Multiple sequence alignment - TraesCS5B01G242600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G242600 chr5B 100.000 3996 0 0 1 3996 422041896 422037901 0.000000e+00 7380.0
1 TraesCS5B01G242600 chr5B 89.317 908 82 4 988 1892 421998685 421997790 0.000000e+00 1125.0
2 TraesCS5B01G242600 chr5B 80.395 607 83 24 2611 3211 421996941 421996365 2.850000e-116 429.0
3 TraesCS5B01G242600 chr5B 90.244 82 8 0 2462 2543 421997129 421997048 1.520000e-19 108.0
4 TraesCS5B01G242600 chr5B 81.667 120 20 2 1914 2032 421860827 421860709 9.140000e-17 99.0
5 TraesCS5B01G242600 chr5B 80.198 101 20 0 1909 2009 421997757 421997657 4.280000e-10 76.8
6 TraesCS5B01G242600 chr5D 89.408 3144 217 63 419 3504 357397458 357394373 0.000000e+00 3855.0
7 TraesCS5B01G242600 chr5D 84.594 1467 151 42 987 2402 357371993 357370551 0.000000e+00 1387.0
8 TraesCS5B01G242600 chr5D 83.264 1452 175 31 987 2403 357159942 357158524 0.000000e+00 1273.0
9 TraesCS5B01G242600 chr5D 80.263 608 83 23 2611 3211 357158176 357157599 1.330000e-114 424.0
10 TraesCS5B01G242600 chr5D 79.035 663 103 25 1153 1797 357065426 357064782 4.770000e-114 422.0
11 TraesCS5B01G242600 chr5D 85.429 350 32 8 2623 2971 357370194 357369863 2.960000e-91 346.0
12 TraesCS5B01G242600 chr5D 89.583 144 13 1 2 145 357401678 357401537 8.820000e-42 182.0
13 TraesCS5B01G242600 chr5D 82.500 120 19 2 1914 2032 357079668 357079550 1.960000e-18 104.0
14 TraesCS5B01G242600 chr5D 88.679 53 5 1 3533 3585 357394376 357394325 3.330000e-06 63.9
15 TraesCS5B01G242600 chr5A 90.968 2801 183 32 669 3439 458562719 458559959 0.000000e+00 3707.0
16 TraesCS5B01G242600 chr5A 85.041 1210 127 19 987 2170 458525347 458524166 0.000000e+00 1182.0
17 TraesCS5B01G242600 chr5A 86.926 566 63 5 6 567 458563325 458562767 3.390000e-175 625.0
18 TraesCS5B01G242600 chr5A 80.192 626 84 26 2592 3211 458523180 458522589 2.210000e-117 433.0
19 TraesCS5B01G242600 chr5A 90.698 172 16 0 3637 3808 458556632 458556461 3.110000e-56 230.0
20 TraesCS5B01G242600 chr5A 83.333 120 18 2 1914 2032 458330481 458330363 4.220000e-20 110.0
21 TraesCS5B01G242600 chr5A 85.938 64 8 1 3540 3603 458556693 458556631 2.580000e-07 67.6
22 TraesCS5B01G242600 chr3B 82.073 1177 150 43 1035 2168 148500273 148499115 0.000000e+00 948.0
23 TraesCS5B01G242600 chr3B 76.412 1009 165 41 2263 3226 148499043 148498063 1.000000e-130 477.0
24 TraesCS5B01G242600 chr3A 80.401 1296 164 59 941 2168 115849822 115848549 0.000000e+00 904.0
25 TraesCS5B01G242600 chr3A 76.623 1001 146 54 2271 3212 115848441 115847470 4.670000e-129 472.0
26 TraesCS5B01G242600 chr7B 83.065 124 19 2 1282 1404 58254441 58254319 1.170000e-20 111.0
27 TraesCS5B01G242600 chr3D 74.900 251 53 10 1237 1482 94721514 94721269 5.460000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G242600 chr5B 422037901 422041896 3995 True 7380.00 7380 100.0000 1 3996 1 chr5B.!!$R2 3995
1 TraesCS5B01G242600 chr5B 421996365 421998685 2320 True 434.70 1125 85.0385 988 3211 4 chr5B.!!$R3 2223
2 TraesCS5B01G242600 chr5D 357394325 357397458 3133 True 1959.45 3855 89.0435 419 3585 2 chr5D.!!$R6 3166
3 TraesCS5B01G242600 chr5D 357369863 357371993 2130 True 866.50 1387 85.0115 987 2971 2 chr5D.!!$R5 1984
4 TraesCS5B01G242600 chr5D 357157599 357159942 2343 True 848.50 1273 81.7635 987 3211 2 chr5D.!!$R4 2224
5 TraesCS5B01G242600 chr5D 357064782 357065426 644 True 422.00 422 79.0350 1153 1797 1 chr5D.!!$R1 644
6 TraesCS5B01G242600 chr5A 458556461 458563325 6864 True 1157.40 3707 88.6325 6 3808 4 chr5A.!!$R3 3802
7 TraesCS5B01G242600 chr5A 458522589 458525347 2758 True 807.50 1182 82.6165 987 3211 2 chr5A.!!$R2 2224
8 TraesCS5B01G242600 chr3B 148498063 148500273 2210 True 712.50 948 79.2425 1035 3226 2 chr3B.!!$R1 2191
9 TraesCS5B01G242600 chr3A 115847470 115849822 2352 True 688.00 904 78.5120 941 3212 2 chr3A.!!$R1 2271

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.335705 TACACGGGGTGTAGGGATCA 59.664 55.000 4.59 0.0 45.56 2.92 F
814 835 0.527817 GTCCGGCACTATGGAACGAG 60.528 60.000 0.00 0.0 35.67 4.18 F
815 836 1.227263 CCGGCACTATGGAACGAGG 60.227 63.158 0.00 0.0 0.00 4.63 F
816 837 1.515954 CGGCACTATGGAACGAGGT 59.484 57.895 0.00 0.0 0.00 3.85 F
1920 2096 1.963515 GGTTCATTTCTGCAGGTTGGT 59.036 47.619 15.13 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1287 1327 1.063811 GACGTAGCCGGAGTACTGC 59.936 63.158 5.05 0.73 38.78 4.40 R
2549 3241 0.402887 TGGTGTCTCGGAGGTACTGA 59.597 55.000 4.96 0.00 41.55 3.41 R
2609 3409 0.739462 CCGCTGTGGTCGAATTAGCA 60.739 55.000 0.00 0.00 34.16 3.49 R
2650 3454 1.135721 GAGTACCTCGTGGCGGTAATT 59.864 52.381 2.76 0.00 38.64 1.40 R
3579 7631 0.462047 CCTCCCGCCACACATAGTTC 60.462 60.000 0.00 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.212616 GCTACAATGAGCGAGCGAAT 58.787 50.000 0.00 0.00 31.57 3.34
29 30 2.813779 ATGAGCGAGCGAATGAAAAC 57.186 45.000 0.00 0.00 0.00 2.43
38 39 4.168760 GAGCGAATGAAAACCATGGAAAG 58.831 43.478 21.47 0.11 35.24 2.62
54 55 2.029290 GGAAAGTAGCCAGTGAACGAGA 60.029 50.000 0.00 0.00 0.00 4.04
80 81 2.200170 AAGCAACAAAGCGATCCGGC 62.200 55.000 0.00 0.00 40.15 6.13
88 89 3.780624 AGCGATCCGGCTTTGTTAT 57.219 47.368 0.00 0.00 41.39 1.89
91 92 1.003866 GCGATCCGGCTTTGTTATGAC 60.004 52.381 0.00 0.00 0.00 3.06
92 93 2.276201 CGATCCGGCTTTGTTATGACA 58.724 47.619 0.00 0.00 0.00 3.58
117 118 3.244112 GGAGAAAAACTCTTCCGGTGAGA 60.244 47.826 25.67 18.09 44.37 3.27
121 122 1.546961 AACTCTTCCGGTGAGACGAT 58.453 50.000 25.67 11.44 35.66 3.73
133 134 3.309954 GGTGAGACGATCTAACATTTGGC 59.690 47.826 0.00 0.00 28.97 4.52
136 137 4.571984 TGAGACGATCTAACATTTGGCATG 59.428 41.667 0.00 0.00 0.00 4.06
140 141 4.201950 ACGATCTAACATTTGGCATGAAGC 60.202 41.667 0.00 0.00 44.65 3.86
161 162 3.233164 GAGATATAGCTCTCGCGATCG 57.767 52.381 10.36 11.69 42.32 3.69
162 163 1.329292 AGATATAGCTCTCGCGATCGC 59.671 52.381 29.80 29.80 42.32 4.58
174 175 2.183300 GATCGCAGGTGGTACGCA 59.817 61.111 0.00 0.00 43.02 5.24
191 192 1.718757 GCAATTGCTCGCTACCCAGG 61.719 60.000 23.21 0.00 38.21 4.45
206 207 2.284405 AGGGACCTACACGGGGTG 60.284 66.667 0.00 0.00 37.17 4.61
215 216 0.335705 TACACGGGGTGTAGGGATCA 59.664 55.000 4.59 0.00 45.56 2.92
222 223 1.527370 GTGTAGGGATCACCAGGGC 59.473 63.158 0.00 0.00 43.89 5.19
238 239 2.028385 CAGGGCTACGGTCTTGTACTTT 60.028 50.000 0.00 0.00 0.00 2.66
245 246 3.454375 ACGGTCTTGTACTTTCAGTGTG 58.546 45.455 0.00 0.00 0.00 3.82
246 247 3.118884 ACGGTCTTGTACTTTCAGTGTGT 60.119 43.478 0.00 0.00 0.00 3.72
257 258 8.185505 TGTACTTTCAGTGTGTTTATTTCCAAC 58.814 33.333 0.00 0.00 0.00 3.77
258 259 6.569780 ACTTTCAGTGTGTTTATTTCCAACC 58.430 36.000 0.00 0.00 0.00 3.77
259 260 4.822036 TCAGTGTGTTTATTTCCAACCG 57.178 40.909 0.00 0.00 0.00 4.44
260 261 3.566322 TCAGTGTGTTTATTTCCAACCGG 59.434 43.478 0.00 0.00 0.00 5.28
288 289 7.814107 CACAAATGACACATATTTTGGCTAGTT 59.186 33.333 4.08 0.00 0.00 2.24
