Multiple sequence alignment - TraesCS5B01G240500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G240500 chr5B 100.000 2954 0 0 1 2954 420717212 420714259 0.000000e+00 5456.0
1 TraesCS5B01G240500 chr5B 94.715 719 18 12 1 718 406870586 406871285 0.000000e+00 1099.0
2 TraesCS5B01G240500 chr5B 94.282 717 21 13 1 716 179227030 179226333 0.000000e+00 1079.0
3 TraesCS5B01G240500 chr5B 76.914 849 160 26 2103 2930 83676776 83677609 1.610000e-122 449.0
4 TraesCS5B01G240500 chr5B 76.185 907 185 23 1041 1933 419947744 419948633 1.610000e-122 449.0
5 TraesCS5B01G240500 chr5B 76.218 862 169 32 1097 1947 420732867 420732031 9.790000e-115 424.0
6 TraesCS5B01G240500 chr5B 75.326 920 177 33 1042 1949 419727527 419728408 2.130000e-106 396.0
7 TraesCS5B01G240500 chr5B 82.072 502 47 20 103 573 445111386 445110897 3.570000e-104 388.0
8 TraesCS5B01G240500 chr5A 94.638 1063 47 2 904 1966 457514702 457515754 0.000000e+00 1639.0
9 TraesCS5B01G240500 chr5A 94.656 973 46 4 1965 2937 457515820 457516786 0.000000e+00 1504.0
10 TraesCS5B01G240500 chr5A 77.988 845 161 17 2103 2930 70482132 70482968 9.450000e-140 507.0
11 TraesCS5B01G240500 chr5A 77.461 843 158 28 1114 1947 457511703 457512522 2.660000e-130 475.0
12 TraesCS5B01G240500 chr5A 75.858 787 155 26 1042 1815 457086364 457087128 4.650000e-98 368.0
13 TraesCS5B01G240500 chr5A 80.000 305 56 5 2583 2883 457086724 457086421 1.380000e-53 220.0
14 TraesCS5B01G240500 chr5D 94.371 1066 40 7 904 1966 355796617 355795569 0.000000e+00 1618.0
15 TraesCS5B01G240500 chr5D 94.758 973 42 4 1965 2937 355795508 355794545 0.000000e+00 1506.0
16 TraesCS5B01G240500 chr5D 77.396 845 166 17 2103 2930 75353569 75354405 2.060000e-131 479.0
17 TraesCS5B01G240500 chr5D 76.923 845 159 28 1114 1947 355797693 355796874 5.810000e-122 448.0
18 TraesCS5B01G240500 chr5D 76.210 723 152 13 1041 1750 355076742 355077457 6.020000e-97 364.0
19 TraesCS5B01G240500 chr5D 74.551 334 70 14 2449 2776 356194233 356194557 6.640000e-27 132.0
20 TraesCS5B01G240500 chr7B 98.336 721 8 3 1 718 68097430 68096711 0.000000e+00 1262.0
21 TraesCS5B01G240500 chr7B 94.965 715 17 11 1 715 528879512 528878817 0.000000e+00 1103.0
22 TraesCS5B01G240500 chr7B 75.549 319 54 17 2462 2774 87138338 87138638 5.140000e-28 135.0
23 TraesCS5B01G240500 chr3B 97.346 716 18 1 1 715 552478165 552477450 0.000000e+00 1216.0
24 TraesCS5B01G240500 chr2A 94.207 725 20 14 1 723 719453805 719453101 0.000000e+00 1086.0
25 TraesCS5B01G240500 chr6B 94.421 717 19 13 1 715 408661971 408661274 0.000000e+00 1083.0
26 TraesCS5B01G240500 chr6B 93.986 715 23 10 1 715 704850675 704851369 0.000000e+00 1064.0
27 TraesCS5B01G240500 chr7A 94.142 717 22 12 1 717 171418660 171417964 0.000000e+00 1074.0
28 TraesCS5B01G240500 chr4B 93.575 716 26 12 1 715 194219166 194218470 0.000000e+00 1050.0
29 TraesCS5B01G240500 chr6D 82.766 499 53 16 101 573 14045312 14044821 5.890000e-112 414.0
30 TraesCS5B01G240500 chr6D 91.150 113 10 0 716 828 351140796 351140908 1.420000e-33 154.0
31 TraesCS5B01G240500 chr1D 83.000 200 34 0 2058 2257 402750177 402749978 6.500000e-42 182.0
32 TraesCS5B01G240500 chr7D 90.400 125 12 0 716 840 20336200 20336076 6.550000e-37 165.0
33 TraesCS5B01G240500 chr7D 77.663 291 49 12 2597 2882 125888195 125887916 2.360000e-36 163.0
34 TraesCS5B01G240500 chr7D 77.055 292 49 13 2597 2882 125909399 125909120 5.100000e-33 152.0
35 TraesCS5B01G240500 chr4D 76.849 311 49 15 1204 1495 116132042 116131736 1.420000e-33 154.0
36 TraesCS5B01G240500 chr4A 76.299 308 56 10 1204 1495 460460011 460460317 6.600000e-32 148.0
37 TraesCS5B01G240500 chr3A 88.496 113 13 0 2145 2257 657100466 657100578 1.430000e-28 137.0
38 TraesCS5B01G240500 chr3A 85.484 124 18 0 705 828 422910955 422911078 2.390000e-26 130.0
39 TraesCS5B01G240500 chr2D 73.640 239 47 14 1259 1489 7696238 7696468 8.780000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G240500 chr5B 420714259 420717212 2953 True 5456.000000 5456 100.000000 1 2954 1 chr5B.!!$R2 2953
1 TraesCS5B01G240500 chr5B 406870586 406871285 699 False 1099.000000 1099 94.715000 1 718 1 chr5B.!!$F2 717
2 TraesCS5B01G240500 chr5B 179226333 179227030 697 True 1079.000000 1079 94.282000 1 716 1 chr5B.!!$R1 715
3 TraesCS5B01G240500 chr5B 83676776 83677609 833 False 449.000000 449 76.914000 2103 2930 1 chr5B.!!$F1 827
4 TraesCS5B01G240500 chr5B 419947744 419948633 889 False 449.000000 449 76.185000 1041 1933 1 chr5B.!!$F4 892
5 TraesCS5B01G240500 chr5B 420732031 420732867 836 True 424.000000 424 76.218000 1097 1947 1 chr5B.!!$R3 850
6 TraesCS5B01G240500 chr5B 419727527 419728408 881 False 396.000000 396 75.326000 1042 1949 1 chr5B.!!$F3 907
7 TraesCS5B01G240500 chr5A 457511703 457516786 5083 False 1206.000000 1639 88.918333 904 2937 3 chr5A.!!$F3 2033
8 TraesCS5B01G240500 chr5A 70482132 70482968 836 False 507.000000 507 77.988000 2103 2930 1 chr5A.!!$F1 827
9 TraesCS5B01G240500 chr5A 457086364 457087128 764 False 368.000000 368 75.858000 1042 1815 1 chr5A.!!$F2 773
10 TraesCS5B01G240500 chr5D 355794545 355797693 3148 True 1190.666667 1618 88.684000 904 2937 3 chr5D.!!$R1 2033
11 TraesCS5B01G240500 chr5D 75353569 75354405 836 False 479.000000 479 77.396000 2103 2930 1 chr5D.!!$F1 827
12 TraesCS5B01G240500 chr5D 355076742 355077457 715 False 364.000000 364 76.210000 1041 1750 1 chr5D.!!$F2 709
13 TraesCS5B01G240500 chr7B 68096711 68097430 719 True 1262.000000 1262 98.336000 1 718 1 chr7B.!!$R1 717
14 TraesCS5B01G240500 chr7B 528878817 528879512 695 True 1103.000000 1103 94.965000 1 715 1 chr7B.!!$R2 714
15 TraesCS5B01G240500 chr3B 552477450 552478165 715 True 1216.000000 1216 97.346000 1 715 1 chr3B.!!$R1 714
16 TraesCS5B01G240500 chr2A 719453101 719453805 704 True 1086.000000 1086 94.207000 1 723 1 chr2A.!!$R1 722
17 TraesCS5B01G240500 chr6B 408661274 408661971 697 True 1083.000000 1083 94.421000 1 715 1 chr6B.!!$R1 714
18 TraesCS5B01G240500 chr6B 704850675 704851369 694 False 1064.000000 1064 93.986000 1 715 1 chr6B.!!$F1 714
19 TraesCS5B01G240500 chr7A 171417964 171418660 696 True 1074.000000 1074 94.142000 1 717 1 chr7A.!!$R1 716
20 TraesCS5B01G240500 chr4B 194218470 194219166 696 True 1050.000000 1050 93.575000 1 715 1 chr4B.!!$R1 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 953 0.108424 CCAGCACTAGTCTCTGCCAC 60.108 60.0 13.59 0.0 33.57 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2287 5642 0.24912 CAAGTATGGGCTCGACCACA 59.751 55.0 0.0 0.0 44.72 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
277 290 2.485426 TGGAGAAAATCAAGAAGCAGCG 59.515 45.455 0.00 0.00 0.00 5.18
567 580 8.100135 AGAAAAGTAGGATGGAAGAGAATCAT 57.900 34.615 0.00 0.00 37.82 2.45
