Multiple sequence alignment - TraesCS5B01G241500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G241500 chr5B 100.000 3158 0 0 1 3158 421498445 421501602 0.000000e+00 5832.0
1 TraesCS5B01G241500 chr5A 94.507 1966 61 14 917 2865 456099974 456098039 0.000000e+00 2988.0
2 TraesCS5B01G241500 chr5A 89.879 494 31 6 394 870 456104005 456103514 4.480000e-173 617.0
3 TraesCS5B01G241500 chr5D 94.118 1836 56 18 905 2732 356636714 356638505 0.000000e+00 2745.0
4 TraesCS5B01G241500 chr5D 95.200 125 6 0 2743 2867 356639517 356639641 6.910000e-47 198.0
5 TraesCS5B01G241500 chr5D 87.248 149 13 1 2868 3010 375171733 375171881 7.010000e-37 165.0
6 TraesCS5B01G241500 chr5D 85.276 163 15 5 2862 3017 375164631 375164791 3.260000e-35 159.0
7 TraesCS5B01G241500 chr6B 76.386 1317 284 20 985 2292 52981060 52979762 0.000000e+00 684.0
8 TraesCS5B01G241500 chr6B 76.763 1205 253 21 997 2189 62389795 62390984 0.000000e+00 649.0
9 TraesCS5B01G241500 chr6B 76.331 1183 259 16 985 2158 52568258 52567088 5.790000e-172 614.0
10 TraesCS5B01G241500 chr6B 75.896 1228 255 34 983 2189 53077159 53075952 9.760000e-165 590.0
11 TraesCS5B01G241500 chr6B 75.853 1172 264 14 995 2158 16429001 16430161 2.110000e-161 579.0
12 TraesCS5B01G241500 chr6B 75.242 1240 275 23 963 2185 53062549 53061325 7.650000e-156 560.0
13 TraesCS5B01G241500 chr6B 75.126 1186 254 33 999 2166 670533459 670532297 4.670000e-143 518.0
14 TraesCS5B01G241500 chr6B 78.278 778 147 18 1521 2287 16339500 16340266 6.130000e-132 481.0
15 TraesCS5B01G241500 chr6B 76.744 774 174 6 1418 2189 15219322 15218553 8.090000e-116 427.0
16 TraesCS5B01G241500 chr6A 77.660 1128 212 29 993 2102 9336035 9337140 0.000000e+00 651.0
17 TraesCS5B01G241500 chr6A 76.159 1208 241 20 999 2183 18732376 18733559 2.710000e-165 592.0
18 TraesCS5B01G241500 chr6D 76.777 1210 247 22 997 2183 18001615 18000417 0.000000e+00 647.0
19 TraesCS5B01G241500 chr6D 76.409 1153 249 19 997 2136 16775747 16774605 4.510000e-168 601.0
20 TraesCS5B01G241500 chr6D 95.294 85 4 0 3052 3136 459281086 459281002 5.490000e-28 135.0
21 TraesCS5B01G241500 chr1B 76.697 1090 230 20 1116 2192 27678003 27676925 4.540000e-163 584.0
22 TraesCS5B01G241500 chr1B 74.490 1372 309 37 984 2337 662153016 662154364 9.890000e-155 556.0
23 TraesCS5B01G241500 chr1A 76.083 1154 241 28 999 2137 589248496 589247363 1.270000e-158 569.0
24 TraesCS5B01G241500 chr1A 85.906 149 14 3 2868 3010 498800914 498801061 5.460000e-33 152.0
25 TraesCS5B01G241500 chr7A 96.970 297 3 1 2868 3158 692900718 692901014 7.870000e-136 494.0
26 TraesCS5B01G241500 chr2A 85.953 299 36 4 2865 3158 696279544 696279841 6.580000e-82 315.0
27 TraesCS5B01G241500 chr2A 85.522 297 36 5 2868 3158 20273381 20273086 1.420000e-78 303.0
28 TraesCS5B01G241500 chr2A 85.475 179 16 7 2868 3038 690320023 690320199 9.000000e-41 178.0
29 TraesCS5B01G241500 chr3D 87.931 174 19 2 2867 3038 590161450 590161277 1.480000e-48 204.0
30 TraesCS5B01G241500 chrUn 80.672 238 37 6 2108 2344 42220936 42220707 3.240000e-40 176.0
31 TraesCS5B01G241500 chr4B 87.919 149 12 1 2868 3010 106494318 106494466 1.510000e-38 171.0
32 TraesCS5B01G241500 chr4A 100.000 33 0 0 777 809 676910386 676910418 9.460000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G241500 chr5B 421498445 421501602 3157 False 5832.0 5832 100.000 1 3158 1 chr5B.!!$F1 3157
1 TraesCS5B01G241500 chr5A 456098039 456104005 5966 True 1802.5 2988 92.193 394 2865 2 chr5A.!!$R1 2471
2 TraesCS5B01G241500 chr5D 356636714 356639641 2927 False 1471.5 2745 94.659 905 2867 2 chr5D.!!$F3 1962
3 TraesCS5B01G241500 chr6B 52979762 52981060 1298 True 684.0 684 76.386 985 2292 1 chr6B.!!$R3 1307
4 TraesCS5B01G241500 chr6B 62389795 62390984 1189 False 649.0 649 76.763 997 2189 1 chr6B.!!$F3 1192
5 TraesCS5B01G241500 chr6B 52567088 52568258 1170 True 614.0 614 76.331 985 2158 1 chr6B.!!$R2 1173
6 TraesCS5B01G241500 chr6B 53075952 53077159 1207 True 590.0 590 75.896 983 2189 1 chr6B.!!$R5 1206
7 TraesCS5B01G241500 chr6B 16429001 16430161 1160 False 579.0 579 75.853 995 2158 1 chr6B.!!$F2 1163
8 TraesCS5B01G241500 chr6B 53061325 53062549 1224 True 560.0 560 75.242 963 2185 1 chr6B.!!$R4 1222
9 TraesCS5B01G241500 chr6B 670532297 670533459 1162 True 518.0 518 75.126 999 2166 1 chr6B.!!$R6 1167
10 TraesCS5B01G241500 chr6B 16339500 16340266 766 False 481.0 481 78.278 1521 2287 1 chr6B.!!$F1 766
11 TraesCS5B01G241500 chr6B 15218553 15219322 769 True 427.0 427 76.744 1418 2189 1 chr6B.!!$R1 771
12 TraesCS5B01G241500 chr6A 9336035 9337140 1105 False 651.0 651 77.660 993 2102 1 chr6A.!!$F1 1109
13 TraesCS5B01G241500 chr6A 18732376 18733559 1183 False 592.0 592 76.159 999 2183 1 chr6A.!!$F2 1184
14 TraesCS5B01G241500 chr6D 18000417 18001615 1198 True 647.0 647 76.777 997 2183 1 chr6D.!!$R2 1186
15 TraesCS5B01G241500 chr6D 16774605 16775747 1142 True 601.0 601 76.409 997 2136 1 chr6D.!!$R1 1139
16 TraesCS5B01G241500 chr1B 27676925 27678003 1078 True 584.0 584 76.697 1116 2192 1 chr1B.!!$R1 1076
17 TraesCS5B01G241500 chr1B 662153016 662154364 1348 False 556.0 556 74.490 984 2337 1 chr1B.!!$F1 1353
18 TraesCS5B01G241500 chr1A 589247363 589248496 1133 True 569.0 569 76.083 999 2137 1 chr1A.!!$R1 1138


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.032678 CGAGGCAGCAGATACGGAAT 59.967 55.0 0.00 0.0 0.00 3.01 F
363 364 0.098376 GAACGCGTCCTAGTCATCGT 59.902 55.0 14.44 0.0 0.00 3.73 F
591 592 0.108138 GTATGAGCGCTTCAGGTGGT 60.108 55.0 13.26 0.0 39.68 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1293 4855 0.322816 AGAGTAACCGCGGGTCAGTA 60.323 55.000 31.76 4.12 33.12 2.74 R
1519 5087 0.472471 ACCACCTTGTCGATGTTGGT 59.528 50.000 0.00 0.00 0.00 3.67 R
2517 6096 1.480137 AGGACTCAGACATAGCAGTGC 59.520 52.381 7.13 7.13 0.00 4.40 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.722700 GTCAGGCACCACCGGCAT 62.723 66.667 0.00 0.00 46.52 4.40
20 21 4.720902 TCAGGCACCACCGGCATG 62.721 66.667 0.00 0.00 46.52 4.06
38 39 2.513204 CCGTGATGGCTGCAGGAG 60.513 66.667 17.12 0.00 0.00 3.69
39 40 2.513204 CGTGATGGCTGCAGGAGG 60.513 66.667 17.12 0.00 0.00 4.30
40 41 2.993008 GTGATGGCTGCAGGAGGA 59.007 61.111 17.12 0.00 0.00 3.71
41 42 1.451028 GTGATGGCTGCAGGAGGAC 60.451 63.158 17.12 0.00 0.00 3.85
42 43 1.614525 TGATGGCTGCAGGAGGACT 60.615 57.895 17.12 0.00 0.00 3.85
43 44 0.325577 TGATGGCTGCAGGAGGACTA 60.326 55.000 17.12 0.00 0.00 2.59
44 45 0.105778 GATGGCTGCAGGAGGACTAC 59.894 60.000 17.12 0.00 0.00 2.73
45 46 0.618680 ATGGCTGCAGGAGGACTACA 60.619 55.000 17.12 0.00 0.00 2.74
46 47 1.219393 GGCTGCAGGAGGACTACAC 59.781 63.158 17.12 0.00 0.00 2.90
47 48 1.153745 GCTGCAGGAGGACTACACG 60.154 63.158 17.12 0.00 0.00 4.49
48 49 1.595993 GCTGCAGGAGGACTACACGA 61.596 60.000 17.12 0.00 0.00 4.35
49 50 1.107114 CTGCAGGAGGACTACACGAT 58.893 55.000 5.57 0.00 0.00 3.73
50 51 1.478510 CTGCAGGAGGACTACACGATT 59.521 52.381 5.57 0.00 0.00 3.34
51 52 1.204704 TGCAGGAGGACTACACGATTG 59.795 52.381 0.00 0.00 0.00 2.67
52 53 1.927895 CAGGAGGACTACACGATTGC 58.072 55.000 0.00 0.00 0.00 3.56
53 54 0.824759 AGGAGGACTACACGATTGCC 59.175 55.000 0.00 0.00 0.00 4.52
54 55 0.179081 GGAGGACTACACGATTGCCC 60.179 60.000 0.00 0.00 0.00 5.36
55 56 0.824759 GAGGACTACACGATTGCCCT 59.175 55.000 0.00 0.00 0.00 5.19
56 57 0.824759 AGGACTACACGATTGCCCTC 59.175 55.000 0.00 0.00 0.00 4.30
57 58 0.824759 GGACTACACGATTGCCCTCT 59.175 55.000 0.00 0.00 0.00 3.69
58 59 1.202428 GGACTACACGATTGCCCTCTC 60.202 57.143 0.00 0.00 0.00 3.20
59 60 0.824759 ACTACACGATTGCCCTCTCC 59.175 55.000 0.00 0.00 0.00 3.71
60 61 0.105039 CTACACGATTGCCCTCTCCC 59.895 60.000 0.00 0.00 0.00 4.30
61 62 0.325296 TACACGATTGCCCTCTCCCT 60.325 55.000 0.00 0.00 0.00 4.20
62 63 1.201429 ACACGATTGCCCTCTCCCTT 61.201 55.000 0.00 0.00 0.00 3.95
63 64 0.745845 CACGATTGCCCTCTCCCTTG 60.746 60.000 0.00 0.00 0.00 3.61
64 65 1.201429 ACGATTGCCCTCTCCCTTGT 61.201 55.000 0.00 0.00 0.00 3.16
65 66 0.462759 CGATTGCCCTCTCCCTTGTC 60.463 60.000 0.00 0.00 0.00 3.18
66 67 0.106967 GATTGCCCTCTCCCTTGTCC 60.107 60.000 0.00 0.00 0.00 4.02
67 68 1.915078 ATTGCCCTCTCCCTTGTCCG 61.915 60.000 0.00 0.00 0.00 4.79
68 69 4.475135 GCCCTCTCCCTTGTCCGC 62.475 72.222 0.00 0.00 0.00 5.54
69 70 2.685380 CCCTCTCCCTTGTCCGCT 60.685 66.667 0.00 0.00 0.00 5.52
70 71 1.381327 CCCTCTCCCTTGTCCGCTA 60.381 63.158 0.00 0.00 0.00 4.26
71 72 1.677637 CCCTCTCCCTTGTCCGCTAC 61.678 65.000 0.00 0.00 0.00 3.58
72 73 1.677637 CCTCTCCCTTGTCCGCTACC 61.678 65.000 0.00 0.00 0.00 3.18
73 74 0.684805 CTCTCCCTTGTCCGCTACCT 60.685 60.000 0.00 0.00 0.00 3.08
74 75 0.683504 TCTCCCTTGTCCGCTACCTC 60.684 60.000 0.00 0.00 0.00 3.85
75 76 1.677637 CTCCCTTGTCCGCTACCTCC 61.678 65.000 0.00 0.00 0.00 4.30
76 77 2.732619 CCCTTGTCCGCTACCTCCC 61.733 68.421 0.00 0.00 0.00 4.30