290 291 5.794687 TGACACATATTTTGGCTAGTTCG 57.205 39.130 0.00 0.00 0.00 3.95
320 321 1.811941 GCCCAAGTGCTCTGTATAGGC 60.812 57.143 0.00 0.00 0.00 3.93
334 335 3.582647 TGTATAGGCGATGATGGTCCATT 59.417 43.478 5.65 0.00 0.00 3.16
347 348 6.356556 TGATGGTCCATTAAGTATGAACCAG 58.643 40.000 5.65 0.00 36.26 4.00
352 353 7.128109 TGGTCCATTAAGTATGAACCAGGATTA 59.872 37.037 0.00 0.00 36.26 1.75
353 354 8.164070 GGTCCATTAAGTATGAACCAGGATTAT 58.836 37.037 0.00 0.00 36.26 1.28
354 355 9.574516 GTCCATTAAGTATGAACCAGGATTATT 57.425 33.333 0.00 0.00 36.26 1.40
410 411 9.606631 ATTTACTCTGCATTTTGGTTTGTTTTA 57.393 25.926 0.00 0.00 0.00 1.52
411 412 8.641499 TTACTCTGCATTTTGGTTTGTTTTAG 57.359 30.769 0.00 0.00 0.00 1.85
415 416 5.983540 TGCATTTTGGTTTGTTTTAGGTCT 58.016 33.333 0.00 0.00 0.00 3.85
418 419 6.145534 GCATTTTGGTTTGTTTTAGGTCTAGC 59.854 38.462 0.00 0.00 0.00 3.42
590 595 8.499403 AGTTTGATTGAGGAGAAAGCTAATAC 57.501 34.615 0.00 0.00 0.00 1.89
592 597 5.050490 TGATTGAGGAGAAAGCTAATACGC 58.950 41.667 0.00 0.00 0.00 4.42
593 598 4.465632 TTGAGGAGAAAGCTAATACGCA 57.534 40.909 0.00 0.00 0.00 5.24
596 601 4.159693 TGAGGAGAAAGCTAATACGCAGAA 59.840 41.667 0.00 0.00 0.00 3.02
633 654 9.113876 CAAAGAAGTAAAAATATGAACCACGAC 57.886 33.333 0.00 0.00 0.00 4.34
634 655 7.373778 AGAAGTAAAAATATGAACCACGACC 57.626 36.000 0.00 0.00 0.00 4.79
655 676 5.625921 CCTAGGAGGTCGTAAGCTAATAC 57.374 47.826 1.05 0.00 32.07 1.89
657 678 2.292845 AGGAGGTCGTAAGCTAATACGC 59.707 50.000 12.17 8.02 46.22 4.42
658 679 2.033801 GGAGGTCGTAAGCTAATACGCA 59.966 50.000 12.17 0.88 46.22 5.24
659 680 3.298317 GAGGTCGTAAGCTAATACGCAG 58.702 50.000 12.17 0.00 46.22 5.18
660 681 2.947652 AGGTCGTAAGCTAATACGCAGA 59.052 45.455 12.17 0.00 46.22 4.26
661 682 3.379372 AGGTCGTAAGCTAATACGCAGAA 59.621 43.478 12.17 0.00 46.22 3.02
662 683 4.037684 AGGTCGTAAGCTAATACGCAGAAT 59.962 41.667 12.17 0.00 46.22 2.40
663 684 5.240183 AGGTCGTAAGCTAATACGCAGAATA 59.760 40.000 12.17 0.00 46.22 1.75
664 685 5.916883 GGTCGTAAGCTAATACGCAGAATAA 59.083 40.000 12.17 0.00 46.22 1.40
665 686 6.418819 GGTCGTAAGCTAATACGCAGAATAAA 59.581 38.462 12.17 0.00 46.22 1.40
666 687 7.115947 GGTCGTAAGCTAATACGCAGAATAAAT 59.884 37.037 12.17 0.00 46.22 1.40
667 688 9.121517 GTCGTAAGCTAATACGCAGAATAAATA 57.878 33.333 12.17 0.00 46.22 1.40
716 737 3.502211 GGTCTCATCGTTTGGATTGTTGT 59.498 43.478 0.00 0.00 31.28 3.32
733 754 3.764434 TGTTGTCTAGAGATGTCACCTCC 59.236 47.826 0.00 0.00 0.00 4.30
759 780 2.285154 CGGCGTCGTCAGGAAATAC 58.715 57.895 0.00 0.00 0.00 1.89
764 785 2.991190 GCGTCGTCAGGAAATACTTTCA 59.009 45.455 0.00 0.00 41.43 2.69
814 835 0.527817 GTCCGGCACTATGGAACGAG 60.528 60.000 0.00 0.00 35.67 4.18
815 836 1.227263 CCGGCACTATGGAACGAGG 60.227 63.158 0.00 0.00 0.00 4.63
816 837 1.515954 CGGCACTATGGAACGAGGT 59.484 57.895 0.00 0.00 0.00 3.85
1012 1046 4.130118 GCAGATTACGATGAGGAACCATT 58.870 43.478 0.00 0.00 0.00 3.16
1287 1327 3.827784 CCGCGCGTCAACTTCGAG 61.828 66.667 29.95 4.86 0.00 4.04
1353 1393 4.806330 CGCTCTTCTACTACTTTGTGGAA 58.194 43.478 0.00 0.00 36.33 3.53
1664 1809 3.749064 GTGGAGAGCGGCGACTCA 61.749 66.667 26.19 15.05 39.26 3.41
1920 2096 1.963515 GGTTCATTTCTGCAGGTTGGT 59.036 47.619 15.13 0.00 0.00 3.67
2124 2309 3.385749 CTACGCCCCGGTCTGCATT 62.386 63.158 0.00 0.00 0.00 3.56
2172 2357 2.349580 CAGCAGCTACGTACGTACTACA 59.650 50.000 23.60 5.82 0.00 2.74
2204 2392 7.763172 ACAAATATACGCTCTTTCTCTTCTG 57.237 36.000 0.00 0.00 0.00 3.02
2221 2409 5.678583 TCTTCTGGAAATCTCATCATCACC 58.321 41.667 0.00 0.00 0.00 4.02
2232 2766 5.957798 TCTCATCATCACCAAGAAATTTGC 58.042 37.500 0.00 0.00 0.00 3.68
2240 2774 4.518590 TCACCAAGAAATTTGCTCGATTGA 59.481 37.500 0.00 0.00 0.00 2.57
2420 3007 3.013921 TGCTTATTTACCCTTTCCAGCG 58.986 45.455 0.00 0.00 0.00 5.18
2439 3028 2.372837 GCGGGATATTTACCCCACCTTA 59.627 50.000 0.00 0.00 44.09 2.69
2531 3203 3.367087 CGACAACGGATTAAGAGTCTGGT 60.367 47.826 0.00 0.00 35.72 4.00
2549 3241 6.831868 AGTCTGGTTGTACAGGTAAACATTTT 59.168 34.615 0.00 0.00 38.98 1.82
2609 3409 7.534085 TTGCGACTTATCTCATAAAATCGTT 57.466 32.000 0.00 0.00 36.53 3.85
2621 3425 6.711579 TCATAAAATCGTTGCTAATTCGACC 58.288 36.000 0.00 0.00 36.46 4.79
2650 3454 1.377072 CATGGACGATGTGTGCCCA 60.377 57.895 0.00 0.00 38.31 5.36
2710 3514 0.309302 CAATCACAAAACCGTGGCGA 59.691 50.000 0.00 0.00 37.50 5.54
2775 3587 3.564225 GCAATAACCCTTAATCCCTGTCG 59.436 47.826 0.00 0.00 0.00 4.35
2798 3615 5.005779 CGTACTAGTCTTGTGATTGGATTGC 59.994 44.000 0.00 0.00 0.00 3.56
2799 3616 4.910195 ACTAGTCTTGTGATTGGATTGCA 58.090 39.130 0.00 0.00 0.00 4.08
2800 3617 5.316167 ACTAGTCTTGTGATTGGATTGCAA 58.684 37.500 0.00 0.00 0.00 4.08
2803 3620 6.105397 AGTCTTGTGATTGGATTGCAAATT 57.895 33.333 1.71 0.00 0.00 1.82
2804 3621 5.929992 AGTCTTGTGATTGGATTGCAAATTG 59.070 36.000 1.71 0.00 0.00 2.32
2805 3622 4.691685 TCTTGTGATTGGATTGCAAATTGC 59.308 37.500 11.58 11.58 45.29 3.56
2996 3831 3.164024 TCCGTATGGAGCCCATGAT 57.836 52.632 14.84 0.00 44.84 2.45
2998 3833 0.390340 CCGTATGGAGCCCATGATCG 60.390 60.000 14.84 14.67 44.84 3.69
2999 3834 0.603065 CGTATGGAGCCCATGATCGA 59.397 55.000 14.84 0.00 44.84 3.59
3000 3835 1.403382 CGTATGGAGCCCATGATCGAG 60.403 57.143 14.84 0.02 44.84 4.04
3023 3860 2.552093 ATACTGCTGGTCCTACAGGT 57.448 50.000 14.04 5.04 38.90 4.00
3054 3900 1.506262 CGGGCGGAGAAACCAATTG 59.494 57.895 0.00 0.00 38.90 2.32
3070 3916 0.469917 ATTGGTCCAGCCGGATACAG 59.530 55.000 5.05 0.00 45.33 2.74
3077 3923 4.505039 GGTCCAGCCGGATACAGATAAATT 60.505 45.833 5.05 0.00 45.33 1.82
3104 3952 7.680730 AGTGTGATATAATATCAACACCCCTC 58.319 38.462 14.07 0.00 34.10 4.30
3114 3962 5.559148 ATCAACACCCCTCATTAGATCTC 57.441 43.478 0.00 0.00 0.00 2.75
3116 3964 3.314307 ACACCCCTCATTAGATCTCGA 57.686 47.619 0.00 0.00 0.00 4.04
3168 4017 1.202604 ACCTTGTGTACGTTGTCCCAG 60.203 52.381 0.00 0.00 0.00 4.45
3243 4097 0.034616 TTTTCTTTGCGGGGGCATTG 59.965 50.000 0.00 0.00 0.00 2.82
3275 4129 7.753132 TGCTTAGCATGGTTAAATAAAGTTTCG 59.247 33.333 1.39 0.00 31.71 3.46
3282 4136 8.911662 CATGGTTAAATAAAGTTTCGGAAGTTG 58.088 33.333 0.00 0.00 0.00 3.16
3284 4138 8.347035 TGGTTAAATAAAGTTTCGGAAGTTGAG 58.653 33.333 0.00 0.00 0.00 3.02
3285 4139 8.562052 GGTTAAATAAAGTTTCGGAAGTTGAGA 58.438 33.333 0.00 0.00 0.00 3.27
3293 4147 2.257207 TCGGAAGTTGAGACCCATCTT 58.743 47.619 0.00 0.00 37.48 2.40
3297 4151 4.081642 CGGAAGTTGAGACCCATCTTTCTA 60.082 45.833 0.00 0.00 35.54 2.10
3300 4154 6.154706 GGAAGTTGAGACCCATCTTTCTACTA 59.845 42.308 0.00 0.00 35.54 1.82
3304 4158 8.606830 AGTTGAGACCCATCTTTCTACTAAATT 58.393 33.333 0.00 0.00 34.34 1.82
3333 4187 2.990066 AGATTCGGCCTAAGGTTCTG 57.010 50.000 0.00 0.00 0.00 3.02
3362 4216 9.113838 CAACATGTTAGGTCTGATTATAAGCTT 57.886 33.333 11.53 3.48 0.00 3.74
3364 4218 9.113838 ACATGTTAGGTCTGATTATAAGCTTTG 57.886 33.333 3.20 0.00 0.00 2.77
3371 4225 7.770897 AGGTCTGATTATAAGCTTTGTGGTTAG 59.229 37.037 3.20 0.00 41.22 2.34
3381 4235 4.018415 AGCTTTGTGGTTAGTGATACCCAT 60.018 41.667 0.00 0.00 34.66 4.00
