Multiple sequence alignment - TraesCS5B01G239800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G239800 chr5B 100.000 7252 0 0 1 7252 419993780 420001031 0.000000e+00 13393.0
1 TraesCS5B01G239800 chr5D 96.829 2933 70 7 4342 7251 355203306 355206238 0.000000e+00 4879.0
2 TraesCS5B01G239800 chr5D 95.247 1620 34 16 2230 3821 355199974 355201578 0.000000e+00 2525.0
3 TraesCS5B01G239800 chr5D 95.367 626 23 4 1608 2230 355199223 355199845 0.000000e+00 990.0
4 TraesCS5B01G239800 chr5D 88.701 531 36 9 335 855 355197846 355198362 1.720000e-175 627.0
5 TraesCS5B01G239800 chr5D 91.098 337 30 0 1 337 355189762 355190098 2.380000e-124 457.0
6 TraesCS5B01G239800 chr5D 91.935 310 19 2 951 1259 355198475 355198779 5.200000e-116 429.0
7 TraesCS5B01G239800 chr5D 93.238 281 15 2 1332 1611 355198902 355199179 1.880000e-110 411.0
8 TraesCS5B01G239800 chr5D 91.525 118 7 1 4165 4279 93068674 93068557 7.530000e-35 159.0
9 TraesCS5B01G239800 chr5A 96.149 2908 88 8 4342 7226 457435489 457438395 0.000000e+00 4728.0
10 TraesCS5B01G239800 chr5A 94.868 1520 37 17 2228 3722 457432345 457433848 0.000000e+00 2337.0
11 TraesCS5B01G239800 chr5A 80.701 1855 308 33 4617 6432 705844083 705842240 0.000000e+00 1397.0
12 TraesCS5B01G239800 chr5A 86.612 859 53 30 413 1259 457430159 457430967 0.000000e+00 893.0
13 TraesCS5B01G239800 chr5A 95.935 369 15 0 1861 2229 457431849 457432217 3.740000e-167 599.0
14 TraesCS5B01G239800 chr5A 93.863 277 13 2 1332 1608 457431090 457431362 1.460000e-111 414.0
15 TraesCS5B01G239800 chr5A 93.750 272 13 3 1608 1877 457431411 457431680 8.760000e-109 405.0
16 TraesCS5B01G239800 chr5A 92.254 142 5 4 3686 3821 457433843 457433984 5.740000e-46 196.0
17 TraesCS5B01G239800 chr5A 90.769 65 5 1 1255 1319 457430991 457431054 1.300000e-12 86.1
18 TraesCS5B01G239800 chr6A 83.582 1742 247 24 4543 6256 572136839 572138569 0.000000e+00 1596.0
19 TraesCS5B01G239800 chr6A 79.242 1609 277 39 4543 6127 158909641 158911216 0.000000e+00 1068.0
20 TraesCS5B01G239800 chr6A 80.166 963 145 28 2231 3171 572134929 572135867 0.000000e+00 678.0
21 TraesCS5B01G239800 chr6A 79.514 288 40 12 2231 2511 158907263 158907538 3.450000e-43 187.0
22 TraesCS5B01G239800 chr6A 87.879 132 11 3 4162 4290 65859050 65859179 4.530000e-32 150.0
23 TraesCS5B01G239800 chr6A 91.026 78 5 2 4420 4497 338522191 338522266 3.580000e-18 104.0
24 TraesCS5B01G239800 chr6D 83.190 1743 249 27 4543 6256 427483487 427485214 0.000000e+00 1555.0
25 TraesCS5B01G239800 chr6D 79.675 1599 265 43 4553 6127 120650788 120652350 0.000000e+00 1098.0
26 TraesCS5B01G239800 chr6D 79.814 966 143 30 2231 3171 427481511 427482449 0.000000e+00 656.0
27 TraesCS5B01G239800 chr6D 88.017 459 31 14 3762 4214 48675329 48674889 8.340000e-144 521.0
28 TraesCS5B01G239800 chr6D 89.147 129 10 2 4165 4290 48674885 48674758 2.710000e-34 158.0
29 TraesCS5B01G239800 chr6B 84.178 1599 220 22 4683 6256 643264124 643265714 0.000000e+00 1520.0
30 TraesCS5B01G239800 chr6B 80.882 884 124 28 2309 3171 643262501 643263360 0.000000e+00 654.0
