0.00 39.76 4.49
441 459 3.041940 GCACCCGTCCGTCACAAG 61.042 66.667 0.00 0.00 0.00 3.16
698 760 2.285368 CCACCCCTAGGCTGGTCA 60.285 66.667 13.45 0.00 36.11 4.02
699 761 1.694169 CCACCCCTAGGCTGGTCAT 60.694 63.158 13.45 0.00 36.11 3.06
700 762 0.399949 CCACCCCTAGGCTGGTCATA 60.400 60.000 13.45 0.00 36.11 2.15
701 763 1.051812 CACCCCTAGGCTGGTCATAG 58.948 60.000 2.05 0.00 36.11 2.23
702 764 0.642710 ACCCCTAGGCTGGTCATAGT 59.357 55.000 2.05 0.00 36.11 2.12
703 765 1.051812 CCCCTAGGCTGGTCATAGTG 58.948 60.000 2.05 0.00 0.00 2.74
704 766 1.413082 CCCCTAGGCTGGTCATAGTGA 60.413 57.143 2.05 0.00 0.00 3.41
705 767 1.967066 CCCTAGGCTGGTCATAGTGAG 59.033 57.143 2.05 0.00 0.00 3.51
706 768 2.424957 CCCTAGGCTGGTCATAGTGAGA 60.425 54.545 2.05 0.00 0.00 3.27
707 769 2.890311 CCTAGGCTGGTCATAGTGAGAG 59.110 54.545 0.00 0.00 0.00 3.20
708 770 2.541233 AGGCTGGTCATAGTGAGAGT 57.459 50.000 0.00 0.00 0.00 3.24
709 771 3.671740 AGGCTGGTCATAGTGAGAGTA 57.328 47.619 0.00 0.00 0.00 2.59
710 772 3.982516 AGGCTGGTCATAGTGAGAGTAA 58.017 45.455 0.00 0.00 0.00 2.24
711 773 3.702045 AGGCTGGTCATAGTGAGAGTAAC 59.298 47.826 0.00 0.00 0.00 2.50
712 774 3.447586 GGCTGGTCATAGTGAGAGTAACA 59.552 47.826 0.00 0.00 0.00 2.41
713 775 4.100189 GGCTGGTCATAGTGAGAGTAACAT 59.900 45.833 0.00 0.00 0.00 2.71
714 776 5.302059 GGCTGGTCATAGTGAGAGTAACATA 59.698 44.000 0.00 0.00 0.00 2.29
715 777 6.442952 GCTGGTCATAGTGAGAGTAACATAG 58.557 44.000 0.00 0.00 0.00 2.23
716 778 6.515862 GCTGGTCATAGTGAGAGTAACATAGG 60.516 46.154 0.00 0.00 0.00 2.57
717 779 6.432581 TGGTCATAGTGAGAGTAACATAGGT 58.567 40.000 0.00 0.00 0.00 3.08
718 780 7.580007 TGGTCATAGTGAGAGTAACATAGGTA 58.420 38.462 0.00 0.00 0.00 3.08
719 781 7.720074 TGGTCATAGTGAGAGTAACATAGGTAG 59.280 40.741 0.00 0.00 0.00 3.18
720 782 7.720515 GGTCATAGTGAGAGTAACATAGGTAGT 59.279 40.741 0.00 0.00 0.00 2.73
721 783 9.775854 GTCATAGTGAGAGTAACATAGGTAGTA 57.224 37.037 0.00 0.00 0.00 1.82
728 790 9.570468 TGAGAGTAACATAGGTAGTAACATAGG 57.430 37.037 0.00 0.00 30.50 2.57
729 791 9.571816 GAGAGTAACATAGGTAGTAACATAGGT 57.428 37.037 0.00 0.00 38.40 3.08
747 809 8.895141 ACATAGGTAGTAATATAGATGCCACA 57.105 34.615 0.00 0.00 0.00 4.17
748 810 9.494055 ACATAGGTAGTAATATAGATGCCACAT 57.506 33.333 0.00 0.00 0.00 3.21
752 814 9.548631 AGGTAGTAATATAGATGCCACATAAGT 57.451 33.333 0.00 0.00 0.00 2.24
767 829 9.416794 TGCCACATAAGTAAAAATGTTAATGTG 57.583 29.630 0.00 0.00 34.12 3.21
769 831 8.868916 CCACATAAGTAAAAATGTTAATGTGGC 58.131 33.333 15.77 0.00 45.48 5.01
770 832 9.416794 CACATAAGTAAAAATGTTAATGTGGCA 57.583 29.630 0.00 0.00 34.12 4.92
771 833 9.988815 ACATAAGTAAAAATGTTAATGTGGCAA 57.011 25.926 0.00 0.00 32.43 4.52
775 837 9.691362 AAGTAAAAATGTTAATGTGGCAAGTAG 57.309 29.630 0.00 0.00 0.00 2.57
776 838 8.856103 AGTAAAAATGTTAATGTGGCAAGTAGT 58.144 29.630 0.00 0.00 0.00 2.73
777 839 9.471084 GTAAAAATGTTAATGTGGCAAGTAGTT 57.529 29.630 0.00 0.00 0.00 2.24
781 843 9.638239 AAATGTTAATGTGGCAAGTAGTTAATG 57.362 29.630 0.00 0.00 0.00 1.90
782 844 7.987750 TGTTAATGTGGCAAGTAGTTAATGA 57.012 32.000 0.00 0.00 0.00 2.57
783 845 8.039603 TGTTAATGTGGCAAGTAGTTAATGAG 57.960 34.615 0.00 0.00 0.00 2.90
784 846 7.120579 TGTTAATGTGGCAAGTAGTTAATGAGG 59.879 37.037 0.00 0.00 0.00 3.86
785 847 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
786 848 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
787 849 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
788 850 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
789 851 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
790 852 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
791 853 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
792 854 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
793 855 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
794 856 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
795 857 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
796 858 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
797 859 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
798 860 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
799 861 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
800 862 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
801 863 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
802 864 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
803 865 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
804 866 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
805 867 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
806 868 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
807 869 7.069986 AGGAGAGAGGCAAATAGAGTAACATA 58.930 38.462 0.00 0.00 0.00 2.29
808 870 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
809 871 8.371699 GGAGAGAGGCAAATAGAGTAACATAAT 58.628 37.037 0.00 0.00 0.00 1.28
828 890 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
829 891 5.862924 AATATGTTACCATCACATAGCGC 57.137 39.130 0.00 0.00 39.83 5.92