3384 4238 5.362105 TTGTGGTTAGTGATACCCATACC 57.638 43.478 0.00 0.00 34.66 2.73
3393 4247 2.038426 TGATACCCATACCGCCTTCATG 59.962 50.000 0.00 0.00 0.00 3.07
3399 4253 1.414181 CATACCGCCTTCATGAGAGGT 59.586 52.381 19.00 16.54 38.87 3.85
3402 4256 1.342076 ACCGCCTTCATGAGAGGTAGA 60.342 52.381 19.00 0.00 35.42 2.59
3407 4261 4.219507 CGCCTTCATGAGAGGTAGATACAT 59.780 45.833 19.00 0.00 0.00 2.29
3408 4262 5.621104 CGCCTTCATGAGAGGTAGATACATC 60.621 48.000 19.00 0.00 37.27 3.06
3439 4293 5.065731 GGAGTTTTGGTGCTTCATGAGATAG 59.934 44.000 0.00 0.00 0.00 2.08
3441 4295 6.006449 AGTTTTGGTGCTTCATGAGATAGTT 58.994 36.000 0.00 0.00 0.00 2.24
3442 4296 6.491403 AGTTTTGGTGCTTCATGAGATAGTTT 59.509 34.615 0.00 0.00 0.00 2.66
3443 4297 7.665559 AGTTTTGGTGCTTCATGAGATAGTTTA 59.334 33.333 0.00 0.00 0.00 2.01
3445 4299 7.558161 TTGGTGCTTCATGAGATAGTTTATG 57.442 36.000 0.00 0.00 0.00 1.90
3446 4300 6.888105 TGGTGCTTCATGAGATAGTTTATGA 58.112 36.000 0.00 0.00 0.00 2.15
3448 4302 7.147672 TGGTGCTTCATGAGATAGTTTATGAGA 60.148 37.037 0.00 0.00 31.85 3.27
3449 4303 7.877097 GGTGCTTCATGAGATAGTTTATGAGAT 59.123 37.037 0.00 0.00 31.85 2.75
3450 4304 9.920133 GTGCTTCATGAGATAGTTTATGAGATA 57.080 33.333 0.00 0.00 31.85 1.98
3484 7534 6.463995 AACAAGTGGAGTGCTTATGAAAAA 57.536 33.333 0.00 0.00 0.00 1.94
3485 7535 6.076981 ACAAGTGGAGTGCTTATGAAAAAG 57.923 37.500 0.00 0.00 0.00 2.27
3487 7537 5.948992 AGTGGAGTGCTTATGAAAAAGAC 57.051 39.130 0.00 0.00 0.00 3.01
3488 7538 5.625150 AGTGGAGTGCTTATGAAAAAGACT 58.375 37.500 0.00 0.00 0.00 3.24
3491 7541 6.638468 GTGGAGTGCTTATGAAAAAGACTTTG 59.362 38.462 0.06 0.00 0.00 2.77
3506 7558 5.184892 AGACTTTGAAAGGCCTATGACAT 57.815 39.130 5.16 0.00 37.17 3.06
3507 7559 5.574188 AGACTTTGAAAGGCCTATGACATT 58.426 37.500 5.16 0.00 37.17 2.71
3508 7560 5.416952 AGACTTTGAAAGGCCTATGACATTG 59.583 40.000 5.16 3.18 37.17 2.82
3509 7561 5.079643 ACTTTGAAAGGCCTATGACATTGT 58.920 37.500 5.16 3.76 0.00 2.71
3510 7562 5.047802 ACTTTGAAAGGCCTATGACATTGTG 60.048 40.000 5.16 0.00 0.00 3.33
3511 7563 4.299586 TGAAAGGCCTATGACATTGTGA 57.700 40.909 5.16 0.00 0.00 3.58
3512 7564 4.661222 TGAAAGGCCTATGACATTGTGAA 58.339 39.130 5.16 0.00 0.00 3.18
3513 7565 4.701651 TGAAAGGCCTATGACATTGTGAAG 59.298 41.667 5.16 0.00 0.00 3.02
3514 7566 4.307032 AAGGCCTATGACATTGTGAAGT 57.693 40.909 5.16 0.00 0.00 3.01
3515 7567 3.614092 AGGCCTATGACATTGTGAAGTG 58.386 45.455 1.29 0.00 0.00 3.16
3516 7568 2.684881 GGCCTATGACATTGTGAAGTGG 59.315 50.000 0.00 0.00 0.00 4.00
3517 7569 3.347216 GCCTATGACATTGTGAAGTGGT 58.653 45.455 0.00 0.00 0.00 4.16
3518 7570 3.375299 GCCTATGACATTGTGAAGTGGTC 59.625 47.826 0.00 0.00 0.00 4.02
3519 7571 4.836825 CCTATGACATTGTGAAGTGGTCT 58.163 43.478 0.00 0.00 0.00 3.85
3520 7572 4.872691 CCTATGACATTGTGAAGTGGTCTC 59.127 45.833 0.00 0.00 0.00 3.36
3521 7573 4.630644 ATGACATTGTGAAGTGGTCTCT 57.369 40.909 0.00 0.00 0.00 3.10
3522 7574 4.422073 TGACATTGTGAAGTGGTCTCTT 57.578 40.909 0.00 0.00 0.00 2.85
3523 7575 4.380531 TGACATTGTGAAGTGGTCTCTTC 58.619 43.478 0.00 5.99 42.67 2.87
3524 7576 4.101585 TGACATTGTGAAGTGGTCTCTTCT 59.898 41.667 12.17 0.00 42.76 2.85
3525 7577 4.384056 ACATTGTGAAGTGGTCTCTTCTG 58.616 43.478 12.17 6.38 42.76 3.02
3526 7578 4.141620 ACATTGTGAAGTGGTCTCTTCTGT 60.142 41.667 12.17 6.85 42.76 3.41
3527 7579 5.070446 ACATTGTGAAGTGGTCTCTTCTGTA 59.930 40.000 12.17 1.37 42.76 2.74
3528 7580 4.585955 TGTGAAGTGGTCTCTTCTGTAC 57.414 45.455 12.17 0.00 42.76 2.90
3529 7581 3.321111 TGTGAAGTGGTCTCTTCTGTACC 59.679 47.826 12.17 0.00 42.76 3.34
3530 7582 3.321111 GTGAAGTGGTCTCTTCTGTACCA 59.679 47.826 12.17 0.00 42.76 3.25
3531 7583 3.964688 TGAAGTGGTCTCTTCTGTACCAA 59.035 43.478 12.17 0.00 44.56 3.67
3532 7584 4.407621 TGAAGTGGTCTCTTCTGTACCAAA 59.592 41.667 12.17 0.00 44.56 3.28
3533 7585 5.071788 TGAAGTGGTCTCTTCTGTACCAAAT 59.928 40.000 12.17 0.00 44.56 2.32
3534 7586 4.899502 AGTGGTCTCTTCTGTACCAAATG 58.100 43.478 0.00 0.00 44.56 2.32
3535 7587 4.593206 AGTGGTCTCTTCTGTACCAAATGA 59.407 41.667 0.00 0.00 44.56 2.57
3536 7588 5.249393 AGTGGTCTCTTCTGTACCAAATGAT 59.751 40.000 0.00 0.00 44.56 2.45
3537 7589 5.352569 GTGGTCTCTTCTGTACCAAATGATG 59.647 44.000 0.00 0.00 44.56 3.07
3538 7590 4.333926 GGTCTCTTCTGTACCAAATGATGC 59.666 45.833 0.00 0.00 33.28 3.91
3567 7619 3.146066 GCTTTGGTGATACTTGGTGTGA 58.854 45.455 0.00 0.00 0.00 3.58
3569 7621 2.448926 TGGTGATACTTGGTGTGACG 57.551 50.000 0.00 0.00 0.00 4.35
3572 7624 0.611200 TGATACTTGGTGTGACGGGG 59.389 55.000 0.00 0.00 0.00 5.73
3579 7631 2.046314 GTGTGACGGGGTGATGGG 60.046 66.667 0.00 0.00 0.00 4.00
3587 7639 0.837272 CGGGGTGATGGGAACTATGT 59.163 55.000 0.00 0.00 0.00 2.29
3589 7641 1.564348 GGGGTGATGGGAACTATGTGT 59.436 52.381 0.00 0.00 0.00 3.72
3592 7644 2.017049 GTGATGGGAACTATGTGTGGC 58.983 52.381 0.00 0.00 0.00 5.01
3596 7648 1.600107 GGAACTATGTGTGGCGGGA 59.400 57.895 0.00 0.00 0.00 5.14
3599 7651 0.907704 AACTATGTGTGGCGGGAGGA 60.908 55.000 0.00 0.00 0.00 3.71
3600 7652 0.691078 ACTATGTGTGGCGGGAGGAT 60.691 55.000 0.00 0.00 0.00 3.24
3601 7653 0.469917 CTATGTGTGGCGGGAGGATT 59.530 55.000 0.00 0.00 0.00 3.01
3602 7654 0.180171 TATGTGTGGCGGGAGGATTG 59.820 55.000 0.00 0.00 0.00 2.67
3603 7655 3.134127 GTGTGGCGGGAGGATTGC 61.134 66.667 0.00 0.00 0.00 3.56
3608 7660 4.898607 GCGGGAGGATTGCCATAA 57.101 55.556 0.00 0.00 33.71 1.90
3609 7661 3.109847 GCGGGAGGATTGCCATAAA 57.890 52.632 0.00 0.00 33.71 1.40
3610 7662 0.954452 GCGGGAGGATTGCCATAAAG 59.046 55.000 0.00 0.00 33.71 1.85
3611 7663 1.609208 CGGGAGGATTGCCATAAAGG 58.391 55.000 0.00 0.00 41.84 3.11
3612 7664 1.133792 CGGGAGGATTGCCATAAAGGT 60.134 52.381 0.00 0.00 40.61 3.50
3613 7665 2.686715 CGGGAGGATTGCCATAAAGGTT 60.687 50.000 0.00 0.00 40.61 3.50
3614 7666 3.434453 CGGGAGGATTGCCATAAAGGTTA 60.434 47.826 0.00 0.00 40.61 2.85
3615 7667 4.542697 GGGAGGATTGCCATAAAGGTTAA 58.457 43.478 0.00 0.00 40.61 2.01
3616 7668 5.147767 GGGAGGATTGCCATAAAGGTTAAT 58.852 41.667 0.00 0.00 40.61 1.40
3617 7669 5.011023 GGGAGGATTGCCATAAAGGTTAATG 59.989 44.000 0.00 0.00 40.61 1.90
3618 7670 5.833131 GGAGGATTGCCATAAAGGTTAATGA 59.167 40.000 0.00 0.00 40.61 2.57
3619 7671 6.239036 GGAGGATTGCCATAAAGGTTAATGAC 60.239 42.308 0.00 0.00 40.61 3.06
3620 7672 5.598417 AGGATTGCCATAAAGGTTAATGACC 59.402 40.000 0.00 0.00 42.39 4.02
3621 7673 6.809713 AGGATTGCCATAAAGGTTAATGACCA 60.810 38.462 0.00 0.00 43.70 4.02
3622 7674 8.243391 AGGATTGCCATAAAGGTTAATGACCAA 61.243 37.037 0.00 0.00 43.70 3.67
3633 7685 5.948992 GTTAATGACCAACTTGCTCTCTT 57.051 39.130 0.00 0.00 0.00 2.85
3634 7686 5.693814 GTTAATGACCAACTTGCTCTCTTG 58.306 41.667 0.00 0.00 0.00 3.02
3635 7687 1.597742 TGACCAACTTGCTCTCTTGC 58.402 50.000 0.00 0.00 0.00 4.01
3654 7706 4.535526 TGCTGTTTGACATAGTAGCTGA 57.464 40.909 0.00 0.00 32.66 4.26
3691 7743 5.512753 TTGTTAAGCAAGCTCAATGACAA 57.487 34.783 0.00 0.00 32.52 3.18
