Multiple sequence alignment - TraesCS5B01G241300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G241300 chr5B 100.000 2282 0 0 1 2282 421274613 421276894 0.000000e+00 4215.0
1 TraesCS5B01G241300 chr5B 84.066 546 51 18 843 1354 421187500 421188043 5.660000e-136 494.0
2 TraesCS5B01G241300 chr5D 89.816 1247 57 25 158 1386 356319714 356320908 0.000000e+00 1535.0
3 TraesCS5B01G241300 chr5D 92.776 526 29 5 1393 1914 356320851 356321371 0.000000e+00 752.0
4 TraesCS5B01G241300 chr5D 84.375 544 53 18 835 1354 356206525 356207060 2.620000e-139 505.0
5 TraesCS5B01G241300 chr5D 88.746 311 31 4 1968 2275 356321466 356321775 5.950000e-101 377.0
6 TraesCS5B01G241300 chr5D 93.258 89 2 3 28 116 356319633 356319717 6.620000e-26 128.0
7 TraesCS5B01G241300 chr5D 100.000 32 0 0 1 32 356319557 356319588 2.450000e-05 60.2
8 TraesCS5B01G241300 chr5A 84.816 652 66 19 747 1376 457915024 457915664 1.920000e-175 625.0
9 TraesCS5B01G241300 chr5A 77.824 717 91 41 1393 2055 457915612 457916314 4.600000e-102 381.0
10 TraesCS5B01G241300 chr5A 87.500 240 23 6 2049 2282 457916341 457916579 1.040000e-68 270.0
11 TraesCS5B01G241300 chr5A 83.406 229 26 7 860 1078 457905680 457905906 3.840000e-48 202.0
12 TraesCS5B01G241300 chr3B 74.815 270 45 15 1665 1915 28142819 28142554 1.440000e-17 100.0
13 TraesCS5B01G241300 chr1B 90.385 52 4 1 1952 2002 42317692 42317743 1.460000e-07 67.6
14 TraesCS5B01G241300 chr7D 97.297 37 1 0 1967 2003 564305851 564305815 1.890000e-06 63.9
15 TraesCS5B01G241300 chr3A 97.297 37 0 1 1694 1729 45122527 45122491 6.810000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G241300 chr5B 421274613 421276894 2281 False 4215.000000 4215 100.0000 1 2282 1 chr5B.!!$F2 2281
1 TraesCS5B01G241300 chr5B 421187500 421188043 543 False 494.000000 494 84.0660 843 1354 1 chr5B.!!$F1 511
2 TraesCS5B01G241300 chr5D 356319557 356321775 2218 False 570.440000 1535 92.9192 1 2275 5 chr5D.!!$F2 2274
3 TraesCS5B01G241300 chr5D 356206525 356207060 535 False 505.000000 505 84.3750 835 1354 1 chr5D.!!$F1 519
4 TraesCS5B01G241300 chr5A 457915024 457916579 1555 False 425.333333 625 83.3800 747 2282 3 chr5A.!!$F2 1535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 440 0.325296 TTAGAGATGCCCCCGTCAGT 60.325 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1351 1472 0.182061 ATGCATACACAGAGGCCAGG 59.818 55.0 5.01 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 182 9.159470 GAAAATTATACTACTCTTTTCGCATGC 57.841 33.333 7.91 7.91 0.00 4.06
134 183 5.883328 TTATACTACTCTTTTCGCATGCG 57.117 39.130 33.61 33.61 41.35 4.73
135 184 2.080286 ACTACTCTTTTCGCATGCGT 57.920 45.000 36.50 19.91 40.74 5.24
136 185 2.413837 ACTACTCTTTTCGCATGCGTT 58.586 42.857 36.50 16.64 40.74 4.84
137 186 2.157668 ACTACTCTTTTCGCATGCGTTG 59.842 45.455 36.50 23.93 40.74 4.10
145 194 3.142838 GCATGCGTTGCCTCCCAT 61.143 61.111 0.00 0.00 46.15 4.00
146 195 2.802792 CATGCGTTGCCTCCCATG 59.197 61.111 0.00 0.00 0.00 3.66
147 196 1.750018 CATGCGTTGCCTCCCATGA 60.750 57.895 0.00 0.00 37.78 3.07
148 197 1.001020 ATGCGTTGCCTCCCATGAA 60.001 52.632 0.00 0.00 0.00 2.57
149 198 1.033746 ATGCGTTGCCTCCCATGAAG 61.034 55.000 0.00 0.00 0.00 3.02
150 199 3.056313 GCGTTGCCTCCCATGAAGC 62.056 63.158 0.00 0.00 0.00 3.86
151 200 2.753966 CGTTGCCTCCCATGAAGCG 61.754 63.158 0.00 0.00 30.10 4.68
152 201 2.751436 TTGCCTCCCATGAAGCGC 60.751 61.111 0.00 0.00 30.10 5.92
153 202 3.272364 TTGCCTCCCATGAAGCGCT 62.272 57.895 2.64 2.64 30.10 5.92
154 203 2.439156 GCCTCCCATGAAGCGCTT 60.439 61.111 25.35 25.35 0.00 4.68
155 204 2.048603 GCCTCCCATGAAGCGCTTT 61.049 57.895 25.84 6.26 0.00 3.51
156 205 1.805254 CCTCCCATGAAGCGCTTTG 59.195 57.895 25.84 19.06 0.00 2.77
