Multiple sequence alignment - TraesCS5B01G242000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G242000 chr5B 100.000 3082 0 0 1 3082 421667345 421670426 0.000000e+00 5692.0
1 TraesCS5B01G242000 chr5D 93.100 1058 35 14 1012 2054 356900941 356901975 0.000000e+00 1515.0
2 TraesCS5B01G242000 chr5D 92.704 932 31 11 118 1012 356899981 356900912 0.000000e+00 1310.0
3 TraesCS5B01G242000 chr5D 90.295 237 14 1 2398 2625 356901996 356902232 4.990000e-78 302.0
4 TraesCS5B01G242000 chr5D 87.500 104 12 1 2690 2792 356902246 356902349 5.400000e-23 119.0
5 TraesCS5B01G242000 chr5A 93.764 914 37 10 113 1012 458212558 458213465 0.000000e+00 1354.0
6 TraesCS5B01G242000 chr5A 93.079 708 29 8 1347 2054 458213876 458214563 0.000000e+00 1018.0
7 TraesCS5B01G242000 chr5A 94.489 617 23 2 203 811 455999883 455999270 0.000000e+00 941.0
8 TraesCS5B01G242000 chr5A 90.291 309 9 5 1012 1313 458213494 458213788 4.820000e-103 385.0
9 TraesCS5B01G242000 chr5A 88.163 245 18 2 2392 2625 458214583 458214827 6.510000e-72 281.0
10 TraesCS5B01G242000 chr5A 91.000 200 13 3 7 204 456015052 456014856 6.550000e-67 265.0
11 TraesCS5B01G242000 chr5A 79.193 322 50 13 2690 3004 458214841 458215152 1.120000e-49 207.0
12 TraesCS5B01G242000 chr5A 88.136 59 6 1 2630 2687 551238390 551238332 5.510000e-08 69.4
13 TraesCS5B01G242000 chr3D 86.262 313 40 2 1593 1905 277066713 277067022 1.370000e-88 337.0
14 TraesCS5B01G242000 chr3D 96.629 89 3 0 1361 1449 277066526 277066614 6.890000e-32 148.0
15 TraesCS5B01G242000 chr3D 90.741 54 5 0 2632 2685 526467421 526467474 4.260000e-09 73.1
16 TraesCS5B01G242000 chr3A 86.288 299 38 2 1599 1897 362591279 362590984 3.830000e-84 322.0
17 TraesCS5B01G242000 chr3A 94.737 95 3 1 1361 1453 362591472 362591378 2.480000e-31 147.0
18 TraesCS5B01G242000 chr3A 89.474 76 7 1 3 78 445270321 445270247 9.100000e-16 95.3
19 TraesCS5B01G242000 chr3B 87.500 280 31 3 1626 1905 373285444 373285169 1.380000e-83 320.0
20 TraesCS5B01G242000 chr3B 94.737 95 5 0 1361 1455 373285664 373285570 6.890000e-32 148.0
21 TraesCS5B01G242000 chr3B 89.109 101 9 2 4 102 246104761 246104661 1.160000e-24 124.0
22 TraesCS5B01G242000 chr3B 92.727 55 4 0 2631 2685 695788972 695789026 2.550000e-11 80.5
23 TraesCS5B01G242000 chr2B 84.641 306 44 2 1592 1897 432133603 432133301 4.990000e-78 302.0
24 TraesCS5B01G242000 chr2B 92.708 96 7 0 1367 1462 432133817 432133722 4.140000e-29 139.0
25 TraesCS5B01G242000 chr2D 83.987 306 46 2 1592 1897 363974676 363974374 1.080000e-74 291.0
26 TraesCS5B01G242000 chr2D 92.708 96 7 0 1367 1462 363974890 363974795 4.140000e-29 139.0
27 TraesCS5B01G242000 chr2A 83.987 306 46 2 1592 1897 489960501 489960199 1.080000e-74 291.0
28 TraesCS5B01G242000 chr2A 91.667 96 8 0 1367 1462 489960715 489960620 1.930000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G242000 chr5B 421667345 421670426 3081 False 5692.0 5692 100.00000 1 3082 1 chr5B.!!$F1 3081
1 TraesCS5B01G242000 chr5D 356899981 356902349 2368 False 811.5 1515 90.89975 118 2792 4 chr5D.!!$F1 2674
2 TraesCS5B01G242000 chr5A 455999270 455999883 613 True 941.0 941 94.48900 203 811 1 chr5A.!!$R1 608
3 TraesCS5B01G242000 chr5A 458212558 458215152 2594 False 649.0 1354 88.89800 113 3004 5 chr5A.!!$F1 2891
4 TraesCS5B01G242000 chr2B 432133301 432133817 516 True 220.5 302 88.67450 1367 1897 2 chr2B.!!$R1 530
5 TraesCS5B01G242000 chr2D 363974374 363974890 516 True 215.0 291 88.34750 1367 1897 2 chr2D.!!$R1 530
6 TraesCS5B01G242000 chr2A 489960199 489960715 516 True 212.5 291 87.82700 1367 1897 2 chr2A.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 1010 0.243907 GCACGCTGTCCTTGTCTCTA 59.756 55.0 0.0 0.0 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2672 2892 0.10741 TTTATGGGCACTGTAGGCGG 60.107 55.0 0.0 0.0 34.4 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.819105 TGGCGGTCCAATAATAGGATAG 57.181 45.455 0.00 0.00 39.99 2.08
25 26 4.422057 TGGCGGTCCAATAATAGGATAGA 58.578 43.478 0.00 0.00 39.99 1.98
26 27 5.030147 TGGCGGTCCAATAATAGGATAGAT 58.970 41.667 0.00 0.00 39.99 1.98
27 28 6.199376 TGGCGGTCCAATAATAGGATAGATA 58.801 40.000 0.00 0.00 39.99 1.98
28 29 6.844388 TGGCGGTCCAATAATAGGATAGATAT 59.156 38.462 0.00 0.00 39.99 1.63
29 30 7.347222 TGGCGGTCCAATAATAGGATAGATATT 59.653 37.037 0.00 0.00 39.99 1.28
30 31 8.211629 GGCGGTCCAATAATAGGATAGATATTT 58.788 37.037 0.00 0.00 37.52 1.40
53 54 9.788960 ATTTAGTCATCTTTTCCTATTTTTCGC 57.211 29.630 0.00 0.00 0.00 4.70
54 55 8.561738 TTAGTCATCTTTTCCTATTTTTCGCT 57.438 30.769 0.00 0.00 0.00 4.93
55 56 6.846350 AGTCATCTTTTCCTATTTTTCGCTG 58.154 36.000 0.00 0.00 0.00 5.18
56 57 6.030228 GTCATCTTTTCCTATTTTTCGCTGG 58.970 40.000 0.00 0.00 0.00 4.85
57 58 5.710099 TCATCTTTTCCTATTTTTCGCTGGT 59.290 36.000 0.00 0.00 0.00 4.00
58 59 6.208599 TCATCTTTTCCTATTTTTCGCTGGTT 59.791 34.615 0.00 0.00 0.00 3.67
59 60 5.768317 TCTTTTCCTATTTTTCGCTGGTTG 58.232 37.500 0.00 0.00 0.00 3.77
60 61 5.300792 TCTTTTCCTATTTTTCGCTGGTTGT 59.699 36.000 0.00 0.00 0.00 3.32
61 62 4.497473 TTCCTATTTTTCGCTGGTTGTG 57.503 40.909 0.00 0.00 0.00 3.33
62 63 2.817258 TCCTATTTTTCGCTGGTTGTGG 59.183 45.455 0.00 0.00 0.00 4.17
63 64 2.595386 CTATTTTTCGCTGGTTGTGGC 58.405 47.619 0.00 0.00 0.00 5.01
64 65 0.749649 ATTTTTCGCTGGTTGTGGCA 59.250 45.000 0.00 0.00 0.00 4.92
65 66 0.532573 TTTTTCGCTGGTTGTGGCAA 59.467 45.000 0.00 0.00 0.00 4.52
66 67 0.532573 TTTTCGCTGGTTGTGGCAAA 59.467 45.000 0.00 0.00 0.00 3.68
67 68 0.749649 TTTCGCTGGTTGTGGCAAAT 59.250 45.000 0.00 0.00 0.00 2.32
68 69 0.749649 TTCGCTGGTTGTGGCAAATT 59.250 45.000 0.00 0.00 0.00 1.82
69 70 0.749649 TCGCTGGTTGTGGCAAATTT 59.250 45.000 0.00 0.00 0.00 1.82
70 71 1.957177 TCGCTGGTTGTGGCAAATTTA 59.043 42.857 0.00 0.00 0.00 1.40
71 72 2.560542 TCGCTGGTTGTGGCAAATTTAT 59.439 40.909 0.00 0.00 0.00 1.40
72 73 3.006323 TCGCTGGTTGTGGCAAATTTATT 59.994 39.130 0.00 0.00 0.00 1.40
73 74 3.745458 CGCTGGTTGTGGCAAATTTATTT 59.255 39.130 0.00 0.00 0.00 1.40
74 75 4.213059 CGCTGGTTGTGGCAAATTTATTTT 59.787 37.500 0.00 0.00 0.00 1.82
75 76 5.277731 CGCTGGTTGTGGCAAATTTATTTTT 60.278 36.000 0.00 0.00 0.00 1.94
93 94 3.472283 TTTTGGAGTTGCCGTACTACA 57.528 42.857 0.00 0.00 37.20 2.74
94 95 2.736144 TTGGAGTTGCCGTACTACAG 57.264 50.000 0.00 0.00 40.01 2.74
95 96 1.624336 TGGAGTTGCCGTACTACAGT 58.376 50.000 0.00 0.00 40.66 3.55
96 97 1.965643 TGGAGTTGCCGTACTACAGTT 59.034 47.619 0.00 0.00 40.66 3.16
97 98 2.366266 TGGAGTTGCCGTACTACAGTTT 59.634 45.455 0.00 0.00 40.66 2.66
98 99 3.573538 TGGAGTTGCCGTACTACAGTTTA 59.426 43.478 0.00 0.00 40.66 2.01
99 100 4.039004 TGGAGTTGCCGTACTACAGTTTAA 59.961 41.667 0.00 0.00 40.66 1.52
100 101 4.624452 GGAGTTGCCGTACTACAGTTTAAG 59.376 45.833 0.00 0.00 0.00 1.85
101 102 5.458041 AGTTGCCGTACTACAGTTTAAGA 57.542 39.130 0.00 0.00 0.00 2.10
102 103 6.034161 AGTTGCCGTACTACAGTTTAAGAT 57.966 37.500 0.00 0.00 0.00 2.40
103 104 6.461640 AGTTGCCGTACTACAGTTTAAGATT 58.538 36.000 0.00 0.00 0.00 2.40
104 105 6.589139 AGTTGCCGTACTACAGTTTAAGATTC 59.411 38.462 0.00 0.00 0.00 2.52
105 106 5.413499 TGCCGTACTACAGTTTAAGATTCC 58.587 41.667 0.00 0.00 0.00 3.01
106 107 5.186409 TGCCGTACTACAGTTTAAGATTCCT 59.814 40.000 0.00 0.00 0.00 3.36
107 108 6.104665 GCCGTACTACAGTTTAAGATTCCTT 58.895 40.000 0.00 0.00 36.43 3.36
108 109 6.592994 GCCGTACTACAGTTTAAGATTCCTTT 59.407 38.462 0.00 0.00 33.94 3.11
109 110 7.118825 GCCGTACTACAGTTTAAGATTCCTTTT 59.881 37.037 0.00 0.00 33.94 2.27
110 111 9.643693 CCGTACTACAGTTTAAGATTCCTTTTA 57.356 33.333 0.00 0.00 33.94 1.52
171 172 1.488812 ACCTACACACTTGGCTGTTCA 59.511 47.619 0.00 0.00 0.00 3.18
175 176 1.321474 CACACTTGGCTGTTCACCAT 58.679 50.000 0.00 0.00 36.96 3.55
189 191 8.345565 GGCTGTTCACCATTTATCAAGTTATAG 58.654 37.037 0.00 0.00 0.00 1.31
190 192 7.857885 GCTGTTCACCATTTATCAAGTTATAGC 59.142 37.037 0.00 0.00 0.00 2.97
229 243 7.390440 TCATTAGTTTTTCTTCATGGATCACGT 59.610 33.333 0.00 0.00 0.00 4.49
309 325 1.699054 AAGGCAGCCGCATATGGAGA 61.699 55.000 5.55 0.00 41.24 3.71
315 331 1.342819 AGCCGCATATGGAGAAGAGAC 59.657 52.381 4.56 0.00 0.00 3.36