31 TraesCS5B01G239800 chr6B 77.778 288 45 12 2231 2511 212629269 212628994 7.530000e-35 159.0
32 TraesCS5B01G239800 chr6B 73.561 469 82 27 3266 3694 88219790 88219324 2.730000e-29 141.0
33 TraesCS5B01G239800 chr4B 81.429 1847 301 28 4618 6432 625975191 625977027 0.000000e+00 1472.0
34 TraesCS5B01G239800 chr4B 80.593 1855 310 34 4617 6432 665877098 665875255 0.000000e+00 1386.0
35 TraesCS5B01G239800 chr4B 83.688 141 16 5 3340 3473 665557791 665557931 7.640000e-25 126.0
36 TraesCS5B01G239800 chr4B 92.308 78 4 2 4420 4497 209143060 209142985 7.690000e-20 110.0
37 TraesCS5B01G239800 chr4B 83.810 105 13 3 3549 3649 625974591 625974695 5.990000e-16 97.1
38 TraesCS5B01G239800 chr4B 81.818 110 16 3 3546 3651 665558019 665558128 1.000000e-13 89.8
39 TraesCS5B01G239800 chrUn 80.445 1933 320 40 4543 6432 108321644 108323561 0.000000e+00 1423.0
40 TraesCS5B01G239800 chrUn 91.026 78 5 2 4420 4497 438987382 438987457 3.580000e-18 104.0
41 TraesCS5B01G239800 chr2A 87.281 456 34 10 3765 4214 73547568 73547131 3.910000e-137 499.0
42 TraesCS5B01G239800 chr2A 86.551 461 37 16 3761 4214 719683055 719682613 1.090000e-132 484.0
43 TraesCS5B01G239800 chr2A 85.590 458 41 12 3764 4214 654384061 654383622 2.380000e-124 457.0
44 TraesCS5B01G239800 chr2A 92.308 78 4 2 4420 4497 423426735 423426810 7.690000e-20 110.0
45 TraesCS5B01G239800 chr1D 86.551 461 35 12 3760 4214 10600413 10600852 3.930000e-132 483.0
46 TraesCS5B01G239800 chr2D 85.897 468 40 14 3753 4214 317494395 317494842 6.580000e-130 475.0
47 TraesCS5B01G239800 chr2D 85.931 462 40 12 3759 4214 516912964 516913406 3.060000e-128 470.0
48 TraesCS5B01G239800 chr2D 82.892 567 46 25 3758 4289 70375458 70376008 5.130000e-126 462.0
49 TraesCS5B01G239800 chr2D 92.308 78 4 2 4420 4497 92861493 92861568 7.690000e-20 110.0
50 TraesCS5B01G239800 chr4D 85.961 463 42 16 3758 4214 125783649 125784094 2.370000e-129 473.0
51 TraesCS5B01G239800 chr4D 91.026 78 5 2 4420 4497 123585118 123585193 3.580000e-18 104.0
52 TraesCS5B01G239800 chr7A 85.745 463 42 16 3758 4214 512187466 512187022 1.100000e-127 468.0
53 TraesCS5B01G239800 chr7A 90.000 130 9 2 4162 4288 645907273 645907401 1.620000e-36 165.0
54 TraesCS5B01G239800 chr7A 90.833 120 8 1 4162 4278 585121444 585121563 2.710000e-34 158.0
55 TraesCS5B01G239800 chr4A 90.984 122 8 1 4165 4283 45350627 45350506 2.090000e-35 161.0
56 TraesCS5B01G239800 chr3A 78.968 252 37 10 4043 4289 191959914 191959674 2.710000e-34 158.0
57 TraesCS5B01G239800 chr3A 91.453 117 7 1 4165 4278 575352510 575352394 2.710000e-34 158.0
58 TraesCS5B01G239800 chr3A 77.273 242 42 12 1848 2081 697370684 697370920 5.900000e-26 130.0
59 TraesCS5B01G239800 chr7D 91.026 78 5 2 4420 4497 307058372 307058297 3.580000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G239800 chr5B 419993780 420001031 7251 False 13393.0000 13393 100.000000 1 7252 1 chr5B.!!$F1 7251
1 TraesCS5B01G239800 chr5D 355197846 355206238 8392 False 1643.5000 4879 93.552833 335 7251 6 chr5D.!!$F2 6916
2 TraesCS5B01G239800 chr5A 705842240 705844083 1843 True 1397.0000 1397 80.701000 4617 6432 1 chr5A.!!$R1 1815