830 892 2.979814 TGTTACCATCACATAGCGCT 57.020 45.000 17.26 17.26 0.00 5.92
831 893 3.260475 TGTTACCATCACATAGCGCTT 57.740 42.857 18.68 0.00 0.00 4.68
832 894 3.605634 TGTTACCATCACATAGCGCTTT 58.394 40.909 18.68 4.25 0.00 3.51
833 895 4.006989 TGTTACCATCACATAGCGCTTTT 58.993 39.130 18.68 0.00 0.00 2.27
834 896 4.094294 TGTTACCATCACATAGCGCTTTTC 59.906 41.667 18.68 0.00 0.00 2.29
835 897 2.710377 ACCATCACATAGCGCTTTTCA 58.290 42.857 18.68 0.00 0.00 2.69
836 898 3.081061 ACCATCACATAGCGCTTTTCAA 58.919 40.909 18.68 0.00 0.00 2.69
837 899 3.696051 ACCATCACATAGCGCTTTTCAAT 59.304 39.130 18.68 0.00 0.00 2.57
838 900 4.039703 CCATCACATAGCGCTTTTCAATG 58.960 43.478 18.68 15.83 0.00 2.82
839 901 3.135414 TCACATAGCGCTTTTCAATGC 57.865 42.857 18.68 0.00 0.00 3.56
840 902 2.487372 TCACATAGCGCTTTTCAATGCA 59.513 40.909 18.68 0.00 0.00 3.96
841 903 3.057666 TCACATAGCGCTTTTCAATGCAA 60.058 39.130 18.68 1.39 0.00 4.08
842 904 3.674281 CACATAGCGCTTTTCAATGCAAA 59.326 39.130 18.68 0.00 0.00 3.68
843 905 4.150274 CACATAGCGCTTTTCAATGCAAAA 59.850 37.500 18.68 0.00 0.00 2.44
844 906 4.931002 ACATAGCGCTTTTCAATGCAAAAT 59.069 33.333 18.68 0.00 0.00 1.82
845 907 3.799137 AGCGCTTTTCAATGCAAAATG 57.201 38.095 2.64 0.00 0.00 2.32
846 908 3.391965 AGCGCTTTTCAATGCAAAATGA 58.608 36.364 2.64 0.00 0.00 2.57
847 909 3.430895 AGCGCTTTTCAATGCAAAATGAG 59.569 39.130 2.64 0.00 0.00 2.90
848 910 3.184986 GCGCTTTTCAATGCAAAATGAGT 59.815 39.130 0.00 0.00 0.00 3.41
849 911 4.664891 GCGCTTTTCAATGCAAAATGAGTC 60.665 41.667 0.00 0.00 0.00 3.36
850 912 4.682860 CGCTTTTCAATGCAAAATGAGTCT 59.317 37.500 0.00 0.00 0.00 3.24
851 913 5.858049 CGCTTTTCAATGCAAAATGAGTCTA 59.142 36.000 0.00 0.00 0.00 2.59
852 914 6.183359 CGCTTTTCAATGCAAAATGAGTCTAC 60.183 38.462 0.00 0.00 0.00 2.59
853 915 6.642131 GCTTTTCAATGCAAAATGAGTCTACA 59.358 34.615 0.00 0.00 0.00 2.74
854 916 7.169645 GCTTTTCAATGCAAAATGAGTCTACAA 59.830 33.333 0.00 0.00 0.00 2.41
855 917 8.578308 TTTTCAATGCAAAATGAGTCTACAAG 57.422 30.769 0.00 0.00 0.00 3.16
856 918 7.509141 TTCAATGCAAAATGAGTCTACAAGA 57.491 32.000 0.00 0.00 0.00 3.02
857 919 6.902341 TCAATGCAAAATGAGTCTACAAGAC 58.098 36.000 0.00 0.00 45.38 3.01
873 935 9.546909 GTCTACAAGACAATAAATGAACATGTG 57.453 33.333 0.00 0.00 44.45 3.21
874 936 9.283768 TCTACAAGACAATAAATGAACATGTGT 57.716 29.630 0.00 0.00 0.00 3.72
877 939 9.844790 ACAAGACAATAAATGAACATGTGTATG 57.155 29.630 0.00 0.00 40.24 2.39
897 959 9.582431 GTGTATGTTACTACACATATGACACTT 57.418 33.333 10.38 0.00 46.94 3.16
898 960 9.797556 TGTATGTTACTACACATATGACACTTC 57.202 33.333 10.38 0.00 40.85 3.01
899 961 9.245962 GTATGTTACTACACATATGACACTTCC 57.754 37.037 10.38 0.00 40.85 3.46
900 962 6.636705 TGTTACTACACATATGACACTTCCC 58.363 40.000 10.38 0.00 0.00 3.97
901 963 6.211785 TGTTACTACACATATGACACTTCCCA 59.788 38.462 10.38 0.00 0.00 4.37
902 964 5.086104 ACTACACATATGACACTTCCCAC 57.914 43.478 10.38 0.00 0.00 4.61
903 965 4.777896 ACTACACATATGACACTTCCCACT 59.222 41.667 10.38 0.00 0.00 4.00
904 966 5.955959 ACTACACATATGACACTTCCCACTA 59.044 40.000 10.38 0.00 0.00 2.74
905 967 5.957771 ACACATATGACACTTCCCACTAT 57.042 39.130 10.38 0.00 0.00 2.12
906 968 7.783119 ACTACACATATGACACTTCCCACTATA 59.217 37.037 10.38 0.00 0.00 1.31
907 969 7.432148 ACACATATGACACTTCCCACTATAA 57.568 36.000 10.38 0.00 0.00 0.98
908 970 7.500992 ACACATATGACACTTCCCACTATAAG 58.499 38.462 10.38 0.00 0.00 1.73
909 971 6.931281 CACATATGACACTTCCCACTATAAGG 59.069 42.308 10.38 0.00 0.00 2.69
911 973 3.798515 TGACACTTCCCACTATAAGGGT 58.201 45.455 9.21 0.00 46.82 4.34
912 974 4.950361 TGACACTTCCCACTATAAGGGTA 58.050 43.478 9.21 0.63 46.82 3.69
913 975 4.960469 TGACACTTCCCACTATAAGGGTAG 59.040 45.833 12.42 12.42 46.82 3.18
919 981 7.672122 CTTCCCACTATAAGGGTAGTAACTT 57.328 40.000 9.21 0.00 46.82 2.66
920 982 8.773033 CTTCCCACTATAAGGGTAGTAACTTA 57.227 38.462 9.21 0.00 46.82 2.24
921 983 8.773033 TTCCCACTATAAGGGTAGTAACTTAG 57.227 38.462 9.21 0.00 46.82 2.18
922 984 8.117870 TCCCACTATAAGGGTAGTAACTTAGA 57.882 38.462 9.21 0.00 46.82 2.10
923 985 8.223330 TCCCACTATAAGGGTAGTAACTTAGAG 58.777 40.741 12.49 12.49 46.82 2.43
924 986 8.003629 CCCACTATAAGGGTAGTAACTTAGAGT 58.996 40.741 13.38 13.38 46.66 3.24
932 994 9.987726 AAGGGTAGTAACTTAGAGTAGTAACAT 57.012 33.333 0.00 0.00 0.00 2.71
1195 1266 1.323271 TTCCCAGGTGAGCTCGCTAG 61.323 60.000 25.54 17.58 0.00 3.42
1199 1270 0.814457 CAGGTGAGCTCGCTAGTTCT 59.186 55.000 25.54 11.74 34.28 3.01
1234 1308 0.391793 TATCGTTGCGGTGATGCCAA 60.392 50.000 0.00 0.00 36.97 4.52
1245 1319 2.550855 GGTGATGCCAACTGAACTGAGA 60.551 50.000 0.00 0.00 37.17 3.27
1272 1346 3.722295 CGTTTGATGGGCGTGCGT 61.722 61.111 0.00 0.00 0.00 5.24
1493 1567 2.503061 CTCATGTCCGAGCTGGGG 59.497 66.667 15.52 4.35 38.76 4.96
1798 1872 4.894114 TCAACCTGTAGGATTAGTAGGCTC 59.106 45.833 4.64 0.00 38.94 4.70
1849 1927 1.901464 TTTTCCCGTTCAGCTGGCC 60.901 57.895 15.13 0.00 0.00 5.36