359 375 6.457934 CCATTCATGCATCTAGTGTTGAACTC 60.458 42.308 0.00 0.00 40.56 3.01
428 444 5.005779 CAGATGTACGAATCCACTGTAAAGC 59.994 44.000 0.00 0.00 0.00 3.51
449 465 3.679980 GCGTAAACTGAAAGCAGATCAGA 59.320 43.478 17.10 0.00 45.74 3.27
450 466 4.201666 GCGTAAACTGAAAGCAGATCAGAG 60.202 45.833 17.10 6.75 45.74 3.35
451 467 5.164233 CGTAAACTGAAAGCAGATCAGAGA 58.836 41.667 17.10 2.89 45.74 3.10
512 531 0.875059 GCAAACCCGAGAAGGAACAG 59.125 55.000 0.00 0.00 45.00 3.16
571 590 4.566759 GCGCATCAGTCAAGAACATACTAA 59.433 41.667 0.30 0.00 0.00 2.24
766 796 5.005094 TGTCTTGATTGAGTGCATGATTGA 58.995 37.500 0.00 0.00 0.00 2.57
841 877 4.017591 TCCCATCCTAGGAAAAGAAATGCA 60.018 41.667 17.30 0.00 0.00 3.96
842 878 4.098501 CCCATCCTAGGAAAAGAAATGCAC 59.901 45.833 17.30 0.00 0.00 4.57
843 879 4.201950 CCATCCTAGGAAAAGAAATGCACG 60.202 45.833 17.30 0.00 0.00 5.34
952 1010 0.243907 GCACGCTGTCCTTGTCTCTA 59.756 55.000 0.00 0.00 0.00 2.43
984 1042 4.202781 CCTGGGTATATAAATGGCCCCTTT 60.203 45.833 0.00 2.59 38.57 3.11
1067 1161 1.529948 CATGGGCGCCTTGGATCAT 60.530 57.895 28.56 17.08 0.00 2.45
1082 1176 1.478510 GATCATCTGTCCCGTCTGTGT 59.521 52.381 0.00 0.00 0.00 3.72
1088 1182 2.295349 TCTGTCCCGTCTGTGTAACTTC 59.705 50.000 0.00 0.00 38.04 3.01
1255 1349 5.434408 TCTGATCTTGTGAAGGGATCAATG 58.566 41.667 0.00 0.00 43.13 2.82
1257 1351 6.156775 TCTGATCTTGTGAAGGGATCAATGTA 59.843 38.462 0.00 0.00 43.13 2.29
1260 1354 7.835682 TGATCTTGTGAAGGGATCAATGTATTT 59.164 33.333 0.00 0.00 41.58 1.40
1261 1355 8.599624 ATCTTGTGAAGGGATCAATGTATTTT 57.400 30.769 0.00 0.00 40.50 1.82
1262 1356 8.421249 TCTTGTGAAGGGATCAATGTATTTTT 57.579 30.769 0.00 0.00 40.50 1.94
1329 1506 4.699637 ACGTGTGATTAACTGGAGTTTCA 58.300 39.130 0.00 0.00 39.31 2.69
1331 1508 5.763204 ACGTGTGATTAACTGGAGTTTCATT 59.237 36.000 0.00 0.00 39.31 2.57
1334 1511 8.286800 CGTGTGATTAACTGGAGTTTCATTTAA 58.713 33.333 0.00 0.00 39.31 1.52
1401 1582 3.584406 TCAAGGTGAAGATGGACTGTGAT 59.416 43.478 0.00 0.00 0.00 3.06
1477 1658 5.106515 ACACATACTGACCGATATCGATCTG 60.107 44.000 26.32 23.47 43.02 2.90
1501 1692 3.596214 ACGTCAAACCAAGCGATCTAAT 58.404 40.909 0.00 0.00 0.00 1.73
1604 1806 5.629125 TCATATGCATATGCCAAAGGTGTA 58.371 37.500 32.95 15.15 39.90 2.90
1608 1810 2.680841 GCATATGCCAAAGGTGTAACGA 59.319 45.455 17.26 0.00 33.65 3.85
1691 1893 2.650116 GCTGGCGAGGGTGAAGAGA 61.650 63.158 0.00 0.00 0.00 3.10
1905 2107 4.298332 CACCGTCATGTGATTCGATCATA 58.702 43.478 0.00 0.00 42.04 2.15
1927 2129 3.917988 TCATATTAGCATCTGCACTCCG 58.082 45.455 4.79 0.00 45.16 4.63
1932 2134 2.191375 CATCTGCACTCCGGCCAT 59.809 61.111 2.24 0.00 0.00 4.40
1933 2135 1.890979 CATCTGCACTCCGGCCATC 60.891 63.158 2.24 0.00 0.00 3.51
1934 2136 2.068821 ATCTGCACTCCGGCCATCT 61.069 57.895 2.24 0.00 0.00 2.90
1935 2137 2.321263 ATCTGCACTCCGGCCATCTG 62.321 60.000 2.24 0.00 0.00 2.90
1936 2138 4.783621 TGCACTCCGGCCATCTGC 62.784 66.667 2.24 3.98 40.16 4.26
1937 2139 4.783621 GCACTCCGGCCATCTGCA 62.784 66.667 2.24 0.00 43.89 4.41
1938 2140 2.821366 CACTCCGGCCATCTGCAC 60.821 66.667 2.24 0.00 43.89 4.57
1939 2141 4.101448 ACTCCGGCCATCTGCACC 62.101 66.667 2.24 0.00 43.89 5.01
1940 2142 4.864334 CTCCGGCCATCTGCACCC 62.864 72.222 2.24 0.00 43.89 4.61
1945 2147 4.746309 GCCATCTGCACCCAGCCA 62.746 66.667 0.00 0.00 44.83 4.75
1966 2168 1.268589 CGACGACATGCCGAGATTACT 60.269 52.381 8.88 0.00 0.00 2.24
1967 2169 2.032290 CGACGACATGCCGAGATTACTA 60.032 50.000 8.88 0.00 0.00 1.82
1968 2170 3.298317 GACGACATGCCGAGATTACTAC 58.702 50.000 8.88 0.00 0.00 2.73
1969 2171 2.950309 ACGACATGCCGAGATTACTACT 59.050 45.455 8.88 0.00 0.00 2.57
1970 2172 3.243101 ACGACATGCCGAGATTACTACTG 60.243 47.826 8.88 0.00 0.00 2.74
2024 2226 6.709846 GGGAAGAATGATACCAAGAAGATGAG 59.290 42.308 0.00 0.00 0.00 2.90
2054 2258 4.584327 TGTACGGTACTGATGGATGATG 57.416 45.455 18.32 0.00 0.00 3.07
2057 2267 4.585955 ACGGTACTGATGGATGATGTAC 57.414 45.455 9.17 0.00 34.48 2.90
2058 2268 4.215908 ACGGTACTGATGGATGATGTACT 58.784 43.478 9.17 0.00 35.29 2.73
2060 2270 4.321304 CGGTACTGATGGATGATGTACTCC 60.321 50.000 0.00 0.00 35.29 3.85
2061 2271 4.588951 GGTACTGATGGATGATGTACTCCA 59.411 45.833 4.21 4.21 45.27 3.86
2062 2272 5.070446 GGTACTGATGGATGATGTACTCCAA 59.930 44.000 5.73 0.00 44.41 3.53
2063 2273 5.698741 ACTGATGGATGATGTACTCCAAA 57.301 39.130 5.73 0.00 44.41 3.28
2064 2274 6.257994 ACTGATGGATGATGTACTCCAAAT 57.742 37.500 5.73 0.00 44.41 2.32
2065 2275 6.666678 ACTGATGGATGATGTACTCCAAATT 58.333 36.000 5.73 0.00 44.41 1.82
2068 2278 8.681486 TGATGGATGATGTACTCCAAATTAAG 57.319 34.615 5.73 0.00 44.41 1.85
2069 2279 8.493607 TGATGGATGATGTACTCCAAATTAAGA 58.506 33.333 5.73 0.00 44.41 2.10
2070 2280 8.915057 ATGGATGATGTACTCCAAATTAAGAG 57.085 34.615 5.73 3.67 44.41 2.85
2071 2281 6.767902 TGGATGATGTACTCCAAATTAAGAGC 59.232 38.462 0.00 0.00 38.59 4.09
2073 2283 6.061022 TGATGTACTCCAAATTAAGAGCCA 57.939 37.500 4.89 3.39 33.18 4.75
2074 2284 6.662755 TGATGTACTCCAAATTAAGAGCCAT 58.337 36.000 4.89 7.13 33.18 4.40
2075 2285 7.801104 TGATGTACTCCAAATTAAGAGCCATA 58.199 34.615 4.89 0.00 33.18 2.74
2076 2286 8.271458 TGATGTACTCCAAATTAAGAGCCATAA 58.729 33.333 4.89 0.06 33.18 1.90
2077 2287 9.289782 GATGTACTCCAAATTAAGAGCCATAAT 57.710 33.333 4.89 0.00 33.18 1.28
2078 2288 9.646522 ATGTACTCCAAATTAAGAGCCATAATT 57.353 29.630 4.89 0.00 35.12 1.40
2079 2289 9.120538 TGTACTCCAAATTAAGAGCCATAATTC 57.879 33.333 4.89 0.00 33.09 2.17
2080 2290 7.264373 ACTCCAAATTAAGAGCCATAATTCG 57.736 36.000 4.89 0.00 33.09 3.34
2081 2291 6.263168 ACTCCAAATTAAGAGCCATAATTCGG 59.737 38.462 4.89 0.00 33.09 4.30
2082 2292 6.361433 TCCAAATTAAGAGCCATAATTCGGA 58.639 36.000 3.33 3.33 34.83 4.55
2083 2293 6.831353 TCCAAATTAAGAGCCATAATTCGGAA 59.169 34.615 4.52 0.00 34.48 4.30
2084 2294 6.918022 CCAAATTAAGAGCCATAATTCGGAAC 59.082 38.462 0.00 0.00 31.34 3.62
2097 2307 3.425422 GGAACGATGCCCATGCTC 58.575 61.111 0.00 0.00 38.71 4.26
2098 2308 1.451927 GGAACGATGCCCATGCTCA 60.452 57.895 0.00 0.00 38.71 4.26
2099 2309 0.820891 GGAACGATGCCCATGCTCAT 60.821 55.000 0.00 0.00 38.71 2.90
2100 2310 0.590195 GAACGATGCCCATGCTCATC 59.410 55.000 12.66 12.66 38.71 2.92
2101 2311 0.182061 AACGATGCCCATGCTCATCT 59.818 50.000 17.59 7.30 37.52 2.90
2102 2312 1.051008 ACGATGCCCATGCTCATCTA 58.949 50.000 17.59 0.00 37.52 1.98
2103 2313 1.270518 ACGATGCCCATGCTCATCTAC 60.271 52.381 17.59 0.71 37.52 2.59
2104 2314 1.001746 CGATGCCCATGCTCATCTACT 59.998 52.381 17.59 0.00 37.52 2.57
2105 2315 2.232208 CGATGCCCATGCTCATCTACTA 59.768 50.000 17.59 0.00 37.52 1.82
2106 2316 3.594134 GATGCCCATGCTCATCTACTAC 58.406 50.000 14.47 0.00 36.91 2.73
2107 2317 2.397597 TGCCCATGCTCATCTACTACA 58.602 47.619 0.00 0.00 38.71 2.74
2108 2318 2.103094 TGCCCATGCTCATCTACTACAC 59.897 50.000 0.00 0.00 38.71 2.90
2109 2319 2.548920 GCCCATGCTCATCTACTACACC 60.549 54.545 0.00 0.00 33.53 4.16
2110 2320 2.968574 CCCATGCTCATCTACTACACCT 59.031 50.000 0.00 0.00 0.00 4.00
2111 2321 3.244009 CCCATGCTCATCTACTACACCTG 60.244 52.174 0.00 0.00 0.00 4.00
2112 2322 3.244009 CCATGCTCATCTACTACACCTGG 60.244 52.174 0.00 0.00 0.00 4.45
2113 2323 2.388735 TGCTCATCTACTACACCTGGG 58.611 52.381 0.00 0.00 0.00 4.45
2114 2324 2.292257 TGCTCATCTACTACACCTGGGT 60.292 50.000 0.00 0.00 0.00 4.51
2128 2338 4.447138 ACCTGGGTGAACAGTCAATTAA 57.553 40.909 0.00 0.00 36.75 1.40
2129 2339 4.798882 ACCTGGGTGAACAGTCAATTAAA 58.201 39.130 0.00 0.00 36.75 1.52
2130 2340 5.205056 ACCTGGGTGAACAGTCAATTAAAA 58.795 37.500 0.00 0.00 36.75 1.52
2131 2341 5.659079 ACCTGGGTGAACAGTCAATTAAAAA 59.341 36.000 0.00 0.00 36.75 1.94
2132 2342 6.326323 ACCTGGGTGAACAGTCAATTAAAAAT 59.674 34.615 0.00 0.00 36.75 1.82
2133 2343 7.507616 ACCTGGGTGAACAGTCAATTAAAAATA 59.492 33.333 0.00 0.00 36.75 1.40
2134 2344 8.364142 CCTGGGTGAACAGTCAATTAAAAATAA 58.636 33.333 0.00 0.00 36.75 1.40
2135 2345 9.927668 CTGGGTGAACAGTCAATTAAAAATAAT 57.072 29.630 0.00 0.00 34.87 1.28
2182 2392 9.167311 TCTACTTCTTTTAGAAATCCAAGATGC 57.833 33.333 0.00 0.00 33.19 3.91