77 78 2.494918 CTTGTCCGCTACCTCCCG 59.505 66.667 0.00 0.00 0.00 5.14
78 79 3.718210 CTTGTCCGCTACCTCCCGC 62.718 68.421 0.00 0.00 0.00 6.13
109 110 4.530857 CGCCTTCGATTCCGGCCT 62.531 66.667 0.00 0.00 40.70 5.19
110 111 2.897350 GCCTTCGATTCCGGCCTG 60.897 66.667 0.00 0.00 37.86 4.85
111 112 2.897350 CCTTCGATTCCGGCCTGC 60.897 66.667 0.00 0.00 36.24 4.85
112 113 3.264897 CTTCGATTCCGGCCTGCG 61.265 66.667 0.00 0.00 36.24 5.18
140 141 3.702048 GCCGGCAGGTGGACACTA 61.702 66.667 24.80 0.00 40.50 2.74
141 142 3.065306 CCGGCAGGTGGACACTAA 58.935 61.111 2.13 0.00 0.00 2.24
142 143 1.373435 CCGGCAGGTGGACACTAAA 59.627 57.895 2.13 0.00 0.00 1.85
143 144 0.953960 CCGGCAGGTGGACACTAAAC 60.954 60.000 2.13 0.00 0.00 2.01
144 145 0.953960 CGGCAGGTGGACACTAAACC 60.954 60.000 2.13 0.00 0.00 3.27
145 146 0.608308 GGCAGGTGGACACTAAACCC 60.608 60.000 2.13 0.00 34.29 4.11
146 147 0.109723 GCAGGTGGACACTAAACCCA 59.890 55.000 2.13 0.00 34.29 4.51
147 148 1.271926 GCAGGTGGACACTAAACCCAT 60.272 52.381 2.13 0.00 34.29 4.00
148 149 2.711542 CAGGTGGACACTAAACCCATC 58.288 52.381 2.13 0.00 34.29 3.51
149 150 2.039746 CAGGTGGACACTAAACCCATCA 59.960 50.000 2.13 0.00 33.61 3.07
150 151 2.039879 AGGTGGACACTAAACCCATCAC 59.960 50.000 2.13 0.00 33.61 3.06
151 152 2.039879 GGTGGACACTAAACCCATCACT 59.960 50.000 2.13 0.00 31.56 3.41
152 153 3.074412 GTGGACACTAAACCCATCACTG 58.926 50.000 0.00 0.00 31.94 3.66
153 154 2.084546 GGACACTAAACCCATCACTGC 58.915 52.381 0.00 0.00 0.00 4.40
154 155 2.084546 GACACTAAACCCATCACTGCC 58.915 52.381 0.00 0.00 0.00 4.85
155 156 1.271926 ACACTAAACCCATCACTGCCC 60.272 52.381 0.00 0.00 0.00 5.36
156 157 1.004745 CACTAAACCCATCACTGCCCT 59.995 52.381 0.00 0.00 0.00 5.19
157 158 1.710809 ACTAAACCCATCACTGCCCTT 59.289 47.619 0.00 0.00 0.00 3.95
158 159 2.290960 ACTAAACCCATCACTGCCCTTC 60.291 50.000 0.00 0.00 0.00 3.46
159 160 0.779997 AAACCCATCACTGCCCTTCT 59.220 50.000 0.00 0.00 0.00 2.85
160 161 1.668826 AACCCATCACTGCCCTTCTA 58.331 50.000 0.00 0.00 0.00 2.10
161 162 1.207791 ACCCATCACTGCCCTTCTAG 58.792 55.000 0.00 0.00 0.00 2.43
162 163 1.273838 ACCCATCACTGCCCTTCTAGA 60.274 52.381 0.00 0.00 0.00 2.43
163 164 1.415659 CCCATCACTGCCCTTCTAGAG 59.584 57.143 0.00 0.00 0.00 2.43
164 165 2.114616 CCATCACTGCCCTTCTAGAGT 58.885 52.381 0.00 0.00 0.00 3.24
165 166 2.158986 CCATCACTGCCCTTCTAGAGTG 60.159 54.545 0.00 0.00 37.72 3.51
166 167 0.898320 TCACTGCCCTTCTAGAGTGC 59.102 55.000 0.00 3.63 36.55 4.40
167 168 0.459237 CACTGCCCTTCTAGAGTGCG 60.459 60.000 0.00 0.00 30.14 5.34
168 169 0.612174 ACTGCCCTTCTAGAGTGCGA 60.612 55.000 0.00 0.00 0.00 5.10
169 170 0.102120 CTGCCCTTCTAGAGTGCGAG 59.898 60.000 0.00 0.00 0.00 5.03
170 171 0.323451 TGCCCTTCTAGAGTGCGAGA 60.323 55.000 0.00 0.00 0.00 4.04
171 172 0.818296 GCCCTTCTAGAGTGCGAGAA 59.182 55.000 0.00 0.00 35.03 2.87
172 173 1.202359 GCCCTTCTAGAGTGCGAGAAG 60.202 57.143 8.27 8.27 46.90 2.85
176 177 2.045561 TCTAGAGTGCGAGAAGAGGG 57.954 55.000 0.00 0.00 0.00 4.30
177 178 1.028905 CTAGAGTGCGAGAAGAGGGG 58.971 60.000 0.00 0.00 0.00 4.79
178 179 0.395862 TAGAGTGCGAGAAGAGGGGG 60.396 60.000 0.00 0.00 0.00 5.40
179 180 3.378399 GAGTGCGAGAAGAGGGGGC 62.378 68.421 0.00 0.00 0.00 5.80
180 181 4.821589 GTGCGAGAAGAGGGGGCG 62.822 72.222 0.00 0.00 0.00 6.13
183 184 3.532155 CGAGAAGAGGGGGCGGAG 61.532 72.222 0.00 0.00 0.00 4.63
184 185 3.157949 GAGAAGAGGGGGCGGAGG 61.158 72.222 0.00 0.00 0.00 4.30
185 186 3.986116 GAGAAGAGGGGGCGGAGGT 62.986 68.421 0.00 0.00 0.00 3.85
186 187 3.009714 GAAGAGGGGGCGGAGGTT 61.010 66.667 0.00 0.00 0.00 3.50
187 188 3.330720 AAGAGGGGGCGGAGGTTG 61.331 66.667 0.00 0.00 0.00 3.77
196 197 4.760047 CGGAGGTTGCTGGACGGG 62.760 72.222 0.00 0.00 0.00 5.28
197 198 3.637273 GGAGGTTGCTGGACGGGT 61.637 66.667 0.00 0.00 0.00 5.28
198 199 2.358737 GAGGTTGCTGGACGGGTG 60.359 66.667 0.00 0.00 0.00 4.61
199 200 3.901797 GAGGTTGCTGGACGGGTGG 62.902 68.421 0.00 0.00 0.00 4.61
201 202 3.948719 GTTGCTGGACGGGTGGGA 61.949 66.667 0.00 0.00 0.00 4.37
202 203 3.172106 TTGCTGGACGGGTGGGAA 61.172 61.111 0.00 0.00 0.00 3.97
203 204 3.190738 TTGCTGGACGGGTGGGAAG 62.191 63.158 0.00 0.00 0.00 3.46
204 205 4.410400 GCTGGACGGGTGGGAAGG 62.410 72.222 0.00 0.00 0.00 3.46
205 206 3.717294 CTGGACGGGTGGGAAGGG 61.717 72.222 0.00 0.00 0.00 3.95
211 212 4.678743 GGGTGGGAAGGGGCACAC 62.679 72.222 0.00 0.00 41.44 3.82
212 213 3.580319 GGTGGGAAGGGGCACACT 61.580 66.667 0.00 0.00 41.86 3.55
213 214 2.034221 GTGGGAAGGGGCACACTC 59.966 66.667 0.00 0.00 39.10 3.51
214 215 2.121963 TGGGAAGGGGCACACTCT 60.122 61.111 0.00 0.00 0.00 3.24
215 216 2.352805 GGGAAGGGGCACACTCTG 59.647 66.667 0.00 0.00 0.00 3.35
216 217 2.352805 GGAAGGGGCACACTCTGG 59.647 66.667 0.00 0.00 0.00 3.86
217 218 2.360475 GAAGGGGCACACTCTGGC 60.360 66.667 0.00 0.00 45.01 4.85
218 219 4.335647 AAGGGGCACACTCTGGCG 62.336 66.667 0.00 0.00 46.76 5.69
254 255 2.673341 ACGAGAGTCGAGGCAGCA 60.673 61.111 2.82 0.00 44.19 4.41
255 256 2.101965 CGAGAGTCGAGGCAGCAG 59.898 66.667 0.00 0.00 43.74 4.24
256 257 2.402572 CGAGAGTCGAGGCAGCAGA 61.403 63.158 0.00 0.00 43.74 4.26
257 258 1.723608 CGAGAGTCGAGGCAGCAGAT 61.724 60.000 0.00 0.00 43.74 2.90
258 259 1.313772 GAGAGTCGAGGCAGCAGATA 58.686 55.000 0.00 0.00 0.00 1.98
259 260 1.001815 GAGAGTCGAGGCAGCAGATAC 60.002 57.143 0.00 0.00 0.00 2.24
260 261 0.317436 GAGTCGAGGCAGCAGATACG 60.317 60.000 0.00 0.00 0.00 3.06
261 262 1.299468 GTCGAGGCAGCAGATACGG 60.299 63.158 0.00 0.00 0.00 4.02
262 263 1.453197 TCGAGGCAGCAGATACGGA 60.453 57.895 0.00 0.00 0.00 4.69
263 264 1.035385 TCGAGGCAGCAGATACGGAA 61.035 55.000 0.00 0.00 0.00 4.30
264 265 0.032678 CGAGGCAGCAGATACGGAAT 59.967 55.000 0.00 0.00 0.00 3.01
265 266 1.539065 CGAGGCAGCAGATACGGAATT 60.539 52.381 0.00 0.00 0.00 2.17
266 267 1.869767 GAGGCAGCAGATACGGAATTG 59.130 52.381 0.00 0.00 0.00 2.32
267 268 0.308993 GGCAGCAGATACGGAATTGC 59.691 55.000 0.00 0.00 36.83 3.56
268 269 0.308993 GCAGCAGATACGGAATTGCC 59.691 55.000 3.34 0.00 37.26 4.52
277 278 2.885113 GGAATTGCCGCCCTTGTC 59.115 61.111 0.00 0.00 0.00 3.18
278 279 2.710902 GGAATTGCCGCCCTTGTCC 61.711 63.158 0.00 0.00 0.00 4.02
279 280 1.976474 GAATTGCCGCCCTTGTCCA 60.976 57.895 0.00 0.00 0.00 4.02
280 281 2.212900 GAATTGCCGCCCTTGTCCAC 62.213 60.000 0.00 0.00 0.00 4.02
281 282 4.966787 TTGCCGCCCTTGTCCACC 62.967 66.667 0.00 0.00 0.00 4.61
321 322 4.821589 CGGAGGGCAAGCTCGTCC 62.822 72.222 0.00 0.00 36.24 4.79
322 323 3.394836 GGAGGGCAAGCTCGTCCT 61.395 66.667 0.00 0.00 46.18 3.85
324 325 3.764466 AGGGCAAGCTCGTCCTCG 61.764 66.667 0.00 0.00 35.56 4.63
325 326 4.070552 GGGCAAGCTCGTCCTCGT 62.071 66.667 0.00 0.00 38.33 4.18
326 327 2.507324 GGCAAGCTCGTCCTCGTC 60.507 66.667 0.00 0.00 38.33 4.20
327 328 2.876645 GCAAGCTCGTCCTCGTCG 60.877 66.667 0.00 0.00 38.33 5.12
328 329 2.876645 CAAGCTCGTCCTCGTCGC 60.877 66.667 0.00 0.00 38.33 5.19
329 330 4.117661 AAGCTCGTCCTCGTCGCC 62.118 66.667 0.00 0.00 38.33 5.54
332 333 3.574445 CTCGTCCTCGTCGCCGAT 61.574 66.667 0.00 0.00 43.27 4.18
333 334 3.791928 CTCGTCCTCGTCGCCGATG 62.792 68.421 0.00 0.00 43.27 3.84
337 338 4.933064 CCTCGTCGCCGATGCCTC 62.933 72.222 0.34 0.00 43.27 4.70
357 358 3.073101 GGGGGAACGCGTCCTAGT 61.073 66.667 14.44 0.00 46.92 2.57
358 359 2.493501 GGGGAACGCGTCCTAGTC 59.506 66.667 14.44 5.62 46.92 2.59
359 360 2.345760 GGGGAACGCGTCCTAGTCA 61.346 63.158 14.44 0.00 46.92 3.41
360 361 1.673808 GGGGAACGCGTCCTAGTCAT 61.674 60.000 14.44 0.00 46.92 3.06
361 362 0.248949 GGGAACGCGTCCTAGTCATC 60.249 60.000 14.44 2.96 46.92 2.92
362 363 0.591741 GGAACGCGTCCTAGTCATCG 60.592 60.000 14.44 0.00 43.98 3.84
363 364 0.098376 GAACGCGTCCTAGTCATCGT 59.902 55.000 14.44 0.00 0.00 3.73
364 365 0.098376 AACGCGTCCTAGTCATCGTC 59.902 55.000 14.44 0.00 0.00 4.20
365 366 1.022982 ACGCGTCCTAGTCATCGTCA 61.023 55.000 5.58 0.00 0.00 4.35
366 367 0.316278 CGCGTCCTAGTCATCGTCAG 60.316 60.000 0.00 0.00 0.00 3.51
367 368 1.015109 GCGTCCTAGTCATCGTCAGA 58.985 55.000 0.00 0.00 0.00 3.27
368 369 1.268133 GCGTCCTAGTCATCGTCAGAC 60.268 57.143 0.00 0.00 36.26 3.51
369 370 1.331138 CGTCCTAGTCATCGTCAGACC 59.669 57.143 0.00 0.00 36.68 3.85
370 371 2.645802 GTCCTAGTCATCGTCAGACCT 58.354 52.381 0.00 0.00 36.68 3.85
371 372 3.740452 CGTCCTAGTCATCGTCAGACCTA 60.740 52.174 0.00 0.00 36.68 3.08
372 373 4.391155 GTCCTAGTCATCGTCAGACCTAT 58.609 47.826 0.00 0.00 36.68 2.57
373 374 4.822896 GTCCTAGTCATCGTCAGACCTATT 59.177 45.833 0.00 0.00 36.68 1.73
374 375 5.996513 GTCCTAGTCATCGTCAGACCTATTA 59.003 44.000 0.00 0.00 36.68 0.98
375 376 6.148150 GTCCTAGTCATCGTCAGACCTATTAG 59.852 46.154 0.00 0.00 36.68 1.73
376 377 6.042897 TCCTAGTCATCGTCAGACCTATTAGA 59.957 42.308 0.00 0.00 36.68 2.10
377 378 6.370442 CCTAGTCATCGTCAGACCTATTAGAG 59.630 46.154 0.00 0.00 36.68 2.43
388 389 2.395619 CCTATTAGAGGGGTTGTCGGT 58.604 52.381 0.00 0.00 42.39 4.69