1853 1931 2.281761 CCGTTCAGCTGGCCTTGT 60.282 61.111 15.13 0.00 0.00 3.16
1866 1944 2.107378 TGGCCTTGTAATCACTGAACCA 59.893 45.455 3.32 0.00 0.00 3.67
1867 1945 3.245229 TGGCCTTGTAATCACTGAACCAT 60.245 43.478 3.32 0.00 0.00 3.55
1868 1946 3.129287 GGCCTTGTAATCACTGAACCATG 59.871 47.826 0.00 0.00 0.00 3.66
1949 2028 6.791867 ACAAATGTCATACAGTAGCCTCTA 57.208 37.500 0.00 0.00 0.00 2.43
1951 2030 5.461032 AATGTCATACAGTAGCCTCTAGC 57.539 43.478 0.00 0.00 44.25 3.42
1966 2045 4.142687 GCCTCTAGCTTTTAACGCATCAAA 60.143 41.667 0.00 0.00 38.99 2.69
1973 2052 3.694535 TTTAACGCATCAAACGGTTGT 57.305 38.095 13.90 0.00 36.07 3.32
1990 2069 2.376808 TGTTGTTTGTTTGCCAGTGG 57.623 45.000 4.20 4.20 0.00 4.00
2046 2125 6.925718 GCACTATGAATGATAGCAGAACAGTA 59.074 38.462 0.00 0.00 38.11 2.74
2079 2158 5.168569 CGTTTGGAATCTTAGCAGTACAGA 58.831 41.667 0.00 0.00 0.00 3.41
2080 2159 5.637810 CGTTTGGAATCTTAGCAGTACAGAA 59.362 40.000 0.00 0.00 0.00 3.02
2118 2197 4.152045 GGCAAGAAATATCGCTCTCAGATG 59.848 45.833 0.00 0.00 0.00 2.90
2136 2215 3.385111 AGATGACAGAAACCTCCCGATAC 59.615 47.826 0.00 0.00 0.00 2.24
2146 2225 6.373495 AGAAACCTCCCGATACACAAATAAAC 59.627 38.462 0.00 0.00 0.00 2.01
2236 2362 6.047870 TCAAAATAGCATTGCACAGTTTTGT 58.952 32.000 23.84 4.47 36.78 2.83
2258 2384 6.380995 TGTTTATTTGAGTCACACATGCATC 58.619 36.000 0.00 0.00 0.00 3.91
2420 2548 1.017177 TGCAGTTTTACTAGCCGCCG 61.017 55.000 0.00 0.00 0.00 6.46
2444 2572 6.074516 CGTTTCACGATTCTAGACAGAAAACA 60.075 38.462 0.00 0.00 46.05 2.83
2487 2615 1.950909 CTTTGTCCCGGCAGTTTACAA 59.049 47.619 0.00 0.00 0.00 2.41
2493 2621 1.335872 CCCGGCAGTTTACAAGCTTTG 60.336 52.381 0.00 0.00 0.00 2.77
2564 2692 5.617751 CGGTTTTATTCCTCTGCAGTGAAAG 60.618 44.000 17.19 5.26 0.00 2.62
2566 2694 2.503895 ATTCCTCTGCAGTGAAAGGG 57.496 50.000 17.19 9.21 0.00 3.95
2571 2699 2.310538 CTCTGCAGTGAAAGGGGTTTT 58.689 47.619 14.67 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.912371 GCTGCACGTTGACTTAGCCC 61.912 60.000 0.00 0.00 0.00 5.19
2 3 1.130613 CGCTGCACGTTGACTTAGC 59.869 57.895 0.00 0.00 36.87 3.09
3 4 1.130613 GCGCTGCACGTTGACTTAG 59.869 57.895 0.00 0.00 46.11 2.18
4 5 2.314647 GGCGCTGCACGTTGACTTA 61.315 57.895 7.64 0.00 46.11 2.24
5 6 2.709125 TAGGCGCTGCACGTTGACTT 62.709 55.000 7.64 0.00 46.11 3.01
6 7 2.709125 TTAGGCGCTGCACGTTGACT 62.709 55.000 7.64 0.00 46.11 3.41
7 8 2.227968 CTTAGGCGCTGCACGTTGAC 62.228 60.000 7.64 0.00 46.11 3.18
8 9 2.027073 CTTAGGCGCTGCACGTTGA 61.027 57.895 7.64 0.00 46.11 3.18
9 10 2.027073 TCTTAGGCGCTGCACGTTG 61.027 57.895 7.64 0.00 46.11 4.10
10 11 2.027625 GTCTTAGGCGCTGCACGTT 61.028 57.895 7.64 3.05 46.11 3.99
11 12 2.432628 GTCTTAGGCGCTGCACGT 60.433 61.111 7.64 0.00 46.11 4.49
13 14 2.730672 CGTGTCTTAGGCGCTGCAC 61.731 63.158 7.64 6.89 0.00 4.57
14 15 2.432456 CGTGTCTTAGGCGCTGCA 60.432 61.111 7.64 0.00 0.00 4.41
15 16 3.188786 CCGTGTCTTAGGCGCTGC 61.189 66.667 7.64 0.00 0.00 5.25
16 17 2.509336 CCCGTGTCTTAGGCGCTG 60.509 66.667 7.64 0.00 0.00 5.18
17 18 4.452733 GCCCGTGTCTTAGGCGCT 62.453 66.667 7.64 0.00 36.84 5.92
20 21 3.072486 TAGCGCCCGTGTCTTAGGC 62.072 63.158 2.29 0.00 43.53 3.93
21 22 1.226888 GTAGCGCCCGTGTCTTAGG 60.227 63.158 2.29 0.00 0.00 2.69
22 23 0.108992 TTGTAGCGCCCGTGTCTTAG 60.109 55.000 2.29 0.00 0.00 2.18
23 24 0.533491 ATTGTAGCGCCCGTGTCTTA 59.467 50.000 2.29 0.00 0.00 2.10
24 25 0.533491 TATTGTAGCGCCCGTGTCTT 59.467 50.000 2.29 0.00 0.00 3.01
25 26 0.750850 ATATTGTAGCGCCCGTGTCT 59.249 50.000 2.29 0.00 0.00 3.41
26 27 2.056577 GTATATTGTAGCGCCCGTGTC 58.943 52.381 2.29 0.00 0.00 3.67
27 28 1.409790 TGTATATTGTAGCGCCCGTGT 59.590 47.619 2.29 0.00 0.00 4.49
28 29 1.790623 GTGTATATTGTAGCGCCCGTG 59.209 52.381 2.29 0.00 0.00 4.94
29 30 1.409790 TGTGTATATTGTAGCGCCCGT 59.590 47.619 2.29 0.00 0.00 5.28
30 31 2.058798 CTGTGTATATTGTAGCGCCCG 58.941 52.381 2.29 0.00 0.00 6.13
31 32 2.800544 CACTGTGTATATTGTAGCGCCC 59.199 50.000 2.29 0.00 0.00 6.13
32 33 2.221055 GCACTGTGTATATTGTAGCGCC 59.779 50.000 2.29 0.00 0.00 6.53
33 34 2.097396 CGCACTGTGTATATTGTAGCGC 60.097 50.000 9.86 0.00 36.16 5.92
34 35 2.471370 CCGCACTGTGTATATTGTAGCG 59.529 50.000 9.86 0.00 42.00 4.26
35 36 2.221055 GCCGCACTGTGTATATTGTAGC 59.779 50.000 9.86 0.00 0.00 3.58
36 37 2.471370 CGCCGCACTGTGTATATTGTAG 59.529 50.000 9.86 0.00 0.00 2.74
37 38 2.465855 CGCCGCACTGTGTATATTGTA 58.534 47.619 9.86 0.00 0.00 2.41
38 39 1.286501 CGCCGCACTGTGTATATTGT 58.713 50.000 9.86 0.00 0.00 2.71
39 40 0.042188 GCGCCGCACTGTGTATATTG 60.042 55.000 3.15 0.00 0.00 1.90
40 41 1.157870 GGCGCCGCACTGTGTATATT 61.158 55.000 12.58 0.00 0.00 1.28
41 42 1.594293 GGCGCCGCACTGTGTATAT 60.594 57.895 12.58 0.00 0.00 0.86
42 43 1.385756 TAGGCGCCGCACTGTGTATA 61.386 55.000 23.20 0.00 0.00 1.47
43 44 2.233605 TTAGGCGCCGCACTGTGTAT 62.234 55.000 23.20 0.95 0.00 2.29
44 45 2.829043 CTTAGGCGCCGCACTGTGTA 62.829 60.000 23.20 1.52 0.00 2.90
45 46 4.308458 TTAGGCGCCGCACTGTGT 62.308 61.111 23.20 2.71 0.00 3.72