2183 2393 9.171877 CTACTTCTTTTAGAAATCCAAGATGCT 57.828 33.333 0.00 0.00 33.19 3.79
2184 2394 8.049655 ACTTCTTTTAGAAATCCAAGATGCTC 57.950 34.615 0.00 0.00 33.19 4.26
2185 2395 7.667219 ACTTCTTTTAGAAATCCAAGATGCTCA 59.333 33.333 0.00 0.00 33.19 4.26
2186 2396 8.585471 TTCTTTTAGAAATCCAAGATGCTCAT 57.415 30.769 0.00 0.00 29.99 2.90
2187 2397 7.993101 TCTTTTAGAAATCCAAGATGCTCATG 58.007 34.615 0.00 0.00 0.00 3.07
2188 2398 7.613022 TCTTTTAGAAATCCAAGATGCTCATGT 59.387 33.333 0.00 0.00 0.00 3.21
2189 2399 6.688637 TTAGAAATCCAAGATGCTCATGTG 57.311 37.500 0.00 0.00 0.00 3.21
2190 2400 3.380637 AGAAATCCAAGATGCTCATGTGC 59.619 43.478 12.78 12.78 0.00 4.57
2191 2401 1.306148 ATCCAAGATGCTCATGTGCG 58.694 50.000 14.53 0.50 35.36 5.34
2192 2402 1.063649 CCAAGATGCTCATGTGCGC 59.936 57.895 14.53 0.00 35.36 6.09
2193 2403 1.297378 CAAGATGCTCATGTGCGCG 60.297 57.895 14.53 0.00 35.36 6.86
2194 2404 2.466982 AAGATGCTCATGTGCGCGG 61.467 57.895 8.83 0.00 35.36 6.46
2195 2405 2.857575 AAGATGCTCATGTGCGCGGA 62.858 55.000 8.83 0.00 35.36 5.54
2196 2406 2.436469 ATGCTCATGTGCGCGGAA 60.436 55.556 8.83 0.00 35.36 4.30
2197 2407 1.980951 GATGCTCATGTGCGCGGAAA 61.981 55.000 8.83 0.00 35.36 3.13
2198 2408 1.585267 ATGCTCATGTGCGCGGAAAA 61.585 50.000 8.83 0.00 35.36 2.29
2199 2409 1.137404 GCTCATGTGCGCGGAAAAT 59.863 52.632 8.83 0.00 0.00 1.82
2200 2410 0.456653 GCTCATGTGCGCGGAAAATT 60.457 50.000 8.83 0.00 0.00 1.82
2201 2411 1.981254 CTCATGTGCGCGGAAAATTT 58.019 45.000 8.83 0.00 0.00 1.82
2202 2412 1.913403 CTCATGTGCGCGGAAAATTTC 59.087 47.619 8.83 0.00 0.00 2.17
2203 2413 0.634731 CATGTGCGCGGAAAATTTCG 59.365 50.000 8.83 0.00 0.00 3.46
2204 2414 0.455972 ATGTGCGCGGAAAATTTCGG 60.456 50.000 8.83 8.65 0.00 4.30
2205 2415 1.799916 GTGCGCGGAAAATTTCGGG 60.800 57.895 8.83 10.59 41.28 5.14
2206 2416 2.202557 GCGCGGAAAATTTCGGGG 60.203 61.111 20.45 20.45 42.97 5.73
2207 2417 2.985117 GCGCGGAAAATTTCGGGGT 61.985 57.895 23.55 0.00 42.38 4.95
2208 2418 1.154112 CGCGGAAAATTTCGGGGTG 60.154 57.895 17.80 5.92 37.89 4.61
2209 2419 1.858372 CGCGGAAAATTTCGGGGTGT 61.858 55.000 17.80 0.00 37.89 4.16
2210 2420 0.315886 GCGGAAAATTTCGGGGTGTT 59.684 50.000 13.80 0.00 0.00 3.32
2211 2421 1.667756 GCGGAAAATTTCGGGGTGTTC 60.668 52.381 13.80 0.00 0.00 3.18
2212 2422 1.400500 CGGAAAATTTCGGGGTGTTCG 60.400 52.381 5.51 0.00 0.00 3.95
2213 2423 1.068125 GGAAAATTTCGGGGTGTTCGG 60.068 52.381 0.00 0.00 0.00 4.30
2214 2424 1.881324 GAAAATTTCGGGGTGTTCGGA 59.119 47.619 0.00 0.00 0.00 4.55
2215 2425 1.241165 AAATTTCGGGGTGTTCGGAC 58.759 50.000 0.00 0.00 0.00 4.79
2216 2426 0.108963 AATTTCGGGGTGTTCGGACA 59.891 50.000 0.00 0.00 0.00 4.02
2217 2427 0.326927 ATTTCGGGGTGTTCGGACAT 59.673 50.000 0.00 0.00 38.23 3.06
2218 2428 0.108963 TTTCGGGGTGTTCGGACATT 59.891 50.000 0.00 0.00 38.23 2.71
2219 2429 0.108963 TTCGGGGTGTTCGGACATTT 59.891 50.000 0.00 0.00 38.23 2.32
2220 2430 0.604243 TCGGGGTGTTCGGACATTTG 60.604 55.000 0.00 0.00 38.23 2.32
2221 2431 0.604243 CGGGGTGTTCGGACATTTGA 60.604 55.000 0.00 0.00 38.23 2.69
2222 2432 1.834188 GGGGTGTTCGGACATTTGAT 58.166 50.000 0.00 0.00 38.23 2.57
2223 2433 1.472480 GGGGTGTTCGGACATTTGATG 59.528 52.381 0.00 0.00 38.23 3.07
2224 2434 2.432444 GGGTGTTCGGACATTTGATGA 58.568 47.619 0.00 0.00 38.23 2.92
2225 2435 2.420022 GGGTGTTCGGACATTTGATGAG 59.580 50.000 0.00 0.00 38.23 2.90
2226 2436 2.159517 GGTGTTCGGACATTTGATGAGC 60.160 50.000 0.00 0.00 38.23 4.26
2227 2437 1.731709 TGTTCGGACATTTGATGAGCG 59.268 47.619 0.00 0.00 0.00 5.03
2228 2438 1.999735 GTTCGGACATTTGATGAGCGA 59.000 47.619 0.00 0.00 0.00 4.93
2229 2439 2.378445 TCGGACATTTGATGAGCGAA 57.622 45.000 0.00 0.00 0.00 4.70
2230 2440 1.999735 TCGGACATTTGATGAGCGAAC 59.000 47.619 0.00 0.00 0.00 3.95
2231 2441 1.731709 CGGACATTTGATGAGCGAACA 59.268 47.619 0.00 0.00 0.00 3.18
2232 2442 2.159430 CGGACATTTGATGAGCGAACAA 59.841 45.455 0.00 0.00 0.00 2.83
2233 2443 3.364864 CGGACATTTGATGAGCGAACAAA 60.365 43.478 0.00 0.00 37.79 2.83
2234 2444 4.545610 GGACATTTGATGAGCGAACAAAA 58.454 39.130 0.00 0.00 37.14 2.44
2235 2445 4.981674 GGACATTTGATGAGCGAACAAAAA 59.018 37.500 0.00 0.00 37.14 1.94
2266 2476 8.846943 TCAGCTATGAACAGTATTCTTTTTCA 57.153 30.769 0.00 0.00 30.61 2.69
2267 2477 9.283768 TCAGCTATGAACAGTATTCTTTTTCAA 57.716 29.630 0.00 0.00 31.20 2.69
2268 2478 9.897744 CAGCTATGAACAGTATTCTTTTTCAAA 57.102 29.630 0.00 0.00 31.20 2.69
2270 2480 9.899226 GCTATGAACAGTATTCTTTTTCAAAGT 57.101 29.630 0.00 0.00 31.20 2.66
2282 2492 9.958234 ATTCTTTTTCAAAGTTTCTTAGAGAGC 57.042 29.630 0.00 0.00 0.00 4.09
2283 2493 8.738645 TCTTTTTCAAAGTTTCTTAGAGAGCT 57.261 30.769 0.00 0.00 0.00 4.09
2284 2494 9.832445 TCTTTTTCAAAGTTTCTTAGAGAGCTA 57.168 29.630 0.00 0.00 0.00 3.32
2290 2500 9.561069 TCAAAGTTTCTTAGAGAGCTAAATTGT 57.439 29.630 0.00 0.00 36.24 2.71
2296 2506 9.965824 TTTCTTAGAGAGCTAAATTGTTTTTGG 57.034 29.630 0.00 0.00 36.24 3.28
2297 2507 7.593825 TCTTAGAGAGCTAAATTGTTTTTGGC 58.406 34.615 0.00 0.00 36.24 4.52
2298 2508 5.789643 AGAGAGCTAAATTGTTTTTGGCA 57.210 34.783 8.73 0.00 0.00 4.92
2299 2509 5.532557 AGAGAGCTAAATTGTTTTTGGCAC 58.467 37.500 8.73 3.18 0.00 5.01
2300 2510 4.298332 AGAGCTAAATTGTTTTTGGCACG 58.702 39.130 8.73 0.00 0.00 5.34
2301 2511 4.037446 AGAGCTAAATTGTTTTTGGCACGA 59.963 37.500 8.73 0.00 0.00 4.35
2302 2512 4.298332 AGCTAAATTGTTTTTGGCACGAG 58.702 39.130 8.73 0.00 0.00 4.18
2303 2513 3.121025 GCTAAATTGTTTTTGGCACGAGC 60.121 43.478 0.00 0.00 41.10 5.03
2304 2514 2.888834 AATTGTTTTTGGCACGAGCT 57.111 40.000 4.48 0.00 41.70 4.09
2305 2515 2.888834 ATTGTTTTTGGCACGAGCTT 57.111 40.000 4.48 0.00 41.70 3.74
2306 2516 2.202295 TTGTTTTTGGCACGAGCTTC 57.798 45.000 4.48 0.00 41.70 3.86
2307 2517 1.388547 TGTTTTTGGCACGAGCTTCT 58.611 45.000 4.48 0.00 41.70 2.85
2308 2518 1.333619 TGTTTTTGGCACGAGCTTCTC 59.666 47.619 4.48 0.00 41.70 2.87
2309 2519 1.333619 GTTTTTGGCACGAGCTTCTCA 59.666 47.619 4.48 0.00 41.70 3.27
2310 2520 1.229428 TTTTGGCACGAGCTTCTCAG 58.771 50.000 4.48 0.00 41.70 3.35
2311 2521 0.392706 TTTGGCACGAGCTTCTCAGA 59.607 50.000 4.48 0.00 41.70 3.27
2312 2522 0.610174 TTGGCACGAGCTTCTCAGAT 59.390 50.000 4.48 0.00 41.70 2.90
2313 2523 0.108472 TGGCACGAGCTTCTCAGATG 60.108 55.000 4.48 0.00 41.70 2.90
2314 2524 0.108424 GGCACGAGCTTCTCAGATGT 60.108 55.000 4.48 0.00 41.70 3.06
2315 2525 1.674221 GGCACGAGCTTCTCAGATGTT 60.674 52.381 4.48 0.00 41.70 2.71
2316 2526 1.658095 GCACGAGCTTCTCAGATGTTC 59.342 52.381 0.00 0.00 37.91 3.18
2317 2527 2.928301 GCACGAGCTTCTCAGATGTTCA 60.928 50.000 0.00 0.00 37.91 3.18
2318 2528 3.320626 CACGAGCTTCTCAGATGTTCAA 58.679 45.455 5.44 0.00 0.00 2.69
2319 2529 3.742882 CACGAGCTTCTCAGATGTTCAAA 59.257 43.478 5.44 0.00 0.00 2.69
2320 2530 3.743396 ACGAGCTTCTCAGATGTTCAAAC 59.257 43.478 5.44 0.00 0.00 2.93
2321 2531 3.742882 CGAGCTTCTCAGATGTTCAAACA 59.257 43.478 5.44 0.00 44.06 2.83
2322 2532 4.376819 CGAGCTTCTCAGATGTTCAAACAC 60.377 45.833 5.44 0.00 42.51 3.32
2323 2533 3.817647 AGCTTCTCAGATGTTCAAACACC 59.182 43.478 0.00 0.00 42.51 4.16
2324 2534 3.565482 GCTTCTCAGATGTTCAAACACCA 59.435 43.478 0.00 0.00 42.51 4.17
2325 2535 4.217118 GCTTCTCAGATGTTCAAACACCAT 59.783 41.667 0.00 0.00 42.51 3.55
2326 2536 5.412594 GCTTCTCAGATGTTCAAACACCATA 59.587 40.000 0.00 0.00 42.51 2.74
2327 2537 6.072508 GCTTCTCAGATGTTCAAACACCATAA 60.073 38.462 0.00 0.00 42.51 1.90
2328 2538 7.522073 GCTTCTCAGATGTTCAAACACCATAAA 60.522 37.037 0.00 0.00 42.51 1.40
2329 2539 7.815840 TCTCAGATGTTCAAACACCATAAAA 57.184 32.000 0.00 0.00 42.51 1.52
2330 2540 8.408043 TCTCAGATGTTCAAACACCATAAAAT 57.592 30.769 0.00 0.00 42.51 1.82
2331 2541 9.513906 TCTCAGATGTTCAAACACCATAAAATA 57.486 29.630 0.00 0.00 42.51 1.40
2335 2545 9.369904 AGATGTTCAAACACCATAAAATATTGC 57.630 29.630 0.00 0.00 42.51 3.56
2336 2546 9.149225 GATGTTCAAACACCATAAAATATTGCA 57.851 29.630 0.00 0.00 42.51 4.08
2337 2547 9.669887 ATGTTCAAACACCATAAAATATTGCAT 57.330 25.926 0.00 0.00 42.51 3.96
2338 2548 8.933807 TGTTCAAACACCATAAAATATTGCATG 58.066 29.630 0.00 0.00 33.17 4.06