157 206 0.962356 CCTCCCATGAAGCGCTTTGT 60.962 55.000 25.84 13.24 0.00 2.83
158 207 0.883833 CTCCCATGAAGCGCTTTGTT 59.116 50.000 25.84 9.36 0.00 2.83
159 208 1.270550 CTCCCATGAAGCGCTTTGTTT 59.729 47.619 25.84 0.00 0.00 2.83
160 209 1.686052 TCCCATGAAGCGCTTTGTTTT 59.314 42.857 25.84 0.00 0.00 2.43
161 210 2.102252 TCCCATGAAGCGCTTTGTTTTT 59.898 40.909 25.84 0.00 0.00 1.94
162 211 2.221517 CCCATGAAGCGCTTTGTTTTTG 59.778 45.455 25.84 14.43 0.00 2.44
163 212 2.221517 CCATGAAGCGCTTTGTTTTTGG 59.778 45.455 25.84 18.92 0.00 3.28
164 213 1.285578 TGAAGCGCTTTGTTTTTGGC 58.714 45.000 25.84 8.45 0.00 4.52
165 214 0.581529 GAAGCGCTTTGTTTTTGGCC 59.418 50.000 25.84 3.00 0.00 5.36
166 215 1.151172 AAGCGCTTTGTTTTTGGCCG 61.151 50.000 18.98 0.00 0.00 6.13
167 216 1.880796 GCGCTTTGTTTTTGGCCGT 60.881 52.632 0.00 0.00 0.00 5.68
186 235 2.097685 CGTTTAGCTCGATCGCATTGAG 60.098 50.000 11.09 3.05 42.57 3.02
188 237 2.407521 TAGCTCGATCGCATTGAGAC 57.592 50.000 11.09 0.00 42.34 3.36
189 238 0.457443 AGCTCGATCGCATTGAGACA 59.543 50.000 11.09 0.00 42.34 3.41
190 239 1.068281 AGCTCGATCGCATTGAGACAT 59.932 47.619 11.09 0.00 42.34 3.06
191 240 1.863454 GCTCGATCGCATTGAGACATT 59.137 47.619 11.09 0.00 42.34 2.71
193 242 2.473816 TCGATCGCATTGAGACATTCC 58.526 47.619 11.09 0.00 0.00 3.01
194 243 2.159114 TCGATCGCATTGAGACATTCCA 60.159 45.455 11.09 0.00 0.00 3.53
221 276 4.980339 AAAGAATGCCCATTCCAGTTTT 57.020 36.364 15.36 8.21 46.28 2.43
268 326 4.159377 TGGCATTCAAGACAATTTCGTC 57.841 40.909 0.00 0.00 36.08 4.20
270 328 3.163594 GCATTCAAGACAATTTCGTCCG 58.836 45.455 0.00 0.00 36.52 4.79
292 350 4.932200 CGGTGTTGATCTTTAGCTTCTTCT 59.068 41.667 0.00 0.00 0.00 2.85
294 352 6.401581 CGGTGTTGATCTTTAGCTTCTTCTTC 60.402 42.308 0.00 0.00 0.00 2.87
295 353 6.128145 GGTGTTGATCTTTAGCTTCTTCTTCC 60.128 42.308 0.00 0.00 0.00 3.46
296 354 6.652900 GTGTTGATCTTTAGCTTCTTCTTCCT 59.347 38.462 0.00 0.00 0.00 3.36
297 355 6.652481 TGTTGATCTTTAGCTTCTTCTTCCTG 59.348 38.462 0.00 0.00 0.00 3.86
298 356 5.738909 TGATCTTTAGCTTCTTCTTCCTGG 58.261 41.667 0.00 0.00 0.00 4.45
299 357 5.485353 TGATCTTTAGCTTCTTCTTCCTGGA 59.515 40.000 0.00 0.00 0.00 3.86
309 367 6.239148 GCTTCTTCTTCCTGGAGAAAATGTTT 60.239 38.462 0.00 0.00 35.38 2.83
310 368 6.639632 TCTTCTTCCTGGAGAAAATGTTTG 57.360 37.500 0.00 0.00 35.38 2.93
325 383 9.393512 AGAAAATGTTTGACAAATGGATTTTCA 57.606 25.926 29.69 15.95 36.72 2.69
341 399 8.648698 TGGATTTTCACAAGGAAGATCAAATA 57.351 30.769 9.04 0.00 44.75 1.40
372 438 1.140852 CATTTAGAGATGCCCCCGTCA 59.859 52.381 0.00 0.00 0.00 4.35
373 439 0.830648 TTTAGAGATGCCCCCGTCAG 59.169 55.000 0.00 0.00 0.00 3.51
374 440 0.325296 TTAGAGATGCCCCCGTCAGT 60.325 55.000 0.00 0.00 0.00 3.41
375 441 0.755698 TAGAGATGCCCCCGTCAGTC 60.756 60.000 0.00 0.00 0.00 3.51
376 442 3.083997 AGATGCCCCCGTCAGTCC 61.084 66.667 0.00 0.00 0.00 3.85
377 443 4.530857 GATGCCCCCGTCAGTCCG 62.531 72.222 0.00 0.00 0.00 4.79
458 524 5.583854 ACCTTGACGAATCTCATGAGAATTG 59.416 40.000 28.40 24.75 41.36 2.32
495 561 3.444703 AGAGACTGCATGTTCGGTATC 57.555 47.619 0.00 0.00 34.65 2.24
496 562 2.101582 AGAGACTGCATGTTCGGTATCC 59.898 50.000 0.00 0.00 34.92 2.59
568 634 8.276060 TGTGCACGTTTAGAAAATAAACATTC 57.724 30.769 13.13 0.00 37.28 2.67
589 655 2.289002 CAGTTTCTTGACTGTGGCACTC 59.711 50.000 19.83 9.57 41.62 3.51
598 664 1.002430 ACTGTGGCACTCGAATGTGAT 59.998 47.619 19.83 0.00 40.12 3.06
599 665 2.079158 CTGTGGCACTCGAATGTGATT 58.921 47.619 19.83 0.00 40.12 2.57
600 666 2.485426 CTGTGGCACTCGAATGTGATTT 59.515 45.455 19.83 0.00 40.12 2.17
662 728 3.181476 GGTGCACTTCATGGTTGTTTCTT 60.181 43.478 17.98 0.00 0.00 2.52
717 783 6.402550 CCGTCCATTTGTTCTAATCTCTGTTG 60.403 42.308 0.00 0.00 0.00 3.33