3 TraesCS5B01G239800 chr5A 457430159 457438395 8236 False 1207.2625 4728 93.025000 413 7226 8 chr5A.!!$F1 6813
4 TraesCS5B01G239800 chr6A 572134929 572138569 3640 False 1137.0000 1596 81.874000 2231 6256 2 chr6A.!!$F4 4025
5 TraesCS5B01G239800 chr6A 158907263 158911216 3953 False 627.5000 1068 79.378000 2231 6127 2 chr6A.!!$F3 3896
6 TraesCS5B01G239800 chr6D 427481511 427485214 3703 False 1105.5000 1555 81.502000 2231 6256 2 chr6D.!!$F2 4025
7 TraesCS5B01G239800 chr6D 120650788 120652350 1562 False 1098.0000 1098 79.675000 4553 6127 1 chr6D.!!$F1 1574
8 TraesCS5B01G239800 chr6D 48674758 48675329 571 True 339.5000 521 88.582000 3762 4290 2 chr6D.!!$R1 528
9 TraesCS5B01G239800 chr6B 643262501 643265714 3213 False 1087.0000 1520 82.530000 2309 6256 2 chr6B.!!$F1 3947
10 TraesCS5B01G239800 chr4B 665875255 665877098 1843 True 1386.0000 1386 80.593000 4617 6432 1 chr4B.!!$R2 1815
11 TraesCS5B01G239800 chr4B 625974591 625977027 2436 False 784.5500 1472 82.619500 3549 6432 2 chr4B.!!$F1 2883
12 TraesCS5B01G239800 chrUn 108321644 108323561 1917 False 1423.0000 1423 80.445000 4543 6432 1 chrUn.!!$F1 1889
13 TraesCS5B01G239800 chr2D 70375458 70376008 550 False 462.0000 462 82.892000 3758 4289 1 chr2D.!!$F1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 258 0.105964 CACTTCCACACACCCTTCGA 59.894 55.000 0.00 0.00 0.00 3.71 F
276 277 0.250901 ATAATGGGAGATGCACCGCC 60.251 55.000 0.00 0.00 0.00 6.13 F
926 935 0.388649 TTCCTCGTGCTCGCTTCTTC 60.389 55.000 2.69 0.00 36.96 2.87 F
1741 1903 0.469705 TGGGGCTGTGCTGATTTTGT 60.470 50.000 0.00 0.00 0.00 2.83 F
2093 2440 0.741326 ATCTGATCAGTGTCGTCCGG 59.259 55.000 21.92 0.00 0.00 5.14 F
3942 5057 1.064463 CCTATGGACCAACATGCCAGT 60.064 52.381 0.00 0.00 34.74 4.00 F
4318 5587 0.742281 AATACGCAGGAGCTGTGCAG 60.742 55.000 16.02 11.37 44.75 4.41 F
5177 7926 0.745845 GGTATGGAGGTGCAGCACAG 60.746 60.000 26.78 0.00 35.86 3.66 F
5927 8682 1.342574 GGAGGAGGAGAGGTAGCACTT 60.343 57.143 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1347 1460 0.971447 GAGGCCGACCCAGTTCTAGT 60.971 60.000 0.00 0.0 36.11 2.57 R
1697 1859 1.003839 TCCACGGTCCAGAATGCAC 60.004 57.895 0.00 0.0 31.97 4.57 R
2643 3254 0.599558 CGACTAACGAAGTGGGTGGA 59.400 55.000 0.00 0.0 45.00 4.02 R
3442 4484 7.445402 GCAAGATAGATTTATTTAGGTCCAGCA 59.555 37.037 0.00 0.0 0.00 4.41 R
3960 5075 0.319211 CCCACACTTTGTCGTAGCGA 60.319 55.000 0.00 0.0 0.00 4.93 R
4906 7643 1.047596 ACAGAGAGAGCGGCATCCAT 61.048 55.000 1.45 0.0 0.00 3.41 R
5906 8661 1.104577 GTGCTACCTCTCCTCCTCCG 61.105 65.000 0.00 0.0 0.00 4.63 R
6122 8880 2.442413 GCAAGGTTGTTACATGGGCTA 58.558 47.619 0.00 0.0 0.00 3.93 R
7145 9918 6.660949 GCCCTGATGCCTATGTTTCTAATATT 59.339 38.462 0.00 0.0 0.00 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.026630 TGCTTCGTCATTATCCGGATC 57.973 47.619 23.08 4.96 0.00 3.36
21 22 2.288825 TGCTTCGTCATTATCCGGATCC 60.289 50.000 23.08 0.00 0.00 3.36
22 23 2.596452 CTTCGTCATTATCCGGATCCG 58.404 52.381 27.65 27.65 39.44 4.18