3746 7798 6.950842 TGGATTAGCTATGCTACAATATGCT 58.049 36.000 0.00 0.00 41.12 3.79
3747 7799 8.078060 TGGATTAGCTATGCTACAATATGCTA 57.922 34.615 0.00 0.00 41.12 3.49
3753 7805 8.434733 AGCTATGCTACAATATGCTAATGATG 57.565 34.615 0.00 0.00 36.99 3.07
3778 7830 7.067859 TGTCATTTTTCTGATGAAGGATGATCC 59.932 37.037 2.46 2.46 37.50 3.36
3780 7832 4.760530 TTTCTGATGAAGGATGATCCGT 57.239 40.909 5.71 1.92 42.75 4.69
3797 7849 4.081322 TCCGTTTGAGGCTAGAAACTTT 57.919 40.909 15.74 0.00 31.15 2.66
3799 7851 5.613329 TCCGTTTGAGGCTAGAAACTTTAA 58.387 37.500 15.74 1.47 31.15 1.52
3808 7860 8.594550 TGAGGCTAGAAACTTTAAGTACAATCT 58.405 33.333 0.00 3.40 0.00 2.40
3848 7900 8.924511 AATTCTGGACTCAAGATAAGTTTTCA 57.075 30.769 0.00 0.00 0.00 2.69
3849 7901 7.730364 TTCTGGACTCAAGATAAGTTTTCAC 57.270 36.000 0.00 0.00 0.00 3.18
3850 7902 6.826668 TCTGGACTCAAGATAAGTTTTCACA 58.173 36.000 0.00 0.00 0.00 3.58
3851 7903 7.279615 TCTGGACTCAAGATAAGTTTTCACAA 58.720 34.615 0.00 0.00 0.00 3.33
3852 7904 7.442364 TCTGGACTCAAGATAAGTTTTCACAAG 59.558 37.037 0.00 0.00 0.00 3.16
3853 7905 7.279615 TGGACTCAAGATAAGTTTTCACAAGA 58.720 34.615 0.00 0.00 0.00 3.02
3854 7906 7.442364 TGGACTCAAGATAAGTTTTCACAAGAG 59.558 37.037 0.00 0.00 0.00 2.85
3855 7907 7.442666 GGACTCAAGATAAGTTTTCACAAGAGT 59.557 37.037 0.00 0.00 34.50 3.24
3881 7933 2.452600 TTTTGTCTTGGGGAAGCAGT 57.547 45.000 0.00 0.00 0.00 4.40
3882 7934 2.452600 TTTGTCTTGGGGAAGCAGTT 57.547 45.000 0.00 0.00 0.00 3.16
3883 7935 1.691196 TTGTCTTGGGGAAGCAGTTG 58.309 50.000 0.00 0.00 0.00 3.16
3884 7936 0.843309 TGTCTTGGGGAAGCAGTTGA 59.157 50.000 0.00 0.00 0.00 3.18
3885 7937 1.239347 GTCTTGGGGAAGCAGTTGAC 58.761 55.000 0.00 0.00 0.00 3.18
3886 7938 0.843309 TCTTGGGGAAGCAGTTGACA 59.157 50.000 0.00 0.00 0.00 3.58
3887 7939 1.214175 TCTTGGGGAAGCAGTTGACAA 59.786 47.619 0.00 0.00 0.00 3.18
3888 7940 2.158475 TCTTGGGGAAGCAGTTGACAAT 60.158 45.455 0.00 0.00 0.00 2.71
3889 7941 1.619654 TGGGGAAGCAGTTGACAATG 58.380 50.000 0.00 0.00 0.00 2.82
3890 7942 1.144708 TGGGGAAGCAGTTGACAATGA 59.855 47.619 0.00 0.00 0.00 2.57
3891 7943 1.815003 GGGGAAGCAGTTGACAATGAG 59.185 52.381 0.00 0.00 0.00 2.90
3892 7944 1.200948 GGGAAGCAGTTGACAATGAGC 59.799 52.381 0.00 0.00 0.00 4.26
3893 7945 1.881973 GGAAGCAGTTGACAATGAGCA 59.118 47.619 10.67 0.00 0.00 4.26
3894 7946 2.294233 GGAAGCAGTTGACAATGAGCAA 59.706 45.455 10.67 0.00 0.00 3.91
3895 7947 3.243501 GGAAGCAGTTGACAATGAGCAAA 60.244 43.478 10.67 0.00 0.00 3.68
3896 7948 4.362279 GAAGCAGTTGACAATGAGCAAAA 58.638 39.130 10.67 0.00 0.00 2.44
3897 7949 3.709987 AGCAGTTGACAATGAGCAAAAC 58.290 40.909 10.67 0.00 0.00 2.43
3898 7950 3.382546 AGCAGTTGACAATGAGCAAAACT 59.617 39.130 10.67 0.00 0.00 2.66
3899 7951 4.580167 AGCAGTTGACAATGAGCAAAACTA 59.420 37.500 10.67 0.00 0.00 2.24
3900 7952 4.676924 GCAGTTGACAATGAGCAAAACTAC 59.323 41.667 0.00 0.00 0.00 2.73
3901 7953 5.733091 GCAGTTGACAATGAGCAAAACTACA 60.733 40.000 0.00 0.00 0.00 2.74
3902 7954 6.264832 CAGTTGACAATGAGCAAAACTACAA 58.735 36.000 0.00 0.00 0.00 2.41
3903 7955 6.751425 CAGTTGACAATGAGCAAAACTACAAA 59.249 34.615 0.00 0.00 0.00 2.83
3904 7956 7.436080 CAGTTGACAATGAGCAAAACTACAAAT 59.564 33.333 0.00 0.00 0.00 2.32
3905 7957 7.436080 AGTTGACAATGAGCAAAACTACAAATG 59.564 33.333 0.00 0.00 0.00 2.32
3906 7958 5.691305 TGACAATGAGCAAAACTACAAATGC 59.309 36.000 0.00 0.00 39.06 3.56
3907 7959 5.599732 ACAATGAGCAAAACTACAAATGCA 58.400 33.333 0.00 0.00 41.18 3.96
3908 7960 6.225318 ACAATGAGCAAAACTACAAATGCAT 58.775 32.000 0.00 0.00 41.18 3.96
3909 7961 6.707161 ACAATGAGCAAAACTACAAATGCATT 59.293 30.769 5.99 5.99 41.18 3.56
3910 7962 7.227116 ACAATGAGCAAAACTACAAATGCATTT 59.773 29.630 18.99 18.99 41.18 2.32
3911 7963 7.733402 ATGAGCAAAACTACAAATGCATTTT 57.267 28.000 21.95 15.06 41.18 1.82
3912 7964 7.176285 TGAGCAAAACTACAAATGCATTTTC 57.824 32.000 21.95 12.93 41.18 2.29
3913 7965 6.760298 TGAGCAAAACTACAAATGCATTTTCA 59.240 30.769 21.95 15.19 41.18 2.69
3914 7966 6.947258 AGCAAAACTACAAATGCATTTTCAC 58.053 32.000 21.95 4.86 41.18 3.18
3915 7967 6.762661 AGCAAAACTACAAATGCATTTTCACT 59.237 30.769 21.95 7.63 41.18 3.41
3916 7968 7.280652 AGCAAAACTACAAATGCATTTTCACTT 59.719 29.630 21.95 9.21 41.18 3.16
3917 7969 7.373966 GCAAAACTACAAATGCATTTTCACTTG 59.626 33.333 21.95 18.51 38.63 3.16
3918 7970 8.389603 CAAAACTACAAATGCATTTTCACTTGT 58.610 29.630 21.95 17.77 39.37 3.16
3919 7971 9.593134 AAAACTACAAATGCATTTTCACTTGTA 57.407 25.926 21.95 17.93 37.54 2.41
3922 7974 8.219436 CTACAAATGCATTTTCACTTGTAGTG 57.781 34.615 25.26 14.53 44.82 2.74
3923 7975 5.463061 ACAAATGCATTTTCACTTGTAGTGC 59.537 36.000 21.95 0.00 45.54 4.40
3924 7976 5.458041 AATGCATTTTCACTTGTAGTGCT 57.542 34.783 5.99 0.00 45.54 4.40
3925 7977 4.227512 TGCATTTTCACTTGTAGTGCTG 57.772 40.909 1.98 0.00 45.54 4.41
3926 7978 3.004629 TGCATTTTCACTTGTAGTGCTGG 59.995 43.478 1.98 0.00 45.54 4.85
3927 7979 3.568538 CATTTTCACTTGTAGTGCTGGC 58.431 45.455 1.98 0.00 45.54 4.85
3928 7980 2.340210 TTTCACTTGTAGTGCTGGCA 57.660 45.000 1.98 0.00 45.54 4.92
3929 7981 2.566833 TTCACTTGTAGTGCTGGCAT 57.433 45.000 0.00 0.00 45.54 4.40
3930 7982 2.566833 TCACTTGTAGTGCTGGCATT 57.433 45.000 0.00 0.00 45.54 3.56
3931 7983 2.862541 TCACTTGTAGTGCTGGCATTT 58.137 42.857 0.00 0.00 45.54 2.32
3932 7984 3.221771 TCACTTGTAGTGCTGGCATTTT 58.778 40.909 0.00 0.00 45.54 1.82
3933 7985 3.004629 TCACTTGTAGTGCTGGCATTTTG 59.995 43.478 0.00 0.00 45.54 2.44
3934 7986 2.288395 ACTTGTAGTGCTGGCATTTTGC 60.288 45.455 0.00 0.00 44.08 3.68
3949 8001 6.833342 GCATTTTGCCTTTGAAGTATATGG 57.167 37.500 0.00 0.00 37.42 2.74
3950 8002 5.754890 GCATTTTGCCTTTGAAGTATATGGG 59.245 40.000 0.00 0.00 37.42 4.00
3951 8003 5.337578 TTTTGCCTTTGAAGTATATGGGC 57.662 39.130 0.00 0.00 38.67 5.36
3952 8004 2.944129 TGCCTTTGAAGTATATGGGCC 58.056 47.619 0.00 0.00 37.55 5.80
3953 8005 2.513738 TGCCTTTGAAGTATATGGGCCT 59.486 45.455 4.53 0.00 37.55 5.19
3954 8006 3.052944 TGCCTTTGAAGTATATGGGCCTT 60.053 43.478 4.53 0.00 37.55 4.35
3955 8007 3.960755 GCCTTTGAAGTATATGGGCCTTT 59.039 43.478 4.53 0.00 32.86 3.11
3956 8008 4.038042 GCCTTTGAAGTATATGGGCCTTTC 59.962 45.833 4.53 0.17 32.86 2.62
3957 8009 5.200483 CCTTTGAAGTATATGGGCCTTTCA 58.800 41.667 4.53 2.83 0.00 2.69
3958 8010 5.300286 CCTTTGAAGTATATGGGCCTTTCAG 59.700 44.000 4.53 0.00 0.00 3.02
3959 8011 5.450818 TTGAAGTATATGGGCCTTTCAGT 57.549 39.130 4.53 0.00 0.00 3.41
3960 8012 6.569127 TTGAAGTATATGGGCCTTTCAGTA 57.431 37.500 4.53 0.00 0.00 2.74
3961 8013 6.569127 TGAAGTATATGGGCCTTTCAGTAA 57.431 37.500 4.53 0.00 0.00 2.24
3962 8014 6.591935 TGAAGTATATGGGCCTTTCAGTAAG 58.408 40.000 4.53 0.00 0.00 2.34
3963 8015 6.157994 TGAAGTATATGGGCCTTTCAGTAAGT 59.842 38.462 4.53 0.00 31.56 2.24
3964 8016 5.930135 AGTATATGGGCCTTTCAGTAAGTG 58.070 41.667 4.53 0.00 31.56 3.16
3965 8017 5.665812 AGTATATGGGCCTTTCAGTAAGTGA 59.334 40.000 4.53 0.00 31.56 3.41
3966 8018 2.561478 TGGGCCTTTCAGTAAGTGAC 57.439 50.000 4.53 0.00 33.71 3.67