720 786 6.716628 TCCATTTGTTCTAATCTCTGTTGCTT 59.283 34.615 0.00 0.00 0.00 3.91
782 849 4.101741 AGCTGGCTACCTTCCTAGTTTATG 59.898 45.833 0.00 0.00 0.00 1.90
798 865 2.623418 TATGCATACCCCTCGGATCT 57.377 50.000 1.16 0.00 0.00 2.75
799 866 0.979665 ATGCATACCCCTCGGATCTG 59.020 55.000 0.00 0.00 0.00 2.90
800 867 1.121407 TGCATACCCCTCGGATCTGG 61.121 60.000 0.62 0.00 0.00 3.86
801 868 0.832135 GCATACCCCTCGGATCTGGA 60.832 60.000 0.62 0.00 0.00 3.86
802 869 1.261480 CATACCCCTCGGATCTGGAG 58.739 60.000 0.62 4.63 0.00 3.86
837 904 8.519799 TGTCTTGTCCATCCCTTAAAATATTC 57.480 34.615 0.00 0.00 0.00 1.75
940 1020 4.081972 AGAGTAGTAGCATTCCAGTGTGTG 60.082 45.833 0.00 0.00 0.00 3.82
1097 1203 3.231298 GGCGAGGAGGCTAATGGT 58.769 61.111 0.00 0.00 42.90 3.55
1115 1221 2.032634 TGGCGTCGGCAAAGATCAC 61.033 57.895 20.25 0.00 42.47 3.06
1326 1447 4.253685 GGCACAGAGCTCTTGTGTTTATA 58.746 43.478 30.03 0.00 44.79 0.98
1327 1448 4.878397 GGCACAGAGCTCTTGTGTTTATAT 59.122 41.667 30.03 3.68 44.79 0.86
1328 1449 5.220739 GGCACAGAGCTCTTGTGTTTATATG 60.221 44.000 30.03 15.25 44.79 1.78
1329 1450 5.582269 GCACAGAGCTCTTGTGTTTATATGA 59.418 40.000 30.03 0.00 41.15 2.15
1330 1451 6.092670 GCACAGAGCTCTTGTGTTTATATGAA 59.907 38.462 30.03 0.00 41.15 2.57
1331 1452 7.459486 CACAGAGCTCTTGTGTTTATATGAAC 58.541 38.462 25.65 3.48 0.00 3.18
1332 1453 7.332926 CACAGAGCTCTTGTGTTTATATGAACT 59.667 37.037 25.65 0.00 0.00 3.01
1333 1454 7.332926 ACAGAGCTCTTGTGTTTATATGAACTG 59.667 37.037 15.27 0.00 0.00 3.16
1334 1455 7.332926 CAGAGCTCTTGTGTTTATATGAACTGT 59.667 37.037 15.27 0.00 0.00 3.55
1335 1456 7.880195 AGAGCTCTTGTGTTTATATGAACTGTT 59.120 33.333 11.45 0.00 0.00 3.16
1336 1457 8.034058 AGCTCTTGTGTTTATATGAACTGTTC 57.966 34.615 13.49 13.49 0.00 3.18
1337 1458 7.880195 AGCTCTTGTGTTTATATGAACTGTTCT 59.120 33.333 20.18 9.31 0.00 3.01
1338 1459 8.171840 GCTCTTGTGTTTATATGAACTGTTCTC 58.828 37.037 20.18 0.00 0.00 2.87
1339 1460 9.429359 CTCTTGTGTTTATATGAACTGTTCTCT 57.571 33.333 20.18 10.82 0.00 3.10
1340 1461 9.778741 TCTTGTGTTTATATGAACTGTTCTCTT 57.221 29.630 20.18 8.77 0.00 2.85
1341 1462 9.817365 CTTGTGTTTATATGAACTGTTCTCTTG 57.183 33.333 20.18 0.00 0.00 3.02
1342 1463 9.554395 TTGTGTTTATATGAACTGTTCTCTTGA 57.446 29.630 20.18 1.25 0.00 3.02
1343 1464 9.725019 TGTGTTTATATGAACTGTTCTCTTGAT 57.275 29.630 20.18 8.48 0.00 2.57
1346 1467 9.907576 GTTTATATGAACTGTTCTCTTGATTCG 57.092 33.333 20.18 0.00 0.00 3.34
1347 1468 9.653287 TTTATATGAACTGTTCTCTTGATTCGT 57.347 29.630 20.18 0.00 0.00 3.85
1350 1471 9.823647 ATATGAACTGTTCTCTTGATTCGTATT 57.176 29.630 20.18 0.00 28.51 1.89
1351 1472 7.582435 TGAACTGTTCTCTTGATTCGTATTC 57.418 36.000 20.18 0.00 0.00 1.75
1352 1473 6.590292 TGAACTGTTCTCTTGATTCGTATTCC 59.410 38.462 20.18 0.00 0.00 3.01
1353 1474 6.287589 ACTGTTCTCTTGATTCGTATTCCT 57.712 37.500 0.00 0.00 0.00 3.36
1354 1475 6.102663 ACTGTTCTCTTGATTCGTATTCCTG 58.897 40.000 0.00 0.00 0.00 3.86
1355 1476 5.419542 TGTTCTCTTGATTCGTATTCCTGG 58.580 41.667 0.00 0.00 0.00 4.45
1356 1477 4.060038 TCTCTTGATTCGTATTCCTGGC 57.940 45.455 0.00 0.00 0.00 4.85
1357 1478 3.134458 CTCTTGATTCGTATTCCTGGCC 58.866 50.000 0.00 0.00 0.00 5.36
1358 1479 2.771943 TCTTGATTCGTATTCCTGGCCT 59.228 45.455 3.32 0.00 0.00 5.19
1359 1480 2.910688 TGATTCGTATTCCTGGCCTC 57.089 50.000 3.32 0.00 0.00 4.70
1360 1481 2.398588 TGATTCGTATTCCTGGCCTCT 58.601 47.619 3.32 0.00 0.00 3.69
1361 1482 2.103094 TGATTCGTATTCCTGGCCTCTG 59.897 50.000 3.32 0.00 0.00 3.35
1362 1483 1.568504 TTCGTATTCCTGGCCTCTGT 58.431 50.000 3.32 0.00 0.00 3.41
1363 1484 0.824109 TCGTATTCCTGGCCTCTGTG 59.176 55.000 3.32 0.00 0.00 3.66