37 38 2.723273 GATCCGGATCCAAACAAACCT 58.277 47.619 30.80 0.00 31.76 3.50
38 39 2.668144 TCCGGATCCAAACAAACCTT 57.332 45.000 13.41 0.00 0.00 3.50
39 40 2.952116 TCCGGATCCAAACAAACCTTT 58.048 42.857 13.41 0.00 0.00 3.11
40 41 3.301274 TCCGGATCCAAACAAACCTTTT 58.699 40.909 13.41 0.00 0.00 2.27
41 42 3.068873 TCCGGATCCAAACAAACCTTTTG 59.931 43.478 13.41 0.00 34.31 2.44
42 43 3.181470 CCGGATCCAAACAAACCTTTTGT 60.181 43.478 13.41 0.00 32.92 2.83
43 44 3.801594 CGGATCCAAACAAACCTTTTGTG 59.198 43.478 13.41 0.00 32.92 3.33
44 45 4.440802 CGGATCCAAACAAACCTTTTGTGA 60.441 41.667 13.41 0.00 32.92 3.58
45 46 5.610398 GGATCCAAACAAACCTTTTGTGAT 58.390 37.500 6.95 4.39 32.92 3.06
46 47 6.515862 CGGATCCAAACAAACCTTTTGTGATA 60.516 38.462 13.41 0.00 32.92 2.15
47 48 7.213678 GGATCCAAACAAACCTTTTGTGATAA 58.786 34.615 6.95 0.00 32.92 1.75
48 49 7.713073 GGATCCAAACAAACCTTTTGTGATAAA 59.287 33.333 6.95 0.00 32.92 1.40
49 50 7.835634 TCCAAACAAACCTTTTGTGATAAAC 57.164 32.000 5.09 0.00 32.92 2.01
50 51 7.386851 TCCAAACAAACCTTTTGTGATAAACA 58.613 30.769 5.09 0.00 36.85 2.83
51 52 7.547370 TCCAAACAAACCTTTTGTGATAAACAG 59.453 33.333 5.09 0.00 40.74 3.16
52 53 7.333174 CCAAACAAACCTTTTGTGATAAACAGT 59.667 33.333 5.09 0.00 40.74 3.55
53 54 8.716909 CAAACAAACCTTTTGTGATAAACAGTT 58.283 29.630 5.09 0.00 40.74 3.16
54 55 7.826260 ACAAACCTTTTGTGATAAACAGTTG 57.174 32.000 3.51 0.00 40.74 3.16
55 56 6.816140 ACAAACCTTTTGTGATAAACAGTTGG 59.184 34.615 3.51 0.00 40.74 3.77
56 57 5.529581 ACCTTTTGTGATAAACAGTTGGG 57.470 39.130 0.00 0.00 40.74 4.12
57 58 5.205056 ACCTTTTGTGATAAACAGTTGGGA 58.795 37.500 0.00 0.00 40.74 4.37
58 59 5.659079 ACCTTTTGTGATAAACAGTTGGGAA 59.341 36.000 0.00 0.00 40.74 3.97
59 60 6.183360 ACCTTTTGTGATAAACAGTTGGGAAG 60.183 38.462 0.00 0.00 40.74 3.46
60 61 6.183360 CCTTTTGTGATAAACAGTTGGGAAGT 60.183 38.462 0.00 0.00 40.74 3.01
61 62 6.385649 TTTGTGATAAACAGTTGGGAAGTC 57.614 37.500 0.00 0.00 40.74 3.01
62 63 5.042463 TGTGATAAACAGTTGGGAAGTCA 57.958 39.130 0.00 0.00 33.78 3.41
63 64 5.441500 TGTGATAAACAGTTGGGAAGTCAA 58.558 37.500 0.00 0.00 33.78 3.18
64 65 5.298276 TGTGATAAACAGTTGGGAAGTCAAC 59.702 40.000 0.00 0.00 45.22 3.18
69 70 2.702847 GTTGGGAAGTCAACGTGCT 58.297 52.632 0.00 0.00 37.80 4.40
70 71 1.873698 GTTGGGAAGTCAACGTGCTA 58.126 50.000 0.00 0.00 37.80 3.49
71 72 2.215196 GTTGGGAAGTCAACGTGCTAA 58.785 47.619 0.00 0.00 37.80 3.09
72 73 2.163818 TGGGAAGTCAACGTGCTAAG 57.836 50.000 0.00 0.00 0.00 2.18
73 74 1.270625 TGGGAAGTCAACGTGCTAAGG 60.271 52.381 0.00 0.00 0.00 2.69
74 75 0.796927 GGAAGTCAACGTGCTAAGGC 59.203 55.000 0.00 0.00 39.26 4.35
75 76 0.796927 GAAGTCAACGTGCTAAGGCC 59.203 55.000 0.00 0.00 37.74 5.19
76 77 0.605589 AAGTCAACGTGCTAAGGCCC 60.606 55.000 0.00 0.00 37.74 5.80
77 78 2.038837 GTCAACGTGCTAAGGCCCC 61.039 63.158 0.00 0.00 37.74 5.80
78 79 2.033448 CAACGTGCTAAGGCCCCA 59.967 61.111 0.00 0.00 37.74 4.96
79 80 1.602323 CAACGTGCTAAGGCCCCAA 60.602 57.895 0.00 0.00 37.74 4.12
80 81 1.151908 AACGTGCTAAGGCCCCAAA 59.848 52.632 0.00 0.00 37.74 3.28
81 82 0.468400 AACGTGCTAAGGCCCCAAAA 60.468 50.000 0.00 0.00 37.74 2.44