46 47 3.490759 CTTAGGCGCCGCACTGTG 61.491 66.667 23.20 2.76 0.00 3.66
47 48 3.934391 GACTTAGGCGCCGCACTGT 62.934 63.158 23.20 16.48 0.00 3.55
48 49 3.188786 GACTTAGGCGCCGCACTG 61.189 66.667 23.20 13.24 0.00 3.66
49 50 1.601419 TAAGACTTAGGCGCCGCACT 61.601 55.000 23.20 14.29 0.00 4.40
50 51 1.146358 CTAAGACTTAGGCGCCGCAC 61.146 60.000 23.20 12.15 0.00 5.34
51 52 1.141019 CTAAGACTTAGGCGCCGCA 59.859 57.895 23.20 10.73 0.00 5.69
52 53 1.591863 CCTAAGACTTAGGCGCCGC 60.592 63.158 24.94 0.00 45.72 6.53
53 54 4.732106 CCTAAGACTTAGGCGCCG 57.268 61.111 24.94 9.91 45.72 6.46
59 60 1.134965 ACTGCAGCGCCTAAGACTTAG 60.135 52.381 15.27 14.35 0.00 2.18
60 61 0.895530 ACTGCAGCGCCTAAGACTTA 59.104 50.000 15.27 0.00 0.00 2.24
61 62 0.671781 CACTGCAGCGCCTAAGACTT 60.672 55.000 15.27 0.00 0.00 3.01
62 63 1.079543 CACTGCAGCGCCTAAGACT 60.080 57.895 15.27 0.00 0.00 3.24
63 64 0.951040 AACACTGCAGCGCCTAAGAC 60.951 55.000 15.27 0.00 0.00 3.01
64 65 0.950555 CAACACTGCAGCGCCTAAGA 60.951 55.000 15.27 0.00 0.00 2.10
65 66 1.230635 ACAACACTGCAGCGCCTAAG 61.231 55.000 15.27 0.69 0.00 2.18
66 67 1.227823 ACAACACTGCAGCGCCTAA 60.228 52.632 15.27 0.00 0.00 2.69
67 68 1.667830 GACAACACTGCAGCGCCTA 60.668 57.895 15.27 0.00 0.00 3.93
68 69 2.974698 GACAACACTGCAGCGCCT 60.975 61.111 15.27 0.00 0.00 5.52
69 70 2.974698 AGACAACACTGCAGCGCC 60.975 61.111 15.27 0.00 0.00 6.53
70 71 2.250485 CAGACAACACTGCAGCGC 59.750 61.111 15.27 0.00 0.00 5.92
71 72 1.277739 CACAGACAACACTGCAGCG 59.722 57.895 15.27 6.98 41.06 5.18
72 73 1.650912 CCACAGACAACACTGCAGC 59.349 57.895 15.27 0.00 41.06 5.25
73 74 1.168407 CCCCACAGACAACACTGCAG 61.168 60.000 13.48 13.48 41.06 4.41
74 75 1.152984 CCCCACAGACAACACTGCA 60.153 57.895 0.00 0.00 41.06 4.41
75 76 2.555547 GCCCCACAGACAACACTGC 61.556 63.158 0.00 0.00 41.06 4.40
76 77 1.898574 GGCCCCACAGACAACACTG 60.899 63.158 0.00 0.00 42.78 3.66
77 78 2.343475 CTGGCCCCACAGACAACACT 62.343 60.000 0.00 0.00 40.97 3.55
78 79 1.898574 CTGGCCCCACAGACAACAC 60.899 63.158 0.00 0.00 40.97 3.32
79 80 2.515398 CTGGCCCCACAGACAACA 59.485 61.111 0.00 0.00 40.97 3.33
80 81 2.282462 CCTGGCCCCACAGACAAC 60.282 66.667 0.00 0.00 40.97 3.32
81 82 3.579302 CCCTGGCCCCACAGACAA 61.579 66.667 0.00 0.00 40.97 3.18
102 103 3.129502 CACATCCTGCCAGCGTGG 61.130 66.667 0.25 0.25 41.55 4.94
103 104 3.807538 GCACATCCTGCCAGCGTG 61.808 66.667 3.57 3.57 40.42 5.34
104 105 3.848301 TTGCACATCCTGCCAGCGT 62.848 57.895 0.00 0.00 46.51 5.07
105 106 3.057548 TTGCACATCCTGCCAGCG 61.058 61.111 0.00 0.00 46.51 5.18
106 107 2.570181 GTTGCACATCCTGCCAGC 59.430 61.111 0.00 0.00 46.51 4.85
107 108 2.872557 CGTTGCACATCCTGCCAG 59.127 61.111 0.00 0.00 46.51 4.85
108 109 3.364441 GCGTTGCACATCCTGCCA 61.364 61.111 0.00 0.00 46.51 4.92
109 110 4.120331 GGCGTTGCACATCCTGCC 62.120 66.667 0.00 0.00 46.51 4.85
111 112 0.729116 CTTAGGCGTTGCACATCCTG 59.271 55.000 9.42 0.00 0.00 3.86
112 113 0.324943 ACTTAGGCGTTGCACATCCT 59.675 50.000 5.32 5.32 0.00 3.24
113 114 0.447801 CACTTAGGCGTTGCACATCC 59.552 55.000 0.00 0.00 0.00 3.51
114 115 1.438651 TCACTTAGGCGTTGCACATC 58.561 50.000 0.00 0.00 0.00 3.06
115 116 1.739466 CATCACTTAGGCGTTGCACAT 59.261 47.619 0.00 0.00 0.00 3.21
116 117 1.155889 CATCACTTAGGCGTTGCACA 58.844 50.000 0.00 0.00 0.00 4.57
117 118 0.447801 CCATCACTTAGGCGTTGCAC 59.552 55.000 0.00 0.00 0.00 4.57
118 119 0.676466 CCCATCACTTAGGCGTTGCA 60.676 55.000 0.00 0.00 0.00 4.08
119 120 1.993369 GCCCATCACTTAGGCGTTGC 61.993 60.000 0.00 0.00 36.84 4.17
120 121 2.098293 GCCCATCACTTAGGCGTTG 58.902 57.895 0.00 0.00 36.84 4.10
121 122 4.637771 GCCCATCACTTAGGCGTT 57.362 55.556 0.00 0.00 36.84 4.84
124 125 2.182842 CAGCGCCCATCACTTAGGC 61.183 63.158 2.29 0.00 43.53 3.93
125 126 2.182842 GCAGCGCCCATCACTTAGG 61.183 63.158 2.29 0.00 0.00 2.69
126 127 1.450134 TGCAGCGCCCATCACTTAG 60.450 57.895 2.29 0.00 0.00 2.18
127 128 1.745115 GTGCAGCGCCCATCACTTA 60.745 57.895 2.29 0.00 0.00 2.24
128 129 3.058160 GTGCAGCGCCCATCACTT 61.058 61.111 2.29 0.00 0.00 3.16
129 130 4.334118 TGTGCAGCGCCCATCACT 62.334 61.111 2.29 0.00 0.00 3.41
130 131 3.807538 CTGTGCAGCGCCCATCAC 61.808 66.667 2.29 7.89 0.00 3.06
131 132 2.857575 CTACTGTGCAGCGCCCATCA 62.858 60.000 2.29 2.59 0.00 3.07
132 133 2.125147 TACTGTGCAGCGCCCATC 60.125 61.111 2.29 0.00 0.00 3.51
133 134 2.124983 CTACTGTGCAGCGCCCAT 60.125 61.111 2.29 0.00 0.00 4.00
134 135 4.393155 CCTACTGTGCAGCGCCCA 62.393 66.667 2.29 0.00 0.00 5.36
136 137 4.394712 ACCCTACTGTGCAGCGCC 62.395 66.667 2.29 0.00 0.00 6.53
137 138 3.121030 CACCCTACTGTGCAGCGC 61.121 66.667 0.00 0.00 0.00 5.92
172 173 3.723348 GACCCTTTCGTGTGGCGC 61.723 66.667 0.00 0.00 41.07 6.53
173 174 2.280524 TGACCCTTTCGTGTGGCG 60.281 61.111 0.00 0.00 43.01 5.69
174 175 2.617274 GCTGACCCTTTCGTGTGGC 61.617 63.158 0.00 0.00 0.00 5.01
175 176 2.317609 CGCTGACCCTTTCGTGTGG 61.318 63.158 0.00 0.00 0.00 4.17
176 177 2.317609 CCGCTGACCCTTTCGTGTG 61.318 63.158 0.00 0.00 0.00 3.82
177 178 2.030562 CCGCTGACCCTTTCGTGT 59.969 61.111 0.00 0.00 0.00 4.49