1364 1485 0.537188 CGTATTCCTGGCCTCTGTGT 59.463 55.000 3.32 0.00 0.00 3.72
1365 1486 1.754803 CGTATTCCTGGCCTCTGTGTA 59.245 52.381 3.32 0.00 0.00 2.90
1366 1487 2.365617 CGTATTCCTGGCCTCTGTGTAT 59.634 50.000 3.32 0.00 0.00 2.29
1367 1488 3.733337 GTATTCCTGGCCTCTGTGTATG 58.267 50.000 3.32 0.00 0.00 2.39
1368 1489 0.253044 TTCCTGGCCTCTGTGTATGC 59.747 55.000 3.32 0.00 0.00 3.14
1369 1490 0.909133 TCCTGGCCTCTGTGTATGCA 60.909 55.000 3.32 0.00 0.00 3.96
1370 1491 0.182061 CCTGGCCTCTGTGTATGCAT 59.818 55.000 3.32 3.79 0.00 3.96
1371 1492 1.306148 CTGGCCTCTGTGTATGCATG 58.694 55.000 10.16 0.00 0.00 4.06
1372 1493 0.749091 TGGCCTCTGTGTATGCATGC 60.749 55.000 11.82 11.82 0.00 4.06
1373 1494 0.749091 GGCCTCTGTGTATGCATGCA 60.749 55.000 25.04 25.04 0.00 3.96
1374 1495 0.661552 GCCTCTGTGTATGCATGCAG 59.338 55.000 26.69 17.31 0.00 4.41
1375 1496 1.744798 GCCTCTGTGTATGCATGCAGA 60.745 52.381 26.69 19.87 36.65 4.26
1376 1497 2.847441 CCTCTGTGTATGCATGCAGAT 58.153 47.619 26.69 12.95 37.36 2.90
1377 1498 2.548480 CCTCTGTGTATGCATGCAGATG 59.452 50.000 26.69 15.44 37.36 2.90
1390 1511 2.251409 GCAGATGCAGAGCCTATGAA 57.749 50.000 0.00 0.00 41.59 2.57
1391 1512 2.144730 GCAGATGCAGAGCCTATGAAG 58.855 52.381 0.00 0.00 41.59 3.02
1423 1549 5.415701 TGTTCTCTTGATTTGTATTCCTGGC 59.584 40.000 0.00 0.00 0.00 4.85
1424 1550 4.526970 TCTCTTGATTTGTATTCCTGGCC 58.473 43.478 0.00 0.00 0.00 5.36
1425 1551 4.018506 TCTCTTGATTTGTATTCCTGGCCA 60.019 41.667 4.71 4.71 0.00 5.36
1493 1619 9.838339 ATGTGTATATGGTTTTAGAAAGAGAGG 57.162 33.333 0.00 0.00 0.00 3.69
1522 1648 4.340894 ACGTGTGATGTGTATTTCATGC 57.659 40.909 0.00 0.00 0.00 4.06
1526 1652 5.327091 GTGTGATGTGTATTTCATGCTCAC 58.673 41.667 0.00 0.00 34.84 3.51
1677 1810 6.318628 TCGTATCATTGTTTTTCGAAATGGG 58.681 36.000 12.12 0.00 33.14 4.00
1731 1864 6.546772 AGTTGTCCGGTTAATTAGAAAAACCA 59.453 34.615 0.00 0.00 42.31 3.67
1735 1868 7.068470 TGTCCGGTTAATTAGAAAAACCAAACT 59.932 33.333 0.00 0.00 42.31 2.66
1747 1881 7.847096 AGAAAAACCAAACTAAACCAGATTGT 58.153 30.769 0.00 0.00 35.75 2.71
1770 1904 6.715718 TGTCCAGTTAATTATGAAAAACCGGA 59.284 34.615 9.46 0.00 0.00 5.14
1797 1933 1.078709 CCGTCACAATCGTTGAGCAT 58.921 50.000 5.01 0.00 0.00 3.79
1818 1954 5.221641 GCATCACACATAAGATACCCCACTA 60.222 44.000 0.00 0.00 0.00 2.74
1842 1978 2.177016 ACCACTTTAAAGAGGGCCTTGT 59.823 45.455 28.37 9.73 40.57 3.16
1848 1984 4.657814 TTAAAGAGGGCCTTGTTGAGAT 57.342 40.909 7.89 0.00 34.79 2.75
1854 1990 1.340017 GGGCCTTGTTGAGATAGCACA 60.340 52.381 0.84 0.00 0.00 4.57
1893 2046 4.895889 TCACTCTCATCGTCATCCCTAAAT 59.104 41.667 0.00 0.00 0.00 1.40
1909 2062 4.003648 CCTAAATCCTGAGCAAACGACTT 58.996 43.478 0.00 0.00 0.00 3.01
1923 2098 0.031585 CGACTTCGACTCAACCCACA 59.968 55.000 0.00 0.00 43.02 4.17
1925 2100 1.068741 GACTTCGACTCAACCCACACT 59.931 52.381 0.00 0.00 0.00 3.55
1936 2111 2.097110 ACCCACACTGTAGAGACCAA 57.903 50.000 0.00 0.00 0.00 3.67
1940 2115 2.289072 CCACACTGTAGAGACCAAGTGG 60.289 54.545 6.61 0.00 39.25 4.00
1942 2117 3.069586 CACACTGTAGAGACCAAGTGGAA 59.930 47.826 3.83 0.00 38.94 3.53
1960 2177 6.283161 GTGGAACTATATAAAAGTCCACGC 57.717 41.667 13.71 5.51 36.43 5.34
1965 2182 2.702592 TATAAAAGTCCACGCCAGGG 57.297 50.000 0.00 0.00 0.00 4.45
1988 2205 2.425592 CCACCTGCGACCAGACAA 59.574 61.111 0.00 0.00 41.77 3.18
1995 2213 3.414700 CGACCAGACAACGCAGCC 61.415 66.667 0.00 0.00 0.00 4.85
2007 2225 4.162690 GCAGCCCCGACTCCGATT 62.163 66.667 0.00 0.00 38.22 3.34
2010 2228 0.177141 CAGCCCCGACTCCGATTAAA 59.823 55.000 0.00 0.00 38.22 1.52
2050 2268 2.985282 CGGCTGGCACACAACCAT 60.985 61.111 1.08 0.00 34.92 3.55
2061 2312 4.218417 GGCACACAACCATAGAAGTTCATT 59.782 41.667 5.50 0.00 0.00 2.57