3967 8019 1.771854 TGGGCCTTTCAGTAAGTGACA 59.228 47.619 4.53 0.00 33.71 3.58
3968 8020 2.173782 TGGGCCTTTCAGTAAGTGACAA 59.826 45.455 4.53 0.00 33.71 3.18
3969 8021 3.219281 GGGCCTTTCAGTAAGTGACAAA 58.781 45.455 0.84 0.00 33.71 2.83
3970 8022 3.826729 GGGCCTTTCAGTAAGTGACAAAT 59.173 43.478 0.84 0.00 33.71 2.32
3971 8023 4.321230 GGGCCTTTCAGTAAGTGACAAATG 60.321 45.833 0.84 0.00 33.71 2.32
3972 8024 4.321230 GGCCTTTCAGTAAGTGACAAATGG 60.321 45.833 0.00 0.00 33.71 3.16
3973 8025 4.278419 GCCTTTCAGTAAGTGACAAATGGT 59.722 41.667 0.00 0.00 33.71 3.55
3974 8026 5.221244 GCCTTTCAGTAAGTGACAAATGGTT 60.221 40.000 0.00 0.00 33.71 3.67
3975 8027 6.208644 CCTTTCAGTAAGTGACAAATGGTTG 58.791 40.000 0.00 0.00 33.71 3.77
3976 8028 6.039270 CCTTTCAGTAAGTGACAAATGGTTGA 59.961 38.462 0.00 0.00 33.71 3.18
3977 8029 6.618287 TTCAGTAAGTGACAAATGGTTGAG 57.382 37.500 0.00 0.00 38.20 3.02
3978 8030 5.680619 TCAGTAAGTGACAAATGGTTGAGT 58.319 37.500 0.00 0.00 38.20 3.41
3979 8031 6.822442 TCAGTAAGTGACAAATGGTTGAGTA 58.178 36.000 0.00 0.00 38.20 2.59
3980 8032 7.276658 TCAGTAAGTGACAAATGGTTGAGTAA 58.723 34.615 0.00 0.00 38.20 2.24
3981 8033 7.936847 TCAGTAAGTGACAAATGGTTGAGTAAT 59.063 33.333 0.00 0.00 38.20 1.89
3982 8034 8.567948 CAGTAAGTGACAAATGGTTGAGTAATT 58.432 33.333 0.00 0.00 38.20 1.40
3983 8035 8.784043 AGTAAGTGACAAATGGTTGAGTAATTC 58.216 33.333 0.00 0.00 38.20 2.17
3984 8036 6.575162 AGTGACAAATGGTTGAGTAATTCC 57.425 37.500 0.00 0.00 38.20 3.01
3985 8037 5.476945 AGTGACAAATGGTTGAGTAATTCCC 59.523 40.000 0.00 0.00 38.20 3.97
3986 8038 5.242838 GTGACAAATGGTTGAGTAATTCCCA 59.757 40.000 0.00 0.00 38.20 4.37
3987 8039 5.835819 TGACAAATGGTTGAGTAATTCCCAA 59.164 36.000 0.00 0.00 38.20 4.12
3988 8040 6.496565 TGACAAATGGTTGAGTAATTCCCAAT 59.503 34.615 0.00 0.00 38.20 3.16
3989 8041 7.671819 TGACAAATGGTTGAGTAATTCCCAATA 59.328 33.333 0.00 0.00 38.20 1.90
3990 8042 8.066612 ACAAATGGTTGAGTAATTCCCAATAG 57.933 34.615 0.00 0.00 38.20 1.73
3991 8043 7.124147 ACAAATGGTTGAGTAATTCCCAATAGG 59.876 37.037 0.00 0.00 38.20 2.57
3992 8044 5.789574 TGGTTGAGTAATTCCCAATAGGT 57.210 39.130 0.00 0.00 36.75 3.08
3993 8045 6.147437 TGGTTGAGTAATTCCCAATAGGTT 57.853 37.500 0.00 0.00 36.75 3.50
3994 8046 6.557568 TGGTTGAGTAATTCCCAATAGGTTT 58.442 36.000 0.00 0.00 36.75 3.27
3995 8047 7.013834 TGGTTGAGTAATTCCCAATAGGTTTT 58.986 34.615 0.00 0.00 36.75 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.173481 TTCGCTCGCTCATTGTAGCT 59.827 50.000 0.00 0.00 40.49 3.32
4 5 1.070975 CATTCGCTCGCTCATTGTAGC 60.071 52.381 0.00 0.00 39.21 3.58
23 24 3.826157 CTGGCTACTTTCCATGGTTTTCA 59.174 43.478 12.58 0.60 32.37 2.69
29 30 2.749621 GTTCACTGGCTACTTTCCATGG 59.250 50.000 4.97 4.97 32.37 3.66
80 81 6.265422 AGTTTTTCTCCCCTGTCATAACAAAG 59.735 38.462 0.00 0.00 34.24 2.77
82 83 5.701224 AGTTTTTCTCCCCTGTCATAACAA 58.299 37.500 0.00 0.00 34.24 2.83
88 89 3.181443 GGAAGAGTTTTTCTCCCCTGTCA 60.181 47.826 0.00 0.00 43.71 3.58
91 92 2.427506 CGGAAGAGTTTTTCTCCCCTG 58.572 52.381 0.00 0.00 43.71 4.45
92 93 1.351350 CCGGAAGAGTTTTTCTCCCCT 59.649 52.381 0.00 0.00 43.71 4.79
110 111 3.551890 CCAAATGTTAGATCGTCTCACCG 59.448 47.826 0.00 0.00 0.00 4.94
111 112 3.309954 GCCAAATGTTAGATCGTCTCACC 59.690 47.826 0.00 0.00 0.00 4.02
117 118 4.201950 GCTTCATGCCAAATGTTAGATCGT 60.202 41.667 0.00 0.00 35.15 3.73
121 122 3.342719 TCGCTTCATGCCAAATGTTAGA 58.657 40.909 0.00 0.00 38.78 2.10
161 162 1.154035 GCAATTGCGTACCACCTGC 60.154 57.895 15.87 0.00 0.00 4.85
174 175 1.224592 CCCTGGGTAGCGAGCAATT 59.775 57.895 3.97 0.00 0.00 2.32
191 192 4.440145 TACACCCCGTGTAGGTCC 57.560 61.111 0.54 0.00 45.56 4.46
206 207 1.049402 GTAGCCCTGGTGATCCCTAC 58.951 60.000 0.00 0.00 0.00 3.18
215 216 0.251922 TACAAGACCGTAGCCCTGGT 60.252 55.000 0.00 0.00 42.42 4.00
217 218 1.183549 AGTACAAGACCGTAGCCCTG 58.816 55.000 0.00 0.00 0.00 4.45
238 239 3.566322 CCGGTTGGAAATAAACACACTGA 59.434 43.478 0.00 0.00 37.49 3.41
257 258 4.963276 AATATGTGTCATTTGTGTCCGG 57.037 40.909 0.00 0.00 0.00 5.14
258 259 5.572511 CCAAAATATGTGTCATTTGTGTCCG 59.427 40.000 0.00 0.00 32.29 4.79
259 260 5.348451 GCCAAAATATGTGTCATTTGTGTCC 59.652 40.000 0.00 0.00 32.29 4.02
260 261 6.158598 AGCCAAAATATGTGTCATTTGTGTC 58.841 36.000 0.00 0.00 32.29 3.67
320 321 7.121974 GTTCATACTTAATGGACCATCATCG 57.878 40.000 7.63 0.00 38.05 3.84
370 371 7.857456 TGCAGAGTAAATAAATACAGAAGGGA 58.143 34.615 0.00 0.00 0.00 4.20
380 381 9.777297 ACAAACCAAAATGCAGAGTAAATAAAT 57.223 25.926 0.00 0.00 0.00 1.40
388 389 6.048509 CCTAAAACAAACCAAAATGCAGAGT 58.951 36.000 0.00 0.00 0.00 3.24
390 391 5.983540 ACCTAAAACAAACCAAAATGCAGA 58.016 33.333 0.00 0.00 0.00 4.26
392 393 5.983540 AGACCTAAAACAAACCAAAATGCA 58.016 33.333 0.00 0.00 0.00 3.96
393 394 6.145534 GCTAGACCTAAAACAAACCAAAATGC 59.854 38.462 0.00 0.00 0.00 3.56
410 411 8.635765 TGATCAAAATTTACAAAGCTAGACCT 57.364 30.769 0.00 0.00 0.00 3.85
411 412 9.346725 CTTGATCAAAATTTACAAAGCTAGACC 57.653 33.333 9.88 0.00 0.00 3.85
561 566 5.829924 AGCTTTCTCCTCAATCAAACTTTCA 59.170 36.000 0.00 0.00 0.00 2.69
562 567 6.324561 AGCTTTCTCCTCAATCAAACTTTC 57.675 37.500 0.00 0.00 0.00 2.62
612 617 7.551617 CCTAGGTCGTGGTTCATATTTTTACTT 59.448 37.037 0.00 0.00 0.00 2.24
633 654 4.153835 CGTATTAGCTTACGACCTCCTAGG 59.846 50.000 11.69 0.82 46.02 3.02
634 655 4.378253 GCGTATTAGCTTACGACCTCCTAG 60.378 50.000 19.51 0.00 46.02 3.02
647 668 7.148407 GGTGCATATTTATTCTGCGTATTAGCT 60.148 37.037 0.00 0.00 38.75 3.32
648 669 6.961554 GGTGCATATTTATTCTGCGTATTAGC 59.038 38.462 0.00 0.00 38.75 3.09
649 670 7.173419 CGGTGCATATTTATTCTGCGTATTAG 58.827 38.462 0.00 0.00 38.75 1.73
650 671 6.091577 CCGGTGCATATTTATTCTGCGTATTA 59.908 38.462 0.00 0.00 38.75 0.98
651 672 5.106712 CCGGTGCATATTTATTCTGCGTATT 60.107 40.000 0.00 0.00 38.75 1.89
653 674 3.743911 CCGGTGCATATTTATTCTGCGTA 59.256 43.478 0.00 0.00 38.75 4.42
654 675 2.548057 CCGGTGCATATTTATTCTGCGT 59.452 45.455 0.00 0.00 38.75 5.24
655 676 2.665519 GCCGGTGCATATTTATTCTGCG 60.666 50.000 1.90 0.00 38.75 5.18
656 677 2.665519 CGCCGGTGCATATTTATTCTGC 60.666 50.000 0.00 0.00 37.32 4.26
657 678 2.095768 CCGCCGGTGCATATTTATTCTG 60.096 50.000 10.27 0.00 37.32 3.02
658 679 2.151202 CCGCCGGTGCATATTTATTCT 58.849 47.619 10.27 0.00 37.32 2.40
659 680 2.095919 GTCCGCCGGTGCATATTTATTC 60.096 50.000 10.27 0.00 37.32 1.75
660 681 1.877443 GTCCGCCGGTGCATATTTATT 59.123 47.619 10.27 0.00 37.32 1.40
661 682 1.202710 TGTCCGCCGGTGCATATTTAT 60.203 47.619 10.27 0.00 37.32 1.40
662 683 0.178301 TGTCCGCCGGTGCATATTTA 59.822 50.000 10.27 0.00 37.32 1.40
663 684 1.078072 TGTCCGCCGGTGCATATTT 60.078 52.632 10.27 0.00 37.32 1.40
664 685 1.523711 CTGTCCGCCGGTGCATATT 60.524 57.895 10.27 0.00 37.32 1.28
665 686 2.108976 CTGTCCGCCGGTGCATAT 59.891 61.111 10.27 0.00 37.32 1.78
666 687 2.949909 AACTGTCCGCCGGTGCATA 61.950 57.895 10.27 0.00 37.32 3.14
667 688 4.329545 AACTGTCCGCCGGTGCAT 62.330 61.111 10.27 0.00 37.32 3.96