178 179 1.738099 CTCCGCTGACCCTTTCGTG 60.738 63.158 0.00 0.00 0.00 4.35
179 180 2.207924 ACTCCGCTGACCCTTTCGT 61.208 57.895 0.00 0.00 0.00 3.85
180 181 1.738099 CACTCCGCTGACCCTTTCG 60.738 63.158 0.00 0.00 0.00 3.46
181 182 0.034896 TTCACTCCGCTGACCCTTTC 59.965 55.000 0.00 0.00 0.00 2.62
182 183 0.472471 TTTCACTCCGCTGACCCTTT 59.528 50.000 0.00 0.00 0.00 3.11
183 184 0.693049 ATTTCACTCCGCTGACCCTT 59.307 50.000 0.00 0.00 0.00 3.95
184 185 0.693049 AATTTCACTCCGCTGACCCT 59.307 50.000 0.00 0.00 0.00 4.34
185 186 1.534729 AAATTTCACTCCGCTGACCC 58.465 50.000 0.00 0.00 0.00 4.46
186 187 3.643159 AAAAATTTCACTCCGCTGACC 57.357 42.857 0.00 0.00 0.00 4.02
204 205 4.928615 CACAAACTGACCTGCTTTCAAAAA 59.071 37.500 0.00 0.00 0.00 1.94
205 206 4.219507 TCACAAACTGACCTGCTTTCAAAA 59.780 37.500 0.00 0.00 0.00 2.44
206 207 3.761218 TCACAAACTGACCTGCTTTCAAA 59.239 39.130 0.00 0.00 0.00 2.69
207 208 3.351740 TCACAAACTGACCTGCTTTCAA 58.648 40.909 0.00 0.00 0.00 2.69
208 209 2.997980 TCACAAACTGACCTGCTTTCA 58.002 42.857 0.00 0.00 0.00 2.69
209 210 4.574599 ATTCACAAACTGACCTGCTTTC 57.425 40.909 0.00 0.00 0.00 2.62
210 211 4.402155 TCAATTCACAAACTGACCTGCTTT 59.598 37.500 0.00 0.00 0.00 3.51
211 212 3.953612 TCAATTCACAAACTGACCTGCTT 59.046 39.130 0.00 0.00 0.00 3.91
212 213 3.554934 TCAATTCACAAACTGACCTGCT 58.445 40.909 0.00 0.00 0.00 4.24
213 214 3.988379 TCAATTCACAAACTGACCTGC 57.012 42.857 0.00 0.00 0.00 4.85
214 215 7.086376 CCTAAATCAATTCACAAACTGACCTG 58.914 38.462 0.00 0.00 0.00 4.00
215 216 6.294731 GCCTAAATCAATTCACAAACTGACCT 60.295 38.462 0.00 0.00 0.00 3.85
216 217 5.863935 GCCTAAATCAATTCACAAACTGACC 59.136 40.000 0.00 0.00 0.00 4.02
217 218 5.863935 GGCCTAAATCAATTCACAAACTGAC 59.136 40.000 0.00 0.00 0.00 3.51
218 219 5.774690 AGGCCTAAATCAATTCACAAACTGA 59.225 36.000 1.29 0.00 0.00 3.41
219 220 6.029346 AGGCCTAAATCAATTCACAAACTG 57.971 37.500 1.29 0.00 0.00 3.16
220 221 5.774690 TGAGGCCTAAATCAATTCACAAACT 59.225 36.000 4.42 0.00 0.00 2.66
221 222 6.024552 TGAGGCCTAAATCAATTCACAAAC 57.975 37.500 4.42 0.00 0.00 2.93
222 223 5.185635 CCTGAGGCCTAAATCAATTCACAAA 59.814 40.000 4.42 0.00 0.00 2.83
223 224 4.706476 CCTGAGGCCTAAATCAATTCACAA 59.294 41.667 4.42 0.00 0.00 3.33
224 225 4.263905 ACCTGAGGCCTAAATCAATTCACA 60.264 41.667 4.42 0.00 0.00 3.58
225 226 4.273318 ACCTGAGGCCTAAATCAATTCAC 58.727 43.478 4.42 0.00 0.00 3.18
226 227 4.018506 TGACCTGAGGCCTAAATCAATTCA 60.019 41.667 4.42 2.02 0.00 2.57
227 228 4.526970 TGACCTGAGGCCTAAATCAATTC 58.473 43.478 4.42 0.00 0.00 2.17
228 229 4.591321 TGACCTGAGGCCTAAATCAATT 57.409 40.909 4.42 0.00 0.00 2.32
229 230 4.591321 TTGACCTGAGGCCTAAATCAAT 57.409 40.909 4.42 0.00 0.00 2.57
230 231 4.380843 TTTGACCTGAGGCCTAAATCAA 57.619 40.909 4.42 8.93 0.00 2.57
231 232 4.591321 ATTTGACCTGAGGCCTAAATCA 57.409 40.909 4.42 1.71 0.00 2.57
232 233 6.016777 CACATATTTGACCTGAGGCCTAAATC 60.017 42.308 4.42 0.00 0.00 2.17
233 234 5.829924 CACATATTTGACCTGAGGCCTAAAT 59.170 40.000 4.42 9.82 0.00 1.40
234 235 5.045213 TCACATATTTGACCTGAGGCCTAAA 60.045 40.000 4.42 0.89 0.00 1.85
235 236 4.473196 TCACATATTTGACCTGAGGCCTAA 59.527 41.667 4.42 0.00 0.00 2.69
236 237 4.037222 TCACATATTTGACCTGAGGCCTA 58.963 43.478 4.42 0.00 0.00 3.93
237 238 2.846206 TCACATATTTGACCTGAGGCCT 59.154 45.455 3.86 3.86 0.00 5.19
238 239 3.281727 TCACATATTTGACCTGAGGCC 57.718 47.619 0.00 0.00 0.00 5.19
239 240 5.841957 ATTTCACATATTTGACCTGAGGC 57.158 39.130 0.00 0.00 0.00 4.70
240 241 8.571336 GGATAATTTCACATATTTGACCTGAGG 58.429 37.037 0.00 0.00 0.00 3.86
241 242 8.571336 GGGATAATTTCACATATTTGACCTGAG 58.429 37.037 0.00 0.00 0.00 3.35
242 243 7.505585 GGGGATAATTTCACATATTTGACCTGA 59.494 37.037 0.00 0.00 0.00 3.86
243 244 7.522073 CGGGGATAATTTCACATATTTGACCTG 60.522 40.741 0.00 0.00 0.00 4.00
244 245 6.490040 CGGGGATAATTTCACATATTTGACCT 59.510 38.462 0.00 0.00 0.00 3.85
245 246 6.264518 ACGGGGATAATTTCACATATTTGACC 59.735 38.462 0.00 0.00 0.00 4.02
246 247 7.138736 CACGGGGATAATTTCACATATTTGAC 58.861 38.462 0.00 0.00 0.00 3.18
247 248 6.264292 CCACGGGGATAATTTCACATATTTGA 59.736 38.462 0.00 0.00 35.59 2.69
248 249 6.040391 ACCACGGGGATAATTTCACATATTTG 59.960 38.462 12.96 0.00 38.05 2.32
249 250 6.133356 ACCACGGGGATAATTTCACATATTT 58.867 36.000 12.96 0.00 38.05 1.40
250 251 5.701224 ACCACGGGGATAATTTCACATATT 58.299 37.500 12.96 0.00 38.05 1.28
251 252 5.319043 ACCACGGGGATAATTTCACATAT 57.681 39.130 12.96 0.00 38.05 1.78
252 253 4.781775 ACCACGGGGATAATTTCACATA 57.218 40.909 12.96 0.00 38.05 2.29
253 254 3.662759 ACCACGGGGATAATTTCACAT 57.337 42.857 12.96 0.00 38.05 3.21
254 255 3.679361 CGTACCACGGGGATAATTTCACA 60.679 47.826 12.96 0.00 38.08 3.58
255 256 2.867975 CGTACCACGGGGATAATTTCAC 59.132 50.000 12.96 0.00 38.08 3.18
256 257 2.742530 GCGTACCACGGGGATAATTTCA 60.743 50.000 12.96 0.00 42.82 2.69
257 258 1.869132 GCGTACCACGGGGATAATTTC 59.131 52.381 12.96 0.00 42.82 2.17
258 259 1.957668 GCGTACCACGGGGATAATTT 58.042 50.000 12.96 0.00 42.82 1.82