2075 2327 2.488153 AGTTCATTTAGCCAGGAAACGC 59.512 45.455 0.00 0.00 0.00 4.84
2107 2359 1.607178 CAAAGTGCATGCAGGGGGA 60.607 57.895 23.41 0.00 0.00 4.81
2114 2366 1.304713 CATGCAGGGGGAACAAGCT 60.305 57.895 0.00 0.00 0.00 3.74
2152 2405 0.179181 CGTGGCTGTCAATGCACATC 60.179 55.000 0.00 0.00 0.00 3.06
2154 2407 0.883153 TGGCTGTCAATGCACATCAC 59.117 50.000 0.00 0.00 0.00 3.06
2208 2463 5.930135 ACGATATCAGGAAGGCATAAAGTT 58.070 37.500 3.12 0.00 0.00 2.66
2269 2525 2.796593 GCATGGCTGTCAACAAAAGAAC 59.203 45.455 0.00 0.00 0.00 3.01
2275 2531 3.068024 GCTGTCAACAAAAGAACCCATGA 59.932 43.478 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.420967 GGTAATTACCGCCACCATGAGT 60.421 50.000 18.70 0.00 36.50 3.41
56 105 2.600867 GTGATCGAAGCGAAGAAGAAGG 59.399 50.000 0.00 0.00 39.99 3.46
63 112 5.957910 ATAAAGAAGTGATCGAAGCGAAG 57.042 39.130 0.00 0.00 39.99 3.79
64 113 6.721571 AAATAAAGAAGTGATCGAAGCGAA 57.278 33.333 0.00 0.00 39.99 4.70
65 114 6.255020 GGTAAATAAAGAAGTGATCGAAGCGA 59.745 38.462 0.00 0.00 41.13 4.93
66 115 6.255887 AGGTAAATAAAGAAGTGATCGAAGCG 59.744 38.462 0.00 0.00 0.00 4.68
107 156 9.159470 GCATGCGAAAAGAGTAGTATAATTTTC 57.841 33.333 0.00 0.00 36.81 2.29
116 165 2.080286 ACGCATGCGAAAAGAGTAGT 57.920 45.000 43.72 16.84 42.83 2.73
117 166 2.762472 CAACGCATGCGAAAAGAGTAG 58.238 47.619 43.72 18.24 42.83 2.57
118 167 1.136085 GCAACGCATGCGAAAAGAGTA 60.136 47.619 43.72 0.00 46.87 2.59
119 168 0.385974 GCAACGCATGCGAAAAGAGT 60.386 50.000 43.72 19.23 46.87 3.24
121 170 4.531708 GCAACGCATGCGAAAAGA 57.468 50.000 43.72 0.00 46.87 2.52
130 179 1.001020 TTCATGGGAGGCAACGCAT 60.001 52.632 8.03 8.03 42.57 4.73
131 180 1.675310 CTTCATGGGAGGCAACGCA 60.675 57.895 0.00 4.31 46.39 5.24
132 181 3.056313 GCTTCATGGGAGGCAACGC 62.056 63.158 0.00 0.00 44.87 4.84
133 182 2.753966 CGCTTCATGGGAGGCAACG 61.754 63.158 0.00 0.00 45.73 4.10
134 183 3.056313 GCGCTTCATGGGAGGCAAC 62.056 63.158 0.00 0.00 45.73 4.17
135 184 2.751436 GCGCTTCATGGGAGGCAA 60.751 61.111 0.00 0.00 45.73 4.52
136 185 2.769652 AAAGCGCTTCATGGGAGGCA 62.770 55.000 25.24 0.00 45.73 4.75
137 186 2.048603 AAAGCGCTTCATGGGAGGC 61.049 57.895 25.24 0.00 42.30 4.70
138 187 0.962356 ACAAAGCGCTTCATGGGAGG 60.962 55.000 25.24 8.11 0.00 4.30
139 188 0.883833 AACAAAGCGCTTCATGGGAG 59.116 50.000 25.24 9.81 0.00 4.30
140 189 1.327303 AAACAAAGCGCTTCATGGGA 58.673 45.000 25.24 0.00 0.00 4.37
141 190 2.153366 AAAACAAAGCGCTTCATGGG 57.847 45.000 25.24 12.96 0.00 4.00
142 191 2.221517 CCAAAAACAAAGCGCTTCATGG 59.778 45.455 25.24 19.46 0.00 3.66
143 192 2.348779 GCCAAAAACAAAGCGCTTCATG 60.349 45.455 25.24 21.11 0.00 3.07
144 193 1.866601 GCCAAAAACAAAGCGCTTCAT 59.133 42.857 25.24 11.95 0.00 2.57
145 194 1.285578 GCCAAAAACAAAGCGCTTCA 58.714 45.000 25.24 0.00 0.00 3.02
146 195 0.581529 GGCCAAAAACAAAGCGCTTC 59.418 50.000 25.24 7.15 0.00 3.86
147 196 1.151172 CGGCCAAAAACAAAGCGCTT 61.151 50.000 18.98 18.98 0.00 4.68
148 197 1.591327 CGGCCAAAAACAAAGCGCT 60.591 52.632 2.64 2.64 0.00 5.92
149 198 1.425267 AACGGCCAAAAACAAAGCGC 61.425 50.000 2.24 0.00 0.00 5.92
150 199 1.003108 AAACGGCCAAAAACAAAGCG 58.997 45.000 2.24 0.00 0.00 4.68
151 200 2.033236 GCTAAACGGCCAAAAACAAAGC 60.033 45.455 2.24 0.00 0.00 3.51
152 201 3.453424 AGCTAAACGGCCAAAAACAAAG 58.547 40.909 2.24 0.00 0.00 2.77
153 202 3.449632 GAGCTAAACGGCCAAAAACAAA 58.550 40.909 2.24 0.00 0.00 2.83
154 203 2.541999 CGAGCTAAACGGCCAAAAACAA 60.542 45.455 2.24 0.00 0.00 2.83
155 204 1.002251 CGAGCTAAACGGCCAAAAACA 60.002 47.619 2.24 0.00 0.00 2.83
156 205 1.264826 TCGAGCTAAACGGCCAAAAAC 59.735 47.619 2.24 0.00 0.00 2.43
157 206 1.595466 TCGAGCTAAACGGCCAAAAA 58.405 45.000 2.24 0.00 0.00 1.94