716 737 1.064685 TGCGGAGGTGACATCTCTAGA 60.065 52.381 15.28 0.00 0.00 2.43
764 785 3.242284 CGTACGGCAATGAAATCGACATT 60.242 43.478 7.57 0.00 38.30 2.71
814 835 7.500559 AGCTCAAGAATGTTATATTCCAGAACC 59.499 37.037 0.00 0.00 0.00 3.62
815 836 8.443953 AGCTCAAGAATGTTATATTCCAGAAC 57.556 34.615 0.00 0.00 0.00 3.01
816 837 8.267183 TGAGCTCAAGAATGTTATATTCCAGAA 58.733 33.333 15.67 0.00 0.00 3.02
1012 1046 1.317431 ACTACCGCGCTGTACATGGA 61.317 55.000 7.66 0.00 0.00 3.41
1021 1055 2.707849 CCAGTACCACTACCGCGCT 61.708 63.158 5.56 0.00 0.00 5.92
1022 1056 2.202703 CCAGTACCACTACCGCGC 60.203 66.667 0.00 0.00 0.00 6.86
1287 1327 1.063811 GACGTAGCCGGAGTACTGC 59.936 63.158 5.05 0.73 38.78 4.40
1920 2096 2.425143 AGTCATCGAGGTACGGGTTA 57.575 50.000 0.00 0.00 42.82 2.85
2124 2309 3.062466 CTCCCGTCTGGCGACTCA 61.062 66.667 1.87 0.00 44.77 3.41
2172 2357 6.476243 AAGAGCGTATATTTGTTTCGTGTT 57.524 33.333 0.00 0.00 0.00 3.32
2204 2392 6.764308 TTTCTTGGTGATGATGAGATTTCC 57.236 37.500 0.00 0.00 0.00 3.13
2221 2409 5.164119 GCACTTCAATCGAGCAAATTTCTTG 60.164 40.000 0.00 0.00 0.00 3.02
2232 2766 6.292061 GCTAACTAATCAGCACTTCAATCGAG 60.292 42.308 0.00 0.00 37.73 4.04
2240 2774 4.177026 CAGACGCTAACTAATCAGCACTT 58.823 43.478 0.00 0.00 37.66 3.16
2439 3028 3.815401 GTGCAAGTTACTGTGGACAGAAT 59.185 43.478 13.74 0.00 46.59 2.40
2531 3203 7.994334 AGGTACTGAAAATGTTTACCTGTACAA 59.006 33.333 18.17 0.00 40.86 2.41
2549 3241 0.402887 TGGTGTCTCGGAGGTACTGA 59.597 55.000 4.96 0.00 41.55 3.41
2609 3409 0.739462 CCGCTGTGGTCGAATTAGCA 60.739 55.000 0.00 0.00 34.16 3.49
2621 3425 2.382746 CGTCCATGTCACCGCTGTG 61.383 63.158 1.20 1.20 44.18 3.66
2650 3454 1.135721 GAGTACCTCGTGGCGGTAATT 59.864 52.381 2.76 0.00 38.64 1.40
2671 3475 2.842496 TGCCAGATTGAGATCCTTGACT 59.158 45.455 0.00 0.00 32.44 3.41
2749 3553 6.863322 ACAGGGATTAAGGGTTATTGCATAT 58.137 36.000 0.00 0.00 0.00 1.78
2750 3554 6.274322 ACAGGGATTAAGGGTTATTGCATA 57.726 37.500 0.00 0.00 0.00 3.14
2769 3581 4.966965 ATCACAAGACTAGTACGACAGG 57.033 45.455 0.00 0.00 0.00 4.00
2772 3584 5.306532 TCCAATCACAAGACTAGTACGAC 57.693 43.478 0.00 0.00 0.00 4.34
2775 3587 5.874810 TGCAATCCAATCACAAGACTAGTAC 59.125 40.000 0.00 0.00 0.00 2.73
2798 3615 7.517734 GCCATAATTCAGTTAGCATGCAATTTG 60.518 37.037 21.98 12.69 0.00 2.32
2799 3616 6.480981 GCCATAATTCAGTTAGCATGCAATTT 59.519 34.615 21.98 0.61 0.00 1.82
2800 3617 5.987347 GCCATAATTCAGTTAGCATGCAATT 59.013 36.000 21.98 17.01 0.00 2.32
2803 3620 3.318839 GGCCATAATTCAGTTAGCATGCA 59.681 43.478 21.98 2.77 0.00 3.96
2804 3621 3.318839 TGGCCATAATTCAGTTAGCATGC 59.681 43.478 10.51 10.51 0.00 4.06
2805 3622 5.518848 TTGGCCATAATTCAGTTAGCATG 57.481 39.130 6.09 0.00 0.00 4.06
2806 3623 6.552350 AGATTTGGCCATAATTCAGTTAGCAT 59.448 34.615 6.09 0.00 0.00 3.79
2896 3716 3.242867 CTGGAAGCTAGGGACCATATGA 58.757 50.000 3.65 0.00 0.00 2.15
2980 3815 0.603065 TCGATCATGGGCTCCATACG 59.397 55.000 6.42 11.57 43.15 3.06
3000 3835 3.306364 CCTGTAGGACCAGCAGTATATGC 60.306 52.174 12.43 0.00 47.00 3.14
3016 3853 3.364964 CCGCTTGCAAACTTAACCTGTAG 60.365 47.826 0.00 0.00 0.00 2.74
3021 3858 0.666274 GCCCGCTTGCAAACTTAACC 60.666 55.000 0.00 0.00 0.00 2.85
3023 3860 1.284408 CGCCCGCTTGCAAACTTAA 59.716 52.632 0.00 0.00 0.00 1.85
3077 3923 9.166222 AGGGGTGTTGATATTATATCACACTTA 57.834 33.333 26.79 11.17 34.09 2.24
3090 3938 6.071108 CGAGATCTAATGAGGGGTGTTGATAT 60.071 42.308 0.00 0.00 0.00 1.63
3091 3939 5.243954 CGAGATCTAATGAGGGGTGTTGATA 59.756 44.000 0.00 0.00 0.00 2.15
3093 3941 3.384789 CGAGATCTAATGAGGGGTGTTGA 59.615 47.826 0.00 0.00 0.00 3.18
3095 3943 3.643237 TCGAGATCTAATGAGGGGTGTT 58.357 45.455 0.00 0.00 0.00 3.32
3096 3944 3.314307 TCGAGATCTAATGAGGGGTGT 57.686 47.619 0.00 0.00 0.00 4.16
3097 3945 3.891977 TCTTCGAGATCTAATGAGGGGTG 59.108 47.826 0.00 0.00 0.00 4.61
3098 3946 4.186077 TCTTCGAGATCTAATGAGGGGT 57.814 45.455 0.00 0.00 0.00 4.95
3099 3947 4.586841 ACTTCTTCGAGATCTAATGAGGGG 59.413 45.833 0.00 0.00 0.00 4.79
3140 3989 1.134340 ACGTACACAAGGTGGAGCAAA 60.134 47.619 1.07 0.00 37.94 3.68
3144 3993 2.132762 GACAACGTACACAAGGTGGAG 58.867 52.381 1.07 0.00 37.94 3.86
3168 4017 2.889852 GGACGTGTCCCTAACATTCTC 58.110 52.381 7.86 0.00 43.94 2.87
3232 4086 3.694538 AAAGCACAATGCCCCCGC 61.695 61.111 0.00 0.00 46.52 6.13
3233 4087 2.262292 CAAAGCACAATGCCCCCG 59.738 61.111 0.00 0.00 46.52 5.73
3237 4091 1.353076 GCTAAGCAAAGCACAATGCC 58.647 50.000 5.51 0.00 46.52 4.40
3275 4129 4.293662 AGAAAGATGGGTCTCAACTTCC 57.706 45.455 0.00 0.00 37.48 3.46
3282 4136 9.103861 CTGAAATTTAGTAGAAAGATGGGTCTC 57.896 37.037 0.00 0.00 32.15 3.36
3284 4138 8.794335 ACTGAAATTTAGTAGAAAGATGGGTC 57.206 34.615 0.00 0.00 0.00 4.46
3297 4151 8.837389 GGCCGAATCTTATAACTGAAATTTAGT 58.163 33.333 0.00 0.00 0.00 2.24
3300 4154 7.881775 AGGCCGAATCTTATAACTGAAATTT 57.118 32.000 0.00 0.00 0.00 1.82
3304 4158 6.099269 ACCTTAGGCCGAATCTTATAACTGAA 59.901 38.462 0.00 0.00 0.00 3.02
3313 4167 2.092914 CCAGAACCTTAGGCCGAATCTT 60.093 50.000 0.00 0.00 0.00 2.40
3318 4172 2.987125 GCCAGAACCTTAGGCCGA 59.013 61.111 0.00 0.00 42.58 5.54
3322 4176 2.094675 CATGTTGGCCAGAACCTTAGG 58.905 52.381 5.11 0.00 0.00 2.69
3333 4187 2.489938 TCAGACCTAACATGTTGGCC 57.510 50.000 21.42 12.35 0.00 5.36
3371 4225 1.414919 TGAAGGCGGTATGGGTATCAC 59.585 52.381 0.00 0.00 0.00 3.06
3381 4235 2.092049 TCTACCTCTCATGAAGGCGGTA 60.092 50.000 18.38 11.77 33.22 4.02
3384 4238 3.570125 TGTATCTACCTCTCATGAAGGCG 59.430 47.826 18.38 12.40 0.00 5.52
3393 4247 6.013379 TCCTTCCATGATGTATCTACCTCTC 58.987 44.000 0.00 0.00 0.00 3.20
3399 4253 7.092444 ACCAAAACTCCTTCCATGATGTATCTA 60.092 37.037 0.00 0.00 0.00 1.98
3402 4256 5.653769 CACCAAAACTCCTTCCATGATGTAT 59.346 40.000 0.00 0.00 0.00 2.29
3407 4261 2.158475 AGCACCAAAACTCCTTCCATGA 60.158 45.455 0.00 0.00 0.00 3.07
3408 4262 2.242043 AGCACCAAAACTCCTTCCATG 58.758 47.619 0.00 0.00 0.00 3.66
3442 4296 9.546428 CACTTGTTTGGTATGATGTATCTCATA 57.454 33.333 0.00 0.00 37.13 2.15
3443 4297 7.500227 CCACTTGTTTGGTATGATGTATCTCAT 59.500 37.037 0.00 0.00 39.22 2.90
3445 4299 7.047891 TCCACTTGTTTGGTATGATGTATCTC 58.952 38.462 0.00 0.00 37.93 2.75
3446 4300 6.957631 TCCACTTGTTTGGTATGATGTATCT 58.042 36.000 0.00 0.00 37.93 1.98
3448 4302 6.599244 CACTCCACTTGTTTGGTATGATGTAT 59.401 38.462 0.00 0.00 37.93 2.29
3449 4303 5.937540 CACTCCACTTGTTTGGTATGATGTA 59.062 40.000 0.00 0.00 37.93 2.29
3450 4304 4.761739 CACTCCACTTGTTTGGTATGATGT 59.238 41.667 0.00 0.00 37.93 3.06
3459 7508 5.437289 TTCATAAGCACTCCACTTGTTTG 57.563 39.130 0.00 0.00 0.00 2.93
3484 7534 4.640771 TGTCATAGGCCTTTCAAAGTCT 57.359 40.909 12.58 0.00 0.00 3.24
3485 7535 5.183904 ACAATGTCATAGGCCTTTCAAAGTC 59.816 40.000 12.58 0.00 0.00 3.01
3487 7537 5.183713 TCACAATGTCATAGGCCTTTCAAAG 59.816 40.000 12.58 5.32 0.00 2.77
3488 7538 5.076182 TCACAATGTCATAGGCCTTTCAAA 58.924 37.500 12.58 0.00 0.00 2.69
3491 7541 4.702131 ACTTCACAATGTCATAGGCCTTTC 59.298 41.667 12.58 0.00 0.00 2.62