661 676 0.996583 ACCTTTTCGGGGCCTATCAA 59.003 50.000 0.84 0.00 36.97 2.57
718 733 1.386533 CTCCCTAGACGCGTCCTTAA 58.613 55.000 34.08 16.98 0.00 1.85
720 735 2.361438 CTCCCTAGACGCGTCCTTAATT 59.639 50.000 34.08 17.97 0.00 1.40
722 737 3.953612 TCCCTAGACGCGTCCTTAATTTA 59.046 43.478 34.08 17.43 0.00 1.40
723 738 4.047142 CCCTAGACGCGTCCTTAATTTAC 58.953 47.826 34.08 7.42 0.00 2.01
725 740 4.738740 CCTAGACGCGTCCTTAATTTACAG 59.261 45.833 34.08 14.95 0.00 2.74
726 741 3.518590 AGACGCGTCCTTAATTTACAGG 58.481 45.455 34.08 0.00 0.00 4.00
727 742 3.056322 AGACGCGTCCTTAATTTACAGGT 60.056 43.478 34.08 8.86 0.00 4.00
728 743 2.997986 ACGCGTCCTTAATTTACAGGTG 59.002 45.455 5.58 0.00 0.00 4.00
729 744 2.997986 CGCGTCCTTAATTTACAGGTGT 59.002 45.455 0.00 0.00 0.00 4.16
730 745 4.175516 CGCGTCCTTAATTTACAGGTGTA 58.824 43.478 0.00 0.00 0.00 2.90
731 746 4.626604 CGCGTCCTTAATTTACAGGTGTAA 59.373 41.667 0.00 0.00 38.60 2.41
732 747 5.292589 CGCGTCCTTAATTTACAGGTGTAAT 59.707 40.000 0.00 0.00 39.89 1.89
733 748 6.183360 CGCGTCCTTAATTTACAGGTGTAATT 60.183 38.462 0.00 0.00 39.89 1.40
734 749 7.532571 GCGTCCTTAATTTACAGGTGTAATTT 58.467 34.615 12.31 12.31 39.89 1.82
735 750 8.667463 GCGTCCTTAATTTACAGGTGTAATTTA 58.333 33.333 3.46 7.91 39.89 1.40
741 756 6.628919 ATTTACAGGTGTAATTTATCGGGC 57.371 37.500 3.46 0.00 39.89 6.13
742 757 2.927028 ACAGGTGTAATTTATCGGGCC 58.073 47.619 0.00 0.00 0.00 5.80
743 758 2.240160 ACAGGTGTAATTTATCGGGCCA 59.760 45.455 4.39 0.00 0.00 5.36
744 759 2.878406 CAGGTGTAATTTATCGGGCCAG 59.122 50.000 4.39 0.00 0.00 4.85
745 760 2.508300 AGGTGTAATTTATCGGGCCAGT 59.492 45.455 4.39 0.00 0.00 4.00
746 761 3.712733 AGGTGTAATTTATCGGGCCAGTA 59.287 43.478 4.39 0.00 0.00 2.74
747 762 4.062991 GGTGTAATTTATCGGGCCAGTAG 58.937 47.826 4.39 0.00 0.00 2.57
748 763 4.443881 GGTGTAATTTATCGGGCCAGTAGT 60.444 45.833 4.39 0.00 0.00 2.73
749 764 4.510340 GTGTAATTTATCGGGCCAGTAGTG 59.490 45.833 4.39 0.00 0.00 2.74
750 765 4.406326 TGTAATTTATCGGGCCAGTAGTGA 59.594 41.667 4.39 0.00 0.00 3.41
751 766 4.706842 AATTTATCGGGCCAGTAGTGAT 57.293 40.909 4.39 0.00 0.00 3.06
752 767 4.706842 ATTTATCGGGCCAGTAGTGATT 57.293 40.909 4.39 0.00 0.00 2.57
753 768 4.497291 TTTATCGGGCCAGTAGTGATTT 57.503 40.909 4.39 0.00 0.00 2.17
754 769 2.622064 ATCGGGCCAGTAGTGATTTC 57.378 50.000 4.39 0.00 0.00 2.17
755 770 0.539986 TCGGGCCAGTAGTGATTTCC 59.460 55.000 4.39 0.00 0.00 3.13
756 771 0.810031 CGGGCCAGTAGTGATTTCCG 60.810 60.000 4.39 3.16 0.00 4.30
757 772 0.463833 GGGCCAGTAGTGATTTCCGG 60.464 60.000 4.39 0.00 0.00 5.14
758 773 1.095807 GGCCAGTAGTGATTTCCGGC 61.096 60.000 0.00 0.00 37.33 6.13
759 774 1.095807 GCCAGTAGTGATTTCCGGCC 61.096 60.000 0.00 0.00 31.76 6.13
760 775 0.810031 CCAGTAGTGATTTCCGGCCG 60.810 60.000 21.04 21.04 0.00 6.13
761 776 0.174845 CAGTAGTGATTTCCGGCCGA 59.825 55.000 30.73 7.23 0.00 5.54
762 777 0.899720 AGTAGTGATTTCCGGCCGAA 59.100 50.000 30.73 15.30 0.00 4.30
763 778 1.276989 AGTAGTGATTTCCGGCCGAAA 59.723 47.619 30.73 24.02 44.49 3.46
764 779 1.664151 GTAGTGATTTCCGGCCGAAAG 59.336 52.381 30.73 10.73 43.64 2.62
765 780 1.136774 GTGATTTCCGGCCGAAAGC 59.863 57.895 30.73 25.55 45.27 3.51
766 781 3.585856 GATTTCCGGCCGAAAGCA 58.414 55.556 30.73 0.00 44.59 3.91
767 782 1.880186 GATTTCCGGCCGAAAGCAA 59.120 52.632 30.73 11.78 44.59 3.91
768 783 0.242555 GATTTCCGGCCGAAAGCAAA 59.757 50.000 30.73 16.64 44.59 3.68
769 784 0.676736 ATTTCCGGCCGAAAGCAAAA 59.323 45.000 30.73 16.19 43.64 2.44
770 785 0.249114 TTTCCGGCCGAAAGCAAAAC 60.249 50.000 30.73 0.00 46.50 2.43
771 786 2.395367 TTCCGGCCGAAAGCAAAACG 62.395 55.000 30.73 5.39 46.50 3.60
772 787 2.634777 CGGCCGAAAGCAAAACGA 59.365 55.556 24.07 0.00 46.50 3.85
773 788 1.724581 CGGCCGAAAGCAAAACGAC 60.725 57.895 24.07 0.00 46.50 4.34
774 789 1.724581 GGCCGAAAGCAAAACGACG 60.725 57.895 0.00 0.00 46.50 5.12
775 790 1.724581 GCCGAAAGCAAAACGACGG 60.725 57.895 0.00 0.00 42.97 4.79
776 791 1.935925 CCGAAAGCAAAACGACGGA 59.064 52.632 0.00 0.00 42.40 4.69
777 792 0.383860 CCGAAAGCAAAACGACGGAC 60.384 55.000 0.00 0.00 42.40 4.79
787 802 2.337532 CGACGGACGGAAAGGTGT 59.662 61.111 0.00 0.00 38.46 4.16
788 803 1.580942 CGACGGACGGAAAGGTGTA 59.419 57.895 0.00 0.00 38.46 2.90
789 804 0.171903 CGACGGACGGAAAGGTGTAT 59.828 55.000 0.00 0.00 38.46 2.29
790 805 1.403249 CGACGGACGGAAAGGTGTATT 60.403 52.381 0.00 0.00 38.46 1.89
791 806 1.997606 GACGGACGGAAAGGTGTATTG 59.002 52.381 0.00 0.00 0.00 1.90
792 807 1.345415 ACGGACGGAAAGGTGTATTGT 59.655 47.619 0.00 0.00 0.00 2.71
793 808 2.224354 ACGGACGGAAAGGTGTATTGTT 60.224 45.455 0.00 0.00 0.00 2.83
794 809 2.809696 CGGACGGAAAGGTGTATTGTTT 59.190 45.455 0.00 0.00 0.00 2.83
795 810 3.995705 CGGACGGAAAGGTGTATTGTTTA 59.004 43.478 0.00 0.00 0.00 2.01
796 811 4.143052 CGGACGGAAAGGTGTATTGTTTAC 60.143 45.833 0.00 0.00 0.00 2.01
797 812 4.756135 GGACGGAAAGGTGTATTGTTTACA 59.244 41.667 0.00 0.00 0.00 2.41
798 813 5.106830 GGACGGAAAGGTGTATTGTTTACAG 60.107 44.000 0.00 0.00 0.00 2.74
799 814 4.758165 ACGGAAAGGTGTATTGTTTACAGG 59.242 41.667 0.00 0.00 0.00 4.00
800 815 4.758165 CGGAAAGGTGTATTGTTTACAGGT 59.242 41.667 0.00 0.00 0.00 4.00
801 816 5.334569 CGGAAAGGTGTATTGTTTACAGGTG 60.335 44.000 0.00 0.00 0.00 4.00
802 817 5.533528 GGAAAGGTGTATTGTTTACAGGTGT 59.466 40.000 0.00 0.00 0.00 4.16
803 818 6.711645 GGAAAGGTGTATTGTTTACAGGTGTA 59.288 38.462 0.00 0.00 0.00 2.90
804 819 7.392393 GGAAAGGTGTATTGTTTACAGGTGTAT 59.608 37.037 0.00 0.00 0.00 2.29
805 820 8.700439 AAAGGTGTATTGTTTACAGGTGTATT 57.300 30.769 0.00 0.00 0.00 1.89
806 821 7.681939 AGGTGTATTGTTTACAGGTGTATTG 57.318 36.000 0.00 0.00 0.00 1.90
807 822 6.150474 AGGTGTATTGTTTACAGGTGTATTGC 59.850 38.462 0.00 0.00 0.00 3.56
808 823 6.150474 GGTGTATTGTTTACAGGTGTATTGCT 59.850 38.462 0.00 0.00 0.00 3.91
809 824 7.334921 GGTGTATTGTTTACAGGTGTATTGCTA 59.665 37.037 0.00 0.00 0.00 3.49
810 825 8.723311 GTGTATTGTTTACAGGTGTATTGCTAA 58.277 33.333 0.00 0.00 0.00 3.09
811 826 8.941977 TGTATTGTTTACAGGTGTATTGCTAAG 58.058 33.333 0.00 0.00 0.00 2.18
812 827 5.873179 TGTTTACAGGTGTATTGCTAAGC 57.127 39.130 0.00 0.00 0.00 3.09
813 828 5.309638 TGTTTACAGGTGTATTGCTAAGCA 58.690 37.500 0.00 0.00 36.47 3.91
825 840 4.419522 TTGCTAAGCAAAACGAGATTCC 57.580 40.909 0.00 0.00 45.96 3.01
826 841 3.407698 TGCTAAGCAAAACGAGATTCCA 58.592 40.909 0.00 0.00 34.76 3.53
827 842 3.818210 TGCTAAGCAAAACGAGATTCCAA 59.182 39.130 0.00 0.00 34.76 3.53
828 843 4.083324 TGCTAAGCAAAACGAGATTCCAAG 60.083 41.667 0.00 0.00 34.76 3.61
829 844 2.997485 AGCAAAACGAGATTCCAAGC 57.003 45.000 0.00 0.00 0.00 4.01
830 845 1.197721 AGCAAAACGAGATTCCAAGCG 59.802 47.619 0.00 0.00 0.00 4.68
831 846 1.606606 CAAAACGAGATTCCAAGCGC 58.393 50.000 0.00 0.00 0.00 5.92