259 260 3.692424 GCGTACCACGGGGATAATT 57.308 52.632 12.96 0.00 42.82 1.40
267 268 4.670606 GTACTACGCGTACCACGG 57.329 61.111 16.41 7.94 42.82 4.94
272 273 3.962481 CAGATAAACGGTACTACGCGTAC 59.038 47.826 16.41 8.67 46.22 3.67
273 274 3.868661 TCAGATAAACGGTACTACGCGTA 59.131 43.478 19.40 19.40 37.37 4.42
274 275 2.677836 TCAGATAAACGGTACTACGCGT 59.322 45.455 19.17 19.17 37.37 6.01
275 276 3.323729 TCAGATAAACGGTACTACGCG 57.676 47.619 3.53 3.53 37.37 6.01
276 277 3.979495 CCATCAGATAAACGGTACTACGC 59.021 47.826 0.00 0.00 37.37 4.42
277 278 4.974275 CACCATCAGATAAACGGTACTACG 59.026 45.833 0.00 0.00 40.31 3.51
278 279 5.163478 ACCACCATCAGATAAACGGTACTAC 60.163 44.000 0.00 0.00 0.00 2.73
279 280 4.957954 ACCACCATCAGATAAACGGTACTA 59.042 41.667 0.00 0.00 0.00 1.82
280 281 3.773119 ACCACCATCAGATAAACGGTACT 59.227 43.478 0.00 0.00 0.00 2.73
281 282 3.869246 CACCACCATCAGATAAACGGTAC 59.131 47.826 0.00 0.00 0.00 3.34
282 283 3.516300 ACACCACCATCAGATAAACGGTA 59.484 43.478 0.00 0.00 0.00 4.02
371 372 3.650139 GTGCGTGGTAATTCTATCGGAT 58.350 45.455 0.00 0.00 0.00 4.18
374 375 2.456989 ACGTGCGTGGTAATTCTATCG 58.543 47.619 0.00 0.00 0.00 2.92
377 386 2.161410 ACGTACGTGCGTGGTAATTCTA 59.839 45.455 30.44 0.00 43.99 2.10
393 402 1.070821 GGCCTTTGGAACGTACGTAC 58.929 55.000 23.12 17.82 0.00 3.67
394 403 0.037419 GGGCCTTTGGAACGTACGTA 60.037 55.000 23.12 2.73 0.00 3.57
434 452 2.034001 GTGACGTGCAACTACTTGTGAC 60.034 50.000 0.00 0.00 31.75 3.67
441 459 2.464189 CGCGTGACGTGCAACTAC 59.536 61.111 5.34 0.00 36.87 2.73
652 714 2.807895 GCGGCTTTACTGCGTCGA 60.808 61.111 0.00 0.00 41.87 4.20
659 721 3.110178 GACACGCGCGGCTTTACT 61.110 61.111 35.22 8.09 0.00 2.24
683 745 0.642710 ACTATGACCAGCCTAGGGGT 59.357 55.000 11.72 10.39 40.96 4.95
684 746 1.051812 CACTATGACCAGCCTAGGGG 58.948 60.000 11.72 6.72 0.00 4.79
685 747 1.967066 CTCACTATGACCAGCCTAGGG 59.033 57.143 11.72 0.00 0.00 3.53
686 748 2.890311 CTCTCACTATGACCAGCCTAGG 59.110 54.545 3.67 3.67 0.00 3.02
687 749 3.561143 ACTCTCACTATGACCAGCCTAG 58.439 50.000 0.00 0.00 0.00 3.02
688 750 3.671740 ACTCTCACTATGACCAGCCTA 57.328 47.619 0.00 0.00 0.00 3.93
689 751 2.541233 ACTCTCACTATGACCAGCCT 57.459 50.000 0.00 0.00 0.00 4.58
690 752 3.447586 TGTTACTCTCACTATGACCAGCC 59.552 47.826 0.00 0.00 0.00 4.85
691 753 4.720649 TGTTACTCTCACTATGACCAGC 57.279 45.455 0.00 0.00 0.00 4.85
692 754 6.547880 ACCTATGTTACTCTCACTATGACCAG 59.452 42.308 0.00 0.00 0.00 4.00
693 755 6.432581 ACCTATGTTACTCTCACTATGACCA 58.567 40.000 0.00 0.00 0.00 4.02
694 756 6.963083 ACCTATGTTACTCTCACTATGACC 57.037 41.667 0.00 0.00 0.00 4.02
695 757 8.680039 ACTACCTATGTTACTCTCACTATGAC 57.320 38.462 0.00 0.00 0.00 3.06
702 764 9.570468 CCTATGTTACTACCTATGTTACTCTCA 57.430 37.037 0.00 0.00 0.00 3.27
703 765 9.571816 ACCTATGTTACTACCTATGTTACTCTC 57.428 37.037 0.00 0.00 0.00 3.20
721 783 9.321532 TGTGGCATCTATATTACTACCTATGTT 57.678 33.333 0.00 0.00 0.00 2.71
722 784 8.895141 TGTGGCATCTATATTACTACCTATGT 57.105 34.615 0.00 0.00 0.00 2.29
726 788 9.548631 ACTTATGTGGCATCTATATTACTACCT 57.451 33.333 0.00 0.00 0.00 3.08
741 803 9.416794 CACATTAACATTTTTACTTATGTGGCA 57.583 29.630 0.00 0.00 35.29 4.92
742 804 8.868916 CCACATTAACATTTTTACTTATGTGGC 58.131 33.333 15.43 0.00 45.48 5.01
744 806 9.416794 TGCCACATTAACATTTTTACTTATGTG 57.583 29.630 0.00 0.00 35.29 3.21
745 807 9.988815 TTGCCACATTAACATTTTTACTTATGT 57.011 25.926 0.00 0.00 36.58 2.29
749 811 9.691362 CTACTTGCCACATTAACATTTTTACTT 57.309 29.630 0.00 0.00 0.00 2.24
750 812 8.856103 ACTACTTGCCACATTAACATTTTTACT 58.144 29.630 0.00 0.00 0.00 2.24
751 813 9.471084 AACTACTTGCCACATTAACATTTTTAC 57.529 29.630 0.00 0.00 0.00 2.01
755 817 9.638239 CATTAACTACTTGCCACATTAACATTT 57.362 29.630 0.00 0.00 0.00 2.32
756 818 9.019656 TCATTAACTACTTGCCACATTAACATT 57.980 29.630 0.00 0.00 0.00 2.71
757 819 8.574251 TCATTAACTACTTGCCACATTAACAT 57.426 30.769 0.00 0.00 0.00 2.71
758 820 7.120579 CCTCATTAACTACTTGCCACATTAACA 59.879 37.037 0.00 0.00 0.00 2.41
759 821 7.335924 TCCTCATTAACTACTTGCCACATTAAC 59.664 37.037 0.00 0.00 0.00 2.01
760 822 7.398829 TCCTCATTAACTACTTGCCACATTAA 58.601 34.615 0.00 0.00 0.00 1.40
761 823 6.953101 TCCTCATTAACTACTTGCCACATTA 58.047 36.000 0.00 0.00 0.00 1.90
762 824 5.815581 TCCTCATTAACTACTTGCCACATT 58.184 37.500 0.00 0.00 0.00 2.71
763 825 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
764 826 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
765 827 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
766 828 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
767 829 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
768 830 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
769 831 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
770 832 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
771 833 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
772 834 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