3506 7558 4.202223 GGTACAGAAGAGACCACTTCACAA 60.202 45.833 0.00 0.00 45.83 3.33
3507 7559 3.321111 GGTACAGAAGAGACCACTTCACA 59.679 47.826 0.00 0.00 45.83 3.58
3508 7560 3.321111 TGGTACAGAAGAGACCACTTCAC 59.679 47.826 0.00 0.00 45.83 3.18
3509 7561 3.572642 TGGTACAGAAGAGACCACTTCA 58.427 45.455 0.00 0.00 45.83 3.02
3510 7562 4.602340 TTGGTACAGAAGAGACCACTTC 57.398 45.455 0.00 0.00 42.91 3.01
3511 7563 5.071788 TCATTTGGTACAGAAGAGACCACTT 59.928 40.000 0.00 0.00 42.91 3.16
3512 7564 4.593206 TCATTTGGTACAGAAGAGACCACT 59.407 41.667 0.00 0.00 42.91 4.00
3513 7565 4.894784 TCATTTGGTACAGAAGAGACCAC 58.105 43.478 0.00 0.00 42.91 4.16
3514 7566 5.491070 CATCATTTGGTACAGAAGAGACCA 58.509 41.667 0.00 0.00 42.39 4.02
3515 7567 4.333926 GCATCATTTGGTACAGAAGAGACC 59.666 45.833 0.00 0.00 42.39 3.85
3516 7568 4.033358 CGCATCATTTGGTACAGAAGAGAC 59.967 45.833 0.00 0.00 42.39 3.36
3517 7569 4.081697 TCGCATCATTTGGTACAGAAGAGA 60.082 41.667 0.00 0.00 42.39 3.10
3518 7570 4.183865 TCGCATCATTTGGTACAGAAGAG 58.816 43.478 0.00 0.00 42.39 2.85
3519 7571 4.200838 TCGCATCATTTGGTACAGAAGA 57.799 40.909 0.00 0.00 42.39 2.87
3520 7572 4.944962 TTCGCATCATTTGGTACAGAAG 57.055 40.909 0.00 0.00 42.39 2.85
3521 7573 5.697473 TTTTCGCATCATTTGGTACAGAA 57.303 34.783 0.00 0.00 42.39 3.02
3522 7574 5.335583 CCTTTTTCGCATCATTTGGTACAGA 60.336 40.000 0.00 0.00 42.39 3.41
3523 7575 4.858692 CCTTTTTCGCATCATTTGGTACAG 59.141 41.667 0.00 0.00 42.39 2.74
3524 7576 4.804108 CCTTTTTCGCATCATTTGGTACA 58.196 39.130 0.00 0.00 0.00 2.90
3525 7577 3.612423 GCCTTTTTCGCATCATTTGGTAC 59.388 43.478 0.00 0.00 0.00 3.34
3526 7578 3.509575 AGCCTTTTTCGCATCATTTGGTA 59.490 39.130 0.00 0.00 0.00 3.25
3527 7579 2.299867 AGCCTTTTTCGCATCATTTGGT 59.700 40.909 0.00 0.00 0.00 3.67
3528 7580 2.963432 AGCCTTTTTCGCATCATTTGG 58.037 42.857 0.00 0.00 0.00 3.28
3529 7581 4.377635 CCAAAGCCTTTTTCGCATCATTTG 60.378 41.667 0.00 0.00 0.00 2.32
3530 7582 3.747529 CCAAAGCCTTTTTCGCATCATTT 59.252 39.130 0.00 0.00 0.00 2.32
3531 7583 3.244181 ACCAAAGCCTTTTTCGCATCATT 60.244 39.130 0.00 0.00 0.00 2.57
3532 7584 2.299867 ACCAAAGCCTTTTTCGCATCAT 59.700 40.909 0.00 0.00 0.00 2.45
3533 7585 1.686052 ACCAAAGCCTTTTTCGCATCA 59.314 42.857 0.00 0.00 0.00 3.07
3534 7586 2.061028 CACCAAAGCCTTTTTCGCATC 58.939 47.619 0.00 0.00 0.00 3.91
3535 7587 1.686052 TCACCAAAGCCTTTTTCGCAT 59.314 42.857 0.00 0.00 0.00 4.73
3536 7588 1.107114 TCACCAAAGCCTTTTTCGCA 58.893 45.000 0.00 0.00 0.00 5.10
3537 7589 2.438868 ATCACCAAAGCCTTTTTCGC 57.561 45.000 0.00 0.00 0.00 4.70
3538 7590 4.766404 AGTATCACCAAAGCCTTTTTCG 57.234 40.909 0.00 0.00 0.00 3.46
3567 7619 0.837272 CATAGTTCCCATCACCCCGT 59.163 55.000 0.00 0.00 0.00 5.28
3569 7621 1.564348 ACACATAGTTCCCATCACCCC 59.436 52.381 0.00 0.00 0.00 4.95
3572 7624 2.017049 GCCACACATAGTTCCCATCAC 58.983 52.381 0.00 0.00 0.00 3.06
3579 7631 0.462047 CCTCCCGCCACACATAGTTC 60.462 60.000 0.00 0.00 0.00 3.01
3587 7639 4.424711 GGCAATCCTCCCGCCACA 62.425 66.667 0.00 0.00 45.52 4.17
3592 7644 1.133792 ACCTTTATGGCAATCCTCCCG 60.134 52.381 0.00 0.00 40.22 5.14
3596 7648 5.598417 GGTCATTAACCTTTATGGCAATCCT 59.402 40.000 0.00 0.00 45.45 3.24
3610 7662 4.327680 AGAGAGCAAGTTGGTCATTAACC 58.672 43.478 30.80 15.15 46.52 2.85
3611 7663 5.693814 CAAGAGAGCAAGTTGGTCATTAAC 58.306 41.667 30.80 17.97 46.52 2.01
3612 7664 4.216257 GCAAGAGAGCAAGTTGGTCATTAA 59.784 41.667 30.80 0.00 46.52 1.40
3613 7665 3.753272 GCAAGAGAGCAAGTTGGTCATTA 59.247 43.478 30.80 0.00 46.52 1.90
3614 7666 2.555757 GCAAGAGAGCAAGTTGGTCATT 59.444 45.455 30.80 22.83 46.52 2.57
3615 7667 2.157738 GCAAGAGAGCAAGTTGGTCAT 58.842 47.619 30.80 19.05 46.52 3.06
3616 7668 1.141657 AGCAAGAGAGCAAGTTGGTCA 59.858 47.619 30.80 0.00 46.52 4.02
3617 7669 1.534595 CAGCAAGAGAGCAAGTTGGTC 59.465 52.381 24.29 24.29 44.62 4.02
3618 7670 1.133976 ACAGCAAGAGAGCAAGTTGGT 60.134 47.619 7.41 7.41 36.85 3.67
3619 7671 1.602311 ACAGCAAGAGAGCAAGTTGG 58.398 50.000 4.75 0.00 36.85 3.77
3620 7672 3.065786 TCAAACAGCAAGAGAGCAAGTTG 59.934 43.478 0.00 0.00 35.93 3.16
3621 7673 3.065925 GTCAAACAGCAAGAGAGCAAGTT 59.934 43.478 0.00 0.00 36.85 2.66
3622 7674 2.615912 GTCAAACAGCAAGAGAGCAAGT 59.384 45.455 0.00 0.00 36.85 3.16
3623 7675 2.615447 TGTCAAACAGCAAGAGAGCAAG 59.385 45.455 0.00 0.00 36.85 4.01
3624 7676 2.642427 TGTCAAACAGCAAGAGAGCAA 58.358 42.857 0.00 0.00 36.85 3.91
3625 7677 2.330440 TGTCAAACAGCAAGAGAGCA 57.670 45.000 0.00 0.00 36.85 4.26
3626 7678 3.999663 ACTATGTCAAACAGCAAGAGAGC 59.000 43.478 0.00 0.00 0.00 4.09
3627 7679 5.290643 GCTACTATGTCAAACAGCAAGAGAG 59.709 44.000 0.00 0.00 0.00 3.20
3628 7680 5.047021 AGCTACTATGTCAAACAGCAAGAGA 60.047 40.000 0.00 0.00 0.00 3.10
3629 7681 5.063186 CAGCTACTATGTCAAACAGCAAGAG 59.937 44.000 0.00 0.00 0.00 2.85
3630 7682 4.931601 CAGCTACTATGTCAAACAGCAAGA 59.068 41.667 0.00 0.00 0.00 3.02
3631 7683 4.931601 TCAGCTACTATGTCAAACAGCAAG 59.068 41.667 0.00 0.00 0.00 4.01
3632 7684 4.690748 GTCAGCTACTATGTCAAACAGCAA 59.309 41.667 0.00 0.00 0.00 3.91
3633 7685 4.245660 GTCAGCTACTATGTCAAACAGCA 58.754 43.478 0.00 0.00 0.00 4.41
3634 7686 3.304559 CGTCAGCTACTATGTCAAACAGC 59.695 47.826 0.00 0.00 0.00 4.40
3635 7687 3.859961 CCGTCAGCTACTATGTCAAACAG 59.140 47.826 0.00 0.00 0.00 3.16
3654 7706 1.102978 AACAAGCAAAGCAAGTCCGT 58.897 45.000 0.00 0.00 0.00 4.69
3677 7729 4.572985 TCAAACCTTGTCATTGAGCTTG 57.427 40.909 0.00 0.00 0.00 4.01
3687 7739 1.067846 GCCCGGAAATCAAACCTTGTC 60.068 52.381 0.73 0.00 0.00 3.18
3691 7743 1.256812 CAAGCCCGGAAATCAAACCT 58.743 50.000 0.73 0.00 0.00 3.50
3746 7798 9.465199 TCCTTCATCAGAAAAATGACATCATTA 57.535 29.630 7.52 0.00 45.06 1.90
3752 7804 7.067859 GGATCATCCTTCATCAGAAAAATGACA 59.932 37.037 0.00 0.00 33.01 3.58
3753 7805 7.424001 GGATCATCCTTCATCAGAAAAATGAC 58.576 38.462 0.00 0.00 33.01 3.06
3761 7813 4.162131 TCAAACGGATCATCCTTCATCAGA 59.838 41.667 1.10 0.00 33.30 3.27
3762 7814 4.445453 TCAAACGGATCATCCTTCATCAG 58.555 43.478 1.10 0.00 33.30 2.90
3778 7830 6.541111 ACTTAAAGTTTCTAGCCTCAAACG 57.459 37.500 0.00 0.00 37.54 3.60
3780 7832 8.967664 TTGTACTTAAAGTTTCTAGCCTCAAA 57.032 30.769 0.00 0.00 0.00 2.69
3822 7874 9.354673 TGAAAACTTATCTTGAGTCCAGAATTT 57.645 29.630 0.00 0.00 0.00 1.82
3823 7875 8.787852 GTGAAAACTTATCTTGAGTCCAGAATT 58.212 33.333 0.00 0.00 0.00 2.17
3824 7876 7.939039 TGTGAAAACTTATCTTGAGTCCAGAAT 59.061 33.333 0.00 0.00 0.00 2.40
3825 7877 7.279615 TGTGAAAACTTATCTTGAGTCCAGAA 58.720 34.615 0.00 0.00 0.00 3.02
3826 7878 6.826668 TGTGAAAACTTATCTTGAGTCCAGA 58.173 36.000 0.00 0.00 0.00 3.86
3827 7879 7.442364 TCTTGTGAAAACTTATCTTGAGTCCAG 59.558 37.037 0.00 0.00 0.00 3.86
3828 7880 7.279615 TCTTGTGAAAACTTATCTTGAGTCCA 58.720 34.615 0.00 0.00 0.00 4.02
3829 7881 7.442666 ACTCTTGTGAAAACTTATCTTGAGTCC 59.557 37.037 0.00 0.00 0.00 3.85
3830 7882 8.279103 CACTCTTGTGAAAACTTATCTTGAGTC 58.721 37.037 0.00 0.00 46.55 3.36
3831 7883 8.147642 CACTCTTGTGAAAACTTATCTTGAGT 57.852 34.615 0.00 0.00 46.55 3.41