832 847 0.165944 AAAACGAGATTCCAAGCGCG 59.834 50.000 0.00 0.00 43.08 6.86
833 848 2.240612 AAACGAGATTCCAAGCGCGC 62.241 55.000 26.66 26.66 41.19 6.86
834 849 3.929948 CGAGATTCCAAGCGCGCC 61.930 66.667 30.33 10.72 30.02 6.53
835 850 3.577313 GAGATTCCAAGCGCGCCC 61.577 66.667 30.33 8.34 0.00 6.13
836 851 4.101448 AGATTCCAAGCGCGCCCT 62.101 61.111 30.33 13.35 0.00 5.19
837 852 2.203015 GATTCCAAGCGCGCCCTA 60.203 61.111 30.33 8.38 0.00 3.53
838 853 1.817941 GATTCCAAGCGCGCCCTAA 60.818 57.895 30.33 17.55 0.00 2.69
839 854 1.776034 GATTCCAAGCGCGCCCTAAG 61.776 60.000 30.33 12.80 0.00 2.18
842 857 3.869272 CAAGCGCGCCCTAAGCTG 61.869 66.667 30.33 9.95 41.53 4.24
843 858 4.394712 AAGCGCGCCCTAAGCTGT 62.395 61.111 30.33 1.73 41.53 4.40
844 859 3.014085 AAGCGCGCCCTAAGCTGTA 62.014 57.895 30.33 0.00 41.53 2.74
845 860 2.510691 GCGCGCCCTAAGCTGTAA 60.511 61.111 23.24 0.00 40.39 2.41
846 861 2.810012 GCGCGCCCTAAGCTGTAAC 61.810 63.158 23.24 0.00 40.39 2.50
847 862 2.171725 CGCGCCCTAAGCTGTAACC 61.172 63.158 0.00 0.00 40.39 2.85
848 863 1.078708 GCGCCCTAAGCTGTAACCA 60.079 57.895 0.00 0.00 40.39 3.67
849 864 1.090052 GCGCCCTAAGCTGTAACCAG 61.090 60.000 0.00 0.00 41.91 4.00
850 865 0.535335 CGCCCTAAGCTGTAACCAGA 59.465 55.000 0.00 0.00 41.50 3.86
851 866 1.739371 CGCCCTAAGCTGTAACCAGAC 60.739 57.143 0.00 0.00 41.50 3.51
852 867 1.407025 GCCCTAAGCTGTAACCAGACC 60.407 57.143 0.00 0.00 41.50 3.85
853 868 1.906574 CCCTAAGCTGTAACCAGACCA 59.093 52.381 0.00 0.00 41.50 4.02
854 869 2.304761 CCCTAAGCTGTAACCAGACCAA 59.695 50.000 0.00 0.00 41.50 3.67
855 870 3.335579 CCTAAGCTGTAACCAGACCAAC 58.664 50.000 0.00 0.00 41.50 3.77
856 871 3.008049 CCTAAGCTGTAACCAGACCAACT 59.992 47.826 0.00 0.00 41.50 3.16
857 872 3.577805 AAGCTGTAACCAGACCAACTT 57.422 42.857 0.00 0.00 41.50 2.66
858 873 3.127425 AGCTGTAACCAGACCAACTTC 57.873 47.619 0.00 0.00 41.50 3.01
859 874 2.706190 AGCTGTAACCAGACCAACTTCT 59.294 45.455 0.00 0.00 41.50 2.85
860 875 3.067833 GCTGTAACCAGACCAACTTCTC 58.932 50.000 0.00 0.00 41.50 2.87
861 876 3.494398 GCTGTAACCAGACCAACTTCTCA 60.494 47.826 0.00 0.00 41.50 3.27
862 877 4.804261 GCTGTAACCAGACCAACTTCTCAT 60.804 45.833 0.00 0.00 41.50 2.90
863 878 4.641396 TGTAACCAGACCAACTTCTCATG 58.359 43.478 0.00 0.00 0.00 3.07
864 879 4.346709 TGTAACCAGACCAACTTCTCATGA 59.653 41.667 0.00 0.00 0.00 3.07
865 880 3.409026 ACCAGACCAACTTCTCATGAC 57.591 47.619 0.00 0.00 0.00 3.06
866 881 2.289072 ACCAGACCAACTTCTCATGACG 60.289 50.000 0.00 0.00 0.00 4.35
867 882 2.289072 CCAGACCAACTTCTCATGACGT 60.289 50.000 0.00 0.00 0.00 4.34
868 883 3.056821 CCAGACCAACTTCTCATGACGTA 60.057 47.826 0.00 0.00 0.00 3.57
869 884 4.169508 CAGACCAACTTCTCATGACGTAG 58.830 47.826 0.00 0.00 0.00 3.51
884 899 3.623906 ACGTAGTAGACTACAGCTCCA 57.376 47.619 17.66 0.00 46.92 3.86
885 900 3.947868 ACGTAGTAGACTACAGCTCCAA 58.052 45.455 17.66 0.00 46.92 3.53
886 901 3.688673 ACGTAGTAGACTACAGCTCCAAC 59.311 47.826 17.66 1.24 46.92 3.77
887 902 3.940221 CGTAGTAGACTACAGCTCCAACT 59.060 47.826 17.66 0.00 46.92 3.16
888 903 4.395542 CGTAGTAGACTACAGCTCCAACTT 59.604 45.833 17.66 0.00 46.92 2.66
889 904 5.106237 CGTAGTAGACTACAGCTCCAACTTT 60.106 44.000 17.66 0.00 46.92 2.66
890 905 5.394224 AGTAGACTACAGCTCCAACTTTC 57.606 43.478 14.95 0.00 0.00 2.62
891 906 4.833380 AGTAGACTACAGCTCCAACTTTCA 59.167 41.667 14.95 0.00 0.00 2.69
892 907 3.996480 AGACTACAGCTCCAACTTTCAC 58.004 45.455 0.00 0.00 0.00 3.18
893 908 3.388024 AGACTACAGCTCCAACTTTCACA 59.612 43.478 0.00 0.00 0.00 3.58
894 909 3.467803 ACTACAGCTCCAACTTTCACAC 58.532 45.455 0.00 0.00 0.00 3.82
895 910 2.717639 ACAGCTCCAACTTTCACACT 57.282 45.000 0.00 0.00 0.00 3.55
896 911 3.004752 ACAGCTCCAACTTTCACACTT 57.995 42.857 0.00 0.00 0.00 3.16
897 912 3.356290 ACAGCTCCAACTTTCACACTTT 58.644 40.909 0.00 0.00 0.00 2.66
898 913 3.378427 ACAGCTCCAACTTTCACACTTTC 59.622 43.478 0.00 0.00 0.00 2.62
899 914 3.378112 CAGCTCCAACTTTCACACTTTCA 59.622 43.478 0.00 0.00 0.00 2.69
900 915 4.016444 AGCTCCAACTTTCACACTTTCAA 58.984 39.130 0.00 0.00 0.00 2.69
901 916 4.096984 AGCTCCAACTTTCACACTTTCAAG 59.903 41.667 0.00 0.00 0.00 3.02
902 917 4.142381 GCTCCAACTTTCACACTTTCAAGT 60.142 41.667 0.00 0.00 40.60 3.16
903 918 5.560966 TCCAACTTTCACACTTTCAAGTC 57.439 39.130 0.00 0.00 37.08 3.01
904 919 5.253330 TCCAACTTTCACACTTTCAAGTCT 58.747 37.500 0.00 0.00 37.08 3.24
905 920 5.710099 TCCAACTTTCACACTTTCAAGTCTT 59.290 36.000 0.00 0.00 37.08 3.01
906 921 6.030228 CCAACTTTCACACTTTCAAGTCTTC 58.970 40.000 0.00 0.00 37.08 2.87
907 922 6.349280 CCAACTTTCACACTTTCAAGTCTTCA 60.349 38.462 0.00 0.00 37.08 3.02
908 923 6.183309 ACTTTCACACTTTCAAGTCTTCAC 57.817 37.500 0.00 0.00 37.08 3.18
909 924 5.705441 ACTTTCACACTTTCAAGTCTTCACA 59.295 36.000 0.00 0.00 37.08 3.58
910 925 5.545658 TTCACACTTTCAAGTCTTCACAC 57.454 39.130 0.00 0.00 37.08 3.82
911 926 4.832248 TCACACTTTCAAGTCTTCACACT 58.168 39.130 0.00 0.00 37.08 3.55
912 927 5.245531 TCACACTTTCAAGTCTTCACACTT 58.754 37.500 0.00 0.00 37.08 3.16
913 928 5.705441 TCACACTTTCAAGTCTTCACACTTT 59.295 36.000 0.00 0.00 37.08 2.66
914 929 6.024049 CACACTTTCAAGTCTTCACACTTTC 58.976 40.000 0.00 0.00 37.08 2.62
915 930 5.705441 ACACTTTCAAGTCTTCACACTTTCA 59.295 36.000 0.00 0.00 37.08 2.69
916 931 6.206634 ACACTTTCAAGTCTTCACACTTTCAA 59.793 34.615 0.00 0.00 37.08 2.69
917 932 6.744537 CACTTTCAAGTCTTCACACTTTCAAG 59.255 38.462 0.00 0.00 37.08 3.02
918 933 6.431234 ACTTTCAAGTCTTCACACTTTCAAGT 59.569 34.615 0.00 0.00 35.20 3.16
919 934 6.422776 TTCAAGTCTTCACACTTTCAAGTC 57.577 37.500 0.00 0.00 37.08 3.01
920 935 4.876107 TCAAGTCTTCACACTTTCAAGTCC 59.124 41.667 0.00 0.00 37.08 3.85
921 936 4.487714 AGTCTTCACACTTTCAAGTCCA 57.512 40.909 0.00 0.00 37.08 4.02
922 937 4.446371 AGTCTTCACACTTTCAAGTCCAG 58.554 43.478 0.00 0.00 37.08 3.86
923 938 3.002759 GTCTTCACACTTTCAAGTCCAGC 59.997 47.826 0.00 0.00 37.08 4.85
924 939 2.708216 TCACACTTTCAAGTCCAGCA 57.292 45.000 0.00 0.00 37.08 4.41
925 940 2.288666 TCACACTTTCAAGTCCAGCAC 58.711 47.619 0.00 0.00 37.08 4.40
926 941 2.092968 TCACACTTTCAAGTCCAGCACT 60.093 45.455 0.00 0.00 37.08 4.40
927 942 3.133901 TCACACTTTCAAGTCCAGCACTA 59.866 43.478 0.00 0.00 37.08 2.74
928 943 3.496130 CACACTTTCAAGTCCAGCACTAG 59.504 47.826 0.00 0.00 37.08 2.57
929 944 3.134804 ACACTTTCAAGTCCAGCACTAGT 59.865 43.478 0.00 0.00 37.08 2.57
930 945 3.743396 CACTTTCAAGTCCAGCACTAGTC 59.257 47.826 0.00 0.00 37.08 2.59
931 946 3.643792 ACTTTCAAGTCCAGCACTAGTCT 59.356 43.478 0.00 0.00 32.86 3.24
932 947 3.944055 TTCAAGTCCAGCACTAGTCTC 57.056 47.619 0.00 0.00 32.30 3.36
933 948 3.162147 TCAAGTCCAGCACTAGTCTCT 57.838 47.619 0.00 0.00 32.30 3.10