389 390 2.102588 CCTATTAGAGGGGTTGTCGGTG 59.897 54.545 0.00 0.00 42.39 4.94
390 391 0.252197 ATTAGAGGGGTTGTCGGTGC 59.748 55.000 0.00 0.00 0.00 5.01
391 392 0.834687 TTAGAGGGGTTGTCGGTGCT 60.835 55.000 0.00 0.00 0.00 4.40
392 393 1.541310 TAGAGGGGTTGTCGGTGCTG 61.541 60.000 0.00 0.00 0.00 4.41
437 438 2.776665 TGGGAGAAAGGGAGGATAAGG 58.223 52.381 0.00 0.00 0.00 2.69
438 439 2.047296 TGGGAGAAAGGGAGGATAAGGT 59.953 50.000 0.00 0.00 0.00 3.50
500 501 2.572290 GATAGGGATTTTGTGGGGACG 58.428 52.381 0.00 0.00 0.00 4.79
532 533 4.052518 GGGCCAGGCTGATGTGGT 62.053 66.667 17.94 0.00 36.10 4.16
548 549 0.478072 TGGTGAACATGAGGGTGCTT 59.522 50.000 0.00 0.00 0.00 3.91
553 554 2.229792 GAACATGAGGGTGCTTGACAA 58.770 47.619 0.00 0.00 0.00 3.18
568 569 3.755112 TGACAACCCATACGTTTGAGA 57.245 42.857 7.64 0.00 0.00 3.27
591 592 0.108138 GTATGAGCGCTTCAGGTGGT 60.108 55.000 13.26 0.00 39.68 4.16
595 596 2.357034 GCGCTTCAGGTGGTTCGA 60.357 61.111 0.00 0.00 0.00 3.71
668 670 1.004440 GGCCCGGATGTAGATGCTC 60.004 63.158 0.73 0.00 0.00 4.26
682 684 9.458374 GATGTAGATGCTCTAAGAAAGTACTTC 57.542 37.037 8.95 2.91 29.58 3.01
798 815 5.246307 CGACAAAAAGAAGGGAGTCCTATT 58.754 41.667 9.58 4.43 44.07 1.73
799 816 5.705905 CGACAAAAAGAAGGGAGTCCTATTT 59.294 40.000 9.58 1.42 44.07 1.40
809 826 3.259902 GGAGTCCTATTTGTTGTCGACC 58.740 50.000 14.12 0.00 0.00 4.79
813 830 0.368907 CTATTTGTTGTCGACCGCCG 59.631 55.000 14.12 0.00 40.25 6.46
835 852 0.379316 AAAACGAACGAAAAGCGGCT 59.621 45.000 0.00 0.00 46.49 5.52
838 855 1.154654 CGAACGAAAAGCGGCTGAC 60.155 57.895 1.81 0.00 46.49 3.51
896 4375 8.797266 AATTATTGGACTTTCGTTTTTCTCAC 57.203 30.769 0.00 0.00 0.00 3.51
913 4392 1.900016 ACCAGACGACGCACACCTA 60.900 57.895 0.00 0.00 0.00 3.08
914 4393 1.287815 CCAGACGACGCACACCTAA 59.712 57.895 0.00 0.00 0.00 2.69
1040 4566 0.690411 ATCCTCACCCAGCTCCTCTG 60.690 60.000 0.00 0.00 42.49 3.35
1154 4716 1.749638 AGGACTACCTCGTCGCCAG 60.750 63.158 0.00 0.00 44.13 4.85
1470 5035 2.419198 CTGCCCCTCTTCGGATCG 59.581 66.667 0.00 0.00 33.16 3.69
1519 5087 3.165875 CAGAACTCCTACCTCCTGTCAA 58.834 50.000 0.00 0.00 0.00 3.18
1681 5256 1.069668 GTACCGAAAGTCTGGGTGTGT 59.930 52.381 1.71 0.00 35.28 3.72
2161 5736 2.408271 TTTCAGATTCGCATGAGCCT 57.592 45.000 0.00 0.00 37.52 4.58
2201 5776 1.333619 GGTAACTGTGTGCTGGTTGTG 59.666 52.381 0.00 0.00 0.00 3.33
2309 5885 7.988737 TGTTTATGCCATCATTCAGTAGAAAG 58.011 34.615 0.00 0.00 37.29 2.62
2332 5909 5.011635 AGGAAACCATGGTTTGTTATGAACC 59.988 40.000 40.55 30.94 46.80 3.62
2353 5930 8.576442 TGAACCTTTTCATTCCTGAATACTTTC 58.424 33.333 0.00 0.00 40.95 2.62
2358 5935 6.387192 TTCATTCCTGAATACTTTCCCTGA 57.613 37.500 0.00 0.00 36.46 3.86
2359 5936 6.387192 TCATTCCTGAATACTTTCCCTGAA 57.613 37.500 0.00 0.00 0.00 3.02
2360 5937 6.973642 TCATTCCTGAATACTTTCCCTGAAT 58.026 36.000 0.00 0.00 0.00 2.57
2361 5938 7.056635 TCATTCCTGAATACTTTCCCTGAATC 58.943 38.462 0.00 0.00 0.00 2.52
2362 5939 5.373812 TCCTGAATACTTTCCCTGAATCC 57.626 43.478 0.00 0.00 0.00 3.01
2363 5940 5.039645 TCCTGAATACTTTCCCTGAATCCT 58.960 41.667 0.00 0.00 0.00 3.24
2364 5941 5.104360 TCCTGAATACTTTCCCTGAATCCTG 60.104 44.000 0.00 0.00 0.00 3.86
2365 5942 5.104360 CCTGAATACTTTCCCTGAATCCTGA 60.104 44.000 0.00 0.00 0.00 3.86
2366 5943 6.410157 CCTGAATACTTTCCCTGAATCCTGAT 60.410 42.308 0.00 0.00 0.00 2.90
2367 5944 7.202130 CCTGAATACTTTCCCTGAATCCTGATA 60.202 40.741 0.00 0.00 0.00 2.15
2368 5945 8.280258 TGAATACTTTCCCTGAATCCTGATAT 57.720 34.615 0.00 0.00 0.00 1.63
2369 5946 8.159447 TGAATACTTTCCCTGAATCCTGATATG 58.841 37.037 0.00 0.00 0.00 1.78
2370 5947 5.983333 ACTTTCCCTGAATCCTGATATGT 57.017 39.130 0.00 0.00 0.00 2.29
2371 5948 6.332976 ACTTTCCCTGAATCCTGATATGTT 57.667 37.500 0.00 0.00 0.00 2.71
2412 5991 2.697751 TCCCTTGTTTTGGAACACATGG 59.302 45.455 0.00 4.39 45.01 3.66
2420 5999 3.524095 TTGGAACACATGGATTGGAGT 57.476 42.857 0.00 0.00 39.29 3.85
2421 6000 2.794103 TGGAACACATGGATTGGAGTG 58.206 47.619 0.00 0.00 37.95 3.51
2422 6001 2.094675 GGAACACATGGATTGGAGTGG 58.905 52.381 0.00 0.00 36.35 4.00
2423 6002 2.290896 GGAACACATGGATTGGAGTGGA 60.291 50.000 0.00 0.00 36.35 4.02
2424 6003 2.795231 ACACATGGATTGGAGTGGAG 57.205 50.000 0.00 0.00 36.35 3.86
2492 6071 3.417069 TGGTTGTTGGTATCACCTGAG 57.583 47.619 0.00 0.00 39.58 3.35
2523 6102 6.624352 TTAATTAGATTCATGAGGCACTGC 57.376 37.500 0.00 0.00 41.55 4.40
2597 6176 9.459640 GAATTTGTTCATCCTCATGTCATATTG 57.540 33.333 0.00 0.00 0.00 1.90
2601 6180 9.498176 TTGTTCATCCTCATGTCATATTGATAG 57.502 33.333 0.00 0.00 0.00 2.08
2640 6226 5.814764 GCAGATGCATTGGAATATAGGAG 57.185 43.478 0.00 0.00 41.59 3.69
2641 6227 5.251764 GCAGATGCATTGGAATATAGGAGT 58.748 41.667 0.00 0.00 41.59 3.85
2642 6228 6.409704 GCAGATGCATTGGAATATAGGAGTA 58.590 40.000 0.00 0.00 41.59 2.59
2671 6257 7.122799 TGACTGTGAGTAGTATATTTGCACTCT 59.877 37.037 0.00 0.00 37.20 3.24
2766 7353 8.046294 TCTAATCTATCTATCCGTGAAAGAGC 57.954 38.462 0.00 0.00 0.00 4.09
2805 7392 0.538516 TCGTGGGGAACAATGTTGGG 60.539 55.000 2.20 0.00 0.00 4.12
2813 7400 1.866601 GAACAATGTTGGGCTTGTTGC 59.133 47.619 2.20 0.00 43.61 4.17
2838 7425 1.677576 CACAACATGTTGACCACTGCT 59.322 47.619 38.30 15.66 42.93 4.24
2846 7433 2.158769 TGTTGACCACTGCTGAGAATGT 60.159 45.455 0.00 0.00 0.00 2.71
2900 7487 4.555348 AAAAACTACCACAATTCGCGAA 57.445 36.364 25.66 25.66 0.00 4.70
2901 7488 4.555348 AAAACTACCACAATTCGCGAAA 57.445 36.364 27.23 9.62 0.00 3.46
2902 7489 3.531262 AACTACCACAATTCGCGAAAC 57.469 42.857 27.23 0.00 0.00 2.78
2903 7490 1.802365 ACTACCACAATTCGCGAAACC 59.198 47.619 27.23 0.00 0.00 3.27
2904 7491 0.791422 TACCACAATTCGCGAAACCG 59.209 50.000 27.23 18.53 0.00 4.44
2905 7492 1.161563 ACCACAATTCGCGAAACCGT 61.162 50.000 27.23 19.19 0.00 4.83
2906 7493 0.724453 CCACAATTCGCGAAACCGTG 60.724 55.000 27.23 27.67 38.76 4.94
2907 7494 0.041663 CACAATTCGCGAAACCGTGT 60.042 50.000 27.23 22.16 38.56 4.49
2908 7495 0.233848 ACAATTCGCGAAACCGTGTC 59.766 50.000 27.23 0.00 38.56 3.67
2909 7496 0.511221 CAATTCGCGAAACCGTGTCT 59.489 50.000 27.23 3.17 38.56 3.41
2910 7497 1.722464 CAATTCGCGAAACCGTGTCTA 59.278 47.619 27.23 0.00 38.56 2.59
2911 7498 2.068837 ATTCGCGAAACCGTGTCTAA 57.931 45.000 27.23 0.00 38.56 2.10
2912 7499 1.850377 TTCGCGAAACCGTGTCTAAA 58.150 45.000 21.14 0.00 38.56 1.85
2913 7500 1.850377 TCGCGAAACCGTGTCTAAAA 58.150 45.000 6.20 0.00 38.56 1.52
2914 7501 2.200067 TCGCGAAACCGTGTCTAAAAA 58.800 42.857 6.20 0.00 38.56 1.94
2915 7502 2.033832 TCGCGAAACCGTGTCTAAAAAC 60.034 45.455 6.20 0.00 38.56 2.43
2916 7503 2.033492 CGCGAAACCGTGTCTAAAAACT 60.033 45.455 0.00 0.00 33.32 2.66
2917 7504 3.182173 CGCGAAACCGTGTCTAAAAACTA 59.818 43.478 0.00 0.00 33.32 2.24
2918 7505 4.448891 GCGAAACCGTGTCTAAAAACTAC 58.551 43.478 0.00 0.00 0.00 2.73
2919 7506 4.609113 GCGAAACCGTGTCTAAAAACTACC 60.609 45.833 0.00 0.00 0.00 3.18
2920 7507 4.507388 CGAAACCGTGTCTAAAAACTACCA 59.493 41.667 0.00 0.00 0.00 3.25
2921 7508 5.556947 CGAAACCGTGTCTAAAAACTACCAC 60.557 44.000 0.00 0.00 0.00 4.16
2922 7509 4.677673 ACCGTGTCTAAAAACTACCACT 57.322 40.909 0.00 0.00 0.00 4.00
2923 7510 5.027293 ACCGTGTCTAAAAACTACCACTT 57.973 39.130 0.00 0.00 0.00 3.16
2924 7511 5.430886 ACCGTGTCTAAAAACTACCACTTT 58.569 37.500 0.00 0.00 0.00 2.66
2925 7512 6.581712 ACCGTGTCTAAAAACTACCACTTTA 58.418 36.000 0.00 0.00 0.00 1.85
2926 7513 6.479990 ACCGTGTCTAAAAACTACCACTTTAC 59.520 38.462 0.00 0.00 0.00 2.01
2927 7514 6.479660 CCGTGTCTAAAAACTACCACTTTACA 59.520 38.462 0.00 0.00 0.00 2.41
2928 7515 7.011295 CCGTGTCTAAAAACTACCACTTTACAA 59.989 37.037 0.00 0.00 0.00 2.41
2929 7516 8.389603 CGTGTCTAAAAACTACCACTTTACAAA 58.610 33.333 0.00 0.00 0.00 2.83
2936 7523 7.764695 AAACTACCACTTTACAAATTTGTGC 57.235 32.000 29.72 0.00 42.31 4.57
2937 7524 6.709018 ACTACCACTTTACAAATTTGTGCT 57.291 33.333 29.72 9.30 42.31 4.40
2938 7525 6.503524 ACTACCACTTTACAAATTTGTGCTG 58.496 36.000 29.72 20.70 42.31 4.41
2939 7526 5.590530 ACCACTTTACAAATTTGTGCTGA 57.409 34.783 29.72 10.45 42.31 4.26
2940 7527 5.971763 ACCACTTTACAAATTTGTGCTGAA 58.028 33.333 29.72 15.56 42.31 3.02
2941 7528 6.402222 ACCACTTTACAAATTTGTGCTGAAA 58.598 32.000 29.72 20.82 42.31 2.69
2942 7529 6.876257 ACCACTTTACAAATTTGTGCTGAAAA 59.124 30.769 29.72 20.51 42.31 2.29
2943 7530 7.148490 ACCACTTTACAAATTTGTGCTGAAAAC 60.148 33.333 29.72 0.00 42.31 2.43
2944 7531 7.064490 CCACTTTACAAATTTGTGCTGAAAACT 59.936 33.333 29.72 10.69 42.31 2.66
2945 7532 9.081997 CACTTTACAAATTTGTGCTGAAAACTA 57.918 29.630 29.72 6.55 42.31 2.24
2946 7533 9.083080 ACTTTACAAATTTGTGCTGAAAACTAC 57.917 29.630 29.72 0.00 42.31 2.73
2947 7534 7.995463 TTACAAATTTGTGCTGAAAACTACC 57.005 32.000 29.72 0.00 42.31 3.18
2948 7535 5.971763 ACAAATTTGTGCTGAAAACTACCA 58.028 33.333 22.71 0.00 40.49 3.25