2339 2549 7.536895 TCAAACACCATAAAATATTGCATGC 57.463 32.000 11.82 11.82 0.00 4.06
2340 2550 7.101700 TCAAACACCATAAAATATTGCATGCA 58.898 30.769 18.46 18.46 0.00 3.96
2341 2551 7.769507 TCAAACACCATAAAATATTGCATGCAT 59.230 29.630 23.37 14.00 0.00 3.96
2342 2552 7.485418 AACACCATAAAATATTGCATGCATG 57.515 32.000 23.37 22.70 0.00 4.06
2343 2553 6.818233 ACACCATAAAATATTGCATGCATGA 58.182 32.000 30.64 13.01 0.00 3.07
2344 2554 6.926826 ACACCATAAAATATTGCATGCATGAG 59.073 34.615 30.64 11.84 0.00 2.90
2345 2555 5.929992 ACCATAAAATATTGCATGCATGAGC 59.070 36.000 30.64 16.34 42.57 4.26
2356 2566 3.867723 GCATGAGCATCTTGGATGC 57.132 52.632 20.66 20.66 44.85 3.91
2357 2567 0.314302 GCATGAGCATCTTGGATGCC 59.686 55.000 23.37 16.82 45.59 4.40
2358 2568 1.982660 CATGAGCATCTTGGATGCCT 58.017 50.000 23.37 13.80 45.59 4.75
2359 2569 2.812983 GCATGAGCATCTTGGATGCCTA 60.813 50.000 23.37 15.46 45.59 3.93
2360 2570 3.483421 CATGAGCATCTTGGATGCCTAA 58.517 45.455 23.37 13.00 45.59 2.69
2361 2571 3.650281 TGAGCATCTTGGATGCCTAAA 57.350 42.857 23.37 8.69 45.59 1.85
2362 2572 4.174704 TGAGCATCTTGGATGCCTAAAT 57.825 40.909 23.37 9.24 45.59 1.40
2363 2573 4.539726 TGAGCATCTTGGATGCCTAAATT 58.460 39.130 23.37 8.63 45.59 1.82
2364 2574 4.957954 TGAGCATCTTGGATGCCTAAATTT 59.042 37.500 23.37 8.02 45.59 1.82
2365 2575 5.422970 TGAGCATCTTGGATGCCTAAATTTT 59.577 36.000 23.37 7.40 45.59 1.82
2366 2576 6.070653 TGAGCATCTTGGATGCCTAAATTTTT 60.071 34.615 23.37 6.80 45.59 1.94
2367 2577 7.123997 TGAGCATCTTGGATGCCTAAATTTTTA 59.876 33.333 23.37 2.78 45.59 1.52
2368 2578 7.495055 AGCATCTTGGATGCCTAAATTTTTAG 58.505 34.615 23.37 3.55 45.59 1.85
2369 2579 7.342799 AGCATCTTGGATGCCTAAATTTTTAGA 59.657 33.333 23.37 0.00 45.59 2.10
2370 2580 8.146412 GCATCTTGGATGCCTAAATTTTTAGAT 58.854 33.333 18.37 0.00 39.95 1.98
2443 2653 7.256286 AGCCTGAGTTACAACTTTATAGTACG 58.744 38.462 0.00 0.00 39.88 3.67
2482 2692 8.319146 TCGATATATACATACCTGTCAGTCTCA 58.681 37.037 0.00 0.00 36.79 3.27
2494 2704 3.389329 TGTCAGTCTCAAGCCTTCTCTTT 59.611 43.478 0.00 0.00 0.00 2.52
2503 2713 4.348168 TCAAGCCTTCTCTTTTGTCCTACT 59.652 41.667 0.00 0.00 0.00 2.57
2506 2716 3.753797 GCCTTCTCTTTTGTCCTACTTGG 59.246 47.826 0.00 0.00 37.10 3.61
2531 2751 7.542130 GGTCATCGTTATCTTTCTTTTTGCAAT 59.458 33.333 0.00 0.00 0.00 3.56
2625 2845 0.767375 ACAGTTCTGACCATGCACCT 59.233 50.000 6.83 0.00 0.00 4.00
2626 2846 1.162698 CAGTTCTGACCATGCACCTG 58.837 55.000 0.00 0.00 0.00 4.00
2629 2849 2.158623 AGTTCTGACCATGCACCTGAAA 60.159 45.455 0.00 0.00 0.00 2.69
2631 2851 0.524862 CTGACCATGCACCTGAAAGC 59.475 55.000 0.00 0.00 0.00 3.51
2633 2853 0.524862 GACCATGCACCTGAAAGCAG 59.475 55.000 0.00 0.00 44.94 4.24
2641 2861 3.993535 CTGAAAGCAGGGGCAGAC 58.006 61.111 0.00 0.00 44.61 3.51
2642 2862 1.676967 CTGAAAGCAGGGGCAGACC 60.677 63.158 0.00 0.00 44.61 3.85
2681 2901 3.930012 GCCCTAGGCCGCCTACAG 61.930 72.222 15.59 8.62 44.06 2.74
2682 2902 2.444140 CCCTAGGCCGCCTACAGT 60.444 66.667 15.59 0.00 34.61 3.55
2683 2903 2.797278 CCCTAGGCCGCCTACAGTG 61.797 68.421 15.59 5.77 34.61 3.66
2684 2904 2.107141 CTAGGCCGCCTACAGTGC 59.893 66.667 15.59 0.00 34.61 4.40
2685 2905 3.447025 CTAGGCCGCCTACAGTGCC 62.447 68.421 15.59 0.00 44.35 5.01
2688 2908 4.489771 GCCGCCTACAGTGCCCAT 62.490 66.667 0.00 0.00 0.00 4.00
2700 2920 4.022603 ACAGTGCCCATAAAACATATGCA 58.977 39.130 1.58 0.00 0.00 3.96
2738 2959 8.613482 GGTGAATCTAAGCTTATAAAGTGGAAC 58.387 37.037 6.64 0.00 0.00 3.62
2763 2984 9.439500 ACAAATTTATTTTCTGATGGAATGTGG 57.561 29.630 0.00 0.00 33.53 4.17
2777 2998 4.957954 TGGAATGTGGTAGGTAGTAATCGT 59.042 41.667 0.00 0.00 0.00 3.73
2782 3003 6.199937 TGTGGTAGGTAGTAATCGTTCTTC 57.800 41.667 0.00 0.00 0.00 2.87
2788 3009 4.645588 AGGTAGTAATCGTTCTTCTCCCAG 59.354 45.833 0.00 0.00 0.00 4.45
2799 3020 3.878160 CTTCTCCCAGAAGTAGTGACC 57.122 52.381 5.27 0.00 45.03 4.02
2800 3021 3.436243 CTTCTCCCAGAAGTAGTGACCT 58.564 50.000 5.27 0.00 45.03 3.85
2801 3022 4.601084 CTTCTCCCAGAAGTAGTGACCTA 58.399 47.826 5.27 0.00 45.03 3.08
2803 3024 5.006896 TCTCCCAGAAGTAGTGACCTAAA 57.993 43.478 0.00 0.00 0.00 1.85
2804 3025 5.590818 TCTCCCAGAAGTAGTGACCTAAAT 58.409 41.667 0.00 0.00 0.00 1.40
2808 3029 5.112686 CCAGAAGTAGTGACCTAAATGCTC 58.887 45.833 0.00 0.00 0.00 4.26
2809 3030 5.105146 CCAGAAGTAGTGACCTAAATGCTCT 60.105 44.000 0.00 0.00 0.00 4.09
2810 3031 6.402222 CAGAAGTAGTGACCTAAATGCTCTT 58.598 40.000 0.00 0.00 0.00 2.85
2811 3032 7.363880 CCAGAAGTAGTGACCTAAATGCTCTTA 60.364 40.741 0.00 0.00 0.00 2.10
2887 3108 2.799126 TTATCATCGGGTGCAAAGGT 57.201 45.000 0.00 0.00 0.00 3.50
2898 3119 3.365472 GGTGCAAAGGTCAGGGATAAAT 58.635 45.455 0.00 0.00 0.00 1.40
2902 3123 3.885901 GCAAAGGTCAGGGATAAATCCTC 59.114 47.826 8.85 0.00 46.35 3.71
2907 3128 4.796265 AGGTCAGGGATAAATCCTCCTTTT 59.204 41.667 8.85 0.00 46.35 2.27
2908 3129 5.103898 AGGTCAGGGATAAATCCTCCTTTTC 60.104 44.000 8.85 0.00 46.35 2.29
2910 3131 6.101296 GGTCAGGGATAAATCCTCCTTTTCTA 59.899 42.308 8.85 0.00 46.35 2.10
2911 3132 7.366551 GGTCAGGGATAAATCCTCCTTTTCTAA 60.367 40.741 8.85 0.00 46.35 2.10
2912 3133 8.053355 GTCAGGGATAAATCCTCCTTTTCTAAA 58.947 37.037 8.85 0.00 46.35 1.85
2956 3180 8.571461 AATCAATATGGCTATGTGTATCCTTG 57.429 34.615 0.00 0.00 0.00 3.61
2957 3181 6.475504 TCAATATGGCTATGTGTATCCTTGG 58.524 40.000 0.00 0.00 0.00 3.61
2993 3217 5.301551 TGTGTATTGTCTGATGCAAAGGTTT 59.698 36.000 0.00 0.00 0.00 3.27
3018 3242 6.964807 GGTAAACCCTCCTTTTCAAAGTAA 57.035 37.500 0.00 0.00 34.20 2.24
3019 3243 7.534723 GGTAAACCCTCCTTTTCAAAGTAAT 57.465 36.000 0.00 0.00 34.20 1.89
3020 3244 8.640063 GGTAAACCCTCCTTTTCAAAGTAATA 57.360 34.615 0.00 0.00 34.20 0.98
3021 3245 8.737175 GGTAAACCCTCCTTTTCAAAGTAATAG 58.263 37.037 0.00 0.00 34.20 1.73
3022 3246 9.293404 GTAAACCCTCCTTTTCAAAGTAATAGT 57.707 33.333 0.00 0.00 34.20 2.12
3023 3247 8.777578 AAACCCTCCTTTTCAAAGTAATAGTT 57.222 30.769 0.00 0.00 34.20 2.24
3024 3248 7.997773 ACCCTCCTTTTCAAAGTAATAGTTC 57.002 36.000 0.00 0.00 34.20 3.01
3025 3249 7.756614 ACCCTCCTTTTCAAAGTAATAGTTCT 58.243 34.615 0.00 0.00 34.20 3.01
3026 3250 7.665974 ACCCTCCTTTTCAAAGTAATAGTTCTG 59.334 37.037 0.00 0.00 34.20 3.02
3027 3251 7.121315 CCCTCCTTTTCAAAGTAATAGTTCTGG 59.879 40.741 0.00 0.00 34.20 3.86
3028 3252 7.665974 CCTCCTTTTCAAAGTAATAGTTCTGGT 59.334 37.037 0.00 0.00 34.20 4.00
3029 3253 8.391075 TCCTTTTCAAAGTAATAGTTCTGGTG 57.609 34.615 0.00 0.00 34.20 4.17
3030 3254 7.040686 TCCTTTTCAAAGTAATAGTTCTGGTGC 60.041 37.037 0.00 0.00 34.20 5.01
3031 3255 7.255451 CCTTTTCAAAGTAATAGTTCTGGTGCA 60.255 37.037 0.00 0.00 34.20 4.57
3032 3256 7.759489 TTTCAAAGTAATAGTTCTGGTGCAT 57.241 32.000 0.00 0.00 0.00 3.96
3033 3257 7.759489 TTCAAAGTAATAGTTCTGGTGCATT 57.241 32.000 0.00 0.00 0.00 3.56
3034 3258 7.144722 TCAAAGTAATAGTTCTGGTGCATTG 57.855 36.000 0.00 0.00 0.00 2.82
3035 3259 6.714810 TCAAAGTAATAGTTCTGGTGCATTGT 59.285 34.615 0.00 0.00 0.00 2.71
3036 3260 6.743575 AAGTAATAGTTCTGGTGCATTGTC 57.256 37.500 0.00 0.00 0.00 3.18
3037 3261 5.804639 AGTAATAGTTCTGGTGCATTGTCA 58.195 37.500 0.00 0.00 0.00 3.58
3038 3262 6.418101 AGTAATAGTTCTGGTGCATTGTCAT 58.582 36.000 0.00 0.00 0.00 3.06
3039 3263 5.571784 AATAGTTCTGGTGCATTGTCATG 57.428 39.130 0.00 0.00 0.00 3.07
3040 3264 2.165167 AGTTCTGGTGCATTGTCATGG 58.835 47.619 0.00 0.00 0.00 3.66
3041 3265 2.161855 GTTCTGGTGCATTGTCATGGA 58.838 47.619 0.00 0.00 0.00 3.41
3042 3266 2.557924 GTTCTGGTGCATTGTCATGGAA 59.442 45.455 0.00 0.00 31.56 3.53
3043 3267 2.161855 TCTGGTGCATTGTCATGGAAC 58.838 47.619 0.00 0.00 38.91 3.62
3044 3268 1.887854 CTGGTGCATTGTCATGGAACA 59.112 47.619 0.00 0.00 45.57 3.18
3045 3269 2.296752 CTGGTGCATTGTCATGGAACAA 59.703 45.455 2.76 2.76 46.82 2.83
3046 3270 2.898612 TGGTGCATTGTCATGGAACAAT 59.101 40.909 6.89 6.89 44.84 2.71
3057 3281 9.241919 ATTGTCATGGAACAATGAACTTATACA 57.758 29.630 10.97 0.00 45.68 2.29
3062 3286 7.667043 TGGAACAATGAACTTATACACAGAC 57.333 36.000 0.00 0.00 31.92 3.51
3063 3287 7.220740 TGGAACAATGAACTTATACACAGACA 58.779 34.615 0.00 0.00 31.92 3.41
3064 3288 7.882791 TGGAACAATGAACTTATACACAGACAT 59.117 33.333 0.00 0.00 31.92 3.06