934 949 2.822561 TCAAGTCCAGCACTAGTCTCTG 59.177 50.000 12.53 12.53 32.30 3.35
935 950 1.181786 AGTCCAGCACTAGTCTCTGC 58.818 55.000 13.59 5.70 31.37 4.26
936 951 0.174617 GTCCAGCACTAGTCTCTGCC 59.825 60.000 13.59 5.48 33.57 4.85
937 952 0.251787 TCCAGCACTAGTCTCTGCCA 60.252 55.000 13.59 3.13 33.57 4.92
938 953 0.108424 CCAGCACTAGTCTCTGCCAC 60.108 60.000 13.59 0.00 33.57 5.01
939 954 0.894141 CAGCACTAGTCTCTGCCACT 59.106 55.000 8.29 0.00 33.57 4.00
940 955 0.894141 AGCACTAGTCTCTGCCACTG 59.106 55.000 0.00 0.00 33.57 3.66
941 956 0.739112 GCACTAGTCTCTGCCACTGC 60.739 60.000 0.00 0.00 38.26 4.40
942 957 0.108424 CACTAGTCTCTGCCACTGCC 60.108 60.000 0.00 0.00 36.33 4.85
943 958 0.542938 ACTAGTCTCTGCCACTGCCA 60.543 55.000 0.00 0.00 36.33 4.92
944 959 0.108424 CTAGTCTCTGCCACTGCCAC 60.108 60.000 0.00 0.00 36.33 5.01
945 960 1.544825 TAGTCTCTGCCACTGCCACC 61.545 60.000 0.00 0.00 36.33 4.61
946 961 2.848679 TCTCTGCCACTGCCACCA 60.849 61.111 0.00 0.00 36.33 4.17
947 962 2.113774 CTCTGCCACTGCCACCAA 59.886 61.111 0.00 0.00 36.33 3.67
948 963 2.203337 TCTGCCACTGCCACCAAC 60.203 61.111 0.00 0.00 36.33 3.77
949 964 3.297620 CTGCCACTGCCACCAACC 61.298 66.667 0.00 0.00 36.33 3.77
950 965 4.134785 TGCCACTGCCACCAACCA 62.135 61.111 0.00 0.00 36.33 3.67
951 966 3.605664 GCCACTGCCACCAACCAC 61.606 66.667 0.00 0.00 0.00 4.16
952 967 2.195683 CCACTGCCACCAACCACT 59.804 61.111 0.00 0.00 0.00 4.00
953 968 1.898574 CCACTGCCACCAACCACTC 60.899 63.158 0.00 0.00 0.00 3.51
954 969 1.152984 CACTGCCACCAACCACTCA 60.153 57.895 0.00 0.00 0.00 3.41
955 970 0.751277 CACTGCCACCAACCACTCAA 60.751 55.000 0.00 0.00 0.00 3.02
956 971 0.751643 ACTGCCACCAACCACTCAAC 60.752 55.000 0.00 0.00 0.00 3.18
957 972 0.751277 CTGCCACCAACCACTCAACA 60.751 55.000 0.00 0.00 0.00 3.33
958 973 0.323816 TGCCACCAACCACTCAACAA 60.324 50.000 0.00 0.00 0.00 2.83
959 974 0.820871 GCCACCAACCACTCAACAAA 59.179 50.000 0.00 0.00 0.00 2.83
960 975 1.470805 GCCACCAACCACTCAACAAAC 60.471 52.381 0.00 0.00 0.00 2.93
961 976 2.099405 CCACCAACCACTCAACAAACT 58.901 47.619 0.00 0.00 0.00 2.66
962 977 3.283751 CCACCAACCACTCAACAAACTA 58.716 45.455 0.00 0.00 0.00 2.24
963 978 3.888930 CCACCAACCACTCAACAAACTAT 59.111 43.478 0.00 0.00 0.00 2.12
964 979 5.067273 CCACCAACCACTCAACAAACTATA 58.933 41.667 0.00 0.00 0.00 1.31
965 980 5.048991 CCACCAACCACTCAACAAACTATAC 60.049 44.000 0.00 0.00 0.00 1.47
966 981 5.048991 CACCAACCACTCAACAAACTATACC 60.049 44.000 0.00 0.00 0.00 2.73
967 982 5.163131 ACCAACCACTCAACAAACTATACCT 60.163 40.000 0.00 0.00 0.00 3.08
968 983 5.768164 CCAACCACTCAACAAACTATACCTT 59.232 40.000 0.00 0.00 0.00 3.50
969 984 6.072673 CCAACCACTCAACAAACTATACCTTC 60.073 42.308 0.00 0.00 0.00 3.46
970 985 6.182507 ACCACTCAACAAACTATACCTTCA 57.817 37.500 0.00 0.00 0.00 3.02
971 986 6.231211 ACCACTCAACAAACTATACCTTCAG 58.769 40.000 0.00 0.00 0.00 3.02
972 987 6.042781 ACCACTCAACAAACTATACCTTCAGA 59.957 38.462 0.00 0.00 0.00 3.27
973 988 7.106239 CCACTCAACAAACTATACCTTCAGAT 58.894 38.462 0.00 0.00 0.00 2.90
974 989 7.278868 CCACTCAACAAACTATACCTTCAGATC 59.721 40.741 0.00 0.00 0.00 2.75
975 990 8.037758 CACTCAACAAACTATACCTTCAGATCT 58.962 37.037 0.00 0.00 0.00 2.75
976 991 8.037758 ACTCAACAAACTATACCTTCAGATCTG 58.962 37.037 17.07 17.07 0.00 2.90
977 992 7.907389 TCAACAAACTATACCTTCAGATCTGT 58.093 34.615 21.92 5.72 0.00 3.41
978 993 7.819415 TCAACAAACTATACCTTCAGATCTGTG 59.181 37.037 21.92 15.25 0.00 3.66
979 994 6.109359 ACAAACTATACCTTCAGATCTGTGC 58.891 40.000 21.92 0.00 0.00 4.57
980 995 4.576216 ACTATACCTTCAGATCTGTGCG 57.424 45.455 21.92 12.29 0.00 5.34
981 996 2.231215 ATACCTTCAGATCTGTGCGC 57.769 50.000 21.92 0.00 0.00 6.09
982 997 0.179137 TACCTTCAGATCTGTGCGCG 60.179 55.000 21.92 0.00 0.00 6.86
983 998 2.169789 CCTTCAGATCTGTGCGCGG 61.170 63.158 21.92 12.04 0.00 6.46
984 999 2.806856 CTTCAGATCTGTGCGCGGC 61.807 63.158 21.92 0.00 0.00 6.53
985 1000 3.300934 TTCAGATCTGTGCGCGGCT 62.301 57.895 21.92 0.00 0.00 5.52
986 1001 1.944234 TTCAGATCTGTGCGCGGCTA 61.944 55.000 21.92 0.00 0.00 3.93
987 1002 1.948138 CAGATCTGTGCGCGGCTAG 60.948 63.158 14.95 3.89 0.00 3.42
988 1003 3.333969 GATCTGTGCGCGGCTAGC 61.334 66.667 8.83 6.04 43.95 3.42
989 1004 4.899239 ATCTGTGCGCGGCTAGCC 62.899 66.667 24.75 24.75 44.76 3.93
1008 1023 3.221222 GCTACGGCCATGGAGTCT 58.779 61.111 18.40 0.00 0.00 3.24
1009 1024 1.227380 GCTACGGCCATGGAGTCTG 60.227 63.158 18.40 5.43 0.00 3.51
1010 1025 1.443407 CTACGGCCATGGAGTCTGG 59.557 63.158 18.40 5.14 36.81 3.86
1016 1031 4.147449 CATGGAGTCTGGCGCCGA 62.147 66.667 23.90 19.11 40.18 5.54
1017 1032 4.148825 ATGGAGTCTGGCGCCGAC 62.149 66.667 31.06 31.06 40.18 4.79
1020 1035 4.415332 GAGTCTGGCGCCGACGAA 62.415 66.667 31.25 13.30 43.93 3.85
1021 1036 4.421479 AGTCTGGCGCCGACGAAG 62.421 66.667 31.25 20.90 43.93 3.79
1037 1052 2.327081 GAAGTAGTGTTCGACTGCGA 57.673 50.000 0.00 0.00 46.33 5.10
1078 1093 2.586792 GCAAGATGGACCGCCTCT 59.413 61.111 0.00 0.00 34.31 3.69
1079 1094 1.817099 GCAAGATGGACCGCCTCTG 60.817 63.158 0.00 0.00 34.31 3.35
1080 1095 1.599047 CAAGATGGACCGCCTCTGT 59.401 57.895 0.00 0.00 34.31 3.41
1081 1096 0.460987 CAAGATGGACCGCCTCTGTC 60.461 60.000 0.00 0.00 34.31 3.51
1082 1097 1.949847 AAGATGGACCGCCTCTGTCG 61.950 60.000 0.00 0.00 33.46 4.35
1134 1149 2.752322 CTACCGGCGTCACGTCCAAA 62.752 60.000 6.01 0.00 0.00 3.28
1146 1161 3.700198 GTCCAAAGACGTGGTCCTT 57.300 52.632 0.00 0.00 39.88 3.36
1150 1165 1.202651 CCAAAGACGTGGTCCTTGACT 60.203 52.381 8.31 0.00 36.44 3.41
1152 1167 1.705873 AAGACGTGGTCCTTGACTCT 58.294 50.000 0.00 0.00 32.18 3.24
1154 1169 0.667792 GACGTGGTCCTTGACTCTGC 60.668 60.000 0.00 0.00 32.47 4.26
1178 1193 4.052229 CGTGTCCGTCCGCCTCTT 62.052 66.667 0.00 0.00 0.00 2.85
1187 1202 3.787001 CCGCCTCTTCCTCCCCAC 61.787 72.222 0.00 0.00 0.00 4.61
1190 1205 2.674220 GCCTCTTCCTCCCCACCAG 61.674 68.421 0.00 0.00 0.00 4.00
1193 1211 3.732849 CTTCCTCCCCACCAGCCC 61.733 72.222 0.00 0.00 0.00 5.19
1197 1215 2.693864 CTCCCCACCAGCCCAGAT 60.694 66.667 0.00 0.00 0.00 2.90
1202 1220 2.311854 CCACCAGCCCAGATCCCTT 61.312 63.158 0.00 0.00 0.00 3.95
1216 1234 0.544357 TCCCTTCAAGAAGCTCCCGA 60.544 55.000 4.30 0.00 37.11 5.14
1226 1244 0.684805 AAGCTCCCGATCCTCGTCTT 60.685 55.000 0.00 0.00 38.40 3.01
1236 1254 0.538977 TCCTCGTCTTCTTCCACGGT 60.539 55.000 0.00 0.00 36.64 4.83
1241 1259 2.742372 CTTCTTCCACGGTGGCGG 60.742 66.667 22.42 15.99 37.47 6.13
1288 1306 1.334054 GCAGTACCACAACTACGTCG 58.666 55.000 0.00 0.00 0.00 5.12
1289 1307 1.334054 CAGTACCACAACTACGTCGC 58.666 55.000 0.00 0.00 0.00 5.19
1290 1308 0.110056 AGTACCACAACTACGTCGCG 60.110 55.000 0.00 0.00 0.00 5.87
1332 1350 4.517703 GTCGCCGTCTCCGTCGAG 62.518 72.222 0.00 0.00 45.70 4.04