2949 7536 5.810074 ACAAATTTGTGCTGAAAACTACCAC 59.190 36.000 22.71 0.00 40.49 4.16
2950 7537 5.852282 AATTTGTGCTGAAAACTACCACT 57.148 34.783 0.00 0.00 0.00 4.00
2951 7538 5.852282 ATTTGTGCTGAAAACTACCACTT 57.148 34.783 0.00 0.00 0.00 3.16
2952 7539 5.652994 TTTGTGCTGAAAACTACCACTTT 57.347 34.783 0.00 0.00 0.00 2.66
2953 7540 5.652994 TTGTGCTGAAAACTACCACTTTT 57.347 34.783 0.00 0.00 0.00 2.27
2954 7541 5.652994 TGTGCTGAAAACTACCACTTTTT 57.347 34.783 0.00 0.00 0.00 1.94
2955 7542 5.646606 TGTGCTGAAAACTACCACTTTTTC 58.353 37.500 0.00 0.00 40.61 2.29
2956 7543 5.184096 TGTGCTGAAAACTACCACTTTTTCA 59.816 36.000 8.70 8.70 45.20 2.69
2957 7544 5.515270 GTGCTGAAAACTACCACTTTTTCAC 59.485 40.000 5.59 4.72 43.48 3.18
2958 7545 5.417580 TGCTGAAAACTACCACTTTTTCACT 59.582 36.000 5.59 0.00 43.48 3.41
2959 7546 6.071616 TGCTGAAAACTACCACTTTTTCACTT 60.072 34.615 5.59 0.00 43.48 3.16
2960 7547 6.811665 GCTGAAAACTACCACTTTTTCACTTT 59.188 34.615 5.59 0.00 43.48 2.66
2961 7548 7.971722 GCTGAAAACTACCACTTTTTCACTTTA 59.028 33.333 5.59 0.00 43.48 1.85
2962 7549 9.285770 CTGAAAACTACCACTTTTTCACTTTAC 57.714 33.333 5.59 0.00 43.48 2.01
2963 7550 8.794553 TGAAAACTACCACTTTTTCACTTTACA 58.205 29.630 5.59 0.00 43.48 2.41
2964 7551 9.628746 GAAAACTACCACTTTTTCACTTTACAA 57.371 29.630 0.00 0.00 40.15 2.41
2965 7552 9.984190 AAAACTACCACTTTTTCACTTTACAAA 57.016 25.926 0.00 0.00 0.00 2.83
2966 7553 9.984190 AAACTACCACTTTTTCACTTTACAAAA 57.016 25.926 0.00 0.00 0.00 2.44
2967 7554 9.984190 AACTACCACTTTTTCACTTTACAAAAA 57.016 25.926 0.00 0.00 32.05 1.94
2990 7577 3.069079 ACTAGTGAGTGACTTAGCCGA 57.931 47.619 0.00 0.00 35.96 5.54
2991 7578 3.418995 ACTAGTGAGTGACTTAGCCGAA 58.581 45.455 0.00 0.00 35.96 4.30
2992 7579 3.825014 ACTAGTGAGTGACTTAGCCGAAA 59.175 43.478 0.00 0.00 35.96 3.46
2993 7580 3.963428 AGTGAGTGACTTAGCCGAAAT 57.037 42.857 0.00 0.00 0.00 2.17
2994 7581 4.273148 AGTGAGTGACTTAGCCGAAATT 57.727 40.909 0.00 0.00 0.00 1.82
2995 7582 5.401531 AGTGAGTGACTTAGCCGAAATTA 57.598 39.130 0.00 0.00 0.00 1.40
2996 7583 5.978814 AGTGAGTGACTTAGCCGAAATTAT 58.021 37.500 0.00 0.00 0.00 1.28
2997 7584 7.108841 AGTGAGTGACTTAGCCGAAATTATA 57.891 36.000 0.00 0.00 0.00 0.98
2998 7585 6.979238 AGTGAGTGACTTAGCCGAAATTATAC 59.021 38.462 0.00 0.00 0.00 1.47
2999 7586 6.979238 GTGAGTGACTTAGCCGAAATTATACT 59.021 38.462 0.00 0.00 0.00 2.12
3000 7587 7.167801 GTGAGTGACTTAGCCGAAATTATACTC 59.832 40.741 0.00 0.00 0.00 2.59
3001 7588 6.207213 AGTGACTTAGCCGAAATTATACTCG 58.793 40.000 0.00 0.00 34.83 4.18
3002 7589 6.039047 AGTGACTTAGCCGAAATTATACTCGA 59.961 38.462 0.00 0.00 37.23 4.04
3003 7590 6.862090 GTGACTTAGCCGAAATTATACTCGAT 59.138 38.462 0.00 0.00 37.23 3.59
3004 7591 7.381678 GTGACTTAGCCGAAATTATACTCGATT 59.618 37.037 0.00 0.00 37.23 3.34
3005 7592 8.570488 TGACTTAGCCGAAATTATACTCGATTA 58.430 33.333 0.00 0.00 37.23 1.75
3006 7593 9.570488 GACTTAGCCGAAATTATACTCGATTAT 57.430 33.333 0.65 0.65 37.23 1.28
3007 7594 9.355215 ACTTAGCCGAAATTATACTCGATTATG 57.645 33.333 5.60 0.00 37.23 1.90
3008 7595 9.569167 CTTAGCCGAAATTATACTCGATTATGA 57.431 33.333 5.60 0.00 37.23 2.15
3009 7596 7.813852 AGCCGAAATTATACTCGATTATGAC 57.186 36.000 5.60 0.00 37.23 3.06
3010 7597 6.812160 AGCCGAAATTATACTCGATTATGACC 59.188 38.462 5.60 0.00 37.23 4.02
3011 7598 6.588756 GCCGAAATTATACTCGATTATGACCA 59.411 38.462 5.60 0.00 37.23 4.02
3012 7599 7.201444 GCCGAAATTATACTCGATTATGACCAG 60.201 40.741 5.60 0.00 37.23 4.00
3013 7600 7.275779 CCGAAATTATACTCGATTATGACCAGG 59.724 40.741 5.60 0.00 37.23 4.45
3014 7601 7.201444 CGAAATTATACTCGATTATGACCAGGC 60.201 40.741 5.60 0.00 37.23 4.85
3015 7602 6.859112 ATTATACTCGATTATGACCAGGCT 57.141 37.500 5.60 0.00 0.00 4.58
3016 7603 2.898729 ACTCGATTATGACCAGGCTG 57.101 50.000 7.75 7.75 0.00 4.85
3017 7604 2.111384 ACTCGATTATGACCAGGCTGT 58.889 47.619 14.43 1.17 0.00 4.40
3018 7605 2.101582 ACTCGATTATGACCAGGCTGTC 59.898 50.000 14.43 11.41 35.77 3.51
3019 7606 1.412710 TCGATTATGACCAGGCTGTCC 59.587 52.381 14.43 5.10 34.25 4.02
3020 7607 1.541233 CGATTATGACCAGGCTGTCCC 60.541 57.143 14.43 2.48 34.25 4.46
3021 7608 1.490490 GATTATGACCAGGCTGTCCCA 59.510 52.381 14.43 8.36 34.25 4.37
3022 7609 0.618458 TTATGACCAGGCTGTCCCAC 59.382 55.000 14.43 0.63 34.25 4.61
3023 7610 0.546507 TATGACCAGGCTGTCCCACA 60.547 55.000 14.43 6.31 34.25 4.17
3024 7611 2.032681 GACCAGGCTGTCCCACAC 59.967 66.667 14.43 0.00 35.39 3.82
3025 7612 2.772191 ACCAGGCTGTCCCACACA 60.772 61.111 14.43 0.00 35.39 3.72
3026 7613 2.129555 GACCAGGCTGTCCCACACAT 62.130 60.000 14.43 0.00 33.23 3.21
3027 7614 0.840288 ACCAGGCTGTCCCACACATA 60.840 55.000 14.43 0.00 33.23 2.29
3028 7615 0.327924 CCAGGCTGTCCCACACATAA 59.672 55.000 14.43 0.00 33.23 1.90
3029 7616 1.679944 CCAGGCTGTCCCACACATAAG 60.680 57.143 14.43 0.00 33.23 1.73
3030 7617 0.035056 AGGCTGTCCCACACATAAGC 60.035 55.000 0.00 0.00 33.23 3.09
3031 7618 1.369091 GGCTGTCCCACACATAAGCG 61.369 60.000 0.00 0.00 33.23 4.68
3032 7619 0.673644 GCTGTCCCACACATAAGCGT 60.674 55.000 0.00 0.00 33.23 5.07
3033 7620 1.808411 CTGTCCCACACATAAGCGTT 58.192 50.000 0.00 0.00 33.23 4.84
3034 7621 1.464608 CTGTCCCACACATAAGCGTTG 59.535 52.381 0.00 0.00 33.23 4.10
3035 7622 1.070914 TGTCCCACACATAAGCGTTGA 59.929 47.619 0.00 0.00 0.00 3.18
3036 7623 1.463444 GTCCCACACATAAGCGTTGAC 59.537 52.381 0.00 0.00 0.00 3.18
3037 7624 0.802494 CCCACACATAAGCGTTGACC 59.198 55.000 0.00 0.00 0.00 4.02
3038 7625 0.442310 CCACACATAAGCGTTGACCG 59.558 55.000 0.00 0.00 40.40 4.79
3050 7637 1.322338 CGTTGACCGCTACATTTACCG 59.678 52.381 0.00 0.00 0.00 4.02
3051 7638 2.340337 GTTGACCGCTACATTTACCGT 58.660 47.619 0.00 0.00 0.00 4.83
3052 7639 2.738314 GTTGACCGCTACATTTACCGTT 59.262 45.455 0.00 0.00 0.00 4.44
3053 7640 3.865011 TGACCGCTACATTTACCGTTA 57.135 42.857 0.00 0.00 0.00 3.18
3054 7641 4.389890 TGACCGCTACATTTACCGTTAT 57.610 40.909 0.00 0.00 0.00 1.89
3055 7642 4.114073 TGACCGCTACATTTACCGTTATG 58.886 43.478 0.00 0.00 0.00 1.90
3056 7643 4.142204 TGACCGCTACATTTACCGTTATGA 60.142 41.667 0.00 0.00 0.00 2.15
3057 7644 4.114794 ACCGCTACATTTACCGTTATGAC 58.885 43.478 0.00 0.00 0.00 3.06
3058 7645 4.114073 CCGCTACATTTACCGTTATGACA 58.886 43.478 0.00 0.00 0.00 3.58
3059 7646 4.748102 CCGCTACATTTACCGTTATGACAT 59.252 41.667 0.00 0.00 0.00 3.06
3060 7647 5.333035 CCGCTACATTTACCGTTATGACATG 60.333 44.000 0.00 0.00 0.00 3.21
3061 7648 5.233476 CGCTACATTTACCGTTATGACATGT 59.767 40.000 0.00 0.00 0.00 3.21
3062 7649 6.418523 CGCTACATTTACCGTTATGACATGTA 59.581 38.462 0.00 0.00 0.00 2.29
3063 7650 7.358105 CGCTACATTTACCGTTATGACATGTAG 60.358 40.741 15.28 15.28 42.69 2.74
3064 7651 7.095774 GCTACATTTACCGTTATGACATGTAGG 60.096 40.741 18.58 1.02 41.21 3.18
3065 7652 6.053005 ACATTTACCGTTATGACATGTAGGG 58.947 40.000 0.00 0.35 0.00 3.53
3066 7653 2.614829 ACCGTTATGACATGTAGGGC 57.385 50.000 0.00 0.00 0.00 5.19
3067 7654 1.140252 ACCGTTATGACATGTAGGGCC 59.860 52.381 0.00 0.00 0.00 5.80
3068 7655 1.542547 CCGTTATGACATGTAGGGCCC 60.543 57.143 16.46 16.46 0.00 5.80
3069 7656 1.140052 CGTTATGACATGTAGGGCCCA 59.860 52.381 27.56 7.27 0.00 5.36
3070 7657 2.806745 CGTTATGACATGTAGGGCCCAG 60.807 54.545 27.56 10.66 0.00 4.45
3071 7658 2.172717 GTTATGACATGTAGGGCCCAGT 59.827 50.000 27.56 14.13 0.00 4.00
3072 7659 0.548031 ATGACATGTAGGGCCCAGTG 59.452 55.000 27.56 18.51 0.00 3.66
3073 7660 1.224592 GACATGTAGGGCCCAGTGG 59.775 63.158 27.56 11.87 0.00 4.00
3074 7661 1.541368 ACATGTAGGGCCCAGTGGT 60.541 57.895 27.56 12.59 0.00 4.16
3075 7662 1.224592 CATGTAGGGCCCAGTGGTC 59.775 63.158 27.56 7.72 34.57 4.02
3076 7663 1.229820 ATGTAGGGCCCAGTGGTCA 60.230 57.895 27.56 13.35 38.32 4.02
3077 7664 1.274703 ATGTAGGGCCCAGTGGTCAG 61.275 60.000 27.56 0.00 38.32 3.51
3078 7665 1.918800 GTAGGGCCCAGTGGTCAGT 60.919 63.158 27.56 1.16 38.32 3.41
3079 7666 1.918293 TAGGGCCCAGTGGTCAGTG 60.918 63.158 27.56 0.00 38.32 3.66
3080 7667 2.689573 TAGGGCCCAGTGGTCAGTGT 62.690 60.000 27.56 0.00 38.32 3.55
3081 7668 2.032681 GGCCCAGTGGTCAGTGTC 59.967 66.667 8.74 0.00 35.79 3.67
3082 7669 2.032681 GCCCAGTGGTCAGTGTCC 59.967 66.667 8.74 0.00 0.00 4.02
3083 7670 2.750350 CCCAGTGGTCAGTGTCCC 59.250 66.667 8.74 0.00 0.00 4.46
3084 7671 2.146724 CCCAGTGGTCAGTGTCCCA 61.147 63.158 8.74 2.25 0.00 4.37
3085 7672 1.492133 CCCAGTGGTCAGTGTCCCAT 61.492 60.000 8.74 0.00 32.32 4.00
3086 7673 0.036010 CCAGTGGTCAGTGTCCCATC 60.036 60.000 0.00 1.39 32.32 3.51
3087 7674 0.979665 CAGTGGTCAGTGTCCCATCT 59.020 55.000 3.84 3.34 32.32 2.90
3088 7675 2.179427 CAGTGGTCAGTGTCCCATCTA 58.821 52.381 3.84 0.00 32.32 1.98
3089 7676 2.567169 CAGTGGTCAGTGTCCCATCTAA 59.433 50.000 3.84 0.00 32.32 2.10
3090 7677 3.198635 CAGTGGTCAGTGTCCCATCTAAT 59.801 47.826 3.84 0.00 32.32 1.73
3091 7678 3.846588 AGTGGTCAGTGTCCCATCTAATT 59.153 43.478 3.84 0.00 32.32 1.40
3092 7679 3.941483 GTGGTCAGTGTCCCATCTAATTG 59.059 47.826 3.84 0.00 32.32 2.32