3065 3289 8.730680 GGAACAATGAACTTATACACAGACATT 58.269 33.333 0.00 0.00 0.00 2.71
3066 3290 9.546909 GAACAATGAACTTATACACAGACATTG 57.453 33.333 0.00 0.00 40.65 2.82
3067 3291 8.846943 ACAATGAACTTATACACAGACATTGA 57.153 30.769 18.67 0.00 39.23 2.57
3068 3292 9.453572 ACAATGAACTTATACACAGACATTGAT 57.546 29.630 18.67 5.27 39.23 2.57
3069 3293 9.926751 CAATGAACTTATACACAGACATTGATC 57.073 33.333 0.00 0.00 39.23 2.92
3070 3294 9.671279 AATGAACTTATACACAGACATTGATCA 57.329 29.630 0.00 0.00 0.00 2.92
3071 3295 9.671279 ATGAACTTATACACAGACATTGATCAA 57.329 29.630 11.26 11.26 0.00 2.57
3072 3296 9.500785 TGAACTTATACACAGACATTGATCAAA 57.499 29.630 13.09 0.00 0.00 2.69
3073 3297 9.760660 GAACTTATACACAGACATTGATCAAAC 57.239 33.333 13.09 7.32 0.00 2.93
3074 3298 7.963981 ACTTATACACAGACATTGATCAAACG 58.036 34.615 13.09 9.35 0.00 3.60
3075 3299 7.602644 ACTTATACACAGACATTGATCAAACGT 59.397 33.333 13.09 12.65 0.00 3.99
3076 3300 6.801539 ATACACAGACATTGATCAAACGTT 57.198 33.333 13.09 0.00 0.00 3.99
3077 3301 7.899178 ATACACAGACATTGATCAAACGTTA 57.101 32.000 13.09 2.79 0.00 3.18
3078 3302 6.801539 ACACAGACATTGATCAAACGTTAT 57.198 33.333 13.09 3.68 0.00 1.89
3079 3303 7.202016 ACACAGACATTGATCAAACGTTATT 57.798 32.000 13.09 1.15 0.00 1.40
3080 3304 7.077605 ACACAGACATTGATCAAACGTTATTG 58.922 34.615 13.09 13.49 0.00 1.90
3081 3305 7.077605 CACAGACATTGATCAAACGTTATTGT 58.922 34.615 13.09 10.17 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.304761 TCCTATTATTGGACCGCCATCC 59.695 50.000 0.00 0.00 45.46 3.51
1 2 3.695830 TCCTATTATTGGACCGCCATC 57.304 47.619 0.00 0.00 45.46 3.51
2 3 5.030147 TCTATCCTATTATTGGACCGCCAT 58.970 41.667 0.00 0.00 45.46 4.40
3 4 4.422057 TCTATCCTATTATTGGACCGCCA 58.578 43.478 0.00 0.00 44.17 5.69
4 5 5.615925 ATCTATCCTATTATTGGACCGCC 57.384 43.478 0.00 0.00 36.30 6.13
27 28 9.788960 GCGAAAAATAGGAAAAGATGACTAAAT 57.211 29.630 0.00 0.00 0.00 1.40
28 29 9.010029 AGCGAAAAATAGGAAAAGATGACTAAA 57.990 29.630 0.00 0.00 0.00 1.85
29 30 8.450964 CAGCGAAAAATAGGAAAAGATGACTAA 58.549 33.333 0.00 0.00 0.00 2.24
30 31 7.065803 CCAGCGAAAAATAGGAAAAGATGACTA 59.934 37.037 0.00 0.00 0.00 2.59
31 32 6.127897 CCAGCGAAAAATAGGAAAAGATGACT 60.128 38.462 0.00 0.00 0.00 3.41
32 33 6.030228 CCAGCGAAAAATAGGAAAAGATGAC 58.970 40.000 0.00 0.00 0.00 3.06
33 34 5.710099 ACCAGCGAAAAATAGGAAAAGATGA 59.290 36.000 0.00 0.00 0.00 2.92
34 35 5.954335 ACCAGCGAAAAATAGGAAAAGATG 58.046 37.500 0.00 0.00 0.00 2.90
35 36 6.015434 ACAACCAGCGAAAAATAGGAAAAGAT 60.015 34.615 0.00 0.00 0.00 2.40
36 37 5.300792 ACAACCAGCGAAAAATAGGAAAAGA 59.699 36.000 0.00 0.00 0.00 2.52
37 38 5.402270 CACAACCAGCGAAAAATAGGAAAAG 59.598 40.000 0.00 0.00 0.00 2.27
38 39 5.285651 CACAACCAGCGAAAAATAGGAAAA 58.714 37.500 0.00 0.00 0.00 2.29
39 40 4.261825 CCACAACCAGCGAAAAATAGGAAA 60.262 41.667 0.00 0.00 0.00 3.13
40 41 3.254657 CCACAACCAGCGAAAAATAGGAA 59.745 43.478 0.00 0.00 0.00 3.36
41 42 2.817258 CCACAACCAGCGAAAAATAGGA 59.183 45.455 0.00 0.00 0.00 2.94
42 43 2.671070 GCCACAACCAGCGAAAAATAGG 60.671 50.000 0.00 0.00 0.00 2.57
43 44 2.030363 TGCCACAACCAGCGAAAAATAG 60.030 45.455 0.00 0.00 0.00 1.73
44 45 1.957177 TGCCACAACCAGCGAAAAATA 59.043 42.857 0.00 0.00 0.00 1.40
45 46 0.749649 TGCCACAACCAGCGAAAAAT 59.250 45.000 0.00 0.00 0.00 1.82
46 47 0.532573 TTGCCACAACCAGCGAAAAA 59.467 45.000 0.00 0.00 0.00 1.94
47 48 0.532573 TTTGCCACAACCAGCGAAAA 59.467 45.000 0.00 0.00 29.40 2.29
48 49 0.749649 ATTTGCCACAACCAGCGAAA 59.250 45.000 0.00 0.00 36.03 3.46
49 50 0.749649 AATTTGCCACAACCAGCGAA 59.250 45.000 0.00 0.00 36.82 4.70
50 51 0.749649 AAATTTGCCACAACCAGCGA 59.250 45.000 0.00 0.00 0.00 4.93
51 52 2.430546 TAAATTTGCCACAACCAGCG 57.569 45.000 0.00 0.00 0.00 5.18
52 53 5.687770 AAAATAAATTTGCCACAACCAGC 57.312 34.783 0.00 0.00 0.00 4.85
72 73 3.806380 TGTAGTACGGCAACTCCAAAAA 58.194 40.909 0.00 0.00 34.01 1.94
73 74 3.181463 ACTGTAGTACGGCAACTCCAAAA 60.181 43.478 9.13 0.00 34.01 2.44
74 75 2.366266 ACTGTAGTACGGCAACTCCAAA 59.634 45.455 9.13 0.00 34.01 3.28
75 76 1.965643 ACTGTAGTACGGCAACTCCAA 59.034 47.619 9.13 0.00 34.01 3.53
76 77 1.624336 ACTGTAGTACGGCAACTCCA 58.376 50.000 9.13 0.00 34.01 3.86
77 78 2.738013 AACTGTAGTACGGCAACTCC 57.262 50.000 9.13 0.00 0.00 3.85
78 79 5.464168 TCTTAAACTGTAGTACGGCAACTC 58.536 41.667 9.13 0.00 0.00 3.01
79 80 5.458041 TCTTAAACTGTAGTACGGCAACT 57.542 39.130 9.13 0.00 0.00 3.16
80 81 6.183360 GGAATCTTAAACTGTAGTACGGCAAC 60.183 42.308 9.13 0.00 0.00 4.17
81 82 5.870978 GGAATCTTAAACTGTAGTACGGCAA 59.129 40.000 9.13 0.86 0.00 4.52
82 83 5.186409 AGGAATCTTAAACTGTAGTACGGCA 59.814 40.000 9.13 0.00 0.00 5.69
83 84 5.658468 AGGAATCTTAAACTGTAGTACGGC 58.342 41.667 9.13 0.00 0.00 5.68
84 85 8.543862 AAAAGGAATCTTAAACTGTAGTACGG 57.456 34.615 7.62 7.62 32.01 4.02
171 172 7.653713 CGACTGAGCTATAACTTGATAAATGGT 59.346 37.037 0.00 0.00 0.00 3.55
175 176 7.382488 GCATCGACTGAGCTATAACTTGATAAA 59.618 37.037 0.00 0.00 0.00 1.40
189 191 3.452474 ACTAATGAAGCATCGACTGAGC 58.548 45.455 0.00 0.00 0.00 4.26
190 192 6.414408 AAAACTAATGAAGCATCGACTGAG 57.586 37.500 0.00 0.00 0.00 3.35
229 243 5.645067 GTCACTGATGATCTGTTCCATGAAA 59.355 40.000 1.96 0.00 37.14 2.69
309 325 4.494350 GTGCATGTCACAAATGTCTCTT 57.506 40.909 13.27 0.00 44.98 2.85
332 348 3.572632 ACACTAGATGCATGAATGGCT 57.427 42.857 2.46 0.00 0.00 4.75
359 375 0.108804 TACCTTCGCTGCTCCTTTCG 60.109 55.000 0.00 0.00 0.00 3.46
388 404 7.033791 CGTACATCTGTCCCGCTTTATATTAT 58.966 38.462 0.00 0.00 0.00 1.28
399 415 1.407618 TGGATTCGTACATCTGTCCCG 59.592 52.381 0.00 0.00 0.00 5.14
428 444 5.164233 TCTCTGATCTGCTTTCAGTTTACG 58.836 41.667 9.79 0.00 41.13 3.18
449 465 3.117888 TCTTTGCAAGGTTCTCCACTTCT 60.118 43.478 8.56 0.00 35.89 2.85
450 466 3.214328 TCTTTGCAAGGTTCTCCACTTC 58.786 45.455 8.56 0.00 35.89 3.01
451 467 3.217626 CTCTTTGCAAGGTTCTCCACTT 58.782 45.455 8.56 0.00 35.89 3.16
512 531 5.498700 CGTTACAGTACGATGTTGATTGCTC 60.499 44.000 0.00 0.00 43.99 4.26
841 877 1.724582 GAAGTGTGTTGGGCAAGCGT 61.725 55.000 0.00 0.00 0.00 5.07
842 878 1.008538 GAAGTGTGTTGGGCAAGCG 60.009 57.895 0.00 0.00 0.00 4.68
843 879 0.675633 ATGAAGTGTGTTGGGCAAGC 59.324 50.000 0.00 0.00 0.00 4.01
952 1010 7.890655 GCCATTTATATACCCAGGAGAAAGAAT 59.109 37.037 0.00 0.00 0.00 2.40
973 1031 1.758122 GGCGATGAAAGGGGCCATT 60.758 57.895 4.39 0.00 44.91 3.16
984 1042 3.362706 AGTACAGAACCTTAGGCGATGA 58.637 45.455 0.00 0.00 0.00 2.92
1067 1161 1.991121 AGTTACACAGACGGGACAGA 58.009 50.000 0.00 0.00 0.00 3.41
1082 1176 5.001232 GCTTCCCTTGTATGTGTGAAGTTA 58.999 41.667 0.00 0.00 33.49 2.24
1088 1182 2.198827 TGGCTTCCCTTGTATGTGTG 57.801 50.000 0.00 0.00 0.00 3.82
1365 1546 1.416401 ACCTTGATGTTCACCGTCTGT 59.584 47.619 0.00 0.00 0.00 3.41
1401 1582 4.704103 ACCCTCCTCTCGCAGCCA 62.704 66.667 0.00 0.00 0.00 4.75
1477 1658 2.223377 AGATCGCTTGGTTTGACGTTTC 59.777 45.455 0.00 0.00 0.00 2.78
1567 1759 6.691754 ATGCATATGAACGTTCACCAAATA 57.308 33.333 31.87 20.07 40.49 1.40
1604 1806 0.601841 GATTCACCACCACCGTCGTT 60.602 55.000 0.00 0.00 0.00 3.85
1608 1810 2.358247 GCGATTCACCACCACCGT 60.358 61.111 0.00 0.00 0.00 4.83
1633 1835 2.420043 CCGTCACCGTCACCTTGT 59.580 61.111 0.00 0.00 0.00 3.16
1691 1893 2.342648 GCCGTCGTCTTCCCAGTT 59.657 61.111 0.00 0.00 0.00 3.16
1905 2107 4.502016 CGGAGTGCAGATGCTAATATGAT 58.498 43.478 6.35 0.00 42.66 2.45
1932 2134 4.314440 GTCGTGGCTGGGTGCAGA 62.314 66.667 0.00 0.00 45.15 4.26
1936 2138 3.589654 ATGTCGTCGTGGCTGGGTG 62.590 63.158 0.00 0.00 0.00 4.61
1937 2139 3.311110 ATGTCGTCGTGGCTGGGT 61.311 61.111 0.00 0.00 0.00 4.51
1938 2140 2.815211 CATGTCGTCGTGGCTGGG 60.815 66.667 0.00 0.00 0.00 4.45
1939 2141 3.490759 GCATGTCGTCGTGGCTGG 61.491 66.667 4.08 0.00 0.00 4.85
1943 2145 2.613739 ATCTCGGCATGTCGTCGTGG 62.614 60.000 20.64 6.36 45.17 4.94
1944 2146 0.802222 AATCTCGGCATGTCGTCGTG 60.802 55.000 20.64 8.80 45.17 4.35
1945 2147 0.736636 TAATCTCGGCATGTCGTCGT 59.263 50.000 20.64 6.40 45.17 4.34
1950 2152 4.308899 ACAGTAGTAATCTCGGCATGTC 57.691 45.455 0.00 0.00 0.00 3.06