82 83 0.468400 ACGTGCTAAGGCCCCAAAAA 60.468 50.000 0.00 0.00 37.74 1.94
104 105 8.816640 AAAAACCATCACATCAGAACAATAAC 57.183 30.769 0.00 0.00 0.00 1.89
105 106 7.523293 AAACCATCACATCAGAACAATAACA 57.477 32.000 0.00 0.00 0.00 2.41
106 107 7.523293 AACCATCACATCAGAACAATAACAA 57.477 32.000 0.00 0.00 0.00 2.83
107 108 7.707624 ACCATCACATCAGAACAATAACAAT 57.292 32.000 0.00 0.00 0.00 2.71
108 109 8.125978 ACCATCACATCAGAACAATAACAATT 57.874 30.769 0.00 0.00 0.00 2.32
109 110 9.241919 ACCATCACATCAGAACAATAACAATTA 57.758 29.630 0.00 0.00 0.00 1.40
110 111 9.507280 CCATCACATCAGAACAATAACAATTAC 57.493 33.333 0.00 0.00 0.00 1.89
113 114 9.500785 TCACATCAGAACAATAACAATTACTGA 57.499 29.630 0.00 0.00 37.50 3.41
129 130 9.778741 ACAATTACTGATGAAGAAAAGTGTAGA 57.221 29.630 0.00 0.00 34.36 2.59
133 134 9.645059 TTACTGATGAAGAAAAGTGTAGATCAG 57.355 33.333 0.00 0.00 40.81 2.90
134 135 7.901029 ACTGATGAAGAAAAGTGTAGATCAGA 58.099 34.615 0.00 0.00 38.45 3.27
135 136 8.370940 ACTGATGAAGAAAAGTGTAGATCAGAA 58.629 33.333 0.00 0.00 38.45 3.02
136 137 9.381033 CTGATGAAGAAAAGTGTAGATCAGAAT 57.619 33.333 0.00 0.00 38.45 2.40
146 147 9.877178 AAAGTGTAGATCAGAATAATCGAAACT 57.123 29.630 0.00 0.00 30.36 2.66
156 157 9.731819 TCAGAATAATCGAAACTATAGACACAC 57.268 33.333 6.78 0.00 0.00 3.82
157 158 8.682895 CAGAATAATCGAAACTATAGACACACG 58.317 37.037 6.78 5.21 0.00 4.49
158 159 8.618677 AGAATAATCGAAACTATAGACACACGA 58.381 33.333 6.78 10.02 0.00 4.35
159 160 9.229784 GAATAATCGAAACTATAGACACACGAA 57.770 33.333 6.78 0.00 32.69 3.85
160 161 9.577110 AATAATCGAAACTATAGACACACGAAA 57.423 29.630 6.78 4.33 32.69 3.46
161 162 7.507672 AATCGAAACTATAGACACACGAAAG 57.492 36.000 6.78 0.00 32.69 2.62
162 163 4.855388 TCGAAACTATAGACACACGAAAGC 59.145 41.667 6.78 0.00 0.00 3.51
163 164 4.619760 CGAAACTATAGACACACGAAAGCA 59.380 41.667 6.78 0.00 0.00 3.91
164 165 5.118050 CGAAACTATAGACACACGAAAGCAA 59.882 40.000 6.78 0.00 0.00 3.91
165 166 6.346279 CGAAACTATAGACACACGAAAGCAAA 60.346 38.462 6.78 0.00 0.00 3.68
166 167 5.840940 ACTATAGACACACGAAAGCAAAC 57.159 39.130 6.78 0.00 0.00 2.93
167 168 3.788434 ATAGACACACGAAAGCAAACG 57.212 42.857 0.00 0.00 0.00 3.60
168 169 1.647346 AGACACACGAAAGCAAACGA 58.353 45.000 0.00 0.00 0.00 3.85
169 170 2.210116 AGACACACGAAAGCAAACGAT 58.790 42.857 0.00 0.00 0.00 3.73
170 171 2.032894 AGACACACGAAAGCAAACGATG 60.033 45.455 0.00 0.00 0.00 3.84
171 172 1.937223 ACACACGAAAGCAAACGATGA 59.063 42.857 0.00 0.00 0.00 2.92
172 173 2.353269 ACACACGAAAGCAAACGATGAA 59.647 40.909 0.00 0.00 0.00 2.57
173 174 2.966708 CACACGAAAGCAAACGATGAAG 59.033 45.455 0.00 0.00 0.00 3.02
174 175 2.869801 ACACGAAAGCAAACGATGAAGA 59.130 40.909 0.00 0.00 0.00 2.87
175 176 3.218398 CACGAAAGCAAACGATGAAGAC 58.782 45.455 0.00 0.00 0.00 3.01
176 177 2.223377 ACGAAAGCAAACGATGAAGACC 59.777 45.455 0.00 0.00 0.00 3.85
177 178 2.721797 CGAAAGCAAACGATGAAGACCG 60.722 50.000 0.00 0.00 0.00 4.79
178 179 1.156736 AAGCAAACGATGAAGACCGG 58.843 50.000 0.00 0.00 0.00 5.28
179 180 0.320374 AGCAAACGATGAAGACCGGA 59.680 50.000 9.46 0.00 0.00 5.14