3093 7680 3.587061 TGGTCAGTGTCCCATCTAATTGT 59.413 43.478 3.84 0.00 0.00 2.71
3094 7681 3.941483 GGTCAGTGTCCCATCTAATTGTG 59.059 47.826 0.00 0.00 0.00 3.33
3095 7682 4.323485 GGTCAGTGTCCCATCTAATTGTGA 60.323 45.833 0.00 0.00 0.00 3.58
3096 7683 5.245531 GTCAGTGTCCCATCTAATTGTGAA 58.754 41.667 0.00 0.00 0.00 3.18
3097 7684 5.882557 GTCAGTGTCCCATCTAATTGTGAAT 59.117 40.000 0.00 0.00 0.00 2.57
3098 7685 7.047891 GTCAGTGTCCCATCTAATTGTGAATA 58.952 38.462 0.00 0.00 0.00 1.75
3099 7686 7.716998 GTCAGTGTCCCATCTAATTGTGAATAT 59.283 37.037 0.00 0.00 0.00 1.28
3100 7687 8.933653 TCAGTGTCCCATCTAATTGTGAATATA 58.066 33.333 0.00 0.00 0.00 0.86
3101 7688 8.993121 CAGTGTCCCATCTAATTGTGAATATAC 58.007 37.037 0.00 0.00 0.00 1.47
3102 7689 8.713971 AGTGTCCCATCTAATTGTGAATATACA 58.286 33.333 0.00 0.00 0.00 2.29
3103 7690 9.337396 GTGTCCCATCTAATTGTGAATATACAA 57.663 33.333 0.00 0.00 43.93 2.41
3104 7691 9.913310 TGTCCCATCTAATTGTGAATATACAAA 57.087 29.630 0.00 0.00 43.13 2.83
3128 7715 8.658499 AATTACTAGTTAGGCTAATCAAACCG 57.342 34.615 10.65 0.00 0.00 4.44
3129 7716 5.672421 ACTAGTTAGGCTAATCAAACCGT 57.328 39.130 10.65 0.00 0.00 4.83
3130 7717 5.416947 ACTAGTTAGGCTAATCAAACCGTG 58.583 41.667 10.65 0.00 0.00 4.94
3131 7718 3.007635 AGTTAGGCTAATCAAACCGTGC 58.992 45.455 10.65 0.00 0.00 5.34
3132 7719 2.745281 GTTAGGCTAATCAAACCGTGCA 59.255 45.455 10.65 0.00 0.00 4.57
3133 7720 1.453155 AGGCTAATCAAACCGTGCAG 58.547 50.000 0.00 0.00 0.00 4.41
3135 7722 0.179163 GCTAATCAAACCGTGCAGGC 60.179 55.000 0.00 0.00 46.52 4.85
3136 7723 0.451783 CTAATCAAACCGTGCAGGCC 59.548 55.000 0.00 0.00 46.52 5.19
3137 7724 0.963355 TAATCAAACCGTGCAGGCCC 60.963 55.000 0.00 0.00 46.52 5.80
3138 7725 2.992817 AATCAAACCGTGCAGGCCCA 62.993 55.000 0.00 0.00 46.52 5.36
3139 7726 3.673484 CAAACCGTGCAGGCCCAG 61.673 66.667 0.00 0.00 46.52 4.45
3140 7727 4.204028 AAACCGTGCAGGCCCAGT 62.204 61.111 0.00 0.00 46.52 4.00
3141 7728 4.954970 AACCGTGCAGGCCCAGTG 62.955 66.667 0.00 0.00 46.52 3.66
3145 7732 4.269523 GTGCAGGCCCAGTGGTCA 62.270 66.667 8.74 0.00 39.40 4.02
3146 7733 3.957586 TGCAGGCCCAGTGGTCAG 61.958 66.667 8.74 0.00 39.40 3.51
3147 7734 3.958860 GCAGGCCCAGTGGTCAGT 61.959 66.667 8.74 0.00 39.40 3.41
3148 7735 2.033141 CAGGCCCAGTGGTCAGTG 59.967 66.667 8.74 0.00 39.40 3.66
3149 7736 2.448542 AGGCCCAGTGGTCAGTGT 60.449 61.111 8.74 0.00 39.40 3.55
3150 7737 2.078665 AGGCCCAGTGGTCAGTGTT 61.079 57.895 8.74 0.00 39.40 3.32
3151 7738 1.600916 GGCCCAGTGGTCAGTGTTC 60.601 63.158 8.74 0.00 35.79 3.18
3152 7739 1.600916 GCCCAGTGGTCAGTGTTCC 60.601 63.158 8.74 0.00 0.00 3.62
3153 7740 1.836391 CCCAGTGGTCAGTGTTCCA 59.164 57.895 8.74 5.88 0.00 3.53
3154 7741 0.401738 CCCAGTGGTCAGTGTTCCAT 59.598 55.000 8.74 1.70 36.09 3.41
3155 7742 1.611673 CCCAGTGGTCAGTGTTCCATC 60.612 57.143 8.74 7.09 36.09 3.51
3156 7743 1.349026 CCAGTGGTCAGTGTTCCATCT 59.651 52.381 0.00 8.67 36.09 2.90
3157 7744 2.567169 CCAGTGGTCAGTGTTCCATCTA 59.433 50.000 0.00 0.00 36.09 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.720902 CATGCCGGTGGTGCCTGA 62.721 66.667 1.90 0.00 34.25 3.86
21 22 2.513204 CTCCTGCAGCCATCACGG 60.513 66.667 8.66 0.00 38.11 4.94
22 23 2.513204 CCTCCTGCAGCCATCACG 60.513 66.667 8.66 0.00 0.00 4.35
23 24 1.451028 GTCCTCCTGCAGCCATCAC 60.451 63.158 8.66 0.00 0.00 3.06
24 25 0.325577 TAGTCCTCCTGCAGCCATCA 60.326 55.000 8.66 0.00 0.00 3.07
25 26 0.105778 GTAGTCCTCCTGCAGCCATC 59.894 60.000 8.66 0.00 0.00 3.51
26 27 0.618680 TGTAGTCCTCCTGCAGCCAT 60.619 55.000 8.66 0.00 31.58 4.40
27 28 1.229177 TGTAGTCCTCCTGCAGCCA 60.229 57.895 8.66 0.00 31.58 4.75
28 29 1.219393 GTGTAGTCCTCCTGCAGCC 59.781 63.158 8.66 0.00 36.38 4.85
29 30 1.153745 CGTGTAGTCCTCCTGCAGC 60.154 63.158 8.66 0.00 36.38 5.25
30 31 1.107114 ATCGTGTAGTCCTCCTGCAG 58.893 55.000 6.78 6.78 36.38 4.41
31 32 1.204704 CAATCGTGTAGTCCTCCTGCA 59.795 52.381 0.00 0.00 32.92 4.41
32 33 1.927895 CAATCGTGTAGTCCTCCTGC 58.072 55.000 0.00 0.00 0.00 4.85
33 34 1.471676 GGCAATCGTGTAGTCCTCCTG 60.472 57.143 0.00 0.00 0.00 3.86
34 35 0.824759 GGCAATCGTGTAGTCCTCCT 59.175 55.000 0.00 0.00 0.00 3.69
35 36 0.179081 GGGCAATCGTGTAGTCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
36 37 0.824759 AGGGCAATCGTGTAGTCCTC 59.175 55.000 0.00 0.00 0.00 3.71
37 38 0.824759 GAGGGCAATCGTGTAGTCCT 59.175 55.000 0.00 0.00 0.00 3.85
38 39 0.824759 AGAGGGCAATCGTGTAGTCC 59.175 55.000 0.00 0.00 0.00 3.85
39 40 1.202428 GGAGAGGGCAATCGTGTAGTC 60.202 57.143 0.00 0.00 0.00 2.59
40 41 0.824759 GGAGAGGGCAATCGTGTAGT 59.175 55.000 0.00 0.00 0.00 2.73
41 42 0.105039 GGGAGAGGGCAATCGTGTAG 59.895 60.000 0.00 0.00 0.00 2.74
42 43 0.325296 AGGGAGAGGGCAATCGTGTA 60.325 55.000 0.00 0.00 0.00 2.90
43 44 1.201429 AAGGGAGAGGGCAATCGTGT 61.201 55.000 0.00 0.00 0.00 4.49
44 45 0.745845 CAAGGGAGAGGGCAATCGTG 60.746 60.000 0.00 0.00 0.00 4.35
45 46 1.201429 ACAAGGGAGAGGGCAATCGT 61.201 55.000 0.00 0.00 0.00 3.73
46 47 0.462759 GACAAGGGAGAGGGCAATCG 60.463 60.000 0.00 0.00 0.00 3.34
47 48 0.106967 GGACAAGGGAGAGGGCAATC 60.107 60.000 0.00 0.00 0.00 2.67
48 49 1.915078 CGGACAAGGGAGAGGGCAAT 61.915 60.000 0.00 0.00 0.00 3.56
49 50 2.592993 CGGACAAGGGAGAGGGCAA 61.593 63.158 0.00 0.00 0.00 4.52
50 51 3.003173 CGGACAAGGGAGAGGGCA 61.003 66.667 0.00 0.00 0.00 5.36
51 52 4.475135 GCGGACAAGGGAGAGGGC 62.475 72.222 0.00 0.00 0.00 5.19
52 53 1.381327 TAGCGGACAAGGGAGAGGG 60.381 63.158 0.00 0.00 0.00 4.30
53 54 1.677637 GGTAGCGGACAAGGGAGAGG 61.678 65.000 0.00 0.00 0.00 3.69
54 55 0.684805 AGGTAGCGGACAAGGGAGAG 60.685 60.000 0.00 0.00 0.00 3.20
55 56 0.683504 GAGGTAGCGGACAAGGGAGA 60.684 60.000 0.00 0.00 0.00 3.71
56 57 1.677637 GGAGGTAGCGGACAAGGGAG 61.678 65.000 0.00 0.00 0.00 4.30
57 58 1.684734 GGAGGTAGCGGACAAGGGA 60.685 63.158 0.00 0.00 0.00 4.20
58 59 2.732619 GGGAGGTAGCGGACAAGGG 61.733 68.421 0.00 0.00 0.00 3.95
59 60 2.901042 GGGAGGTAGCGGACAAGG 59.099 66.667 0.00 0.00 0.00 3.61
60 61 2.494918 CGGGAGGTAGCGGACAAG 59.505 66.667 0.00 0.00 0.00 3.16
61 62 3.766691 GCGGGAGGTAGCGGACAA 61.767 66.667 0.00 0.00 0.00 3.18
94 95 2.897350 GCAGGCCGGAATCGAAGG 60.897 66.667 5.05 0.00 39.00 3.46
95 96 3.264897 CGCAGGCCGGAATCGAAG 61.265 66.667 5.05 0.00 39.00 3.79
123 124 2.741486 TTTAGTGTCCACCTGCCGGC 62.741 60.000 22.73 22.73 0.00 6.13
124 125 0.953960 GTTTAGTGTCCACCTGCCGG 60.954 60.000 0.00 0.00 0.00 6.13
125 126 0.953960 GGTTTAGTGTCCACCTGCCG 60.954 60.000 0.00 0.00 0.00 5.69
126 127 0.608308 GGGTTTAGTGTCCACCTGCC 60.608 60.000 0.00 0.00 0.00 4.85
127 128 0.109723 TGGGTTTAGTGTCCACCTGC 59.890 55.000 0.00 0.00 0.00 4.85
128 129 2.039746 TGATGGGTTTAGTGTCCACCTG 59.960 50.000 0.00 0.00 32.90 4.00
129 130 2.039879 GTGATGGGTTTAGTGTCCACCT 59.960 50.000 0.00 0.00 32.90 4.00
130 131 2.039879 AGTGATGGGTTTAGTGTCCACC 59.960 50.000 0.00 0.00 32.90 4.61
131 132 3.074412 CAGTGATGGGTTTAGTGTCCAC 58.926 50.000 0.00 0.00 32.90 4.02
132 133 2.552155 GCAGTGATGGGTTTAGTGTCCA 60.552 50.000 0.00 0.00 34.79 4.02
133 134 2.084546 GCAGTGATGGGTTTAGTGTCC 58.915 52.381 0.00 0.00 0.00 4.02
134 135 2.084546 GGCAGTGATGGGTTTAGTGTC 58.915 52.381 0.00 0.00 0.00 3.67
135 136 1.271926 GGGCAGTGATGGGTTTAGTGT 60.272 52.381 0.00 0.00 0.00 3.55
136 137 1.004745 AGGGCAGTGATGGGTTTAGTG 59.995 52.381 0.00 0.00 0.00 2.74
137 138 1.372501 AGGGCAGTGATGGGTTTAGT 58.627 50.000 0.00 0.00 0.00 2.24
138 139 2.025887 AGAAGGGCAGTGATGGGTTTAG 60.026 50.000 0.00 0.00 0.00 1.85
139 140 1.992557 AGAAGGGCAGTGATGGGTTTA 59.007 47.619 0.00 0.00 0.00 2.01
140 141 0.779997 AGAAGGGCAGTGATGGGTTT 59.220 50.000 0.00 0.00 0.00 3.27
141 142 1.561542 CTAGAAGGGCAGTGATGGGTT 59.438 52.381 0.00 0.00 0.00 4.11
142 143 1.207791 CTAGAAGGGCAGTGATGGGT 58.792 55.000 0.00 0.00 0.00 4.51
143 144 1.415659 CTCTAGAAGGGCAGTGATGGG 59.584 57.143 0.00 0.00 0.00 4.00
144 145 2.114616 ACTCTAGAAGGGCAGTGATGG 58.885 52.381 0.00 0.00 0.00 3.51
145 146 3.176552 CACTCTAGAAGGGCAGTGATG 57.823 52.381 0.00 0.00 38.90 3.07
153 154 2.357637 CTCTTCTCGCACTCTAGAAGGG 59.642 54.545 11.11 5.13 45.74 3.95
154 155 2.357637 CCTCTTCTCGCACTCTAGAAGG 59.642 54.545 11.11 3.88 45.74 3.46
155 156 2.357637 CCCTCTTCTCGCACTCTAGAAG 59.642 54.545 5.87 5.87 46.63 2.85
156 157 2.370349 CCCTCTTCTCGCACTCTAGAA 58.630 52.381 0.00 0.00 0.00 2.10
157 158 1.408961 CCCCTCTTCTCGCACTCTAGA 60.409 57.143 0.00 0.00 0.00 2.43
158 159 1.028905 CCCCTCTTCTCGCACTCTAG 58.971 60.000 0.00 0.00 0.00 2.43
159 160 0.395862 CCCCCTCTTCTCGCACTCTA 60.396 60.000 0.00 0.00 0.00 2.43
160 161 1.684049 CCCCCTCTTCTCGCACTCT 60.684 63.158 0.00 0.00 0.00 3.24
161 162 2.896443 CCCCCTCTTCTCGCACTC 59.104 66.667 0.00 0.00 0.00 3.51
162 163 3.394836 GCCCCCTCTTCTCGCACT 61.395 66.667 0.00 0.00 0.00 4.40
163 164 4.821589 CGCCCCCTCTTCTCGCAC 62.822 72.222 0.00 0.00 0.00 5.34