1951 2153 5.131067 TCTACAGTAGTAATCTCGGCATGT 58.869 41.667 7.50 0.00 0.00 3.21
1952 2154 5.690997 TCTACAGTAGTAATCTCGGCATG 57.309 43.478 7.50 0.00 0.00 4.06
1966 2168 6.091849 GCGAGAACACCGATATATCTACAGTA 59.908 42.308 10.93 0.00 0.00 2.74
1967 2169 5.106634 GCGAGAACACCGATATATCTACAGT 60.107 44.000 10.93 1.94 0.00 3.55
1968 2170 5.106673 TGCGAGAACACCGATATATCTACAG 60.107 44.000 10.93 1.37 0.00 2.74
1969 2171 4.758165 TGCGAGAACACCGATATATCTACA 59.242 41.667 10.93 0.00 0.00 2.74
1970 2172 5.292671 TGCGAGAACACCGATATATCTAC 57.707 43.478 10.93 0.00 0.00 2.59
2004 2206 6.541641 ACAAGCTCATCTTCTTGGTATCATTC 59.458 38.462 6.88 0.00 42.82 2.67
2024 2226 1.393539 CAGTACCGTACATGCACAAGC 59.606 52.381 11.26 0.00 42.57 4.01
2054 2258 8.283291 CGAATTATGGCTCTTAATTTGGAGTAC 58.717 37.037 8.47 0.00 31.19 2.73
2057 2267 6.486657 TCCGAATTATGGCTCTTAATTTGGAG 59.513 38.462 22.45 3.82 45.87 3.86
2058 2268 6.633500 CCGAATTATGGCTCTTAATTTGGA 57.367 37.500 20.97 0.00 45.53 3.53
2060 2270 6.632834 CGTTCCGAATTATGGCTCTTAATTTG 59.367 38.462 10.60 10.60 31.19 2.32
2061 2271 6.540914 TCGTTCCGAATTATGGCTCTTAATTT 59.459 34.615 0.00 0.00 31.19 1.82
2062 2272 6.053005 TCGTTCCGAATTATGGCTCTTAATT 58.947 36.000 0.00 6.05 33.16 1.40
2063 2273 5.607477 TCGTTCCGAATTATGGCTCTTAAT 58.393 37.500 0.00 0.00 31.06 1.40
2064 2274 5.013568 TCGTTCCGAATTATGGCTCTTAA 57.986 39.130 0.00 0.00 31.06 1.85
2065 2275 4.659111 TCGTTCCGAATTATGGCTCTTA 57.341 40.909 0.00 0.00 31.06 2.10
2068 2278 2.096218 GCATCGTTCCGAATTATGGCTC 60.096 50.000 7.42 0.00 39.99 4.70
2069 2279 1.873591 GCATCGTTCCGAATTATGGCT 59.126 47.619 7.42 0.00 39.99 4.75
2070 2280 1.069227 GGCATCGTTCCGAATTATGGC 60.069 52.381 13.11 13.11 39.99 4.40
2071 2281 1.535462 GGGCATCGTTCCGAATTATGG 59.465 52.381 7.42 0.00 39.99 2.74
2073 2283 2.631160 TGGGCATCGTTCCGAATTAT 57.369 45.000 0.00 0.00 39.99 1.28
2074 2284 2.217750 CATGGGCATCGTTCCGAATTA 58.782 47.619 0.00 0.00 39.99 1.40
2075 2285 1.024271 CATGGGCATCGTTCCGAATT 58.976 50.000 0.00 0.00 39.99 2.17
2076 2286 1.447317 GCATGGGCATCGTTCCGAAT 61.447 55.000 0.00 0.00 39.99 3.34
2077 2287 2.112198 GCATGGGCATCGTTCCGAA 61.112 57.895 0.00 0.00 39.99 4.30
2078 2288 2.513666 GCATGGGCATCGTTCCGA 60.514 61.111 0.00 0.00 41.13 4.55
2079 2289 2.514592 AGCATGGGCATCGTTCCG 60.515 61.111 0.00 0.00 44.61 4.30
2080 2290 0.820891 ATGAGCATGGGCATCGTTCC 60.821 55.000 0.00 0.00 44.61 3.62
2081 2291 0.590195 GATGAGCATGGGCATCGTTC 59.410 55.000 0.00 0.00 44.61 3.95
2082 2292 0.182061 AGATGAGCATGGGCATCGTT 59.818 50.000 0.00 0.00 44.23 3.85
2083 2293 1.051008 TAGATGAGCATGGGCATCGT 58.949 50.000 0.00 0.00 44.23 3.73
2084 2294 1.001746 AGTAGATGAGCATGGGCATCG 59.998 52.381 0.00 0.00 44.23 3.84
2085 2295 2.855209 AGTAGATGAGCATGGGCATC 57.145 50.000 0.00 0.00 44.61 3.91
2086 2296 2.974794 TGTAGTAGATGAGCATGGGCAT 59.025 45.455 0.00 0.00 44.61 4.40
2087 2297 2.103094 GTGTAGTAGATGAGCATGGGCA 59.897 50.000 0.00 0.00 44.61 5.36
2088 2298 2.548920 GGTGTAGTAGATGAGCATGGGC 60.549 54.545 0.00 0.00 41.61 5.36
2089 2299 2.968574 AGGTGTAGTAGATGAGCATGGG 59.031 50.000 0.00 0.00 0.00 4.00
2090 2300 3.244009 CCAGGTGTAGTAGATGAGCATGG 60.244 52.174 0.00 0.00 0.00 3.66
2091 2301 3.244009 CCCAGGTGTAGTAGATGAGCATG 60.244 52.174 0.00 0.00 0.00 4.06
2092 2302 2.968574 CCCAGGTGTAGTAGATGAGCAT 59.031 50.000 0.00 0.00 0.00 3.79
2093 2303 2.292257 ACCCAGGTGTAGTAGATGAGCA 60.292 50.000 0.00 0.00 0.00 4.26
2094 2304 2.101582 CACCCAGGTGTAGTAGATGAGC 59.898 54.545 8.75 0.00 40.91 4.26
2095 2305 3.632333 TCACCCAGGTGTAGTAGATGAG 58.368 50.000 16.22 0.00 45.55 2.90
2096 2306 3.750501 TCACCCAGGTGTAGTAGATGA 57.249 47.619 16.22 0.00 45.55 2.92
2097 2307 3.513912 TGTTCACCCAGGTGTAGTAGATG 59.486 47.826 16.22 0.00 45.55 2.90
2098 2308 3.769844 CTGTTCACCCAGGTGTAGTAGAT 59.230 47.826 16.22 0.00 45.55 1.98
2099 2309 3.162666 CTGTTCACCCAGGTGTAGTAGA 58.837 50.000 16.22 0.00 45.55 2.59
2100 2310 2.897969 ACTGTTCACCCAGGTGTAGTAG 59.102 50.000 16.22 12.33 45.55 2.57
2101 2311 2.895404 GACTGTTCACCCAGGTGTAGTA 59.105 50.000 16.22 0.00 45.55 1.82
2102 2312 1.692519 GACTGTTCACCCAGGTGTAGT 59.307 52.381 16.22 17.04 45.55 2.73
2103 2313 1.691976 TGACTGTTCACCCAGGTGTAG 59.308 52.381 16.22 14.43 45.55 2.74
2104 2314 1.796017 TGACTGTTCACCCAGGTGTA 58.204 50.000 16.22 4.30 45.55 2.90
2105 2315 0.916086 TTGACTGTTCACCCAGGTGT 59.084 50.000 16.22 0.00 45.55 4.16
2106 2316 2.276732 ATTGACTGTTCACCCAGGTG 57.723 50.000 10.73 10.73 46.64 4.00
2107 2317 4.447138 TTAATTGACTGTTCACCCAGGT 57.553 40.909 0.00 0.00 36.75 4.00
2108 2318 5.782893 TTTTAATTGACTGTTCACCCAGG 57.217 39.130 0.00 0.00 36.75 4.45
2109 2319 9.927668 ATTATTTTTAATTGACTGTTCACCCAG 57.072 29.630 0.00 0.00 38.45 4.45
2156 2366 9.167311 GCATCTTGGATTTCTAAAAGAAGTAGA 57.833 33.333 0.00 0.00 35.37 2.59
2157 2367 9.171877 AGCATCTTGGATTTCTAAAAGAAGTAG 57.828 33.333 0.00 0.00 35.37 2.57
2158 2368 9.167311 GAGCATCTTGGATTTCTAAAAGAAGTA 57.833 33.333 0.00 0.00 35.37 2.24
2159 2369 7.667219 TGAGCATCTTGGATTTCTAAAAGAAGT 59.333 33.333 0.00 0.00 33.47 3.01
2160 2370 8.048534 TGAGCATCTTGGATTTCTAAAAGAAG 57.951 34.615 0.00 0.00 33.47 2.85
2161 2371 8.464404 CATGAGCATCTTGGATTTCTAAAAGAA 58.536 33.333 0.00 0.00 36.69 2.52
2162 2372 7.613022 ACATGAGCATCTTGGATTTCTAAAAGA 59.387 33.333 0.00 0.00 43.84 2.52
2163 2373 7.701078 CACATGAGCATCTTGGATTTCTAAAAG 59.299 37.037 0.00 0.00 43.84 2.27
2164 2374 7.541162 CACATGAGCATCTTGGATTTCTAAAA 58.459 34.615 0.00 0.00 43.84 1.52
2165 2375 6.405065 GCACATGAGCATCTTGGATTTCTAAA 60.405 38.462 10.48 0.00 43.84 1.85
2166 2376 5.066893 GCACATGAGCATCTTGGATTTCTAA 59.933 40.000 10.48 0.00 43.84 2.10
2167 2377 4.577693 GCACATGAGCATCTTGGATTTCTA 59.422 41.667 10.48 0.00 43.84 2.10
2168 2378 3.380637 GCACATGAGCATCTTGGATTTCT 59.619 43.478 10.48 0.00 43.84 2.52
2169 2379 3.703420 GCACATGAGCATCTTGGATTTC 58.297 45.455 10.48 0.00 43.84 2.17
2170 2380 2.098607 CGCACATGAGCATCTTGGATTT 59.901 45.455 15.56 0.00 43.84 2.17
2171 2381 1.674441 CGCACATGAGCATCTTGGATT 59.326 47.619 15.56 0.00 43.84 3.01
2172 2382 1.306148 CGCACATGAGCATCTTGGAT 58.694 50.000 15.56 0.00 43.84 3.41
2173 2383 1.371337 GCGCACATGAGCATCTTGGA 61.371 55.000 15.56 0.00 43.84 3.53
2174 2384 1.063649 GCGCACATGAGCATCTTGG 59.936 57.895 15.56 0.00 43.84 3.61
2175 2385 1.297378 CGCGCACATGAGCATCTTG 60.297 57.895 15.56 0.00 44.95 3.02
2176 2386 2.466982 CCGCGCACATGAGCATCTT 61.467 57.895 15.56 0.00 41.01 2.40
2177 2387 2.857575 TTCCGCGCACATGAGCATCT 62.858 55.000 15.56 0.00 41.01 2.90
2178 2388 1.980951 TTTCCGCGCACATGAGCATC 61.981 55.000 15.56 5.26 41.01 3.91
2179 2389 1.585267 TTTTCCGCGCACATGAGCAT 61.585 50.000 15.56 0.00 41.01 3.79
2180 2390 1.585267 ATTTTCCGCGCACATGAGCA 61.585 50.000 15.56 0.00 41.01 4.26
2181 2391 0.456653 AATTTTCCGCGCACATGAGC 60.457 50.000 8.75 4.89 37.50 4.26
2182 2392 1.913403 GAAATTTTCCGCGCACATGAG 59.087 47.619 8.75 0.00 0.00 2.90
2183 2393 1.727535 CGAAATTTTCCGCGCACATGA 60.728 47.619 8.75 0.00 0.00 3.07
2184 2394 0.634731 CGAAATTTTCCGCGCACATG 59.365 50.000 8.75 0.00 0.00 3.21
2185 2395 0.455972 CCGAAATTTTCCGCGCACAT 60.456 50.000 8.75 0.00 0.00 3.21
2186 2396 1.081774 CCGAAATTTTCCGCGCACA 60.082 52.632 8.75 0.00 0.00 4.57
2187 2397 1.799916 CCCGAAATTTTCCGCGCAC 60.800 57.895 8.75 0.00 0.00 5.34
2188 2398 2.563942 CCCGAAATTTTCCGCGCA 59.436 55.556 8.75 0.00 0.00 6.09
2189 2399 2.202557 CCCCGAAATTTTCCGCGC 60.203 61.111 0.00 0.00 0.00 6.86
2190 2400 1.154112 CACCCCGAAATTTTCCGCG 60.154 57.895 0.00 0.00 0.00 6.46
2191 2401 0.315886 AACACCCCGAAATTTTCCGC 59.684 50.000 3.61 0.00 0.00 5.54
2192 2402 1.400500 CGAACACCCCGAAATTTTCCG 60.400 52.381 3.61 0.00 0.00 4.30
2193 2403 1.068125 CCGAACACCCCGAAATTTTCC 60.068 52.381 3.61 0.00 0.00 3.13
2194 2404 1.881324 TCCGAACACCCCGAAATTTTC 59.119 47.619 0.00 0.00 0.00 2.29
2195 2405 1.610038 GTCCGAACACCCCGAAATTTT 59.390 47.619 0.00 0.00 0.00 1.82
2196 2406 1.241165 GTCCGAACACCCCGAAATTT 58.759 50.000 0.00 0.00 0.00 1.82
2197 2407 0.108963 TGTCCGAACACCCCGAAATT 59.891 50.000 0.00 0.00 0.00 1.82