180 181 1.066143 AGCAAACGATGAAGACCGGAT 60.066 47.619 9.46 0.00 0.00 4.18
181 182 1.327764 GCAAACGATGAAGACCGGATC 59.672 52.381 9.46 3.81 0.00 3.36
182 183 2.616960 CAAACGATGAAGACCGGATCA 58.383 47.619 9.46 10.34 0.00 2.92
183 184 3.000041 CAAACGATGAAGACCGGATCAA 59.000 45.455 9.46 0.00 0.00 2.57
184 185 2.295253 ACGATGAAGACCGGATCAAC 57.705 50.000 9.46 7.62 0.00 3.18
185 186 1.200483 CGATGAAGACCGGATCAACG 58.800 55.000 9.46 15.79 35.93 4.10
197 198 2.638480 GATCAACGGGGATCCATCAA 57.362 50.000 15.23 0.00 38.16 2.57
198 199 2.930950 GATCAACGGGGATCCATCAAA 58.069 47.619 15.23 0.00 38.16 2.69
199 200 2.418368 TCAACGGGGATCCATCAAAG 57.582 50.000 15.23 0.00 0.00 2.77
200 201 1.912731 TCAACGGGGATCCATCAAAGA 59.087 47.619 15.23 0.89 0.00 2.52
201 202 2.017049 CAACGGGGATCCATCAAAGAC 58.983 52.381 15.23 0.00 0.00 3.01
202 203 0.178068 ACGGGGATCCATCAAAGACG 59.822 55.000 15.23 6.90 0.00 4.18
203 204 0.464036 CGGGGATCCATCAAAGACGA 59.536 55.000 15.23 0.00 0.00 4.20
204 205 1.070758 CGGGGATCCATCAAAGACGAT 59.929 52.381 15.23 0.00 0.00 3.73
205 206 2.299013 CGGGGATCCATCAAAGACGATA 59.701 50.000 15.23 0.00 0.00 2.92
206 207 3.615110 CGGGGATCCATCAAAGACGATAG 60.615 52.174 15.23 0.00 46.19 2.08
207 208 3.578716 GGGGATCCATCAAAGACGATAGA 59.421 47.826 15.23 0.00 41.38 1.98
208 209 4.322349 GGGGATCCATCAAAGACGATAGAG 60.322 50.000 15.23 0.00 41.38 2.43
209 210 4.524714 GGGATCCATCAAAGACGATAGAGA 59.475 45.833 15.23 0.00 41.38 3.10
210 211 5.186797 GGGATCCATCAAAGACGATAGAGAT 59.813 44.000 15.23 0.00 41.38 2.75
211 212 6.329496 GGATCCATCAAAGACGATAGAGATC 58.671 44.000 6.95 0.00 41.38 2.75
223 224 3.930618 GATAGAGATCGTATTCCGCGAG 58.069 50.000 8.23 0.00 41.83 5.03
224 225 1.880271 AGAGATCGTATTCCGCGAGA 58.120 50.000 8.23 0.00 41.83 4.04
225 226 2.428491 AGAGATCGTATTCCGCGAGAT 58.572 47.619 8.23 3.15 41.83 2.75
226 227 2.417239 AGAGATCGTATTCCGCGAGATC 59.583 50.000 8.23 11.50 41.83 2.75
227 228 1.469308 AGATCGTATTCCGCGAGATCC 59.531 52.381 8.23 0.00 41.83 3.36
228 229 1.199327 GATCGTATTCCGCGAGATCCA 59.801 52.381 8.23 0.00 41.83 3.41
229 230 1.244816 TCGTATTCCGCGAGATCCAT 58.755 50.000 8.23 0.00 36.19 3.41
230 231 1.199327 TCGTATTCCGCGAGATCCATC 59.801 52.381 8.23 0.00 36.19 3.51
231 232 1.618861 GTATTCCGCGAGATCCATCG 58.381 55.000 8.23 0.22 45.48 3.84
232 233 0.526211 TATTCCGCGAGATCCATCGG 59.474 55.000 8.23 9.95 42.94 4.18
233 234 2.771763 ATTCCGCGAGATCCATCGGC 62.772 60.000 8.23 1.93 42.94 5.54
236 237 2.731348 GCGAGATCCATCGGCGAC 60.731 66.667 13.76 0.00 42.94 5.19
237 238 2.721859 CGAGATCCATCGGCGACA 59.278 61.111 13.76 0.00 39.04 4.35
238 239 1.658717 CGAGATCCATCGGCGACAC 60.659 63.158 13.76 1.95 39.04 3.67
239 240 1.437573 GAGATCCATCGGCGACACA 59.562 57.895 13.76 0.00 0.00 3.72
240 241 0.872021 GAGATCCATCGGCGACACAC 60.872 60.000 13.76 3.14 0.00 3.82
241 242 1.141881 GATCCATCGGCGACACACT 59.858 57.895 13.76 0.00 0.00 3.55
242 243 0.460284 GATCCATCGGCGACACACTT 60.460 55.000 13.76 0.00 0.00 3.16
243 244 0.460284 ATCCATCGGCGACACACTTC 60.460 55.000 13.76 0.00 0.00 3.01