166 167 3.532155 CTCCGCCCCCTCTTCTCG 61.532 72.222 0.00 0.00 0.00 4.04
167 168 3.157949 CCTCCGCCCCCTCTTCTC 61.158 72.222 0.00 0.00 0.00 2.87
168 169 3.564347 AACCTCCGCCCCCTCTTCT 62.564 63.158 0.00 0.00 0.00 2.85
169 170 3.009714 AACCTCCGCCCCCTCTTC 61.010 66.667 0.00 0.00 0.00 2.87
170 171 3.330720 CAACCTCCGCCCCCTCTT 61.331 66.667 0.00 0.00 0.00 2.85
179 180 4.760047 CCCGTCCAGCAACCTCCG 62.760 72.222 0.00 0.00 0.00 4.63
180 181 3.637273 ACCCGTCCAGCAACCTCC 61.637 66.667 0.00 0.00 0.00 4.30
181 182 2.358737 CACCCGTCCAGCAACCTC 60.359 66.667 0.00 0.00 0.00 3.85
182 183 3.953775 CCACCCGTCCAGCAACCT 61.954 66.667 0.00 0.00 0.00 3.50
184 185 3.485346 TTCCCACCCGTCCAGCAAC 62.485 63.158 0.00 0.00 0.00 4.17
185 186 3.172106 TTCCCACCCGTCCAGCAA 61.172 61.111 0.00 0.00 0.00 3.91
186 187 3.636231 CTTCCCACCCGTCCAGCA 61.636 66.667 0.00 0.00 0.00 4.41
187 188 4.410400 CCTTCCCACCCGTCCAGC 62.410 72.222 0.00 0.00 0.00 4.85
188 189 3.717294 CCCTTCCCACCCGTCCAG 61.717 72.222 0.00 0.00 0.00 3.86
194 195 4.678743 GTGTGCCCCTTCCCACCC 62.679 72.222 0.00 0.00 0.00 4.61
195 196 3.569200 GAGTGTGCCCCTTCCCACC 62.569 68.421 0.00 0.00 0.00 4.61
196 197 2.034221 GAGTGTGCCCCTTCCCAC 59.966 66.667 0.00 0.00 0.00 4.61
197 198 2.121963 AGAGTGTGCCCCTTCCCA 60.122 61.111 0.00 0.00 0.00 4.37
198 199 2.352805 CAGAGTGTGCCCCTTCCC 59.647 66.667 0.00 0.00 0.00 3.97
199 200 2.352805 CCAGAGTGTGCCCCTTCC 59.647 66.667 0.00 0.00 0.00 3.46
200 201 2.360475 GCCAGAGTGTGCCCCTTC 60.360 66.667 0.00 0.00 0.00 3.46
201 202 4.335647 CGCCAGAGTGTGCCCCTT 62.336 66.667 0.00 0.00 0.00 3.95
225 226 3.978723 CTCTCGTCCACCGCTGCAG 62.979 68.421 10.11 10.11 36.19 4.41
226 227 4.056125 CTCTCGTCCACCGCTGCA 62.056 66.667 0.00 0.00 36.19 4.41
227 228 3.973267 GACTCTCGTCCACCGCTGC 62.973 68.421 0.00 0.00 36.19 5.25
228 229 2.179517 GACTCTCGTCCACCGCTG 59.820 66.667 0.00 0.00 36.19 5.18
229 230 3.432588 CGACTCTCGTCCACCGCT 61.433 66.667 0.00 0.00 36.82 5.52
230 231 3.384014 CTCGACTCTCGTCCACCGC 62.384 68.421 0.00 0.00 41.35 5.68
231 232 2.751913 CCTCGACTCTCGTCCACCG 61.752 68.421 0.00 0.00 41.35 4.94
232 233 3.053849 GCCTCGACTCTCGTCCACC 62.054 68.421 0.00 0.00 41.35 4.61
233 234 2.259875 CTGCCTCGACTCTCGTCCAC 62.260 65.000 0.00 0.00 41.35 4.02
234 235 2.033602 TGCCTCGACTCTCGTCCA 59.966 61.111 0.00 0.00 41.35 4.02
235 236 2.795297 CTGCCTCGACTCTCGTCC 59.205 66.667 0.00 0.00 41.35 4.79
236 237 2.101380 GCTGCCTCGACTCTCGTC 59.899 66.667 0.00 0.00 41.35 4.20
237 238 2.673341 TGCTGCCTCGACTCTCGT 60.673 61.111 0.00 0.00 41.35 4.18
238 239 1.723608 ATCTGCTGCCTCGACTCTCG 61.724 60.000 0.00 0.00 42.10 4.04
239 240 1.001815 GTATCTGCTGCCTCGACTCTC 60.002 57.143 0.00 0.00 0.00 3.20
240 241 1.028905 GTATCTGCTGCCTCGACTCT 58.971 55.000 0.00 0.00 0.00 3.24
241 242 0.317436 CGTATCTGCTGCCTCGACTC 60.317 60.000 0.00 0.00 0.00 3.36
242 243 1.729470 CCGTATCTGCTGCCTCGACT 61.729 60.000 0.00 0.00 0.00 4.18
243 244 1.299468 CCGTATCTGCTGCCTCGAC 60.299 63.158 0.00 0.00 0.00 4.20
244 245 1.035385 TTCCGTATCTGCTGCCTCGA 61.035 55.000 0.00 0.00 0.00 4.04
245 246 0.032678 ATTCCGTATCTGCTGCCTCG 59.967 55.000 0.00 0.00 0.00 4.63
246 247 1.869767 CAATTCCGTATCTGCTGCCTC 59.130 52.381 0.00 0.00 0.00 4.70
247 248 1.959042 CAATTCCGTATCTGCTGCCT 58.041 50.000 0.00 0.00 0.00 4.75
248 249 0.308993 GCAATTCCGTATCTGCTGCC 59.691 55.000 0.00 0.00 0.00 4.85
249 250 0.308993 GGCAATTCCGTATCTGCTGC 59.691 55.000 0.00 0.00 35.13 5.25
260 261 2.710902 GGACAAGGGCGGCAATTCC 61.711 63.158 12.47 6.85 0.00 3.01
261 262 1.976474 TGGACAAGGGCGGCAATTC 60.976 57.895 12.47 0.61 0.00 2.17
262 263 2.117206 TGGACAAGGGCGGCAATT 59.883 55.556 12.47 1.39 0.00 2.32
263 264 2.676471 GTGGACAAGGGCGGCAAT 60.676 61.111 12.47 0.00 0.00 3.56
264 265 4.966787 GGTGGACAAGGGCGGCAA 62.967 66.667 12.47 0.00 0.00 4.52
286 287 3.869272 CATCGCCTTGCAGCCGTC 61.869 66.667 0.00 0.00 0.00 4.79
291 292 3.570638 CTCCGCATCGCCTTGCAG 61.571 66.667 6.37 0.00 42.91 4.41
304 305 4.821589 GGACGAGCTTGCCCTCCG 62.822 72.222 0.00 0.00 0.00 4.63
305 306 3.378399 GAGGACGAGCTTGCCCTCC 62.378 68.421 22.66 12.31 39.33 4.30
306 307 2.185608 GAGGACGAGCTTGCCCTC 59.814 66.667 19.46 19.46 38.47 4.30
307 308 3.764466 CGAGGACGAGCTTGCCCT 61.764 66.667 8.87 8.87 42.66 5.19
308 309 3.991536 GACGAGGACGAGCTTGCCC 62.992 68.421 0.00 0.00 42.66 5.36
309 310 2.507324 GACGAGGACGAGCTTGCC 60.507 66.667 0.00 3.53 42.66 4.52
310 311 2.876645 CGACGAGGACGAGCTTGC 60.877 66.667 0.00 0.00 42.66 4.01
311 312 2.876645 GCGACGAGGACGAGCTTG 60.877 66.667 0.00 0.00 42.66 4.01
312 313 4.117661 GGCGACGAGGACGAGCTT 62.118 66.667 0.00 0.00 42.26 3.74
343 344 0.591741 CGATGACTAGGACGCGTTCC 60.592 60.000 15.53 16.33 46.33 3.62
344 345 0.098376 ACGATGACTAGGACGCGTTC 59.902 55.000 15.53 12.88 0.00 3.95
345 346 0.098376 GACGATGACTAGGACGCGTT 59.902 55.000 15.53 0.00 31.58 4.84
346 347 1.022982 TGACGATGACTAGGACGCGT 61.023 55.000 13.85 13.85 34.39 6.01
347 348 0.316278 CTGACGATGACTAGGACGCG 60.316 60.000 3.53 3.53 0.00 6.01
348 349 1.015109 TCTGACGATGACTAGGACGC 58.985 55.000 0.00 0.00 0.00 5.19
349 350 1.331138 GGTCTGACGATGACTAGGACG 59.669 57.143 1.07 0.00 35.04 4.79
350 351 2.645802 AGGTCTGACGATGACTAGGAC 58.354 52.381 1.07 0.00 35.04 3.85
351 352 4.708576 ATAGGTCTGACGATGACTAGGA 57.291 45.455 1.07 0.00 35.04 2.94
352 353 6.231951 TCTAATAGGTCTGACGATGACTAGG 58.768 44.000 1.07 0.00 35.04 3.02
353 354 6.370442 CCTCTAATAGGTCTGACGATGACTAG 59.630 46.154 1.07 0.00 40.94 2.57
354 355 6.231951 CCTCTAATAGGTCTGACGATGACTA 58.768 44.000 1.07 0.00 40.94 2.59
355 356 5.067273 CCTCTAATAGGTCTGACGATGACT 58.933 45.833 1.07 0.00 40.94 3.41
356 357 4.216687 CCCTCTAATAGGTCTGACGATGAC 59.783 50.000 1.07 0.00 44.90 3.06
357 358 4.399219 CCCTCTAATAGGTCTGACGATGA 58.601 47.826 1.07 0.00 44.90 2.92
358 359 3.508012 CCCCTCTAATAGGTCTGACGATG 59.492 52.174 1.07 0.00 44.90 3.84
359 360 3.140519 ACCCCTCTAATAGGTCTGACGAT 59.859 47.826 1.07 0.00 44.90 3.73
360 361 2.512896 ACCCCTCTAATAGGTCTGACGA 59.487 50.000 1.07 0.00 44.90 4.20
361 362 2.946785 ACCCCTCTAATAGGTCTGACG 58.053 52.381 1.07 0.00 44.90 4.35
362 363 4.031611 ACAACCCCTCTAATAGGTCTGAC 58.968 47.826 0.00 0.00 44.90 3.51
363 364 4.287552 GACAACCCCTCTAATAGGTCTGA 58.712 47.826 0.00 0.00 44.90 3.27
364 365 3.068307 CGACAACCCCTCTAATAGGTCTG 59.932 52.174 0.00 0.00 44.90 3.51
365 366 3.297736 CGACAACCCCTCTAATAGGTCT 58.702 50.000 0.00 0.00 44.90 3.85
366 367 2.364647 CCGACAACCCCTCTAATAGGTC 59.635 54.545 0.00 0.00 44.90 3.85
367 368 2.292719 ACCGACAACCCCTCTAATAGGT 60.293 50.000 0.00 0.00 44.90 3.08
368 369 2.102588 CACCGACAACCCCTCTAATAGG 59.897 54.545 0.00 0.00 46.09 2.57
369 370 2.483188 GCACCGACAACCCCTCTAATAG 60.483 54.545 0.00 0.00 0.00 1.73
370 371 1.483415 GCACCGACAACCCCTCTAATA 59.517 52.381 0.00 0.00 0.00 0.98
371 372 0.252197 GCACCGACAACCCCTCTAAT 59.748 55.000 0.00 0.00 0.00 1.73
372 373 0.834687 AGCACCGACAACCCCTCTAA 60.835 55.000 0.00 0.00 0.00 2.10
373 374 1.229082 AGCACCGACAACCCCTCTA 60.229 57.895 0.00 0.00 0.00 2.43
374 375 2.526873 AGCACCGACAACCCCTCT 60.527 61.111 0.00 0.00 0.00 3.69
375 376 2.358737 CAGCACCGACAACCCCTC 60.359 66.667 0.00 0.00 0.00 4.30
376 377 3.953775 CCAGCACCGACAACCCCT 61.954 66.667 0.00 0.00 0.00 4.79
377 378 3.948719 TCCAGCACCGACAACCCC 61.949 66.667 0.00 0.00 0.00 4.95
378 379 2.668550 GTCCAGCACCGACAACCC 60.669 66.667 0.00 0.00 0.00 4.11
379 380 1.302511 ATGTCCAGCACCGACAACC 60.303 57.895 4.87 0.00 43.16 3.77
380 381 1.577328 CCATGTCCAGCACCGACAAC 61.577 60.000 4.87 0.00 43.16 3.32
381 382 1.302431 CCATGTCCAGCACCGACAA 60.302 57.895 4.87 0.00 43.16 3.18
382 383 2.050836 AACCATGTCCAGCACCGACA 62.051 55.000 3.42 3.42 44.00 4.35
383 384 1.302511 AACCATGTCCAGCACCGAC 60.303 57.895 0.00 0.00 0.00 4.79
384 385 1.302431 CAACCATGTCCAGCACCGA 60.302 57.895 0.00 0.00 0.00 4.69
385 386 1.302431 TCAACCATGTCCAGCACCG 60.302 57.895 0.00 0.00 0.00 4.94
386 387 1.577328 CGTCAACCATGTCCAGCACC 61.577 60.000 0.00 0.00 0.00 5.01
387 388 1.577328 CCGTCAACCATGTCCAGCAC 61.577 60.000 0.00 0.00 0.00 4.40
388 389 1.302431 CCGTCAACCATGTCCAGCA 60.302 57.895 0.00 0.00 0.00 4.41
389 390 1.003839 TCCGTCAACCATGTCCAGC 60.004 57.895 0.00 0.00 0.00 4.85
390 391 0.608130 TCTCCGTCAACCATGTCCAG 59.392 55.000 0.00 0.00 0.00 3.86
391 392 1.207089 GATCTCCGTCAACCATGTCCA 59.793 52.381 0.00 0.00 0.00 4.02
392 393 1.802880 CGATCTCCGTCAACCATGTCC 60.803 57.143 0.00 0.00 0.00 4.02
437 438 0.872021 CGCTCCTCACCGCTTCATAC 60.872 60.000 0.00 0.00 0.00 2.39
438 439 1.035385 TCGCTCCTCACCGCTTCATA 61.035 55.000 0.00 0.00 0.00 2.15
500 501 1.754234 GCCCACCATGACCCATGTC 60.754 63.158 0.00 0.00 39.94 3.06
520 521 1.352017 TCATGTTCACCACATCAGCCT 59.648 47.619 0.00 0.00 43.17 4.58
521 522 1.741706 CTCATGTTCACCACATCAGCC 59.258 52.381 0.00 0.00 43.17 4.85
532 533 1.142667 TGTCAAGCACCCTCATGTTCA 59.857 47.619 0.00 0.00 0.00 3.18