158 207 1.735571 GATCGAGCTAAACGGCCAAAA 59.264 47.619 2.24 0.00 0.00 2.44
159 208 1.365699 GATCGAGCTAAACGGCCAAA 58.634 50.000 2.24 0.00 0.00 3.28
160 209 0.804544 CGATCGAGCTAAACGGCCAA 60.805 55.000 10.26 0.00 0.00 4.52
161 210 1.226859 CGATCGAGCTAAACGGCCA 60.227 57.895 10.26 0.00 0.00 5.36
162 211 2.586773 GCGATCGAGCTAAACGGCC 61.587 63.158 21.57 0.00 0.00 6.13
163 212 1.215655 ATGCGATCGAGCTAAACGGC 61.216 55.000 21.57 0.00 38.13 5.68
164 213 1.071239 CAATGCGATCGAGCTAAACGG 60.071 52.381 21.57 0.00 38.13 4.44
165 214 1.852280 TCAATGCGATCGAGCTAAACG 59.148 47.619 21.57 0.00 38.13 3.60
166 215 3.060873 GTCTCAATGCGATCGAGCTAAAC 60.061 47.826 21.57 4.26 38.13 2.01
167 216 3.116300 GTCTCAATGCGATCGAGCTAAA 58.884 45.455 21.57 0.00 38.13 1.85
186 235 5.869344 GGGCATTCTTTTAAACTGGAATGTC 59.131 40.000 23.57 22.55 44.82 3.06
188 237 5.792741 TGGGCATTCTTTTAAACTGGAATG 58.207 37.500 21.20 21.20 44.31 2.67
189 238 6.625532 ATGGGCATTCTTTTAAACTGGAAT 57.374 33.333 0.00 0.00 0.00 3.01
190 239 6.432403 AATGGGCATTCTTTTAAACTGGAA 57.568 33.333 0.00 0.00 0.00 3.53
191 240 5.046663 GGAATGGGCATTCTTTTAAACTGGA 60.047 40.000 0.00 0.00 44.90 3.86
193 242 5.792741 TGGAATGGGCATTCTTTTAAACTG 58.207 37.500 0.00 0.00 44.90 3.16
194 243 5.543790 ACTGGAATGGGCATTCTTTTAAACT 59.456 36.000 0.00 0.00 44.90 2.66
268 326 3.600388 AGAAGCTAAAGATCAACACCGG 58.400 45.455 0.00 0.00 0.00 5.28
270 328 6.128145 GGAAGAAGAAGCTAAAGATCAACACC 60.128 42.308 0.00 0.00 0.00 4.16
292 350 6.537453 TTTGTCAAACATTTTCTCCAGGAA 57.463 33.333 0.00 0.00 0.00 3.36
294 352 5.697633 CCATTTGTCAAACATTTTCTCCAGG 59.302 40.000 0.00 0.00 0.00 4.45
295 353 6.514947 TCCATTTGTCAAACATTTTCTCCAG 58.485 36.000 0.00 0.00 0.00 3.86
296 354 6.477053 TCCATTTGTCAAACATTTTCTCCA 57.523 33.333 0.00 0.00 0.00 3.86
297 355 7.967890 AATCCATTTGTCAAACATTTTCTCC 57.032 32.000 0.00 0.00 0.00 3.71
298 356 9.868389 GAAAATCCATTTGTCAAACATTTTCTC 57.132 29.630 24.91 13.59 34.85 2.87
299 357 9.393512 TGAAAATCCATTTGTCAAACATTTTCT 57.606 25.926 27.94 12.95 36.45 2.52
309 367 6.323482 TCTTCCTTGTGAAAATCCATTTGTCA 59.677 34.615 0.00 0.00 31.06 3.58
310 368 6.748132 TCTTCCTTGTGAAAATCCATTTGTC 58.252 36.000 0.00 0.00 31.06 3.18
341 399 8.860088 GGGGCATCTCTAAATGTTTATTGTTAT 58.140 33.333 0.00 0.00 0.00 1.89
372 438 3.039988 CGACACCAGTGACGGACT 58.960 61.111 13.54 0.00 42.99 3.85
373 439 2.733593 GCGACACCAGTGACGGAC 60.734 66.667 20.65 5.02 45.78 4.79
374 440 3.986006 GGCGACACCAGTGACGGA 61.986 66.667 20.65 0.00 45.78 4.69
458 524 6.073167 GCAGTCTCTTACACTAAACCTTTTCC 60.073 42.308 0.00 0.00 0.00 3.13
495 561 1.135083 AGAAGAGCAATACACGGACGG 60.135 52.381 0.00 0.00 0.00 4.79
496 562 2.279582 AGAAGAGCAATACACGGACG 57.720 50.000 0.00 0.00 0.00 4.79
497 563 3.994392 TCAAAGAAGAGCAATACACGGAC 59.006 43.478 0.00 0.00 0.00 4.79
498 564 4.265904 TCAAAGAAGAGCAATACACGGA 57.734 40.909 0.00 0.00 0.00 4.69
499 565 4.670221 GCTTCAAAGAAGAGCAATACACGG 60.670 45.833 10.72 0.00 0.00 4.94
500 566 4.153117 AGCTTCAAAGAAGAGCAATACACG 59.847 41.667 10.72 0.00 0.00 4.49
501 567 5.411053 AGAGCTTCAAAGAAGAGCAATACAC 59.589 40.000 10.72 0.00 0.00 2.90
502 568 5.555017 AGAGCTTCAAAGAAGAGCAATACA 58.445 37.500 10.72 0.00 0.00 2.29
503 569 6.493449 AAGAGCTTCAAAGAAGAGCAATAC 57.507 37.500 10.72 0.00 0.00 1.89
504 570 7.390027 ACTAAGAGCTTCAAAGAAGAGCAATA 58.610 34.615 10.72 0.00 0.00 1.90
505 571 6.237154 ACTAAGAGCTTCAAAGAAGAGCAAT 58.763 36.000 10.72 0.00 0.00 3.56
506 572 5.615289 ACTAAGAGCTTCAAAGAAGAGCAA 58.385 37.500 10.72 0.00 0.00 3.91
717 783 5.412904 GCATCCAAAGGGTACTATATGAAGC 59.587 44.000 0.00 0.00 34.93 3.86
720 786 4.562757 GCGCATCCAAAGGGTACTATATGA 60.563 45.833 0.30 0.00 34.93 2.15
782 849 0.832135 TCCAGATCCGAGGGGTATGC 60.832 60.000 0.00 0.00 33.83 3.14