244 245 2.100631 CCATCGGCGACACACTTCC 61.101 63.158 13.76 0.00 0.00 3.46
245 246 1.374125 CATCGGCGACACACTTCCA 60.374 57.895 13.76 0.00 0.00 3.53
246 247 1.374252 ATCGGCGACACACTTCCAC 60.374 57.895 13.76 0.00 0.00 4.02
247 248 2.094757 ATCGGCGACACACTTCCACA 62.095 55.000 13.76 0.00 0.00 4.17
248 249 2.594962 CGGCGACACACTTCCACAC 61.595 63.158 0.00 0.00 0.00 3.82
249 250 1.522806 GGCGACACACTTCCACACA 60.523 57.895 0.00 0.00 0.00 3.72
250 251 1.641677 GCGACACACTTCCACACAC 59.358 57.895 0.00 0.00 0.00 3.82
251 252 1.772063 GCGACACACTTCCACACACC 61.772 60.000 0.00 0.00 0.00 4.16
252 253 1.157870 CGACACACTTCCACACACCC 61.158 60.000 0.00 0.00 0.00 4.61
253 254 0.180406 GACACACTTCCACACACCCT 59.820 55.000 0.00 0.00 0.00 4.34
254 255 0.623723 ACACACTTCCACACACCCTT 59.376 50.000 0.00 0.00 0.00 3.95
255 256 1.308998 CACACTTCCACACACCCTTC 58.691 55.000 0.00 0.00 0.00 3.46
256 257 0.179056 ACACTTCCACACACCCTTCG 60.179 55.000 0.00 0.00 0.00 3.79
257 258 0.105964 CACTTCCACACACCCTTCGA 59.894 55.000 0.00 0.00 0.00 3.71
258 259 1.056660 ACTTCCACACACCCTTCGAT 58.943 50.000 0.00 0.00 0.00 3.59
259 260 2.028476 CACTTCCACACACCCTTCGATA 60.028 50.000 0.00 0.00 0.00 2.92
260 261 2.635915 ACTTCCACACACCCTTCGATAA 59.364 45.455 0.00 0.00 0.00 1.75
261 262 3.263425 ACTTCCACACACCCTTCGATAAT 59.737 43.478 0.00 0.00 0.00 1.28
262 263 3.260475 TCCACACACCCTTCGATAATG 57.740 47.619 0.00 0.00 0.00 1.90
263 264 2.093181 TCCACACACCCTTCGATAATGG 60.093 50.000 0.00 0.00 0.00 3.16
264 265 2.288666 CACACACCCTTCGATAATGGG 58.711 52.381 10.51 10.51 46.07 4.00
265 266 2.093181 CACACACCCTTCGATAATGGGA 60.093 50.000 16.74 0.00 43.47 4.37
266 267 2.170607 ACACACCCTTCGATAATGGGAG 59.829 50.000 16.74 12.43 43.47 4.30
267 268 2.434336 CACACCCTTCGATAATGGGAGA 59.566 50.000 16.74 0.00 43.47 3.71
268 269 3.071602 CACACCCTTCGATAATGGGAGAT 59.928 47.826 16.74 3.06 43.47 2.75
269 270 3.071602 ACACCCTTCGATAATGGGAGATG 59.928 47.826 16.74 9.35 43.47 2.90
270 271 2.039084 ACCCTTCGATAATGGGAGATGC 59.961 50.000 16.74 0.00 43.47 3.91
271 272 2.038952 CCCTTCGATAATGGGAGATGCA 59.961 50.000 7.32 0.00 43.47 3.96
272 273 3.070018 CCTTCGATAATGGGAGATGCAC 58.930 50.000 0.00 0.00 0.00 4.57
273 274 2.839486 TCGATAATGGGAGATGCACC 57.161 50.000 0.00 0.00 0.00 5.01
274 275 1.000843 TCGATAATGGGAGATGCACCG 59.999 52.381 0.00 0.00 0.00 4.94
275 276 1.160137 GATAATGGGAGATGCACCGC 58.840 55.000 0.00 0.00 0.00 5.68
276 277 0.250901 ATAATGGGAGATGCACCGCC 60.251 55.000 0.00 0.00 0.00 6.13
277 278 1.631071 TAATGGGAGATGCACCGCCA 61.631 55.000 2.18 0.00 0.00 5.69
278 279 2.497792 AATGGGAGATGCACCGCCAA 62.498 55.000 2.18 0.00 0.00 4.52
279 280 2.825836 GGGAGATGCACCGCCAAG 60.826 66.667 2.18 0.00 0.00 3.61
280 281 2.268920 GGAGATGCACCGCCAAGA 59.731 61.111 0.00 0.00 0.00 3.02
281 282 2.109126 GGAGATGCACCGCCAAGAC 61.109 63.158 0.00 0.00 0.00 3.01
282 283 1.375908 GAGATGCACCGCCAAGACA 60.376 57.895 0.00 0.00 0.00 3.41
283 284 0.745845 GAGATGCACCGCCAAGACAT 60.746 55.000 0.00 0.00 0.00 3.06
284 285 1.028330 AGATGCACCGCCAAGACATG 61.028 55.000 0.00 0.00 0.00 3.21