1341 1359 1.522355 CTCCGTCGAGTACCGCCTA 60.522 63.158 0.00 0.00 38.37 3.93
1492 1516 3.976000 GCGGCAACATGGTGCACA 61.976 61.111 35.07 5.24 46.81 4.57
1495 1519 1.661197 GGCAACATGGTGCACAACG 60.661 57.895 35.07 1.24 46.81 4.10
1497 1521 0.934436 GCAACATGGTGCACAACGTC 60.934 55.000 30.55 0.52 44.29 4.34
1506 1530 0.678950 TGCACAACGTCCTCATGAGA 59.321 50.000 24.62 7.50 0.00 3.27
1510 1534 0.109086 CAACGTCCTCATGAGAGCGT 60.109 55.000 27.03 27.03 40.68 5.07
1516 1540 0.526524 CCTCATGAGAGCGTCGTTCC 60.527 60.000 24.62 0.00 40.68 3.62
1518 1542 0.171231 TCATGAGAGCGTCGTTCCAG 59.829 55.000 5.38 0.00 0.00 3.86
1519 1543 1.153745 ATGAGAGCGTCGTTCCAGC 60.154 57.895 5.38 0.00 0.00 4.85
1521 1545 4.421479 AGAGCGTCGTTCCAGCCG 62.421 66.667 5.38 0.00 0.00 5.52
1545 1572 1.603172 CCGAGAATAGAAGGCGCGATT 60.603 52.381 12.10 2.69 0.00 3.34
1554 1581 0.745845 AAGGCGCGATTCTTCTGCAT 60.746 50.000 12.10 0.00 0.00 3.96
1557 1584 1.156645 GCGCGATTCTTCTGCATCCT 61.157 55.000 12.10 0.00 0.00 3.24
1566 1593 0.690192 TTCTGCATCCTTGGTTCGGA 59.310 50.000 0.00 0.00 34.52 4.55
1569 1596 1.198094 TGCATCCTTGGTTCGGAGGA 61.198 55.000 0.00 0.00 45.57 3.71
1576 1603 1.824658 TGGTTCGGAGGAAACACGT 59.175 52.632 0.00 0.00 44.70 4.49
1577 1604 0.178533 TGGTTCGGAGGAAACACGTT 59.821 50.000 0.00 0.00 44.70 3.99
1578 1605 0.863799 GGTTCGGAGGAAACACGTTC 59.136 55.000 0.00 0.00 39.74 3.95
1587 1614 1.861971 GAAACACGTTCCTCGAAGGT 58.138 50.000 0.00 0.00 40.55 3.50
1627 1654 0.538977 GGACATGGCCATGATCTGGG 60.539 60.000 44.72 22.22 46.06 4.45
1628 1655 0.475475 GACATGGCCATGATCTGGGA 59.525 55.000 44.72 3.19 46.06 4.37
1631 1658 1.133575 CATGGCCATGATCTGGGAGTT 60.134 52.381 37.84 0.00 46.06 3.01
1681 1711 2.038329 ACCCGAGGATGAACCCGA 59.962 61.111 0.00 0.00 40.05 5.14
1710 1740 3.178611 GCCCCGGGGATGGAGAAT 61.179 66.667 44.86 0.00 37.50 2.40
1762 5050 2.925170 AGAAGGACTGGCTGGCGT 60.925 61.111 0.00 0.00 0.00 5.68
1933 5221 3.109547 GCGTCGTGGCGTTCATCA 61.110 61.111 0.00 0.00 0.00 3.07
1934 5222 2.452813 GCGTCGTGGCGTTCATCAT 61.453 57.895 0.00 0.00 0.00 2.45
1935 5223 1.143373 GCGTCGTGGCGTTCATCATA 61.143 55.000 0.00 0.00 0.00 2.15
1976 5331 2.158330 TGCGCGCAACGTAGATCTG 61.158 57.895 34.66 0.00 46.11 2.90
2085 5440 1.590259 GAGTTGGATCTCGCGGCTC 60.590 63.158 6.13 0.02 0.00 4.70
2114 5469 0.541392 AATACATGTGCTCCTCGCCA 59.459 50.000 9.11 0.00 38.05 5.69
2287 5642 2.342648 GAGCGGGTTGGAGAACGT 59.657 61.111 0.00 0.00 32.28 3.99
2300 5655 3.509137 GAACGTGTGGTCGAGCCCA 62.509 63.158 12.85 3.38 36.04 5.36
2309 5664 1.220749 GTCGAGCCCATACTTGCCA 59.779 57.895 0.00 0.00 0.00 4.92
2482 5849 2.027314 GTTGTGCGCCATGTTGCA 59.973 55.556 4.18 5.10 39.13 4.08
2712 6082 1.171308 GACGTAGCTGGTGTACCTGA 58.829 55.000 11.56 0.00 37.15 3.86
2713 6083 1.132643 GACGTAGCTGGTGTACCTGAG 59.867 57.143 11.56 0.00 37.15 3.35
2723 6093 0.116342 TGTACCTGAGGGAGAAGGCA 59.884 55.000 2.38 0.00 37.03 4.75
2854 6224 0.321653 ATGACAACGTCCTTGGAGGC 60.322 55.000 9.03 0.00 34.61 4.70
2858 6228 2.504274 AACGTCCTTGGAGGCGACA 61.504 57.895 14.52 0.00 37.97 4.35
2860 6230 2.741092 GTCCTTGGAGGCGACACA 59.259 61.111 0.00 0.00 34.61 3.72
2937 6307 0.736325 GCCGCTCTTGTACACGATGT 60.736 55.000 2.10 0.00 0.00 3.06
2938 6308 1.269166 CCGCTCTTGTACACGATGTC 58.731 55.000 2.10 0.00 0.00 3.06
2939 6309 1.269166 CGCTCTTGTACACGATGTCC 58.731 55.000 2.10 0.00 0.00 4.02
2940 6310 1.269166 GCTCTTGTACACGATGTCCG 58.731 55.000 2.10 0.00 45.44 4.79
2941 6311 1.909376 CTCTTGTACACGATGTCCGG 58.091 55.000 2.10 0.00 43.93 5.14
2942 6312 1.471287 CTCTTGTACACGATGTCCGGA 59.529 52.381 0.00 0.00 43.93 5.14
2943 6313 2.097036 TCTTGTACACGATGTCCGGAT 58.903 47.619 7.81 0.00 43.93 4.18
2944 6314 2.098607 TCTTGTACACGATGTCCGGATC 59.901 50.000 7.81 0.00 43.93 3.36
2945 6315 0.742505 TGTACACGATGTCCGGATCC 59.257 55.000 7.81 0.00 43.93 3.36
2946 6316 0.742505 GTACACGATGTCCGGATCCA 59.257 55.000 7.81 1.18 43.93 3.41
2947 6317 1.340248 GTACACGATGTCCGGATCCAT 59.660 52.381 7.81 7.47 43.93 3.41
2948 6318 0.104855 ACACGATGTCCGGATCCATG 59.895 55.000 7.81 5.76 43.93 3.66
2949 6319 0.601046 CACGATGTCCGGATCCATGG 60.601 60.000 7.81 11.47 43.93 3.66
2950 6320 1.669115 CGATGTCCGGATCCATGGC 60.669 63.158 7.81 4.07 33.91 4.40
2951 6321 1.669115 GATGTCCGGATCCATGGCG 60.669 63.158 7.81 4.92 0.00 5.69
2952 6322 3.832237 ATGTCCGGATCCATGGCGC 62.832 63.158 7.81 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
291 304 1.062581 AGCCCTCTCCAGCATCTTCTA 60.063 52.381 0.00 0.00 0.00 2.10
567 580 3.238497 CCACCACCCCGACTCACA 61.238 66.667 0.00 0.00 0.00 3.58
718 733 5.533528 GGCCCGATAAATTACACCTGTAAAT 59.466 40.000 2.08 0.00 42.93 1.40
720 735 4.080469 TGGCCCGATAAATTACACCTGTAA 60.080 41.667 0.00 0.43 43.71 2.41
722 737 2.240160 TGGCCCGATAAATTACACCTGT 59.760 45.455 0.00 0.00 0.00 4.00
723 738 2.878406 CTGGCCCGATAAATTACACCTG 59.122 50.000 0.00 0.00 0.00 4.00
725 740 2.927028 ACTGGCCCGATAAATTACACC 58.073 47.619 0.00 0.00 0.00 4.16
726 741 4.510340 CACTACTGGCCCGATAAATTACAC 59.490 45.833 0.00 0.00 0.00 2.90
727 742 4.406326 TCACTACTGGCCCGATAAATTACA 59.594 41.667 0.00 0.00 0.00 2.41
728 743 4.952460 TCACTACTGGCCCGATAAATTAC 58.048 43.478 0.00 0.00 0.00 1.89
729 744 5.818678 ATCACTACTGGCCCGATAAATTA 57.181 39.130 0.00 0.00 0.00 1.40
730 745 4.706842 ATCACTACTGGCCCGATAAATT 57.293 40.909 0.00 0.00 0.00 1.82
731 746 4.706842 AATCACTACTGGCCCGATAAAT 57.293 40.909 0.00 0.00 0.00 1.40
732 747 4.448210 GAAATCACTACTGGCCCGATAAA 58.552 43.478 0.00 0.00 0.00 1.40
733 748 3.181458 GGAAATCACTACTGGCCCGATAA 60.181 47.826 0.00 0.00 0.00 1.75
734 749 2.367567 GGAAATCACTACTGGCCCGATA 59.632 50.000 0.00 0.00 0.00 2.92
735 750 1.141053 GGAAATCACTACTGGCCCGAT 59.859 52.381 0.00 0.00 0.00 4.18
736 751 0.539986 GGAAATCACTACTGGCCCGA 59.460 55.000 0.00 0.00 0.00 5.14
737 752 0.810031 CGGAAATCACTACTGGCCCG 60.810 60.000 0.00 0.00 0.00 6.13
738 753 0.463833 CCGGAAATCACTACTGGCCC 60.464 60.000 0.00 0.00 0.00 5.80
739 754 1.095807 GCCGGAAATCACTACTGGCC 61.096 60.000 5.05 0.00 46.61 5.36
740 755 2.394604 GCCGGAAATCACTACTGGC 58.605 57.895 5.05 0.00 46.40 4.85
741 756 0.810031 CGGCCGGAAATCACTACTGG 60.810 60.000 20.10 0.00 0.00 4.00
742 757 0.174845 TCGGCCGGAAATCACTACTG 59.825 55.000 27.83 0.00 0.00 2.74
743 758 0.899720 TTCGGCCGGAAATCACTACT 59.100 50.000 27.83 0.00 0.00 2.57
744 759 1.664151 CTTTCGGCCGGAAATCACTAC 59.336 52.381 27.83 0.00 43.40 2.73
745 760 2.010043 GCTTTCGGCCGGAAATCACTA 61.010 52.381 27.83 0.00 43.40 2.74
746 761 1.305930 GCTTTCGGCCGGAAATCACT 61.306 55.000 27.83 0.00 43.40 3.41
747 762 1.136774 GCTTTCGGCCGGAAATCAC 59.863 57.895 27.83 8.89 43.40 3.06
748 763 0.891449 TTGCTTTCGGCCGGAAATCA 60.891 50.000 27.83 20.18 43.40 2.57