2198 2408 0.326927 ATGTCCGAACACCCCGAAAT 59.673 50.000 0.00 0.00 38.48 2.17
2199 2409 0.108963 AATGTCCGAACACCCCGAAA 59.891 50.000 0.00 0.00 38.48 3.46
2200 2410 0.108963 AAATGTCCGAACACCCCGAA 59.891 50.000 0.00 0.00 38.48 4.30
2201 2411 0.604243 CAAATGTCCGAACACCCCGA 60.604 55.000 0.00 0.00 38.48 5.14
2202 2412 0.604243 TCAAATGTCCGAACACCCCG 60.604 55.000 0.00 0.00 38.48 5.73
2203 2413 1.472480 CATCAAATGTCCGAACACCCC 59.528 52.381 0.00 0.00 38.48 4.95
2204 2414 2.420022 CTCATCAAATGTCCGAACACCC 59.580 50.000 0.00 0.00 38.48 4.61
2205 2415 2.159517 GCTCATCAAATGTCCGAACACC 60.160 50.000 0.00 0.00 38.48 4.16
2206 2416 2.474526 CGCTCATCAAATGTCCGAACAC 60.475 50.000 0.00 0.00 38.48 3.32
2207 2417 1.731709 CGCTCATCAAATGTCCGAACA 59.268 47.619 0.00 0.00 40.38 3.18
2208 2418 1.999735 TCGCTCATCAAATGTCCGAAC 59.000 47.619 0.00 0.00 33.58 3.95
2209 2419 2.378445 TCGCTCATCAAATGTCCGAA 57.622 45.000 0.00 0.00 33.58 4.30
2210 2420 1.999735 GTTCGCTCATCAAATGTCCGA 59.000 47.619 0.00 0.00 34.23 4.55
2211 2421 1.731709 TGTTCGCTCATCAAATGTCCG 59.268 47.619 0.00 0.00 0.00 4.79
2212 2422 3.829886 TTGTTCGCTCATCAAATGTCC 57.170 42.857 0.00 0.00 0.00 4.02
2240 2450 9.453572 TGAAAAAGAATACTGTTCATAGCTGAT 57.546 29.630 0.00 0.00 30.89 2.90
2241 2451 8.846943 TGAAAAAGAATACTGTTCATAGCTGA 57.153 30.769 0.00 0.00 30.89 4.26
2242 2452 9.897744 TTTGAAAAAGAATACTGTTCATAGCTG 57.102 29.630 0.00 0.00 33.78 4.24
2244 2454 9.899226 ACTTTGAAAAAGAATACTGTTCATAGC 57.101 29.630 6.73 0.00 35.74 2.97
2256 2466 9.958234 GCTCTCTAAGAAACTTTGAAAAAGAAT 57.042 29.630 6.73 0.00 0.00 2.40
2257 2467 9.178758 AGCTCTCTAAGAAACTTTGAAAAAGAA 57.821 29.630 6.73 0.00 0.00 2.52
2258 2468 8.738645 AGCTCTCTAAGAAACTTTGAAAAAGA 57.261 30.769 6.73 0.00 0.00 2.52
2264 2474 9.561069 ACAATTTAGCTCTCTAAGAAACTTTGA 57.439 29.630 0.00 0.00 36.27 2.69
2270 2480 9.965824 CCAAAAACAATTTAGCTCTCTAAGAAA 57.034 29.630 0.00 0.00 36.27 2.52
2271 2481 8.082242 GCCAAAAACAATTTAGCTCTCTAAGAA 58.918 33.333 0.00 0.00 36.27 2.52
2272 2482 7.230510 TGCCAAAAACAATTTAGCTCTCTAAGA 59.769 33.333 0.00 0.00 36.27 2.10
2273 2483 7.327032 GTGCCAAAAACAATTTAGCTCTCTAAG 59.673 37.037 0.00 0.00 36.27 2.18
2274 2484 7.145323 GTGCCAAAAACAATTTAGCTCTCTAA 58.855 34.615 0.00 0.00 32.15 2.10
2275 2485 6.567701 CGTGCCAAAAACAATTTAGCTCTCTA 60.568 38.462 0.00 0.00 32.15 2.43
2276 2486 5.532557 GTGCCAAAAACAATTTAGCTCTCT 58.467 37.500 0.00 0.00 32.15 3.10
2277 2487 4.382754 CGTGCCAAAAACAATTTAGCTCTC 59.617 41.667 0.00 0.00 32.15 3.20
2278 2488 4.037446 TCGTGCCAAAAACAATTTAGCTCT 59.963 37.500 0.00 0.00 32.15 4.09
2279 2489 4.295051 TCGTGCCAAAAACAATTTAGCTC 58.705 39.130 0.00 0.00 32.15 4.09
2280 2490 4.298332 CTCGTGCCAAAAACAATTTAGCT 58.702 39.130 0.00 0.00 32.15 3.32
2281 2491 3.121025 GCTCGTGCCAAAAACAATTTAGC 60.121 43.478 0.00 0.00 0.00 3.09
2282 2492 4.298332 AGCTCGTGCCAAAAACAATTTAG 58.702 39.130 5.73 0.00 40.80 1.85
2283 2493 4.314740 AGCTCGTGCCAAAAACAATTTA 57.685 36.364 5.73 0.00 40.80 1.40
2284 2494 3.177997 AGCTCGTGCCAAAAACAATTT 57.822 38.095 5.73 0.00 40.80 1.82
2285 2495 2.888834 AGCTCGTGCCAAAAACAATT 57.111 40.000 5.73 0.00 40.80 2.32
2286 2496 2.362077 AGAAGCTCGTGCCAAAAACAAT 59.638 40.909 5.73 0.00 40.80 2.71
2287 2497 1.748493 AGAAGCTCGTGCCAAAAACAA 59.252 42.857 5.73 0.00 40.80 2.83
2288 2498 1.333619 GAGAAGCTCGTGCCAAAAACA 59.666 47.619 5.73 0.00 40.80 2.83
2289 2499 1.333619 TGAGAAGCTCGTGCCAAAAAC 59.666 47.619 5.73 0.00 40.80 2.43
2290 2500 1.603802 CTGAGAAGCTCGTGCCAAAAA 59.396 47.619 5.73 0.00 40.80 1.94
2291 2501 1.202639 TCTGAGAAGCTCGTGCCAAAA 60.203 47.619 5.73 0.00 40.80 2.44
2292 2502 0.392706 TCTGAGAAGCTCGTGCCAAA 59.607 50.000 5.73 0.00 40.80 3.28
2293 2503 0.610174 ATCTGAGAAGCTCGTGCCAA 59.390 50.000 5.73 0.00 40.80 4.52
2294 2504 0.108472 CATCTGAGAAGCTCGTGCCA 60.108 55.000 5.73 0.00 40.80 4.92
2295 2505 0.108424 ACATCTGAGAAGCTCGTGCC 60.108 55.000 5.73 0.00 40.80 5.01
2296 2506 1.658095 GAACATCTGAGAAGCTCGTGC 59.342 52.381 0.07 0.07 40.05 5.34
2297 2507 2.951726 TGAACATCTGAGAAGCTCGTG 58.048 47.619 0.00 0.00 32.35 4.35
2298 2508 3.667497 TTGAACATCTGAGAAGCTCGT 57.333 42.857 0.00 0.00 32.35 4.18
2299 2509 3.742882 TGTTTGAACATCTGAGAAGCTCG 59.257 43.478 0.00 0.00 33.17 5.03
2300 2510 4.083590 GGTGTTTGAACATCTGAGAAGCTC 60.084 45.833 0.00 0.00 41.59 4.09
2301 2511 3.817647 GGTGTTTGAACATCTGAGAAGCT 59.182 43.478 0.00 0.00 41.59 3.74
2302 2512 3.565482 TGGTGTTTGAACATCTGAGAAGC 59.435 43.478 8.44 0.00 40.66 3.86
2303 2513 5.954296 ATGGTGTTTGAACATCTGAGAAG 57.046 39.130 8.44 0.00 40.66 2.85
2304 2514 7.815840 TTTATGGTGTTTGAACATCTGAGAA 57.184 32.000 8.44 0.00 40.66 2.87
2305 2515 7.815840 TTTTATGGTGTTTGAACATCTGAGA 57.184 32.000 8.44 0.00 40.66 3.27
2309 2519 9.369904 GCAATATTTTATGGTGTTTGAACATCT 57.630 29.630 8.44 0.00 40.66 2.90
2310 2520 9.149225 TGCAATATTTTATGGTGTTTGAACATC 57.851 29.630 0.00 0.00 41.59 3.06
2311 2521 9.669887 ATGCAATATTTTATGGTGTTTGAACAT 57.330 25.926 0.00 0.00 41.59 2.71
2312 2522 8.933807 CATGCAATATTTTATGGTGTTTGAACA 58.066 29.630 0.00 0.00 36.38 3.18
2313 2523 7.904461 GCATGCAATATTTTATGGTGTTTGAAC 59.096 33.333 14.21 0.00 0.00 3.18
2314 2524 7.605309 TGCATGCAATATTTTATGGTGTTTGAA 59.395 29.630 20.30 0.00 0.00 2.69
2315 2525 7.101700 TGCATGCAATATTTTATGGTGTTTGA 58.898 30.769 20.30 0.00 0.00 2.69
2316 2526 7.304919 TGCATGCAATATTTTATGGTGTTTG 57.695 32.000 20.30 0.00 0.00 2.93
2317 2527 7.769507 TCATGCATGCAATATTTTATGGTGTTT 59.230 29.630 26.68 0.00 0.00 2.83
2318 2528 7.273712 TCATGCATGCAATATTTTATGGTGTT 58.726 30.769 26.68 0.00 0.00 3.32
2319 2529 6.818233 TCATGCATGCAATATTTTATGGTGT 58.182 32.000 26.68 0.00 0.00 4.16
2320 2530 6.128661 GCTCATGCATGCAATATTTTATGGTG 60.129 38.462 26.68 13.59 39.41 4.17
2321 2531 5.929992 GCTCATGCATGCAATATTTTATGGT 59.070 36.000 26.68 0.00 39.41 3.55
2322 2532 5.929415 TGCTCATGCATGCAATATTTTATGG 59.071 36.000 26.68 10.43 45.31 2.74
2338 2548 0.314302 GGCATCCAAGATGCTCATGC 59.686 55.000 24.33 7.96 44.02 4.06
2339 2549 1.982660 AGGCATCCAAGATGCTCATG 58.017 50.000 24.33 0.00 44.02 3.07
2340 2550 3.870538 TTAGGCATCCAAGATGCTCAT 57.129 42.857 24.33 15.17 44.02 2.90
2341 2551 3.650281 TTTAGGCATCCAAGATGCTCA 57.350 42.857 24.33 12.66 44.02 4.26
2342 2552 5.526506 AAATTTAGGCATCCAAGATGCTC 57.473 39.130 24.33 16.20 44.02 4.26
2343 2553 5.945144 AAAATTTAGGCATCCAAGATGCT 57.055 34.783 24.33 14.93 44.02 3.79
2344 2554 7.491682 TCTAAAAATTTAGGCATCCAAGATGC 58.508 34.615 18.97 18.97 43.85 3.91
2383 2593 7.095523 CCTCGGACGTGAAGAAAATAGTAAAAA 60.096 37.037 0.00 0.00 0.00 1.94
2384 2594 6.366877 CCTCGGACGTGAAGAAAATAGTAAAA 59.633 38.462 0.00 0.00 0.00 1.52
2385 2595 5.865552 CCTCGGACGTGAAGAAAATAGTAAA 59.134 40.000 0.00 0.00 0.00 2.01
2386 2596 5.047802 ACCTCGGACGTGAAGAAAATAGTAA 60.048 40.000 0.00 0.00 0.00 2.24
2387 2597 4.460382 ACCTCGGACGTGAAGAAAATAGTA 59.540 41.667 0.00 0.00 0.00 1.82
2388 2598 3.257624 ACCTCGGACGTGAAGAAAATAGT 59.742 43.478 0.00 0.00 0.00 2.12
2389 2599 3.612860 CACCTCGGACGTGAAGAAAATAG 59.387 47.826 0.00 0.00 32.77 1.73
2390 2600 3.006110 ACACCTCGGACGTGAAGAAAATA 59.994 43.478 12.99 0.00 35.17 1.40
2391 2601 2.224209 ACACCTCGGACGTGAAGAAAAT 60.224 45.455 12.99 0.00 35.17 1.82
2392 2602 1.137479 ACACCTCGGACGTGAAGAAAA 59.863 47.619 12.99 0.00 35.17 2.29
2393 2603 0.748450 ACACCTCGGACGTGAAGAAA 59.252 50.000 12.99 0.00 35.17 2.52
2394 2604 1.538512 CTACACCTCGGACGTGAAGAA 59.461 52.381 12.99 0.00 35.17 2.52
2395 2605 1.162698 CTACACCTCGGACGTGAAGA 58.837 55.000 12.99 0.00 35.17 2.87
2396 2606 1.162698 TCTACACCTCGGACGTGAAG 58.837 55.000 12.99 0.00 35.17 3.02
2406 2616 5.360144 TGTAACTCAGGCTTATCTACACCTC 59.640 44.000 0.00 0.00 0.00 3.85
2438 2648 4.913335 TCGAAGATCATAAAGCCGTACT 57.087 40.909 0.00 0.00 0.00 2.73
2469 2679 1.346068 GAAGGCTTGAGACTGACAGGT 59.654 52.381 3.46 0.00 30.66 4.00
2482 2692 4.984146 AGTAGGACAAAAGAGAAGGCTT 57.016 40.909 0.00 0.00 0.00 4.35
2494 2704 5.421056 AGATAACGATGACCAAGTAGGACAA 59.579 40.000 0.00 0.00 45.00 3.18
2503 2713 6.861055 GCAAAAAGAAAGATAACGATGACCAA 59.139 34.615 0.00 0.00 0.00 3.67