548 549 3.395639 GTCTCAAACGTATGGGTTGTCA 58.604 45.455 0.00 0.00 0.00 3.58
553 554 0.248289 CCGGTCTCAAACGTATGGGT 59.752 55.000 0.00 0.00 0.00 4.51
558 559 2.159338 GCTCATACCGGTCTCAAACGTA 60.159 50.000 12.40 0.00 0.00 3.57
560 561 1.278238 GCTCATACCGGTCTCAAACG 58.722 55.000 12.40 0.00 0.00 3.60
568 569 1.141881 CTGAAGCGCTCATACCGGT 59.858 57.895 12.06 13.98 38.13 5.28
626 628 2.433491 CGATGTCAAACGCCCGGA 60.433 61.111 0.73 0.00 0.00 5.14
628 630 1.847890 AAACCGATGTCAAACGCCCG 61.848 55.000 0.00 0.00 0.00 6.13
682 684 1.089920 CCCCTCGCTTGATCAAGTTG 58.910 55.000 30.88 24.19 40.45 3.16
769 786 1.953686 CCCTTCTTTTTGTCGCTTGGA 59.046 47.619 0.00 0.00 0.00 3.53
824 841 2.863153 CTGGTCAGCCGCTTTTCG 59.137 61.111 0.00 0.00 37.67 3.46
896 4375 1.007336 GTTAGGTGTGCGTCGTCTGG 61.007 60.000 0.00 0.00 0.00 3.86
913 4392 2.225091 TGGGGAATGCTGATGAGTTGTT 60.225 45.455 0.00 0.00 0.00 2.83
914 4393 1.355381 TGGGGAATGCTGATGAGTTGT 59.645 47.619 0.00 0.00 0.00 3.32
1293 4855 0.322816 AGAGTAACCGCGGGTCAGTA 60.323 55.000 31.76 4.12 33.12 2.74
1519 5087 0.472471 ACCACCTTGTCGATGTTGGT 59.528 50.000 0.00 0.00 0.00 3.67
1861 5436 3.695060 TCAGAGATAAGGAACTCGGACAC 59.305 47.826 0.00 0.00 38.49 3.67
2161 5736 4.850680 ACCAATTTTCATAGCCCGTTCTA 58.149 39.130 0.00 0.00 0.00 2.10
2201 5776 5.404968 GCATCTAGAAGACATACATCAGTGC 59.595 44.000 0.00 0.00 0.00 4.40
2309 5885 5.234752 GGTTCATAACAAACCATGGTTTCC 58.765 41.667 34.95 26.19 45.32 3.13
2332 5909 7.394359 TCAGGGAAAGTATTCAGGAATGAAAAG 59.606 37.037 4.81 0.00 37.29 2.27
2353 5930 6.883217 CAGGATTAACATATCAGGATTCAGGG 59.117 42.308 0.00 0.00 0.00 4.45
2358 5935 8.663167 TCACATCAGGATTAACATATCAGGATT 58.337 33.333 0.00 0.00 0.00 3.01
2359 5936 8.211030 TCACATCAGGATTAACATATCAGGAT 57.789 34.615 0.00 0.00 0.00 3.24
2360 5937 7.616528 TCACATCAGGATTAACATATCAGGA 57.383 36.000 0.00 0.00 0.00 3.86
2361 5938 7.935755 AGTTCACATCAGGATTAACATATCAGG 59.064 37.037 0.00 0.00 0.00 3.86
2362 5939 8.899427 AGTTCACATCAGGATTAACATATCAG 57.101 34.615 0.00 0.00 0.00 2.90
2363 5940 9.685276 AAAGTTCACATCAGGATTAACATATCA 57.315 29.630 0.00 0.00 0.00 2.15
2367 5944 8.306761 GGAAAAAGTTCACATCAGGATTAACAT 58.693 33.333 0.00 0.00 35.25 2.71
2368 5945 7.255801 GGGAAAAAGTTCACATCAGGATTAACA 60.256 37.037 0.00 0.00 37.11 2.41
2369 5946 7.039714 AGGGAAAAAGTTCACATCAGGATTAAC 60.040 37.037 0.00 0.00 39.88 2.01
2370 5947 7.010160 AGGGAAAAAGTTCACATCAGGATTAA 58.990 34.615 0.00 0.00 39.88 1.40
2371 5948 6.552008 AGGGAAAAAGTTCACATCAGGATTA 58.448 36.000 0.00 0.00 39.88 1.75
2412 5991 2.961526 TTCGTAGCTCCACTCCAATC 57.038 50.000 0.00 0.00 0.00 2.67
2420 5999 3.953712 TCTCACAATTTCGTAGCTCCA 57.046 42.857 0.00 0.00 0.00 3.86
2421 6000 4.433615 TGATCTCACAATTTCGTAGCTCC 58.566 43.478 0.00 0.00 0.00 4.70
2422 6001 4.505922 CCTGATCTCACAATTTCGTAGCTC 59.494 45.833 0.00 0.00 0.00 4.09
2423 6002 4.437239 CCTGATCTCACAATTTCGTAGCT 58.563 43.478 0.00 0.00 0.00 3.32
2424 6003 3.001736 GCCTGATCTCACAATTTCGTAGC 59.998 47.826 0.00 0.00 0.00 3.58
2492 6071 8.672815 GCCTCATGAATCTAATTAATAGCTTCC 58.327 37.037 0.00 0.00 36.40 3.46
2517 6096 1.480137 AGGACTCAGACATAGCAGTGC 59.520 52.381 7.13 7.13 0.00 4.40
2519 6098 3.093057 TGAGGACTCAGACATAGCAGT 57.907 47.619 0.00 0.00 34.14 4.40
2523 6102 5.850557 ACTGAATGAGGACTCAGACATAG 57.149 43.478 8.14 4.74 43.61 2.23
2597 6176 9.650539 ATCTGCACAATGTCTAATATGTCTATC 57.349 33.333 0.00 0.00 0.00 2.08
2601 6180 6.369005 GCATCTGCACAATGTCTAATATGTC 58.631 40.000 0.00 0.00 41.59 3.06
2637 6223 6.945938 ATACTACTCACAGTCACATACTCC 57.054 41.667 0.00 0.00 35.76 3.85
2640 6226 8.969267 GCAAATATACTACTCACAGTCACATAC 58.031 37.037 0.00 0.00 0.00 2.39
2641 6227 8.691797 TGCAAATATACTACTCACAGTCACATA 58.308 33.333 0.00 0.00 0.00 2.29
2642 6228 7.492669 GTGCAAATATACTACTCACAGTCACAT 59.507 37.037 0.00 0.00 0.00 3.21
2805 7392 3.256620 GTTGTGGTCAGCAACAAGC 57.743 52.632 3.65 0.00 43.91 4.01
2813 7400 2.033299 GTGGTCAACATGTTGTGGTCAG 59.967 50.000 31.99 10.49 41.16 3.51
2879 7466 4.555348 TTCGCGAATTGTGGTAGTTTTT 57.445 36.364 19.38 0.00 0.00 1.94
2880 7467 4.284485 GTTTCGCGAATTGTGGTAGTTTT 58.716 39.130 24.05 0.00 0.00 2.43
2881 7468 3.304190 GGTTTCGCGAATTGTGGTAGTTT 60.304 43.478 24.05 0.00 0.00 2.66
2882 7469 2.224784 GGTTTCGCGAATTGTGGTAGTT 59.775 45.455 24.05 0.00 0.00 2.24
2883 7470 1.802365 GGTTTCGCGAATTGTGGTAGT 59.198 47.619 24.05 0.00 0.00 2.73
2884 7471 1.201877 CGGTTTCGCGAATTGTGGTAG 60.202 52.381 24.05 4.93 0.00 3.18
2885 7472 0.791422 CGGTTTCGCGAATTGTGGTA 59.209 50.000 24.05 2.13 0.00 3.25
2886 7473 1.161563 ACGGTTTCGCGAATTGTGGT 61.162 50.000 24.05 13.26 40.63 4.16
2887 7474 0.724453 CACGGTTTCGCGAATTGTGG 60.724 55.000 27.29 17.26 40.63 4.17
2888 7475 0.041663 ACACGGTTTCGCGAATTGTG 60.042 50.000 30.42 30.42 40.63 3.33
2889 7476 0.233848 GACACGGTTTCGCGAATTGT 59.766 50.000 24.05 21.29 40.63 2.71
2890 7477 0.511221 AGACACGGTTTCGCGAATTG 59.489 50.000 24.05 18.41 40.63 2.32
2891 7478 2.068837 TAGACACGGTTTCGCGAATT 57.931 45.000 24.05 4.63 40.63 2.17
2892 7479 2.068837 TTAGACACGGTTTCGCGAAT 57.931 45.000 24.05 6.18 40.63 3.34
2893 7480 1.850377 TTTAGACACGGTTTCGCGAA 58.150 45.000 19.38 19.38 40.63 4.70
2894 7481 1.850377 TTTTAGACACGGTTTCGCGA 58.150 45.000 3.71 3.71 40.63 5.87
2895 7482 2.033492 AGTTTTTAGACACGGTTTCGCG 60.033 45.455 0.00 0.00 40.63 5.87
2896 7483 3.597377 AGTTTTTAGACACGGTTTCGC 57.403 42.857 0.00 0.00 40.63 4.70
2897 7484 4.507388 TGGTAGTTTTTAGACACGGTTTCG 59.493 41.667 0.00 0.00 43.02 3.46
2898 7485 5.525012 AGTGGTAGTTTTTAGACACGGTTTC 59.475 40.000 0.00 0.00 34.28 2.78
2899 7486 5.430886 AGTGGTAGTTTTTAGACACGGTTT 58.569 37.500 0.00 0.00 34.28 3.27
2900 7487 5.027293 AGTGGTAGTTTTTAGACACGGTT 57.973 39.130 0.00 0.00 34.28 4.44
2901 7488 4.677673 AGTGGTAGTTTTTAGACACGGT 57.322 40.909 0.00 0.00 34.28 4.83
2902 7489 5.996669 AAAGTGGTAGTTTTTAGACACGG 57.003 39.130 0.00 0.00 34.28 4.94
2903 7490 7.467557 TGTAAAGTGGTAGTTTTTAGACACG 57.532 36.000 0.00 0.00 34.28 4.49
2910 7497 8.661257 GCACAAATTTGTAAAGTGGTAGTTTTT 58.339 29.630 22.87 0.00 39.91 1.94
2911 7498 8.038351 AGCACAAATTTGTAAAGTGGTAGTTTT 58.962 29.630 22.87 0.00 39.91 2.43
2912 7499 7.491048 CAGCACAAATTTGTAAAGTGGTAGTTT 59.509 33.333 22.87 0.00 39.91 2.66
2913 7500 6.978080 CAGCACAAATTTGTAAAGTGGTAGTT 59.022 34.615 22.87 3.56 39.91 2.24
2914 7501 6.320164 TCAGCACAAATTTGTAAAGTGGTAGT 59.680 34.615 22.87 0.00 39.91 2.73
2915 7502 6.734137 TCAGCACAAATTTGTAAAGTGGTAG 58.266 36.000 22.87 9.01 39.91 3.18
2916 7503 6.701145 TCAGCACAAATTTGTAAAGTGGTA 57.299 33.333 22.87 2.10 39.91 3.25
2917 7504 5.590530 TCAGCACAAATTTGTAAAGTGGT 57.409 34.783 22.87 13.12 39.91 4.16
2918 7505 6.900568 TTTCAGCACAAATTTGTAAAGTGG 57.099 33.333 22.87 11.06 39.91 4.00
2919 7506 7.962917 AGTTTTCAGCACAAATTTGTAAAGTG 58.037 30.769 22.87 16.40 39.91 3.16
2920 7507 9.083080 GTAGTTTTCAGCACAAATTTGTAAAGT 57.917 29.630 22.87 21.03 39.91 2.66
2921 7508 8.539674 GGTAGTTTTCAGCACAAATTTGTAAAG 58.460 33.333 22.87 14.79 39.91 1.85
2922 7509 8.035394 TGGTAGTTTTCAGCACAAATTTGTAAA 58.965 29.630 22.87 16.30 39.91 2.01
2923 7510 7.489757 GTGGTAGTTTTCAGCACAAATTTGTAA 59.510 33.333 22.87 11.36 42.53 2.41
2924 7511 6.975772 GTGGTAGTTTTCAGCACAAATTTGTA 59.024 34.615 22.87 5.46 42.53 2.41
2925 7512 5.810074 GTGGTAGTTTTCAGCACAAATTTGT 59.190 36.000 18.13 18.13 42.53 2.83
2926 7513 6.042143 AGTGGTAGTTTTCAGCACAAATTTG 58.958 36.000 16.67 16.67 44.78 2.32
2927 7514 6.220726 AGTGGTAGTTTTCAGCACAAATTT 57.779 33.333 7.34 0.00 44.78 1.82
2928 7515 5.852282 AGTGGTAGTTTTCAGCACAAATT 57.148 34.783 7.34 0.00 44.78 1.82
2929 7516 5.852282 AAGTGGTAGTTTTCAGCACAAAT 57.148 34.783 7.34 0.00 44.78 2.32
2930 7517 5.652994 AAAGTGGTAGTTTTCAGCACAAA 57.347 34.783 7.34 0.00 44.78 2.83
2931 7518 5.652994 AAAAGTGGTAGTTTTCAGCACAA 57.347 34.783 7.34 0.00 44.78 3.33
2932 7519 5.184096 TGAAAAAGTGGTAGTTTTCAGCACA 59.816 36.000 7.32 0.00 44.63 4.57
2933 7520 5.646606 TGAAAAAGTGGTAGTTTTCAGCAC 58.353 37.500 7.32 0.00 44.63 4.40
2934 7521 5.906113 TGAAAAAGTGGTAGTTTTCAGCA 57.094 34.783 7.32 0.00 44.63 4.41
2937 7524 8.794553 TGTAAAGTGAAAAAGTGGTAGTTTTCA 58.205 29.630 7.32 7.32 46.31 2.69
2938 7525 9.628746 TTGTAAAGTGAAAAAGTGGTAGTTTTC 57.371 29.630 0.00 0.00 41.85 2.29
2939 7526 9.984190 TTTGTAAAGTGAAAAAGTGGTAGTTTT 57.016 25.926 0.00 0.00 32.49 2.43
2940 7527 9.984190 TTTTGTAAAGTGAAAAAGTGGTAGTTT 57.016 25.926 0.00 0.00 0.00 2.66
2941 7528 9.984190 TTTTTGTAAAGTGAAAAAGTGGTAGTT 57.016 25.926 0.00 0.00 0.00 2.24
2970 7557 3.069079 TCGGCTAAGTCACTCACTAGT 57.931 47.619 0.00 0.00 32.30 2.57
2971 7558 4.436242 TTTCGGCTAAGTCACTCACTAG 57.564 45.455 0.00 0.00 32.30 2.57
2972 7559 5.401531 AATTTCGGCTAAGTCACTCACTA 57.598 39.130 0.00 0.00 32.30 2.74
2973 7560 3.963428 ATTTCGGCTAAGTCACTCACT 57.037 42.857 0.00 0.00 36.64 3.41