798 865 4.262036 GGACAAGACATATCGCATACTCCA 60.262 45.833 0.00 0.00 0.00 3.86
799 866 4.238514 GGACAAGACATATCGCATACTCC 58.761 47.826 0.00 0.00 0.00 3.85
800 867 4.871513 TGGACAAGACATATCGCATACTC 58.128 43.478 0.00 0.00 0.00 2.59
801 868 4.937201 TGGACAAGACATATCGCATACT 57.063 40.909 0.00 0.00 0.00 2.12
802 869 4.627467 GGATGGACAAGACATATCGCATAC 59.373 45.833 0.00 0.00 0.00 2.39
940 1020 4.347453 CACAGGGTTTGCGGCAGC 62.347 66.667 1.67 0.31 45.41 5.25
1092 1198 2.596046 TTTGCCGACGCCACCATT 60.596 55.556 0.00 0.00 0.00 3.16
1097 1203 2.032634 GTGATCTTTGCCGACGCCA 61.033 57.895 0.00 0.00 0.00 5.69
1158 1267 1.221021 GGCACCACTAGCAGTACCC 59.779 63.158 0.00 0.00 0.00 3.69
1182 1294 4.164252 GTCGCCATCTTCGACGTT 57.836 55.556 0.00 0.00 45.19 3.99
1326 1447 7.278868 GGAATACGAATCAAGAGAACAGTTCAT 59.721 37.037 15.85 0.66 0.00 2.57
1327 1448 6.590292 GGAATACGAATCAAGAGAACAGTTCA 59.410 38.462 15.85 0.00 0.00 3.18
1328 1449 6.814146 AGGAATACGAATCAAGAGAACAGTTC 59.186 38.462 5.00 5.00 0.00 3.01
1329 1450 6.591834 CAGGAATACGAATCAAGAGAACAGTT 59.408 38.462 0.00 0.00 0.00 3.16
1330 1451 6.102663 CAGGAATACGAATCAAGAGAACAGT 58.897 40.000 0.00 0.00 0.00 3.55
1331 1452 5.521735 CCAGGAATACGAATCAAGAGAACAG 59.478 44.000 0.00 0.00 0.00 3.16
1332 1453 5.419542 CCAGGAATACGAATCAAGAGAACA 58.580 41.667 0.00 0.00 0.00 3.18
1333 1454 4.271291 GCCAGGAATACGAATCAAGAGAAC 59.729 45.833 0.00 0.00 0.00 3.01
1334 1455 4.442706 GCCAGGAATACGAATCAAGAGAA 58.557 43.478 0.00 0.00 0.00 2.87
1335 1456 3.181465 GGCCAGGAATACGAATCAAGAGA 60.181 47.826 0.00 0.00 0.00 3.10
1336 1457 3.134458 GGCCAGGAATACGAATCAAGAG 58.866 50.000 0.00 0.00 0.00 2.85
1337 1458 2.771943 AGGCCAGGAATACGAATCAAGA 59.228 45.455 5.01 0.00 0.00 3.02
1338 1459 3.134458 GAGGCCAGGAATACGAATCAAG 58.866 50.000 5.01 0.00 0.00 3.02
1339 1460 2.771943 AGAGGCCAGGAATACGAATCAA 59.228 45.455 5.01 0.00 0.00 2.57
1340 1461 2.103094 CAGAGGCCAGGAATACGAATCA 59.897 50.000 5.01 0.00 0.00 2.57
1341 1462 2.103263 ACAGAGGCCAGGAATACGAATC 59.897 50.000 5.01 0.00 0.00 2.52
1342 1463 2.119495 ACAGAGGCCAGGAATACGAAT 58.881 47.619 5.01 0.00 0.00 3.34
1343 1464 1.207089 CACAGAGGCCAGGAATACGAA 59.793 52.381 5.01 0.00 0.00 3.85
1344 1465 0.824109 CACAGAGGCCAGGAATACGA 59.176 55.000 5.01 0.00 0.00 3.43
1345 1466 0.537188 ACACAGAGGCCAGGAATACG 59.463 55.000 5.01 0.00 0.00 3.06
1346 1467 3.733337 CATACACAGAGGCCAGGAATAC 58.267 50.000 5.01 0.00 0.00 1.89
1347 1468 2.104792 GCATACACAGAGGCCAGGAATA 59.895 50.000 5.01 0.00 0.00 1.75
1348 1469 1.133976 GCATACACAGAGGCCAGGAAT 60.134 52.381 5.01 0.00 0.00 3.01
1349 1470 0.253044 GCATACACAGAGGCCAGGAA 59.747 55.000 5.01 0.00 0.00 3.36
1350 1471 0.909133 TGCATACACAGAGGCCAGGA 60.909 55.000 5.01 0.00 0.00 3.86
1351 1472 0.182061 ATGCATACACAGAGGCCAGG 59.818 55.000 5.01 0.00 0.00 4.45
1352 1473 1.306148 CATGCATACACAGAGGCCAG 58.694 55.000 5.01 0.00 0.00 4.85
1353 1474 0.749091 GCATGCATACACAGAGGCCA 60.749 55.000 14.21 0.00 0.00 5.36
1354 1475 0.749091 TGCATGCATACACAGAGGCC 60.749 55.000 18.46 0.00 0.00 5.19
1355 1476 0.661552 CTGCATGCATACACAGAGGC 59.338 55.000 22.97 6.15 31.67 4.70
1356 1477 2.320745 TCTGCATGCATACACAGAGG 57.679 50.000 22.97 6.12 34.35 3.69
1357 1478 3.879932 CATCTGCATGCATACACAGAG 57.120 47.619 22.97 6.92 42.07 3.35
1371 1492 2.144730 CTTCATAGGCTCTGCATCTGC 58.855 52.381 0.00 0.00 42.50 4.26
1372 1493 3.472283 ACTTCATAGGCTCTGCATCTG 57.528 47.619 0.00 0.00 0.00 2.90
1373 1494 4.837298 TCATACTTCATAGGCTCTGCATCT 59.163 41.667 0.00 0.00 0.00 2.90
1374 1495 5.144692 TCATACTTCATAGGCTCTGCATC 57.855 43.478 0.00 0.00 0.00 3.91
1375 1496 5.071519 AGTTCATACTTCATAGGCTCTGCAT 59.928 40.000 0.00 0.00 0.00 3.96