2506 2716 7.851822 TTGCAAAAAGAAAGATAACGATGAC 57.148 32.000 0.00 0.00 0.00 3.06
2531 2751 1.360185 ATTTTGCATGCTTTCCCCCA 58.640 45.000 20.33 0.00 0.00 4.96
2625 2845 2.436109 GGTCTGCCCCTGCTTTCA 59.564 61.111 0.00 0.00 38.71 2.69
2642 2862 4.587056 GGCTTAGCCCAATCCTGG 57.413 61.111 13.12 0.00 44.06 4.45
2665 2885 2.444140 ACTGTAGGCGGCCTAGGG 60.444 66.667 28.44 23.46 36.71 3.53
2666 2886 2.815308 CACTGTAGGCGGCCTAGG 59.185 66.667 28.44 23.79 36.71 3.02
2667 2887 2.107141 GCACTGTAGGCGGCCTAG 59.893 66.667 28.44 21.61 36.71 3.02
2668 2888 3.467226 GGCACTGTAGGCGGCCTA 61.467 66.667 24.51 24.51 43.09 3.93
2671 2891 2.602746 TTATGGGCACTGTAGGCGGC 62.603 60.000 0.00 0.00 34.40 6.53
2672 2892 0.107410 TTTATGGGCACTGTAGGCGG 60.107 55.000 0.00 0.00 34.40 6.13
2673 2893 1.400494 GTTTTATGGGCACTGTAGGCG 59.600 52.381 0.00 0.00 34.40 5.52
2674 2894 2.442413 TGTTTTATGGGCACTGTAGGC 58.558 47.619 0.00 0.00 0.00 3.93
2675 2895 5.278463 GCATATGTTTTATGGGCACTGTAGG 60.278 44.000 4.29 0.00 0.00 3.18
2676 2896 5.299028 TGCATATGTTTTATGGGCACTGTAG 59.701 40.000 4.29 0.00 0.00 2.74
2677 2897 5.196695 TGCATATGTTTTATGGGCACTGTA 58.803 37.500 4.29 0.00 0.00 2.74
2678 2898 4.022603 TGCATATGTTTTATGGGCACTGT 58.977 39.130 4.29 0.00 0.00 3.55
2679 2899 4.652421 TGCATATGTTTTATGGGCACTG 57.348 40.909 4.29 0.00 0.00 3.66
2680 2900 5.874897 AATGCATATGTTTTATGGGCACT 57.125 34.783 0.00 0.00 32.04 4.40
2681 2901 5.925969 GGTAATGCATATGTTTTATGGGCAC 59.074 40.000 0.00 0.00 32.04 5.01
2682 2902 5.600069 TGGTAATGCATATGTTTTATGGGCA 59.400 36.000 0.00 0.00 0.00 5.36
2683 2903 6.015519 TCTGGTAATGCATATGTTTTATGGGC 60.016 38.462 0.00 0.00 0.00 5.36
2684 2904 7.523293 TCTGGTAATGCATATGTTTTATGGG 57.477 36.000 0.00 0.00 0.00 4.00
2685 2905 9.467258 CTTTCTGGTAATGCATATGTTTTATGG 57.533 33.333 0.00 0.00 0.00 2.74
2686 2906 9.467258 CCTTTCTGGTAATGCATATGTTTTATG 57.533 33.333 0.00 0.00 0.00 1.90
2687 2907 8.641541 CCCTTTCTGGTAATGCATATGTTTTAT 58.358 33.333 0.00 0.00 0.00 1.40
2688 2908 7.617723 ACCCTTTCTGGTAATGCATATGTTTTA 59.382 33.333 0.00 0.42 36.67 1.52
2700 2920 6.069381 AGCTTAGATTCACCCTTTCTGGTAAT 60.069 38.462 0.00 0.00 36.67 1.89
2738 2959 9.439500 ACCACATTCCATCAGAAAATAAATTTG 57.561 29.630 0.00 0.00 38.21 2.32
2749 2970 4.620723 ACTACCTACCACATTCCATCAGA 58.379 43.478 0.00 0.00 0.00 3.27
2762 2983 5.009510 GGGAGAAGAACGATTACTACCTACC 59.990 48.000 0.00 0.00 0.00 3.18
2763 2984 5.591877 TGGGAGAAGAACGATTACTACCTAC 59.408 44.000 0.00 0.00 33.19 3.18
2782 3003 5.665459 CATTTAGGTCACTACTTCTGGGAG 58.335 45.833 0.00 0.00 0.00 4.30
2863 3084 4.805192 CCTTTGCACCCGATGATAAAAATG 59.195 41.667 0.00 0.00 0.00 2.32
2864 3085 4.466015 ACCTTTGCACCCGATGATAAAAAT 59.534 37.500 0.00 0.00 0.00 1.82
2865 3086 3.829601 ACCTTTGCACCCGATGATAAAAA 59.170 39.130 0.00 0.00 0.00 1.94
2866 3087 3.426615 ACCTTTGCACCCGATGATAAAA 58.573 40.909 0.00 0.00 0.00 1.52
2867 3088 3.013921 GACCTTTGCACCCGATGATAAA 58.986 45.455 0.00 0.00 0.00 1.40
2868 3089 2.026729 TGACCTTTGCACCCGATGATAA 60.027 45.455 0.00 0.00 0.00 1.75
2873 3094 1.002134 CCTGACCTTTGCACCCGAT 60.002 57.895 0.00 0.00 0.00 4.18
2876 3097 0.623723 TATCCCTGACCTTTGCACCC 59.376 55.000 0.00 0.00 0.00 4.61
2878 3099 3.381590 GGATTTATCCCTGACCTTTGCAC 59.618 47.826 0.00 0.00 41.20 4.57
2928 3152 9.896645 AGGATACACATAGCCATATTGATTAAG 57.103 33.333 0.00 0.00 39.54 1.85
2934 3158 6.475504 TCCAAGGATACACATAGCCATATTG 58.524 40.000 0.00 0.00 39.54 1.90
2963 3187 4.141642 TGCATCAGACAATACACATAGCCT 60.142 41.667 0.00 0.00 0.00 4.58
2964 3188 4.129380 TGCATCAGACAATACACATAGCC 58.871 43.478 0.00 0.00 0.00 3.93
2967 3191 6.179756 ACCTTTGCATCAGACAATACACATA 58.820 36.000 0.00 0.00 0.00 2.29
2974 3198 3.007182 CCCAAACCTTTGCATCAGACAAT 59.993 43.478 0.00 0.00 36.86 2.71
2976 3200 1.962807 CCCAAACCTTTGCATCAGACA 59.037 47.619 0.00 0.00 36.86 3.41
2978 3202 2.380064 ACCCAAACCTTTGCATCAGA 57.620 45.000 0.00 0.00 36.86 3.27
2993 3217 4.219919 CTTTGAAAAGGAGGGTTTACCCA 58.780 43.478 19.76 0.00 44.20 4.51
3004 3228 7.040686 GCACCAGAACTATTACTTTGAAAAGGA 60.041 37.037 7.65 0.00 40.31 3.36
3005 3229 7.084486 GCACCAGAACTATTACTTTGAAAAGG 58.916 38.462 7.65 0.00 40.31 3.11
3006 3230 7.648142 TGCACCAGAACTATTACTTTGAAAAG 58.352 34.615 1.22 1.22 41.73 2.27
3007 3231 7.575414 TGCACCAGAACTATTACTTTGAAAA 57.425 32.000 0.00 0.00 0.00 2.29
3008 3232 7.759489 ATGCACCAGAACTATTACTTTGAAA 57.241 32.000 0.00 0.00 0.00 2.69
3009 3233 7.230510 ACAATGCACCAGAACTATTACTTTGAA 59.769 33.333 0.00 0.00 0.00 2.69
3010 3234 6.714810 ACAATGCACCAGAACTATTACTTTGA 59.285 34.615 0.00 0.00 0.00 2.69
3011 3235 6.913170 ACAATGCACCAGAACTATTACTTTG 58.087 36.000 0.00 0.00 0.00 2.77
3012 3236 6.714810 TGACAATGCACCAGAACTATTACTTT 59.285 34.615 0.00 0.00 0.00 2.66
3013 3237 6.237901 TGACAATGCACCAGAACTATTACTT 58.762 36.000 0.00 0.00 0.00 2.24
3014 3238 5.804639 TGACAATGCACCAGAACTATTACT 58.195 37.500 0.00 0.00 0.00 2.24
3015 3239 6.458751 CCATGACAATGCACCAGAACTATTAC 60.459 42.308 0.00 0.00 31.93 1.89
3016 3240 5.589855 CCATGACAATGCACCAGAACTATTA 59.410 40.000 0.00 0.00 31.93 0.98
3017 3241 4.400251 CCATGACAATGCACCAGAACTATT 59.600 41.667 0.00 0.00 31.93 1.73
3018 3242 3.949754 CCATGACAATGCACCAGAACTAT 59.050 43.478 0.00 0.00 31.93 2.12
3019 3243 3.008923 TCCATGACAATGCACCAGAACTA 59.991 43.478 0.00 0.00 31.93 2.24
3020 3244 2.165167 CCATGACAATGCACCAGAACT 58.835 47.619 0.00 0.00 31.93 3.01
3021 3245 2.161855 TCCATGACAATGCACCAGAAC 58.838 47.619 0.00 0.00 31.93 3.01
3022 3246 2.557924 GTTCCATGACAATGCACCAGAA 59.442 45.455 0.00 0.00 31.93 3.02
3023 3247 2.161855 GTTCCATGACAATGCACCAGA 58.838 47.619 0.00 0.00 31.93 3.86
3024 3248 1.887854 TGTTCCATGACAATGCACCAG 59.112 47.619 0.00 0.00 31.93 4.00
3025 3249 1.992538 TGTTCCATGACAATGCACCA 58.007 45.000 0.00 0.00 31.93 4.17
3026 3250 3.598019 ATTGTTCCATGACAATGCACC 57.402 42.857 10.97 0.00 45.75 5.01
3032 3256 8.511321 GTGTATAAGTTCATTGTTCCATGACAA 58.489 33.333 2.76 2.76 43.08 3.18
3033 3257 7.663493 TGTGTATAAGTTCATTGTTCCATGACA 59.337 33.333 0.00 0.00 0.00 3.58
3034 3258 8.039603 TGTGTATAAGTTCATTGTTCCATGAC 57.960 34.615 0.00 0.00 0.00 3.06
3035 3259 8.100164 TCTGTGTATAAGTTCATTGTTCCATGA 58.900 33.333 0.00 0.00 0.00 3.07
3036 3260 8.177663 GTCTGTGTATAAGTTCATTGTTCCATG 58.822 37.037 0.00 0.00 0.00 3.66
3037 3261 7.882791 TGTCTGTGTATAAGTTCATTGTTCCAT 59.117 33.333 0.00 0.00 0.00 3.41
3038 3262 7.220740 TGTCTGTGTATAAGTTCATTGTTCCA 58.779 34.615 0.00 0.00 0.00 3.53
3039 3263 7.667043 TGTCTGTGTATAAGTTCATTGTTCC 57.333 36.000 0.00 0.00 0.00 3.62
3040 3264 9.546909 CAATGTCTGTGTATAAGTTCATTGTTC 57.453 33.333 0.00 0.00 35.72 3.18
3041 3265 9.283768 TCAATGTCTGTGTATAAGTTCATTGTT 57.716 29.630 0.00 0.00 38.13 2.83
3042 3266 8.846943 TCAATGTCTGTGTATAAGTTCATTGT 57.153 30.769 0.00 0.00 38.13 2.71
3043 3267 9.926751 GATCAATGTCTGTGTATAAGTTCATTG 57.073 33.333 0.00 0.00 38.19 2.82
3044 3268 9.671279 TGATCAATGTCTGTGTATAAGTTCATT 57.329 29.630 0.00 0.00 0.00 2.57
3045 3269 9.671279 TTGATCAATGTCTGTGTATAAGTTCAT 57.329 29.630 3.38 0.00 0.00 2.57
3046 3270 9.500785 TTTGATCAATGTCTGTGTATAAGTTCA 57.499 29.630 9.40 0.00 0.00 3.18
3047 3271 9.760660 GTTTGATCAATGTCTGTGTATAAGTTC 57.239 33.333 9.40 0.00 0.00 3.01
3048 3272 8.443160 CGTTTGATCAATGTCTGTGTATAAGTT 58.557 33.333 9.40 0.00 0.00 2.66
3049 3273 7.602644 ACGTTTGATCAATGTCTGTGTATAAGT 59.397 33.333 9.40 0.00 27.01 2.24
3050 3274 7.963981 ACGTTTGATCAATGTCTGTGTATAAG 58.036 34.615 9.40 0.00 27.01 1.73
3051 3275 7.899178 ACGTTTGATCAATGTCTGTGTATAA 57.101 32.000 9.40 0.00 27.01 0.98
3052 3276 7.899178 AACGTTTGATCAATGTCTGTGTATA 57.101 32.000 9.40 0.00 33.04 1.47
3053 3277 6.801539 AACGTTTGATCAATGTCTGTGTAT 57.198 33.333 9.40 0.00 33.04 2.29
3054 3278 7.899178 ATAACGTTTGATCAATGTCTGTGTA 57.101 32.000 9.40 1.35 33.04 2.90
3055 3279 6.801539 ATAACGTTTGATCAATGTCTGTGT 57.198 33.333 9.40 0.00 33.04 3.72
3056 3280 7.077605 ACAATAACGTTTGATCAATGTCTGTG 58.922 34.615 9.40 11.18 33.04 3.66
3057 3281 7.202016 ACAATAACGTTTGATCAATGTCTGT 57.798 32.000 9.40 11.69 33.04 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.