2974 7561 6.979238 AGTATAATTTCGGCTAAGTCACTCAC 59.021 38.462 0.00 0.00 0.00 3.51
2975 7562 7.108841 AGTATAATTTCGGCTAAGTCACTCA 57.891 36.000 0.00 0.00 0.00 3.41
2976 7563 6.360148 CGAGTATAATTTCGGCTAAGTCACTC 59.640 42.308 0.00 0.00 33.39 3.51
2977 7564 6.039047 TCGAGTATAATTTCGGCTAAGTCACT 59.961 38.462 0.00 0.00 37.42 3.41
2978 7565 6.204359 TCGAGTATAATTTCGGCTAAGTCAC 58.796 40.000 0.00 0.00 37.42 3.67
2979 7566 6.381481 TCGAGTATAATTTCGGCTAAGTCA 57.619 37.500 0.00 0.00 37.42 3.41
2980 7567 7.870588 AATCGAGTATAATTTCGGCTAAGTC 57.129 36.000 0.00 0.00 37.42 3.01
2981 7568 9.355215 CATAATCGAGTATAATTTCGGCTAAGT 57.645 33.333 4.87 0.00 37.42 2.24
2982 7569 9.569167 TCATAATCGAGTATAATTTCGGCTAAG 57.431 33.333 4.87 0.00 37.42 2.18
2983 7570 9.350357 GTCATAATCGAGTATAATTTCGGCTAA 57.650 33.333 4.87 0.00 37.42 3.09
2984 7571 7.972277 GGTCATAATCGAGTATAATTTCGGCTA 59.028 37.037 4.87 0.00 37.42 3.93
2985 7572 6.812160 GGTCATAATCGAGTATAATTTCGGCT 59.188 38.462 4.87 0.00 37.42 5.52
2986 7573 6.588756 TGGTCATAATCGAGTATAATTTCGGC 59.411 38.462 4.87 0.00 37.42 5.54
2987 7574 7.275779 CCTGGTCATAATCGAGTATAATTTCGG 59.724 40.741 4.87 0.00 37.42 4.30
2988 7575 7.201444 GCCTGGTCATAATCGAGTATAATTTCG 60.201 40.741 4.87 0.00 38.13 3.46
2989 7576 7.819900 AGCCTGGTCATAATCGAGTATAATTTC 59.180 37.037 4.87 0.00 0.00 2.17
2990 7577 7.604164 CAGCCTGGTCATAATCGAGTATAATTT 59.396 37.037 4.87 0.00 0.00 1.82
2991 7578 7.099764 CAGCCTGGTCATAATCGAGTATAATT 58.900 38.462 4.87 0.00 0.00 1.40
2992 7579 6.211584 ACAGCCTGGTCATAATCGAGTATAAT 59.788 38.462 4.87 0.00 0.00 1.28
2993 7580 5.538813 ACAGCCTGGTCATAATCGAGTATAA 59.461 40.000 4.87 0.00 0.00 0.98
2994 7581 5.077564 ACAGCCTGGTCATAATCGAGTATA 58.922 41.667 4.87 0.00 0.00 1.47
2995 7582 3.898123 ACAGCCTGGTCATAATCGAGTAT 59.102 43.478 0.00 0.00 0.00 2.12
2996 7583 3.296854 ACAGCCTGGTCATAATCGAGTA 58.703 45.455 0.00 0.00 0.00 2.59
2997 7584 2.101582 GACAGCCTGGTCATAATCGAGT 59.898 50.000 0.00 0.00 37.73 4.18
2998 7585 2.546795 GGACAGCCTGGTCATAATCGAG 60.547 54.545 0.00 0.00 39.59 4.04
2999 7586 1.412710 GGACAGCCTGGTCATAATCGA 59.587 52.381 0.00 0.00 39.59 3.59
3000 7587 1.541233 GGGACAGCCTGGTCATAATCG 60.541 57.143 0.00 0.00 39.59 3.34
3001 7588 1.490490 TGGGACAGCCTGGTCATAATC 59.510 52.381 0.00 0.00 39.59 1.75
3002 7589 1.212935 GTGGGACAGCCTGGTCATAAT 59.787 52.381 0.00 0.00 41.80 1.28
3003 7590 0.618458 GTGGGACAGCCTGGTCATAA 59.382 55.000 0.00 0.00 41.80 1.90
3004 7591 0.546507 TGTGGGACAGCCTGGTCATA 60.547 55.000 0.00 0.00 41.80 2.15
3005 7592 1.847506 TGTGGGACAGCCTGGTCAT 60.848 57.895 0.00 0.00 41.80 3.06
3006 7593 2.447572 TGTGGGACAGCCTGGTCA 60.448 61.111 0.00 0.00 41.80 4.02
3007 7594 2.032681 GTGTGGGACAGCCTGGTC 59.967 66.667 0.00 0.00 41.80 4.02
3008 7595 0.840288 TATGTGTGGGACAGCCTGGT 60.840 55.000 0.00 0.00 41.80 4.00
3009 7596 0.327924 TTATGTGTGGGACAGCCTGG 59.672 55.000 0.00 0.00 41.80 4.45
3010 7597 1.742761 CTTATGTGTGGGACAGCCTG 58.257 55.000 0.00 0.00 41.80 4.85
3011 7598 0.035056 GCTTATGTGTGGGACAGCCT 60.035 55.000 0.00 0.00 41.80 4.58
3012 7599 1.369091 CGCTTATGTGTGGGACAGCC 61.369 60.000 0.00 0.00 41.80 4.85
3013 7600 0.673644 ACGCTTATGTGTGGGACAGC 60.674 55.000 0.00 0.00 41.80 4.40
3014 7601 1.464608 CAACGCTTATGTGTGGGACAG 59.535 52.381 0.00 0.00 41.80 3.51
3015 7602 1.070914 TCAACGCTTATGTGTGGGACA 59.929 47.619 0.00 0.00 39.53 4.02
3016 7603 1.463444 GTCAACGCTTATGTGTGGGAC 59.537 52.381 9.89 9.89 36.96 4.46
3017 7604 1.609580 GGTCAACGCTTATGTGTGGGA 60.610 52.381 0.00 0.00 36.96 4.37
3018 7605 0.802494 GGTCAACGCTTATGTGTGGG 59.198 55.000 0.00 0.00 36.96 4.61
3019 7606 0.442310 CGGTCAACGCTTATGTGTGG 59.558 55.000 0.00 0.00 36.96 4.17
3020 7607 3.947279 CGGTCAACGCTTATGTGTG 57.053 52.632 0.00 0.00 36.96 3.82
3030 7617 1.322338 CGGTAAATGTAGCGGTCAACG 59.678 52.381 6.61 0.00 45.32 4.10
3038 7625 6.598753 ACATGTCATAACGGTAAATGTAGC 57.401 37.500 0.00 0.00 0.00 3.58
3039 7626 7.384115 CCCTACATGTCATAACGGTAAATGTAG 59.616 40.741 19.18 19.18 42.61 2.74
3040 7627 7.211573 CCCTACATGTCATAACGGTAAATGTA 58.788 38.462 0.00 7.84 0.00 2.29
3041 7628 6.053005 CCCTACATGTCATAACGGTAAATGT 58.947 40.000 0.00 6.67 0.00 2.71
3042 7629 5.049680 GCCCTACATGTCATAACGGTAAATG 60.050 44.000 0.00 0.00 0.00 2.32
3043 7630 5.061179 GCCCTACATGTCATAACGGTAAAT 58.939 41.667 0.00 0.00 0.00 1.40
3044 7631 4.444536 GCCCTACATGTCATAACGGTAAA 58.555 43.478 0.00 0.00 0.00 2.01
3045 7632 3.181463 GGCCCTACATGTCATAACGGTAA 60.181 47.826 0.00 0.00 0.00 2.85
3046 7633 2.366266 GGCCCTACATGTCATAACGGTA 59.634 50.000 0.00 0.00 0.00 4.02
3047 7634 1.140252 GGCCCTACATGTCATAACGGT 59.860 52.381 0.00 0.00 0.00 4.83
3048 7635 1.542547 GGGCCCTACATGTCATAACGG 60.543 57.143 17.04 0.00 0.00 4.44
3049 7636 1.140052 TGGGCCCTACATGTCATAACG 59.860 52.381 25.70 0.00 0.00 3.18
3050 7637 2.172717 ACTGGGCCCTACATGTCATAAC 59.827 50.000 25.70 0.00 0.00 1.89
3051 7638 2.172505 CACTGGGCCCTACATGTCATAA 59.827 50.000 25.70 0.00 0.00 1.90
3052 7639 1.768275 CACTGGGCCCTACATGTCATA 59.232 52.381 25.70 0.00 0.00 2.15
3053 7640 0.548031 CACTGGGCCCTACATGTCAT 59.452 55.000 25.70 0.00 0.00 3.06
3054 7641 1.561769 CCACTGGGCCCTACATGTCA 61.562 60.000 25.70 0.00 0.00 3.58
3055 7642 1.224592 CCACTGGGCCCTACATGTC 59.775 63.158 25.70 0.00 0.00 3.06
3056 7643 1.541368 ACCACTGGGCCCTACATGT 60.541 57.895 25.70 11.02 37.90 3.21
3057 7644 1.224592 GACCACTGGGCCCTACATG 59.775 63.158 25.70 15.19 37.90 3.21
3058 7645 1.229820 TGACCACTGGGCCCTACAT 60.230 57.895 25.70 4.35 37.90 2.29
3059 7646 1.918293 CTGACCACTGGGCCCTACA 60.918 63.158 25.70 12.39 37.90 2.74
3060 7647 1.918800 ACTGACCACTGGGCCCTAC 60.919 63.158 25.70 8.30 37.90 3.18
3061 7648 1.918293 CACTGACCACTGGGCCCTA 60.918 63.158 25.70 8.68 37.90 3.53
3062 7649 3.252284 CACTGACCACTGGGCCCT 61.252 66.667 25.70 0.15 37.90 5.19
3063 7650 3.553095 GACACTGACCACTGGGCCC 62.553 68.421 17.59 17.59 37.90 5.80
3064 7651 2.032681 GACACTGACCACTGGGCC 59.967 66.667 0.00 0.00 37.90 5.80
3065 7652 2.032681 GGACACTGACCACTGGGC 59.967 66.667 0.00 0.00 37.90 5.36
3066 7653 2.146724 TGGGACACTGACCACTGGG 61.147 63.158 0.00 0.00 41.29 4.45
3067 7654 3.562250 TGGGACACTGACCACTGG 58.438 61.111 0.00 0.00 0.00 4.00
3077 7664 9.337396 TTGTATATTCACAATTAGATGGGACAC 57.663 33.333 0.00 0.00 35.50 3.67
3078 7665 9.913310 TTTGTATATTCACAATTAGATGGGACA 57.087 29.630 0.00 0.00 39.78 4.02
3102 7689 9.106070 CGGTTTGATTAGCCTAACTAGTAATTT 57.894 33.333 0.00 0.00 30.79 1.82
3103 7690 8.262933 ACGGTTTGATTAGCCTAACTAGTAATT 58.737 33.333 0.00 0.00 30.79 1.40
3104 7691 7.709613 CACGGTTTGATTAGCCTAACTAGTAAT 59.290 37.037 0.00 0.00 30.79 1.89
3105 7692 7.037438 CACGGTTTGATTAGCCTAACTAGTAA 58.963 38.462 0.00 0.00 30.79 2.24
3106 7693 6.567050 CACGGTTTGATTAGCCTAACTAGTA 58.433 40.000 0.00 0.00 30.79 1.82
3107 7694 5.416947 CACGGTTTGATTAGCCTAACTAGT 58.583 41.667 0.00 0.00 30.79 2.57
3108 7695 4.270325 GCACGGTTTGATTAGCCTAACTAG 59.730 45.833 0.00 0.00 30.79 2.57
3109 7696 4.186159 GCACGGTTTGATTAGCCTAACTA 58.814 43.478 0.00 0.00 0.00 2.24
3110 7697 3.007635 GCACGGTTTGATTAGCCTAACT 58.992 45.455 0.00 0.00 0.00 2.24
3111 7698 2.745281 TGCACGGTTTGATTAGCCTAAC 59.255 45.455 0.00 0.00 0.00 2.34
3112 7699 3.006940 CTGCACGGTTTGATTAGCCTAA 58.993 45.455 0.00 0.00 0.00 2.69
3113 7700 2.627945 CTGCACGGTTTGATTAGCCTA 58.372 47.619 0.00 0.00 0.00 3.93
3114 7701 1.453155 CTGCACGGTTTGATTAGCCT 58.547 50.000 0.00 0.00 0.00 4.58
3115 7702 0.451783 CCTGCACGGTTTGATTAGCC 59.548 55.000 0.00 0.00 0.00 3.93
3116 7703 0.179163 GCCTGCACGGTTTGATTAGC 60.179 55.000 4.45 0.00 34.25 3.09
3117 7704 0.451783 GGCCTGCACGGTTTGATTAG 59.548 55.000 0.00 0.00 34.25 1.73
3118 7705 0.963355 GGGCCTGCACGGTTTGATTA 60.963 55.000 0.84 0.00 34.25 1.75
3119 7706 2.275380 GGGCCTGCACGGTTTGATT 61.275 57.895 0.84 0.00 34.25 2.57
3120 7707 2.676471 GGGCCTGCACGGTTTGAT 60.676 61.111 0.84 0.00 34.25 2.57
3121 7708 4.196778 TGGGCCTGCACGGTTTGA 62.197 61.111 4.53 0.00 34.25 2.69
3122 7709 3.673484 CTGGGCCTGCACGGTTTG 61.673 66.667 4.53 0.00 34.25 2.93
3123 7710 4.204028 ACTGGGCCTGCACGGTTT 62.204 61.111 10.71 0.00 34.94 3.27
3124 7711 4.954970 CACTGGGCCTGCACGGTT 62.955 66.667 10.71 0.00 36.71 4.44
3128 7715 4.269523 TGACCACTGGGCCTGCAC 62.270 66.667 10.71 0.60 37.90 4.57
3129 7716 3.957586 CTGACCACTGGGCCTGCA 61.958 66.667 10.71 0.00 37.90 4.41
3130 7717 3.958860 ACTGACCACTGGGCCTGC 61.959 66.667 10.71 0.00 37.90 4.85
3131 7718 2.033141 CACTGACCACTGGGCCTG 59.967 66.667 9.11 9.11 37.90 4.85
3132 7719 2.056906 GAACACTGACCACTGGGCCT 62.057 60.000 4.53 0.00 37.90 5.19
3133 7720 1.600916 GAACACTGACCACTGGGCC 60.601 63.158 0.00 0.00 37.90 5.80
3134 7721 1.600916 GGAACACTGACCACTGGGC 60.601 63.158 0.00 0.00 37.90 5.36
3135 7722 1.836391 TGGAACACTGACCACTGGG 59.164 57.895 0.00 0.00 41.29 4.45



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.