773 835 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
774 836 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
775 837 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
776 838 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
777 839 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
778 840 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
779 841 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
780 842 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
781 843 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
782 844 5.273208 TGTTACTCTATTTGCCTCTCTCCT 58.727 41.667 0.00 0.00 0.00 3.69
783 845 5.599999 TGTTACTCTATTTGCCTCTCTCC 57.400 43.478 0.00 0.00 0.00 3.71
812 874 4.094294 TGAAAAGCGCTATGTGATGGTAAC 59.906 41.667 12.05 0.00 0.00 2.50
813 875 4.257731 TGAAAAGCGCTATGTGATGGTAA 58.742 39.130 12.05 0.00 0.00 2.85
814 876 3.867857 TGAAAAGCGCTATGTGATGGTA 58.132 40.909 12.05 0.00 0.00 3.25
815 877 2.710377 TGAAAAGCGCTATGTGATGGT 58.290 42.857 12.05 0.00 0.00 3.55
816 878 3.763097 TTGAAAAGCGCTATGTGATGG 57.237 42.857 12.05 0.00 0.00 3.51
817 879 3.484649 GCATTGAAAAGCGCTATGTGATG 59.515 43.478 12.05 13.94 0.00 3.07
818 880 3.129113 TGCATTGAAAAGCGCTATGTGAT 59.871 39.130 12.05 0.00 0.00 3.06
819 881 2.487372 TGCATTGAAAAGCGCTATGTGA 59.513 40.909 12.05 0.00 0.00 3.58
820 882 2.866198 TGCATTGAAAAGCGCTATGTG 58.134 42.857 12.05 5.56 0.00 3.21
821 883 3.574284 TTGCATTGAAAAGCGCTATGT 57.426 38.095 12.05 0.00 0.00 2.29
822 884 4.907188 TTTTGCATTGAAAAGCGCTATG 57.093 36.364 12.05 11.94 0.00 2.23
823 885 5.170021 TCATTTTGCATTGAAAAGCGCTAT 58.830 33.333 12.05 1.76 0.00 2.97
824 886 4.554292 TCATTTTGCATTGAAAAGCGCTA 58.446 34.783 12.05 0.00 0.00 4.26
825 887 3.391965 TCATTTTGCATTGAAAAGCGCT 58.608 36.364 2.64 2.64 0.00 5.92
826 888 3.184986 ACTCATTTTGCATTGAAAAGCGC 59.815 39.130 0.00 0.00 0.00 5.92
827 889 4.682860 AGACTCATTTTGCATTGAAAAGCG 59.317 37.500 0.00 0.00 0.00 4.68
828 890 6.642131 TGTAGACTCATTTTGCATTGAAAAGC 59.358 34.615 0.00 0.00 0.00 3.51
829 891 8.578308 TTGTAGACTCATTTTGCATTGAAAAG 57.422 30.769 0.00 0.00 0.00 2.27
830 892 8.412456 TCTTGTAGACTCATTTTGCATTGAAAA 58.588 29.630 0.00 0.00 0.00 2.29
831 893 7.862372 GTCTTGTAGACTCATTTTGCATTGAAA 59.138 33.333 0.00 0.00 41.88 2.69
832 894 7.013178 TGTCTTGTAGACTCATTTTGCATTGAA 59.987 33.333 8.18 0.00 45.27 2.69
833 895 6.486320 TGTCTTGTAGACTCATTTTGCATTGA 59.514 34.615 8.18 0.00 45.27 2.57
834 896 6.671190 TGTCTTGTAGACTCATTTTGCATTG 58.329 36.000 8.18 0.00 45.27 2.82
835 897 6.882610 TGTCTTGTAGACTCATTTTGCATT 57.117 33.333 8.18 0.00 45.27 3.56
836 898 6.882610 TTGTCTTGTAGACTCATTTTGCAT 57.117 33.333 8.18 0.00 45.27 3.96
837 899 6.882610 ATTGTCTTGTAGACTCATTTTGCA 57.117 33.333 8.18 0.00 45.27 4.08
838 900 9.846248 ATTTATTGTCTTGTAGACTCATTTTGC 57.154 29.630 8.18 0.00 45.27 3.68
843 905 9.725019 TGTTCATTTATTGTCTTGTAGACTCAT 57.275 29.630 8.18 3.68 45.27 2.90
844 906 9.725019 ATGTTCATTTATTGTCTTGTAGACTCA 57.275 29.630 8.18 0.00 45.27 3.41
845 907 9.979270 CATGTTCATTTATTGTCTTGTAGACTC 57.021 33.333 8.18 0.00 45.27 3.36
846 908 9.507329 ACATGTTCATTTATTGTCTTGTAGACT 57.493 29.630 8.18 0.00 45.27 3.24
847 909 9.546909 CACATGTTCATTTATTGTCTTGTAGAC 57.453 33.333 0.00 0.00 45.26 2.59
848 910 9.283768 ACACATGTTCATTTATTGTCTTGTAGA 57.716 29.630 0.00 0.00 0.00 2.59
851 913 9.844790 CATACACATGTTCATTTATTGTCTTGT 57.155 29.630 0.00 0.00 0.00 3.16
852 914 9.844790 ACATACACATGTTCATTTATTGTCTTG 57.155 29.630 0.00 0.00 42.98 3.02
872 934 9.797556 GAAGTGTCATATGTGTAGTAACATACA 57.202 33.333 1.90 0.00 43.83 2.29
873 935 9.245962 GGAAGTGTCATATGTGTAGTAACATAC 57.754 37.037 1.90 0.00 43.83 2.39
874 936 8.418662 GGGAAGTGTCATATGTGTAGTAACATA 58.581 37.037 1.90 0.00 44.82 2.29
875 937 7.093068 TGGGAAGTGTCATATGTGTAGTAACAT 60.093 37.037 1.90 0.00 43.21 2.71
876 938 6.211785 TGGGAAGTGTCATATGTGTAGTAACA 59.788 38.462 1.90 0.00 0.00 2.41
877 939 6.534079 GTGGGAAGTGTCATATGTGTAGTAAC 59.466 42.308 1.90 0.00 0.00 2.50
878 940 6.439375 AGTGGGAAGTGTCATATGTGTAGTAA 59.561 38.462 1.90 0.00 0.00 2.24
879 941 5.955959 AGTGGGAAGTGTCATATGTGTAGTA 59.044 40.000 1.90 0.00 0.00 1.82
880 942 4.777896 AGTGGGAAGTGTCATATGTGTAGT 59.222 41.667 1.90 0.00 0.00 2.73
881 943 5.344743 AGTGGGAAGTGTCATATGTGTAG 57.655 43.478 1.90 0.00 0.00 2.74
882 944 8.541899 TTATAGTGGGAAGTGTCATATGTGTA 57.458 34.615 1.90 0.00 0.00 2.90
883 945 5.957771 ATAGTGGGAAGTGTCATATGTGT 57.042 39.130 1.90 0.00 0.00 3.72
884 946 6.931281 CCTTATAGTGGGAAGTGTCATATGTG 59.069 42.308 1.90 0.00 0.00 3.21
885 947 7.067496 CCTTATAGTGGGAAGTGTCATATGT 57.933 40.000 1.90 0.00 0.00 2.29
899 961 8.993404 ACTCTAAGTTACTACCCTTATAGTGG 57.007 38.462 0.00 0.00 36.09 4.00
906 968 9.987726 ATGTTACTACTCTAAGTTACTACCCTT 57.012 33.333 0.00 0.00 31.82 3.95
915 977 8.414778 GCTGGTCATATGTTACTACTCTAAGTT 58.585 37.037 1.90 0.00 0.00 2.66
916 978 7.014422 GGCTGGTCATATGTTACTACTCTAAGT 59.986 40.741 1.90 0.00 0.00 2.24