749 764 0.242555 TTTGCTTTCGGCCGGAAATC 59.757 50.000 27.83 17.68 43.40 2.17
750 765 0.676736 TTTTGCTTTCGGCCGGAAAT 59.323 45.000 27.83 0.00 43.40 2.17
751 766 0.249114 GTTTTGCTTTCGGCCGGAAA 60.249 50.000 27.83 21.57 42.23 3.13
752 767 1.360911 GTTTTGCTTTCGGCCGGAA 59.639 52.632 27.83 23.87 40.92 4.30
753 768 2.899044 CGTTTTGCTTTCGGCCGGA 61.899 57.895 27.83 16.16 40.92 5.14
754 769 2.428403 CGTTTTGCTTTCGGCCGG 60.428 61.111 27.83 10.87 40.92 6.13
755 770 1.724581 GTCGTTTTGCTTTCGGCCG 60.725 57.895 22.12 22.12 40.92 6.13
756 771 1.724581 CGTCGTTTTGCTTTCGGCC 60.725 57.895 0.00 0.00 40.92 6.13
757 772 1.724581 CCGTCGTTTTGCTTTCGGC 60.725 57.895 0.00 0.00 42.22 5.54
758 773 0.383860 GTCCGTCGTTTTGCTTTCGG 60.384 55.000 0.00 0.00 39.40 4.30
759 774 0.716926 CGTCCGTCGTTTTGCTTTCG 60.717 55.000 0.00 0.00 34.52 3.46
760 775 0.383860 CCGTCCGTCGTTTTGCTTTC 60.384 55.000 0.00 0.00 37.94 2.62
761 776 0.810823 TCCGTCCGTCGTTTTGCTTT 60.811 50.000 0.00 0.00 37.94 3.51
762 777 0.810823 TTCCGTCCGTCGTTTTGCTT 60.811 50.000 0.00 0.00 37.94 3.91
763 778 0.810823 TTTCCGTCCGTCGTTTTGCT 60.811 50.000 0.00 0.00 37.94 3.91
764 779 0.383860 CTTTCCGTCCGTCGTTTTGC 60.384 55.000 0.00 0.00 37.94 3.68
765 780 0.233848 CCTTTCCGTCCGTCGTTTTG 59.766 55.000 0.00 0.00 37.94 2.44
766 781 0.179076 ACCTTTCCGTCCGTCGTTTT 60.179 50.000 0.00 0.00 37.94 2.43
767 782 0.877213 CACCTTTCCGTCCGTCGTTT 60.877 55.000 0.00 0.00 37.94 3.60
768 783 1.300388 CACCTTTCCGTCCGTCGTT 60.300 57.895 0.00 0.00 37.94 3.85
769 784 1.172180 TACACCTTTCCGTCCGTCGT 61.172 55.000 0.00 0.00 37.94 4.34
770 785 0.171903 ATACACCTTTCCGTCCGTCG 59.828 55.000 0.00 0.00 39.52 5.12
771 786 1.997606 CAATACACCTTTCCGTCCGTC 59.002 52.381 0.00 0.00 0.00 4.79
772 787 1.345415 ACAATACACCTTTCCGTCCGT 59.655 47.619 0.00 0.00 0.00 4.69
773 788 2.088950 ACAATACACCTTTCCGTCCG 57.911 50.000 0.00 0.00 0.00 4.79
774 789 4.756135 TGTAAACAATACACCTTTCCGTCC 59.244 41.667 0.00 0.00 0.00 4.79
775 790 5.106830 CCTGTAAACAATACACCTTTCCGTC 60.107 44.000 0.00 0.00 0.00 4.79
776 791 4.758165 CCTGTAAACAATACACCTTTCCGT 59.242 41.667 0.00 0.00 0.00 4.69
777 792 4.758165 ACCTGTAAACAATACACCTTTCCG 59.242 41.667 0.00 0.00 0.00 4.30
778 793 5.533528 ACACCTGTAAACAATACACCTTTCC 59.466 40.000 0.00 0.00 0.00 3.13
779 794 6.628919 ACACCTGTAAACAATACACCTTTC 57.371 37.500 0.00 0.00 0.00 2.62
780 795 8.573035 CAATACACCTGTAAACAATACACCTTT 58.427 33.333 0.00 0.00 33.76 3.11
781 796 7.308951 GCAATACACCTGTAAACAATACACCTT 60.309 37.037 0.00 0.00 33.76 3.50
782 797 6.150474 GCAATACACCTGTAAACAATACACCT 59.850 38.462 0.00 0.00 33.76 4.00
783 798 6.150474 AGCAATACACCTGTAAACAATACACC 59.850 38.462 0.00 0.00 33.76 4.16
784 799 7.141100 AGCAATACACCTGTAAACAATACAC 57.859 36.000 0.00 0.00 33.76 2.90
785 800 8.850007 TTAGCAATACACCTGTAAACAATACA 57.150 30.769 0.00 0.00 33.76 2.29
786 801 7.908601 GCTTAGCAATACACCTGTAAACAATAC 59.091 37.037 0.00 0.00 33.76 1.89
787 802 7.608376 TGCTTAGCAATACACCTGTAAACAATA 59.392 33.333 3.67 0.00 34.76 1.90
788 803 6.432783 TGCTTAGCAATACACCTGTAAACAAT 59.567 34.615 3.67 0.00 34.76 2.71
789 804 5.765677 TGCTTAGCAATACACCTGTAAACAA 59.234 36.000 3.67 0.00 34.76 2.83
790 805 5.309638 TGCTTAGCAATACACCTGTAAACA 58.690 37.500 3.67 0.00 34.76 2.83
791 806 5.873179 TGCTTAGCAATACACCTGTAAAC 57.127 39.130 3.67 0.00 34.76 2.01
805 820 3.407698 TGGAATCTCGTTTTGCTTAGCA 58.592 40.909 1.39 1.39 36.47 3.49
806 821 4.406943 CTTGGAATCTCGTTTTGCTTAGC 58.593 43.478 0.00 0.00 0.00 3.09
807 822 4.406943 GCTTGGAATCTCGTTTTGCTTAG 58.593 43.478 0.00 0.00 0.00 2.18
808 823 3.120338 CGCTTGGAATCTCGTTTTGCTTA 60.120 43.478 0.00 0.00 0.00 3.09
809 824 2.350772 CGCTTGGAATCTCGTTTTGCTT 60.351 45.455 0.00 0.00 0.00 3.91
810 825 1.197721 CGCTTGGAATCTCGTTTTGCT 59.802 47.619 0.00 0.00 0.00 3.91
811 826 1.606606 CGCTTGGAATCTCGTTTTGC 58.393 50.000 0.00 0.00 0.00 3.68
812 827 1.606606 GCGCTTGGAATCTCGTTTTG 58.393 50.000 0.00 0.00 0.00 2.44
813 828 0.165944 CGCGCTTGGAATCTCGTTTT 59.834 50.000 5.56 0.00 0.00 2.43
814 829 1.787847 CGCGCTTGGAATCTCGTTT 59.212 52.632 5.56 0.00 0.00 3.60
815 830 2.740714 GCGCGCTTGGAATCTCGTT 61.741 57.895 26.67 0.00 0.00 3.85
816 831 3.188786 GCGCGCTTGGAATCTCGT 61.189 61.111 26.67 0.00 0.00 4.18
817 832 3.929948 GGCGCGCTTGGAATCTCG 61.930 66.667 32.29 0.00 0.00 4.04
818 833 2.644555 TAGGGCGCGCTTGGAATCTC 62.645 60.000 32.72 10.56 0.00 2.75
819 834 2.252072 TTAGGGCGCGCTTGGAATCT 62.252 55.000 32.72 17.54 0.00 2.40
820 835 1.776034 CTTAGGGCGCGCTTGGAATC 61.776 60.000 32.72 12.21 0.00 2.52
821 836 1.819632 CTTAGGGCGCGCTTGGAAT 60.820 57.895 32.72 9.72 0.00 3.01
822 837 2.435938 CTTAGGGCGCGCTTGGAA 60.436 61.111 32.72 19.12 0.00 3.53
832 847 1.407025 GGTCTGGTTACAGCTTAGGGC 60.407 57.143 0.00 0.00 44.54 5.19
833 848 1.906574 TGGTCTGGTTACAGCTTAGGG 59.093 52.381 0.00 0.00 44.54 3.53
834 849 3.008049 AGTTGGTCTGGTTACAGCTTAGG 59.992 47.826 0.00 0.00 44.54 2.69
835 850 4.273148 AGTTGGTCTGGTTACAGCTTAG 57.727 45.455 0.00 0.00 44.54 2.18
836 851 4.347000 AGAAGTTGGTCTGGTTACAGCTTA 59.653 41.667 0.00 0.00 44.54 3.09
837 852 3.136626 AGAAGTTGGTCTGGTTACAGCTT 59.863 43.478 0.00 0.00 44.54 3.74
838 853 2.706190 AGAAGTTGGTCTGGTTACAGCT 59.294 45.455 0.00 0.00 44.54 4.24
839 854 3.067833 GAGAAGTTGGTCTGGTTACAGC 58.932 50.000 0.00 0.00 44.54 4.40
840 855 4.336889 TGAGAAGTTGGTCTGGTTACAG 57.663 45.455 0.00 0.00 46.30 2.74
841 856 4.346709 TCATGAGAAGTTGGTCTGGTTACA 59.653 41.667 0.00 0.00 0.00 2.41
842 857 4.691216 GTCATGAGAAGTTGGTCTGGTTAC 59.309 45.833 0.00 0.00 0.00 2.50
843 858 4.560716 CGTCATGAGAAGTTGGTCTGGTTA 60.561 45.833 0.00 0.00 0.00 2.85
844 859 3.744660 GTCATGAGAAGTTGGTCTGGTT 58.255 45.455 0.00 0.00 0.00 3.67
845 860 2.289072 CGTCATGAGAAGTTGGTCTGGT 60.289 50.000 0.00 0.00 0.00 4.00
846 861 2.289072 ACGTCATGAGAAGTTGGTCTGG 60.289 50.000 0.00 0.00 32.34 3.86
847 862 3.032017 ACGTCATGAGAAGTTGGTCTG 57.968 47.619 0.00 0.00 32.34 3.51
848 863 3.827302 ACTACGTCATGAGAAGTTGGTCT 59.173 43.478 0.00 0.00 37.62 3.85
849 864 4.175787 ACTACGTCATGAGAAGTTGGTC 57.824 45.455 0.00 0.00 37.62 4.02
850 865 5.008331 TCTACTACGTCATGAGAAGTTGGT 58.992 41.667 9.19 8.62 37.62 3.67
851 866 5.124138 AGTCTACTACGTCATGAGAAGTTGG 59.876 44.000 9.19 4.88 37.62 3.77
852 867 6.184580 AGTCTACTACGTCATGAGAAGTTG 57.815 41.667 9.19 7.99 37.62 3.16
853 868 7.306205 GTAGTCTACTACGTCATGAGAAGTT 57.694 40.000 9.19 0.00 39.36 2.66
854 869 6.907206 GTAGTCTACTACGTCATGAGAAGT 57.093 41.667 0.00 2.63 39.36 3.01
866 881 5.900865 AAGTTGGAGCTGTAGTCTACTAC 57.099 43.478 12.40 12.40 46.78 2.73
867 882 6.008331 TGAAAGTTGGAGCTGTAGTCTACTA 58.992 40.000 11.28 0.00 0.00 1.82
868 883 4.833380 TGAAAGTTGGAGCTGTAGTCTACT 59.167 41.667 11.28 0.00 0.00 2.57