1376 1497 4.406972 AGTTCATACTTCATAGGCTCTGCA 59.593 41.667 0.00 0.00 0.00 4.41
1377 1498 4.749099 CAGTTCATACTTCATAGGCTCTGC 59.251 45.833 0.00 0.00 30.26 4.26
1378 1499 5.911752 ACAGTTCATACTTCATAGGCTCTG 58.088 41.667 0.00 0.00 30.26 3.35
1379 1500 6.382570 AGAACAGTTCATACTTCATAGGCTCT 59.617 38.462 15.85 0.00 30.26 4.09
1380 1501 6.578023 AGAACAGTTCATACTTCATAGGCTC 58.422 40.000 15.85 0.00 30.26 4.70
1381 1502 6.382570 AGAGAACAGTTCATACTTCATAGGCT 59.617 38.462 15.85 0.00 30.26 4.58
1382 1503 6.578023 AGAGAACAGTTCATACTTCATAGGC 58.422 40.000 15.85 0.00 30.26 3.93
1383 1504 8.253810 TCAAGAGAACAGTTCATACTTCATAGG 58.746 37.037 15.85 6.13 30.26 2.57
1384 1505 9.814899 ATCAAGAGAACAGTTCATACTTCATAG 57.185 33.333 15.85 6.41 30.26 2.23
1386 1507 9.512588 AAATCAAGAGAACAGTTCATACTTCAT 57.487 29.630 15.85 7.14 30.26 2.57
1387 1508 8.777413 CAAATCAAGAGAACAGTTCATACTTCA 58.223 33.333 15.85 5.23 30.26 3.02
1388 1509 8.778358 ACAAATCAAGAGAACAGTTCATACTTC 58.222 33.333 15.85 3.91 30.26 3.01
1389 1510 8.682936 ACAAATCAAGAGAACAGTTCATACTT 57.317 30.769 15.85 13.47 30.26 2.24
1390 1511 9.950496 ATACAAATCAAGAGAACAGTTCATACT 57.050 29.630 15.85 8.61 34.00 2.12
1423 1549 0.678684 TCTGCATGCATCCACAGTGG 60.679 55.000 22.97 14.19 39.43 4.00
1424 1550 1.065551 CATCTGCATGCATCCACAGTG 59.934 52.381 22.97 6.92 0.00 3.66
1425 1551 1.389555 CATCTGCATGCATCCACAGT 58.610 50.000 22.97 0.00 0.00 3.55
1493 1619 3.963383 ACACATCACACGTTTTTCCTC 57.037 42.857 0.00 0.00 0.00 3.71
1522 1648 4.024048 ACGCACAAACTTTATTCCAGTGAG 60.024 41.667 0.00 0.00 0.00 3.51
1526 1652 3.425193 GCAACGCACAAACTTTATTCCAG 59.575 43.478 0.00 0.00 0.00 3.86
1705 1838 7.080099 GGTTTTTCTAATTAACCGGACAACTC 58.920 38.462 9.46 0.00 32.76 3.01
1731 1864 8.706322 ATTAACTGGACAATCTGGTTTAGTTT 57.294 30.769 0.00 0.00 32.86 2.66
1735 1868 9.967451 TCATAATTAACTGGACAATCTGGTTTA 57.033 29.630 0.00 0.00 0.00 2.01
1770 1904 1.343465 ACGATTGTGACGGGTTTCTCT 59.657 47.619 0.00 0.00 34.93 3.10
1797 1933 5.722441 TGTTAGTGGGGTATCTTATGTGTGA 59.278 40.000 0.00 0.00 0.00 3.58
1818 1954 2.177016 AGGCCCTCTTTAAAGTGGTGTT 59.823 45.455 26.66 13.63 37.85 3.32
1842 1978 2.632512 TGACACCTGTGTGCTATCTCAA 59.367 45.455 7.81 0.00 46.86 3.02
1848 1984 0.389817 GCGATGACACCTGTGTGCTA 60.390 55.000 7.81 0.00 46.86 3.49
1854 1990 0.391661 GTGATGGCGATGACACCTGT 60.392 55.000 0.00 0.00 0.00 4.00
1893 2046 0.671796 TCGAAGTCGTTTGCTCAGGA 59.328 50.000 0.00 0.00 40.80 3.86
1909 2062 1.611977 CTACAGTGTGGGTTGAGTCGA 59.388 52.381 5.88 0.00 0.00 4.20
1923 2098 3.577919 AGTTCCACTTGGTCTCTACAGT 58.422 45.455 0.00 0.00 36.34 3.55
1925 2100 9.483489 TTTATATAGTTCCACTTGGTCTCTACA 57.517 33.333 0.00 0.00 36.34 2.74
1936 2111 6.047231 GCGTGGACTTTTATATAGTTCCACT 58.953 40.000 20.61 0.00 39.27 4.00
1940 2115 5.465724 CCTGGCGTGGACTTTTATATAGTTC 59.534 44.000 0.00 0.00 0.00 3.01
1942 2117 4.202326 CCCTGGCGTGGACTTTTATATAGT 60.202 45.833 0.00 0.00 0.00 2.12
1995 2213 2.095372 GCAGTTTTTAATCGGAGTCGGG 59.905 50.000 0.00 0.00 36.95 5.14
2006 2224 8.524487 TGTTTAGTTCTCCTTTGCAGTTTTTAA 58.476 29.630 0.00 0.00 0.00 1.52
2007 2225 7.971722 GTGTTTAGTTCTCCTTTGCAGTTTTTA 59.028 33.333 0.00 0.00 0.00 1.52
2010 2228 5.448632 CGTGTTTAGTTCTCCTTTGCAGTTT 60.449 40.000 0.00 0.00 0.00 2.66
2050 2268 5.642063 CGTTTCCTGGCTAAATGAACTTCTA 59.358 40.000 0.00 0.00 0.00 2.10
2061 2312 1.621814 AGTACAGCGTTTCCTGGCTAA 59.378 47.619 0.00 0.00 37.41 3.09
2103 2355 2.423892 GCTTTAGCTTAGCTTGTTCCCC 59.576 50.000 13.44 0.00 40.44 4.81
2152 2405 4.589252 TGTTTTCGTTTTGTATGACCGTG 58.411 39.130 0.00 0.00 0.00 4.94
2154 2407 6.635239 AGATTTGTTTTCGTTTTGTATGACCG 59.365 34.615 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.