3861 7913 2.745968 ACTGCTTCCCCAAGACAAAAA 58.254 42.857 0.00 0.00 0.00 1.94
3862 7914 2.430332 CAACTGCTTCCCCAAGACAAAA 59.570 45.455 0.00 0.00 0.00 2.44
3863 7915 2.031120 CAACTGCTTCCCCAAGACAAA 58.969 47.619 0.00 0.00 0.00 2.83
3864 7916 1.214175 TCAACTGCTTCCCCAAGACAA 59.786 47.619 0.00 0.00 0.00 3.18
3865 7917 0.843309 TCAACTGCTTCCCCAAGACA 59.157 50.000 0.00 0.00 0.00 3.41
3866 7918 1.239347 GTCAACTGCTTCCCCAAGAC 58.761 55.000 0.00 0.00 0.00 3.01
3867 7919 0.843309 TGTCAACTGCTTCCCCAAGA 59.157 50.000 0.00 0.00 0.00 3.02
3868 7920 1.691196 TTGTCAACTGCTTCCCCAAG 58.309 50.000 0.00 0.00 0.00 3.61
3869 7921 1.962807 CATTGTCAACTGCTTCCCCAA 59.037 47.619 0.00 0.00 0.00 4.12
3870 7922 1.144708 TCATTGTCAACTGCTTCCCCA 59.855 47.619 0.00 0.00 0.00 4.96
3871 7923 1.815003 CTCATTGTCAACTGCTTCCCC 59.185 52.381 0.00 0.00 0.00 4.81
3872 7924 1.200948 GCTCATTGTCAACTGCTTCCC 59.799 52.381 0.00 0.00 0.00 3.97
3873 7925 1.881973 TGCTCATTGTCAACTGCTTCC 59.118 47.619 7.48 0.00 0.00 3.46
3874 7926 3.631145 TTGCTCATTGTCAACTGCTTC 57.369 42.857 7.48 0.00 0.00 3.86
3875 7927 4.114794 GTTTTGCTCATTGTCAACTGCTT 58.885 39.130 7.48 0.00 0.00 3.91
3876 7928 3.382546 AGTTTTGCTCATTGTCAACTGCT 59.617 39.130 7.48 0.00 0.00 4.24
3877 7929 3.709987 AGTTTTGCTCATTGTCAACTGC 58.290 40.909 0.00 0.00 0.00 4.40
3878 7930 5.820131 TGTAGTTTTGCTCATTGTCAACTG 58.180 37.500 0.00 0.00 0.00 3.16
3879 7931 6.449635 TTGTAGTTTTGCTCATTGTCAACT 57.550 33.333 0.00 0.00 0.00 3.16
3880 7932 7.558137 CATTTGTAGTTTTGCTCATTGTCAAC 58.442 34.615 0.00 0.00 0.00 3.18
3881 7933 6.200665 GCATTTGTAGTTTTGCTCATTGTCAA 59.799 34.615 0.00 0.00 32.41 3.18
3882 7934 5.691305 GCATTTGTAGTTTTGCTCATTGTCA 59.309 36.000 0.00 0.00 32.41 3.58
3883 7935 5.691305 TGCATTTGTAGTTTTGCTCATTGTC 59.309 36.000 0.00 0.00 36.10 3.18
3884 7936 5.599732 TGCATTTGTAGTTTTGCTCATTGT 58.400 33.333 0.00 0.00 36.10 2.71
3885 7937 6.715344 ATGCATTTGTAGTTTTGCTCATTG 57.285 33.333 0.00 0.00 36.10 2.82
3886 7938 7.733402 AAATGCATTTGTAGTTTTGCTCATT 57.267 28.000 23.54 0.00 36.10 2.57
3887 7939 7.441760 TGAAAATGCATTTGTAGTTTTGCTCAT 59.558 29.630 24.74 4.25 36.10 2.90
3888 7940 6.760298 TGAAAATGCATTTGTAGTTTTGCTCA 59.240 30.769 24.74 16.50 36.10 4.26
3889 7941 7.042523 AGTGAAAATGCATTTGTAGTTTTGCTC 60.043 33.333 24.74 14.28 36.10 4.26
3890 7942 6.762661 AGTGAAAATGCATTTGTAGTTTTGCT 59.237 30.769 24.74 5.43 36.10 3.91
3891 7943 6.947258 AGTGAAAATGCATTTGTAGTTTTGC 58.053 32.000 24.74 0.72 28.87 3.68
3892 7944 8.389603 ACAAGTGAAAATGCATTTGTAGTTTTG 58.610 29.630 24.74 22.14 43.83 2.44
3893 7945 8.491331 ACAAGTGAAAATGCATTTGTAGTTTT 57.509 26.923 24.74 14.81 43.83 2.43
3910 7962 7.954705 GCAAAATGCCAGCACTACAAGTGAA 62.955 44.000 11.14 0.00 42.32 3.18
3911 7963 6.572848 GCAAAATGCCAGCACTACAAGTGA 62.573 45.833 11.14 0.00 42.32 3.41
3912 7964 4.401617 GCAAAATGCCAGCACTACAAGTG 61.402 47.826 2.65 2.65 42.49 3.16
3913 7965 2.288395 GCAAAATGCCAGCACTACAAGT 60.288 45.455 0.00 0.00 37.42 3.16
3914 7966 2.331194 GCAAAATGCCAGCACTACAAG 58.669 47.619 0.00 0.00 37.42 3.16
3915 7967 2.437200 GCAAAATGCCAGCACTACAA 57.563 45.000 0.00 0.00 37.42 2.41
3926 7978 5.754890 CCCATATACTTCAAAGGCAAAATGC 59.245 40.000 0.00 0.00 44.08 3.56
3927 7979 5.754890 GCCCATATACTTCAAAGGCAAAATG 59.245 40.000 0.00 0.00 38.79 2.32
3928 7980 5.163311 GGCCCATATACTTCAAAGGCAAAAT 60.163 40.000 0.00 0.00 40.75 1.82
3929 7981 4.161377 GGCCCATATACTTCAAAGGCAAAA 59.839 41.667 0.00 0.00 40.75 2.44
3930 7982 3.704061 GGCCCATATACTTCAAAGGCAAA 59.296 43.478 0.00 0.00 40.75 3.68
3931 7983 3.052944 AGGCCCATATACTTCAAAGGCAA 60.053 43.478 0.00 0.00 40.75 4.52
3932 7984 2.513738 AGGCCCATATACTTCAAAGGCA 59.486 45.455 0.00 0.00 40.75 4.75
3933 7985 3.229697 AGGCCCATATACTTCAAAGGC 57.770 47.619 0.00 0.00 38.21 4.35
3934 7986 5.200483 TGAAAGGCCCATATACTTCAAAGG 58.800 41.667 0.00 0.00 0.00 3.11
3935 7987 5.888161 ACTGAAAGGCCCATATACTTCAAAG 59.112 40.000 0.00 0.00 39.30 2.77
3936 7988 5.826643 ACTGAAAGGCCCATATACTTCAAA 58.173 37.500 0.00 0.00 39.30 2.69
3937 7989 5.450818 ACTGAAAGGCCCATATACTTCAA 57.549 39.130 0.00 0.00 39.30 2.69
3938 7990 6.157994 ACTTACTGAAAGGCCCATATACTTCA 59.842 38.462 0.00 0.00 39.73 3.02
3939 7991 6.483640 CACTTACTGAAAGGCCCATATACTTC 59.516 42.308 0.00 0.00 39.73 3.01
3940 7992 6.157994 TCACTTACTGAAAGGCCCATATACTT 59.842 38.462 0.00 0.00 39.73 2.24
3941 7993 5.665812 TCACTTACTGAAAGGCCCATATACT 59.334 40.000 0.00 0.00 39.73 2.12
3942 7994 5.758784 GTCACTTACTGAAAGGCCCATATAC 59.241 44.000 0.00 0.00 39.73 1.47
3943 7995 5.427157 TGTCACTTACTGAAAGGCCCATATA 59.573 40.000 0.00 0.00 39.73 0.86
3944 7996 4.227300 TGTCACTTACTGAAAGGCCCATAT 59.773 41.667 0.00 0.00 39.73 1.78
3945 7997 3.585289 TGTCACTTACTGAAAGGCCCATA 59.415 43.478 0.00 0.00 39.73 2.74
3946 7998 2.375174 TGTCACTTACTGAAAGGCCCAT 59.625 45.455 0.00 0.00 39.73 4.00
3947 7999 1.771854 TGTCACTTACTGAAAGGCCCA 59.228 47.619 0.00 0.00 39.73 5.36
3948 8000 2.561478 TGTCACTTACTGAAAGGCCC 57.439 50.000 0.00 0.00 39.73 5.80
3949 8001 4.321230 CCATTTGTCACTTACTGAAAGGCC 60.321 45.833 0.00 0.00 39.73 5.19
3950 8002 4.278419 ACCATTTGTCACTTACTGAAAGGC 59.722 41.667 0.00 0.00 39.73 4.35
3951 8003 6.039270 TCAACCATTTGTCACTTACTGAAAGG 59.961 38.462 0.00 0.00 35.40 3.11
3952 8004 7.026631 TCAACCATTTGTCACTTACTGAAAG 57.973 36.000 0.00 0.00 36.32 2.62
3953 8005 6.601613 ACTCAACCATTTGTCACTTACTGAAA 59.398 34.615 0.00 0.00 34.02 2.69
3954 8006 6.119536 ACTCAACCATTTGTCACTTACTGAA 58.880 36.000 0.00 0.00 34.02 3.02
3955 8007 5.680619 ACTCAACCATTTGTCACTTACTGA 58.319 37.500 0.00 0.00 34.02 3.41
3956 8008 7.490962 TTACTCAACCATTTGTCACTTACTG 57.509 36.000 0.00 0.00 34.02 2.74
3957 8009 8.691661 AATTACTCAACCATTTGTCACTTACT 57.308 30.769 0.00 0.00 34.02 2.24
3958 8010 8.021396 GGAATTACTCAACCATTTGTCACTTAC 58.979 37.037 0.00 0.00 34.02 2.34
3959 8011 7.175990 GGGAATTACTCAACCATTTGTCACTTA 59.824 37.037 0.00 0.00 34.02 2.24
3960 8012 6.015434 GGGAATTACTCAACCATTTGTCACTT 60.015 38.462 0.00 0.00 34.02 3.16
3961 8013 5.476945 GGGAATTACTCAACCATTTGTCACT 59.523 40.000 0.00 0.00 34.02 3.41
3962 8014 5.242838 TGGGAATTACTCAACCATTTGTCAC 59.757 40.000 0.00 0.00 34.02 3.67
3963 8015 5.389520 TGGGAATTACTCAACCATTTGTCA 58.610 37.500 0.00 0.00 34.02 3.58
3964 8016 5.975693 TGGGAATTACTCAACCATTTGTC 57.024 39.130 0.00 0.00 34.02 3.18
3965 8017 6.933514 ATTGGGAATTACTCAACCATTTGT 57.066 33.333 0.00 0.00 42.13 2.83
3966 8018 7.124147 ACCTATTGGGAATTACTCAACCATTTG 59.876 37.037 0.00 0.00 42.13 2.32
3967 8019 7.189087 ACCTATTGGGAATTACTCAACCATTT 58.811 34.615 0.00 0.00 42.13 2.32
3968 8020 6.741724 ACCTATTGGGAATTACTCAACCATT 58.258 36.000 0.00 0.00 42.13 3.16
3969 8021 6.341408 ACCTATTGGGAATTACTCAACCAT 57.659 37.500 0.00 0.00 42.13 3.55
3970 8022 5.789574 ACCTATTGGGAATTACTCAACCA 57.210 39.130 0.00 0.00 42.13 3.67
3971 8023 7.476540 AAAACCTATTGGGAATTACTCAACC 57.523 36.000 0.00 0.00 42.13 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.