869 884 4.924462 GTGAAAGTTGGAGCTGTAGTCTAC 59.076 45.833 2.81 2.81 0.00 2.59
870 885 4.587262 TGTGAAAGTTGGAGCTGTAGTCTA 59.413 41.667 0.00 0.00 0.00 2.59
871 886 3.388024 TGTGAAAGTTGGAGCTGTAGTCT 59.612 43.478 0.00 0.00 0.00 3.24
872 887 3.495001 GTGTGAAAGTTGGAGCTGTAGTC 59.505 47.826 0.00 0.00 0.00 2.59
873 888 3.134804 AGTGTGAAAGTTGGAGCTGTAGT 59.865 43.478 0.00 0.00 0.00 2.73
874 889 3.733337 AGTGTGAAAGTTGGAGCTGTAG 58.267 45.455 0.00 0.00 0.00 2.74
875 890 3.838244 AGTGTGAAAGTTGGAGCTGTA 57.162 42.857 0.00 0.00 0.00 2.74
876 891 2.717639 AGTGTGAAAGTTGGAGCTGT 57.282 45.000 0.00 0.00 0.00 4.40
877 892 3.378112 TGAAAGTGTGAAAGTTGGAGCTG 59.622 43.478 0.00 0.00 0.00 4.24
878 893 3.620488 TGAAAGTGTGAAAGTTGGAGCT 58.380 40.909 0.00 0.00 0.00 4.09
879 894 4.142381 ACTTGAAAGTGTGAAAGTTGGAGC 60.142 41.667 0.00 0.00 37.98 4.70
880 895 5.355350 AGACTTGAAAGTGTGAAAGTTGGAG 59.645 40.000 0.00 0.00 39.88 3.86
881 896 5.253330 AGACTTGAAAGTGTGAAAGTTGGA 58.747 37.500 0.00 0.00 39.88 3.53
882 897 5.567138 AGACTTGAAAGTGTGAAAGTTGG 57.433 39.130 0.00 0.00 39.88 3.77
883 898 6.524586 GTGAAGACTTGAAAGTGTGAAAGTTG 59.475 38.462 0.00 0.00 39.88 3.16
884 899 6.206634 TGTGAAGACTTGAAAGTGTGAAAGTT 59.793 34.615 0.00 0.00 39.88 2.66
885 900 5.705441 TGTGAAGACTTGAAAGTGTGAAAGT 59.295 36.000 0.00 0.00 39.88 2.66
886 901 6.024049 GTGTGAAGACTTGAAAGTGTGAAAG 58.976 40.000 0.00 0.00 39.88 2.62
887 902 5.705441 AGTGTGAAGACTTGAAAGTGTGAAA 59.295 36.000 0.00 0.00 39.88 2.69
888 903 5.245531 AGTGTGAAGACTTGAAAGTGTGAA 58.754 37.500 0.00 0.00 39.88 3.18
889 904 4.832248 AGTGTGAAGACTTGAAAGTGTGA 58.168 39.130 0.00 0.00 39.88 3.58
890 905 5.551760 AAGTGTGAAGACTTGAAAGTGTG 57.448 39.130 0.00 0.00 39.88 3.82
891 906 5.705441 TGAAAGTGTGAAGACTTGAAAGTGT 59.295 36.000 0.00 0.00 39.88 3.55
892 907 6.182039 TGAAAGTGTGAAGACTTGAAAGTG 57.818 37.500 0.00 0.00 39.88 3.16
893 908 6.431234 ACTTGAAAGTGTGAAGACTTGAAAGT 59.569 34.615 11.83 11.83 38.91 2.66
894 909 6.846350 ACTTGAAAGTGTGAAGACTTGAAAG 58.154 36.000 0.00 10.97 37.98 2.62
895 910 6.128007 GGACTTGAAAGTGTGAAGACTTGAAA 60.128 38.462 0.00 0.00 39.88 2.69
896 911 5.354234 GGACTTGAAAGTGTGAAGACTTGAA 59.646 40.000 0.00 0.00 39.88 2.69
897 912 4.876107 GGACTTGAAAGTGTGAAGACTTGA 59.124 41.667 0.00 0.00 39.88 3.02
898 913 4.635765 TGGACTTGAAAGTGTGAAGACTTG 59.364 41.667 0.00 0.00 39.88 3.16
899 914 4.843728 TGGACTTGAAAGTGTGAAGACTT 58.156 39.130 0.00 0.00 39.88 3.01
900 915 4.446371 CTGGACTTGAAAGTGTGAAGACT 58.554 43.478 0.00 0.00 39.88 3.24
901 916 3.002759 GCTGGACTTGAAAGTGTGAAGAC 59.997 47.826 0.00 0.00 39.88 3.01
902 917 3.206150 GCTGGACTTGAAAGTGTGAAGA 58.794 45.455 0.00 0.00 39.88 2.87
903 918 2.945008 TGCTGGACTTGAAAGTGTGAAG 59.055 45.455 0.00 0.00 39.88 3.02
904 919 2.682856 GTGCTGGACTTGAAAGTGTGAA 59.317 45.455 0.00 0.00 39.88 3.18
905 920 2.092968 AGTGCTGGACTTGAAAGTGTGA 60.093 45.455 0.00 0.00 39.88 3.58
906 921 2.292267 AGTGCTGGACTTGAAAGTGTG 58.708 47.619 0.00 0.00 39.88 3.82
907 922 2.717639 AGTGCTGGACTTGAAAGTGT 57.282 45.000 0.00 0.00 39.88 3.55
908 923 3.733337 ACTAGTGCTGGACTTGAAAGTG 58.267 45.455 16.46 0.00 39.88 3.16
909 924 3.643792 AGACTAGTGCTGGACTTGAAAGT 59.356 43.478 16.46 9.60 43.16 2.66
910 925 4.021544 AGAGACTAGTGCTGGACTTGAAAG 60.022 45.833 16.46 6.53 35.96 2.62
911 926 3.898123 AGAGACTAGTGCTGGACTTGAAA 59.102 43.478 16.46 0.00 35.96 2.69
912 927 3.256879 CAGAGACTAGTGCTGGACTTGAA 59.743 47.826 16.46 0.00 35.96 2.69
913 928 2.822561 CAGAGACTAGTGCTGGACTTGA 59.177 50.000 16.46 0.00 35.96 3.02
914 929 2.673610 GCAGAGACTAGTGCTGGACTTG 60.674 54.545 18.82 8.24 36.71 3.16
915 930 1.548269 GCAGAGACTAGTGCTGGACTT 59.452 52.381 18.82 0.00 36.71 3.01
916 931 1.181786 GCAGAGACTAGTGCTGGACT 58.818 55.000 18.82 7.10 36.71 3.85
917 932 0.174617 GGCAGAGACTAGTGCTGGAC 59.825 60.000 18.82 7.53 39.76 4.02
918 933 0.251787 TGGCAGAGACTAGTGCTGGA 60.252 55.000 18.82 0.00 39.76 3.86
919 934 0.108424 GTGGCAGAGACTAGTGCTGG 60.108 60.000 18.82 1.79 39.76 4.85
920 935 0.894141 AGTGGCAGAGACTAGTGCTG 59.106 55.000 14.92 14.92 39.76 4.41
921 936 0.894141 CAGTGGCAGAGACTAGTGCT 59.106 55.000 0.00 0.00 39.76 4.40
922 937 0.739112 GCAGTGGCAGAGACTAGTGC 60.739 60.000 0.00 0.00 39.78 4.40
923 938 0.108424 GGCAGTGGCAGAGACTAGTG 60.108 60.000 12.58 0.00 43.71 2.74
924 939 0.542938 TGGCAGTGGCAGAGACTAGT 60.543 55.000 16.56 0.00 43.71 2.57
925 940 0.108424 GTGGCAGTGGCAGAGACTAG 60.108 60.000 21.25 0.00 43.71 2.57
926 941 1.544825 GGTGGCAGTGGCAGAGACTA 61.545 60.000 21.25 0.00 43.71 2.59
927 942 2.746359 GTGGCAGTGGCAGAGACT 59.254 61.111 21.25 0.00 43.71 3.24
928 943 2.359230 GGTGGCAGTGGCAGAGAC 60.359 66.667 21.25 8.09 43.71 3.36
929 944 2.451191 TTGGTGGCAGTGGCAGAGA 61.451 57.895 21.25 5.66 43.71 3.10
930 945 2.113774 TTGGTGGCAGTGGCAGAG 59.886 61.111 21.25 0.00 43.71 3.35
931 946 2.203337 GTTGGTGGCAGTGGCAGA 60.203 61.111 21.25 6.95 43.71 4.26
932 947 3.297620 GGTTGGTGGCAGTGGCAG 61.298 66.667 21.25 0.00 43.71 4.85
933 948 4.134785 TGGTTGGTGGCAGTGGCA 62.135 61.111 16.56 16.56 43.71 4.92
934 949 3.605664 GTGGTTGGTGGCAGTGGC 61.606 66.667 10.30 10.30 40.13 5.01
935 950 1.898574 GAGTGGTTGGTGGCAGTGG 60.899 63.158 0.00 0.00 0.00 4.00
936 951 0.751277 TTGAGTGGTTGGTGGCAGTG 60.751 55.000 0.00 0.00 0.00 3.66
937 952 0.751643 GTTGAGTGGTTGGTGGCAGT 60.752 55.000 0.00 0.00 0.00 4.40
938 953 0.751277 TGTTGAGTGGTTGGTGGCAG 60.751 55.000 0.00 0.00 0.00 4.85
939 954 0.323816 TTGTTGAGTGGTTGGTGGCA 60.324 50.000 0.00 0.00 0.00 4.92
940 955 0.820871 TTTGTTGAGTGGTTGGTGGC 59.179 50.000 0.00 0.00 0.00 5.01
941 956 2.099405 AGTTTGTTGAGTGGTTGGTGG 58.901 47.619 0.00 0.00 0.00 4.61
942 957 5.048991 GGTATAGTTTGTTGAGTGGTTGGTG 60.049 44.000 0.00 0.00 0.00 4.17
943 958 5.067954 GGTATAGTTTGTTGAGTGGTTGGT 58.932 41.667 0.00 0.00 0.00 3.67
944 959 5.313712 AGGTATAGTTTGTTGAGTGGTTGG 58.686 41.667 0.00 0.00 0.00 3.77
945 960 6.485313 TGAAGGTATAGTTTGTTGAGTGGTTG 59.515 38.462 0.00 0.00 0.00 3.77
946 961 6.597562 TGAAGGTATAGTTTGTTGAGTGGTT 58.402 36.000 0.00 0.00 0.00 3.67
947 962 6.042781 TCTGAAGGTATAGTTTGTTGAGTGGT 59.957 38.462 0.00 0.00 0.00 4.16
948 963 6.464222 TCTGAAGGTATAGTTTGTTGAGTGG 58.536 40.000 0.00 0.00 0.00 4.00
949 964 8.037758 AGATCTGAAGGTATAGTTTGTTGAGTG 58.962 37.037 0.00 0.00 0.00 3.51
950 965 8.037758 CAGATCTGAAGGTATAGTTTGTTGAGT 58.962 37.037 18.34 0.00 0.00 3.41
951 966 8.037758 ACAGATCTGAAGGTATAGTTTGTTGAG 58.962 37.037 29.27 0.00 0.00 3.02
952 967 7.819415 CACAGATCTGAAGGTATAGTTTGTTGA 59.181 37.037 29.27 0.00 0.00 3.18
953 968 7.413438 GCACAGATCTGAAGGTATAGTTTGTTG 60.413 40.741 29.27 11.47 0.00 3.33
954 969 6.595716 GCACAGATCTGAAGGTATAGTTTGTT 59.404 38.462 29.27 0.00 0.00 2.83