917 979 7.231722 AGGCTGGTCATATGTTACTACTCTAAG 59.768 40.741 1.90 0.00 0.00 2.18
918 980 7.067421 AGGCTGGTCATATGTTACTACTCTAA 58.933 38.462 1.90 0.00 0.00 2.10
919 981 6.611785 AGGCTGGTCATATGTTACTACTCTA 58.388 40.000 1.90 0.00 0.00 2.43
920 982 5.459505 AGGCTGGTCATATGTTACTACTCT 58.540 41.667 1.90 0.00 0.00 3.24
921 983 5.793030 AGGCTGGTCATATGTTACTACTC 57.207 43.478 1.90 0.00 0.00 2.59
922 984 7.857404 ATAAGGCTGGTCATATGTTACTACT 57.143 36.000 1.90 0.00 0.00 2.57
923 985 8.904099 AAATAAGGCTGGTCATATGTTACTAC 57.096 34.615 1.90 0.00 0.00 2.73
925 987 9.338622 GTTAAATAAGGCTGGTCATATGTTACT 57.661 33.333 1.90 0.00 0.00 2.24
926 988 8.280497 CGTTAAATAAGGCTGGTCATATGTTAC 58.720 37.037 1.90 0.00 0.00 2.50
927 989 7.041644 GCGTTAAATAAGGCTGGTCATATGTTA 60.042 37.037 1.90 0.00 42.10 2.41
928 990 6.238648 GCGTTAAATAAGGCTGGTCATATGTT 60.239 38.462 1.90 0.00 42.10 2.71
929 991 5.238650 GCGTTAAATAAGGCTGGTCATATGT 59.761 40.000 1.90 0.00 42.10 2.29
930 992 5.334879 GGCGTTAAATAAGGCTGGTCATATG 60.335 44.000 15.08 0.00 44.09 1.78
931 993 4.760204 GGCGTTAAATAAGGCTGGTCATAT 59.240 41.667 15.08 0.00 44.09 1.78
932 994 4.131596 GGCGTTAAATAAGGCTGGTCATA 58.868 43.478 15.08 0.00 44.09 2.15
933 995 2.949644 GGCGTTAAATAAGGCTGGTCAT 59.050 45.455 15.08 0.00 44.09 3.06
934 996 2.361789 GGCGTTAAATAAGGCTGGTCA 58.638 47.619 15.08 0.00 44.09 4.02
935 997 1.674441 GGGCGTTAAATAAGGCTGGTC 59.326 52.381 15.08 1.97 44.09 4.02
936 998 1.683938 GGGGCGTTAAATAAGGCTGGT 60.684 52.381 15.08 0.00 44.09 4.00
937 999 1.029681 GGGGCGTTAAATAAGGCTGG 58.970 55.000 15.08 0.00 44.09 4.85
940 1002 2.027325 CCGGGGCGTTAAATAAGGC 58.973 57.895 8.87 8.87 43.96 4.35
1018 1083 3.775654 CTCCTCCGGCTCACCACC 61.776 72.222 0.00 0.00 34.57 4.61
1176 1247 1.304962 TAGCGAGCTCACCTGGGAA 60.305 57.895 15.40 0.00 0.00 3.97
1195 1266 5.340932 CGATAACTATGACGAGCATGAGAAC 59.659 44.000 0.00 0.00 37.87 3.01
1199 1270 4.830826 ACGATAACTATGACGAGCATGA 57.169 40.909 0.00 0.00 37.87 3.07
1234 1308 0.311165 CGTGTCCGTCTCAGTTCAGT 59.689 55.000 0.00 0.00 0.00 3.41
1255 1329 3.722295 ACGCACGCCCATCAAACG 61.722 61.111 0.00 0.00 0.00 3.60
1256 1330 2.126888 CACGCACGCCCATCAAAC 60.127 61.111 0.00 0.00 0.00 2.93
1257 1331 4.036804 GCACGCACGCCCATCAAA 62.037 61.111 0.00 0.00 0.00 2.69
1272 1346 3.120385 CTTGTCCATCTGCGCGCA 61.120 61.111 34.12 34.12 0.00 6.09
1817 1894 3.951680 ACGGGAAAACACAGATCAAAGTT 59.048 39.130 0.00 0.00 0.00 2.66
1819 1896 4.036262 TGAACGGGAAAACACAGATCAAAG 59.964 41.667 0.00 0.00 0.00 2.77
1849 1927 6.183360 GGACATCATGGTTCAGTGATTACAAG 60.183 42.308 0.00 0.00 32.98 3.16
1853 1931 5.698741 AGGACATCATGGTTCAGTGATTA 57.301 39.130 0.00 0.00 32.98 1.75
1866 1944 5.762179 TTACAGAACCTGAAGGACATCAT 57.238 39.130 2.62 0.00 38.94 2.45
1867 1945 5.491070 CATTACAGAACCTGAAGGACATCA 58.509 41.667 2.62 0.00 38.94 3.07
1868 1946 4.878397 CCATTACAGAACCTGAAGGACATC 59.122 45.833 2.62 0.00 38.94 3.06
1949 2028 2.292292 ACCGTTTGATGCGTTAAAAGCT 59.708 40.909 0.00 0.00 35.28 3.74
1951 2030 4.039032 ACAACCGTTTGATGCGTTAAAAG 58.961 39.130 0.00 0.00 36.48 2.27
1952 2031 4.030134 ACAACCGTTTGATGCGTTAAAA 57.970 36.364 0.00 0.00 36.48 1.52
1966 2045 1.000955 TGGCAAACAAACAACAACCGT 59.999 42.857 0.00 0.00 0.00 4.83
1973 2052 4.890581 AGTATACCACTGGCAAACAAACAA 59.109 37.500 0.00 0.00 35.62 2.83
1990 2069 6.970043 CAGCAACTCTCTGTTCTACAGTATAC 59.030 42.308 6.71 0.00 46.03 1.47
2024 2103 6.589523 GGCTACTGTTCTGCTATCATTCATAG 59.410 42.308 0.00 0.00 38.06 2.23
2046 2125 3.105283 AGATTCCAAACGGTACTAGGCT 58.895 45.455 0.00 0.00 0.00 4.58
2079 2158 4.473444 TCTTGCCTCCTTTTCATGACTTT 58.527 39.130 0.00 0.00 0.00 2.66
2080 2159 4.104383 TCTTGCCTCCTTTTCATGACTT 57.896 40.909 0.00 0.00 0.00 3.01
2118 2197 2.232941 TGTGTATCGGGAGGTTTCTGTC 59.767 50.000 0.00 0.00 0.00 3.51
2136 2215 7.063780 GCTCATTTCCATTCCTGTTTATTTGTG 59.936 37.037 0.00 0.00 0.00 3.33
2146 2225 5.674525 TGTAGTAGCTCATTTCCATTCCTG 58.325 41.667 0.00 0.00 0.00 3.86
2177 2256 6.127647 GCTTCCTTTGTTGGATCATAACATCA 60.128 38.462 13.45 5.45 37.81 3.07
2236 2362 5.476254 TGGATGCATGTGTGACTCAAATAAA 59.524 36.000 2.46 0.00 0.00 1.40
2420 2548 7.064064 GTGTTTTCTGTCTAGAATCGTGAAAC 58.936 38.462 0.00 2.85 42.25 2.78
2444 2572 4.201950 GCGAATTCAATCCAGTTGCTATGT 60.202 41.667 6.22 0.00 37.74 2.29
2487 2615 6.780457 ATACATTATCACCAAAGCAAAGCT 57.220 33.333 0.00 0.00 42.56 3.74
2493 2621 5.455525 GCGAACAATACATTATCACCAAAGC 59.544 40.000 0.00 0.00 0.00 3.51
2501 2629 5.231357 TCGACACAGCGAACAATACATTATC 59.769 40.000 0.00 0.00 37.35 1.75
2564 2692 6.394809 CAGGTTGTATTGACATAAAAACCCC 58.605 40.000 6.17 0.00 35.87 4.95
2566 2694 7.222000 TCCAGGTTGTATTGACATAAAAACC 57.778 36.000 2.65 2.65 35.67 3.27
2571 2699 5.172687 TGCTCCAGGTTGTATTGACATAA 57.827 39.130 0.00 0.00 34.86 1.90
2603 2731 5.190992 TCTGCCATTTTGCTGCTATATTG 57.809 39.130 0.00 0.00 0.00 1.90
2683 2811 4.202503 ACCTGGTCTTGATCAATGAACAGT 60.203 41.667 30.16 22.30 42.21 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.