955 970 6.109359 GCACAGATCTGAAGGTATAGTTTGT 58.891 40.000 29.27 0.00 0.00 2.83
956 971 5.233050 CGCACAGATCTGAAGGTATAGTTTG 59.767 44.000 29.27 12.70 0.00 2.93
957 972 5.352284 CGCACAGATCTGAAGGTATAGTTT 58.648 41.667 29.27 0.00 0.00 2.66
958 973 4.737946 GCGCACAGATCTGAAGGTATAGTT 60.738 45.833 29.27 0.00 0.00 2.24
959 974 3.243569 GCGCACAGATCTGAAGGTATAGT 60.244 47.826 29.27 0.00 0.00 2.12
960 975 3.312828 GCGCACAGATCTGAAGGTATAG 58.687 50.000 29.27 11.36 0.00 1.31
961 976 2.287608 CGCGCACAGATCTGAAGGTATA 60.288 50.000 29.27 0.00 0.00 1.47
962 977 1.536922 CGCGCACAGATCTGAAGGTAT 60.537 52.381 29.27 2.25 0.00 2.73
963 978 0.179137 CGCGCACAGATCTGAAGGTA 60.179 55.000 29.27 0.00 0.00 3.08
964 979 1.446792 CGCGCACAGATCTGAAGGT 60.447 57.895 29.27 3.48 0.00 3.50
965 980 2.169789 CCGCGCACAGATCTGAAGG 61.170 63.158 29.27 18.07 0.00 3.46
966 981 2.806856 GCCGCGCACAGATCTGAAG 61.807 63.158 29.27 20.18 0.00 3.02
967 982 1.944234 TAGCCGCGCACAGATCTGAA 61.944 55.000 29.27 0.35 0.00 3.02
968 983 2.341807 CTAGCCGCGCACAGATCTGA 62.342 60.000 29.27 2.20 0.00 3.27
969 984 1.948138 CTAGCCGCGCACAGATCTG 60.948 63.158 21.37 21.37 0.00 2.90
970 985 2.415010 CTAGCCGCGCACAGATCT 59.585 61.111 8.75 0.00 0.00 2.75
971 986 3.333969 GCTAGCCGCGCACAGATC 61.334 66.667 8.75 0.00 0.00 2.75
972 987 4.899239 GGCTAGCCGCGCACAGAT 62.899 66.667 20.16 0.00 40.44 2.90
991 1006 1.227380 CAGACTCCATGGCCGTAGC 60.227 63.158 6.96 0.00 38.76 3.58
992 1007 1.443407 CCAGACTCCATGGCCGTAG 59.557 63.158 6.96 1.07 0.00 3.51
993 1008 3.628989 CCAGACTCCATGGCCGTA 58.371 61.111 6.96 0.00 0.00 4.02
999 1014 4.147449 TCGGCGCCAGACTCCATG 62.147 66.667 28.98 6.54 0.00 3.66
1000 1015 4.148825 GTCGGCGCCAGACTCCAT 62.149 66.667 30.94 0.00 35.84 3.41
1003 1018 4.415332 TTCGTCGGCGCCAGACTC 62.415 66.667 32.91 18.46 36.53 3.36
1004 1019 4.421479 CTTCGTCGGCGCCAGACT 62.421 66.667 32.91 0.00 36.53 3.24
1005 1020 3.332493 TACTTCGTCGGCGCCAGAC 62.332 63.158 29.50 29.50 38.14 3.51
1006 1021 3.047718 CTACTTCGTCGGCGCCAGA 62.048 63.158 28.98 21.43 38.14 3.86
1007 1022 2.579787 CTACTTCGTCGGCGCCAG 60.580 66.667 28.98 18.39 38.14 4.85
1008 1023 3.367743 ACTACTTCGTCGGCGCCA 61.368 61.111 28.98 11.20 38.14 5.69
1009 1024 2.879462 CACTACTTCGTCGGCGCC 60.879 66.667 19.07 19.07 38.14 6.53
1010 1025 1.671880 GAACACTACTTCGTCGGCGC 61.672 60.000 3.52 0.00 38.14 6.53
1011 1026 1.393597 CGAACACTACTTCGTCGGCG 61.394 60.000 1.15 1.15 38.58 6.46
1012 1027 0.110056 TCGAACACTACTTCGTCGGC 60.110 55.000 0.00 0.00 42.97 5.54
1013 1028 1.196354 AGTCGAACACTACTTCGTCGG 59.804 52.381 0.00 0.00 42.97 4.79
1014 1029 2.231693 CAGTCGAACACTACTTCGTCG 58.768 52.381 0.00 0.00 42.97 5.12
1015 1030 1.977412 GCAGTCGAACACTACTTCGTC 59.023 52.381 0.00 0.00 42.97 4.20
1016 1031 1.662309 CGCAGTCGAACACTACTTCGT 60.662 52.381 0.00 0.00 42.97 3.85
1017 1032 0.975544 CGCAGTCGAACACTACTTCG 59.024 55.000 0.00 0.00 43.65 3.79
1018 1033 2.327081 TCGCAGTCGAACACTACTTC 57.673 50.000 0.00 0.00 42.44 3.01
1029 1044 4.286967 CGGTAGTCATCGCAGTCG 57.713 61.111 0.00 0.00 0.00 4.18
1035 1050 2.477357 CCGGTATATGCGGTAGTCATCG 60.477 54.545 0.00 0.00 0.00 3.84
1036 1051 2.751259 TCCGGTATATGCGGTAGTCATC 59.249 50.000 0.00 0.00 0.00 2.92
1037 1052 2.753452 CTCCGGTATATGCGGTAGTCAT 59.247 50.000 0.00 0.00 0.00 3.06
1038 1053 2.156917 CTCCGGTATATGCGGTAGTCA 58.843 52.381 0.00 0.00 0.00 3.41
1039 1054 1.135460 GCTCCGGTATATGCGGTAGTC 60.135 57.143 0.00 0.00 0.00 2.59
1043 1058 2.649034 CGCTCCGGTATATGCGGT 59.351 61.111 0.00 0.00 43.97 5.68
1054 1069 2.892425 GTCCATCTTGCCGCTCCG 60.892 66.667 0.00 0.00 0.00 4.63
1116 1131 2.752322 CTTTGGACGTGACGCCGGTA 62.752 60.000 4.25 0.00 0.00 4.02
1128 1143 1.202604 TCAAGGACCACGTCTTTGGAC 60.203 52.381 14.34 0.00 45.48 4.02
1134 1149 0.962489 CAGAGTCAAGGACCACGTCT 59.038 55.000 0.00 0.00 32.18 4.18
1140 1155 1.003233 GGTGGCAGAGTCAAGGACC 60.003 63.158 0.00 0.00 32.18 4.46
1164 1179 3.066233 GAGGAAGAGGCGGACGGAC 62.066 68.421 0.00 0.00 0.00 4.79
1170 1185 3.787001 GTGGGGAGGAAGAGGCGG 61.787 72.222 0.00 0.00 0.00 6.13
1187 1202 0.106819 CTTGAAGGGATCTGGGCTGG 60.107 60.000 0.00 0.00 0.00 4.85
1190 1205 2.021208 GCTTCTTGAAGGGATCTGGGC 61.021 57.143 11.70 0.00 0.00 5.36
1193 1211 2.421248 GGGAGCTTCTTGAAGGGATCTG 60.421 54.545 11.70 0.00 0.00 2.90
1197 1215 0.544357 TCGGGAGCTTCTTGAAGGGA 60.544 55.000 11.70 0.00 0.00 4.20
1202 1220 1.115467 GAGGATCGGGAGCTTCTTGA 58.885 55.000 0.00 0.00 0.00 3.02
1216 1234 0.818296 CCGTGGAAGAAGACGAGGAT 59.182 55.000 0.00 0.00 37.81 3.24
1241 1259 2.100603 CCGACTCGACGAGGAAGC 59.899 66.667 27.39 13.13 33.35 3.86
1249 1267 4.176851 GGAGACGGCCGACTCGAC 62.177 72.222 38.17 27.13 37.69 4.20
1262 1280 1.534476 TTGTGGTACTGCGGGGAGA 60.534 57.895 0.00 0.00 0.00 3.71
1478 1502 0.934436 GACGTTGTGCACCATGTTGC 60.934 55.000 16.18 8.51 43.31 4.17
1485 1509 0.602638 TCATGAGGACGTTGTGCACC 60.603 55.000 15.69 0.00 0.00 5.01
1492 1516 0.171455 GACGCTCTCATGAGGACGTT 59.829 55.000 30.90 20.61 38.48 3.99
1495 1519 0.171455 AACGACGCTCTCATGAGGAC 59.829 55.000 22.42 13.43 40.53 3.85
1497 1521 0.526524 GGAACGACGCTCTCATGAGG 60.527 60.000 22.42 13.87 40.53 3.86
1518 1542 3.785189 TTCTATTCTCGGCGCCGGC 62.785 63.158 44.95 19.07 40.25 6.13
1519 1543 1.661821 CTTCTATTCTCGGCGCCGG 60.662 63.158 44.95 34.43 40.25 6.13
1521 1545 1.956678 GCCTTCTATTCTCGGCGCC 60.957 63.158 19.07 19.07 32.22 6.53
1524 1548 2.303676 CGCGCCTTCTATTCTCGGC 61.304 63.158 0.00 0.00 39.14 5.54
1536 1563 1.153289 ATGCAGAAGAATCGCGCCT 60.153 52.632 0.00 0.00 0.00 5.52
1545 1572 1.339055 CCGAACCAAGGATGCAGAAGA 60.339 52.381 0.00 0.00 0.00 2.87
1554 1581 1.133363 TGTTTCCTCCGAACCAAGGA 58.867 50.000 0.00 0.00 39.94 3.36
1557 1584 0.178533 ACGTGTTTCCTCCGAACCAA 59.821 50.000 0.00 0.00 0.00 3.67
1569 1596 1.137479 TCACCTTCGAGGAACGTGTTT 59.863 47.619 7.76 0.00 37.67 2.83
1579 1606 2.492090 CTCGGCCTCACCTTCGAG 59.508 66.667 0.00 0.00 42.09 4.04
1617 1644 0.179100 ACGCGAACTCCCAGATCATG 60.179 55.000 15.93 0.00 0.00 3.07
1695 1725 2.062070 GAGATTCTCCATCCCCGGG 58.938 63.158 15.80 15.80 31.20 5.73
1762 5050 1.913951 TAGTACGCTCGGTCCCTGGA 61.914 60.000 0.00 0.00 0.00 3.86
1976 5331 3.809832 CCAGTCCATCGGATTGTAACATC 59.190 47.826 5.01 0.00 37.68 3.06
2085 5440 6.294473 AGGAGCACATGTATTATTTCTCCAG 58.706 40.000 0.00 0.00 40.84 3.86
2287 5642 0.249120 CAAGTATGGGCTCGACCACA 59.751 55.000 0.00 0.00 44.72 4.17
2350 5711 4.351938 CGTCGGAAGGCACGGACA 62.352 66.667 17.05 0.00 39.12 4.02
2712 6082 1.684049 CCGAGTCTGCCTTCTCCCT 60.684 63.158 0.00 0.00 0.00 4.20
2713 6083 2.896443 CCGAGTCTGCCTTCTCCC 59.104 66.667 0.00 0.00 0.00 4.30
2723 6093 2.484203 GCTTACGTCGCCGAGTCT 59.516 61.111 0.00 0.00 37.88 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.