298 299 5.766150 CAAGACATGGACTAGGTAGAGAG 57.234 47.826 0.00 0.00 0.00 3.20
299 300 5.441500 CAAGACATGGACTAGGTAGAGAGA 58.558 45.833 0.00 0.00 0.00 3.10
300 301 5.718801 AGACATGGACTAGGTAGAGAGAA 57.281 43.478 0.00 0.00 0.00 2.87
301 302 6.080969 AGACATGGACTAGGTAGAGAGAAA 57.919 41.667 0.00 0.00 0.00 2.52
302 303 6.678547 AGACATGGACTAGGTAGAGAGAAAT 58.321 40.000 0.00 0.00 0.00 2.17
303 304 7.129425 AGACATGGACTAGGTAGAGAGAAATT 58.871 38.462 0.00 0.00 0.00 1.82
304 305 7.621683 AGACATGGACTAGGTAGAGAGAAATTT 59.378 37.037 0.00 0.00 0.00 1.82
305 306 8.840200 ACATGGACTAGGTAGAGAGAAATTTA 57.160 34.615 0.00 0.00 0.00 1.40
306 307 9.440761 ACATGGACTAGGTAGAGAGAAATTTAT 57.559 33.333 0.00 0.00 0.00 1.40
309 310 8.925338 TGGACTAGGTAGAGAGAAATTTATTCC 58.075 37.037 0.00 0.00 0.00 3.01
310 311 8.925338 GGACTAGGTAGAGAGAAATTTATTCCA 58.075 37.037 0.00 0.00 0.00 3.53
329 330 9.706691 TTATTCCATCTTTAGATAATCGTCACC 57.293 33.333 0.00 0.00 32.63 4.02
330 331 5.769367 TCCATCTTTAGATAATCGTCACCG 58.231 41.667 0.00 0.00 32.63 4.94
331 332 4.386049 CCATCTTTAGATAATCGTCACCGC 59.614 45.833 0.00 0.00 32.63 5.68
332 333 3.973657 TCTTTAGATAATCGTCACCGCC 58.026 45.455 0.00 0.00 0.00 6.13
333 334 3.635373 TCTTTAGATAATCGTCACCGCCT 59.365 43.478 0.00 0.00 0.00 5.52
334 335 4.098960 TCTTTAGATAATCGTCACCGCCTT 59.901 41.667 0.00 0.00 0.00 4.35
335 336 5.300034 TCTTTAGATAATCGTCACCGCCTTA 59.700 40.000 0.00 0.00 0.00 2.69
336 337 5.717078 TTAGATAATCGTCACCGCCTTAT 57.283 39.130 0.00 0.00 0.00 1.73
337 338 4.175787 AGATAATCGTCACCGCCTTATC 57.824 45.455 0.00 0.00 37.96 1.75
338 339 3.572682 AGATAATCGTCACCGCCTTATCA 59.427 43.478 14.09 0.00 38.94 2.15
339 340 2.684001 AATCGTCACCGCCTTATCAA 57.316 45.000 0.00 0.00 0.00 2.57
340 341 1.935933 ATCGTCACCGCCTTATCAAC 58.064 50.000 0.00 0.00 0.00 3.18
341 342 0.604073 TCGTCACCGCCTTATCAACA 59.396 50.000 0.00 0.00 0.00 3.33
342 343 0.719465 CGTCACCGCCTTATCAACAC 59.281 55.000 0.00 0.00 0.00 3.32
343 344 1.671850 CGTCACCGCCTTATCAACACT 60.672 52.381 0.00 0.00 0.00 3.55
374 375 1.170290 AAAAACGAAGCCTCCCACCG 61.170 55.000 0.00 0.00 0.00 4.94
383 384 1.255667 GCCTCCCACCGACTAGTCAA 61.256 60.000 22.37 0.14 0.00 3.18
386 387 0.606604 TCCCACCGACTAGTCAAAGC 59.393 55.000 22.37 0.00 0.00 3.51
409 410 2.852449 TGATAAGGTGGGAATCTGGCTT 59.148 45.455 0.00 0.00 0.00 4.35
459 462 5.485353 TGCTTTTTCTCTCTCCTCCTTCATA 59.515 40.000 0.00 0.00 0.00 2.15
460 463 6.048509 GCTTTTTCTCTCTCCTCCTTCATAG 58.951 44.000 0.00 0.00 0.00 2.23
535 538 3.554960 CGACACATCCAAGAGAGAACCAA 60.555 47.826 0.00 0.00 0.00 3.67
539 542 1.734655 TCCAAGAGAGAACCAAGGCT 58.265 50.000 0.00 0.00 0.00 4.58
562 565 0.537188 GCCCGTCTTCCATTCTCTCA 59.463 55.000 0.00 0.00 0.00 3.27
574 577 3.507622 CCATTCTCTCACCAAGAAAACCC 59.492 47.826 0.00 0.00 36.41 4.11
598 601 1.014044 AACGTCCGTGTGCATAGCAG 61.014 55.000 0.00 0.00 40.08 4.24
608 611 2.898840 CATAGCAGGCCGCACCAG 60.899 66.667 19.30 5.08 46.13 4.00
717 721 4.671590 TCCCACTCTCCGTCGCCA 62.672 66.667 0.00 0.00 0.00 5.69
752 756 2.042537 TCCTCATCTGCCTCCGCT 60.043 61.111 0.00 0.00 35.36 5.52
808 812 3.382832 CCGTTGCGGTCTCCTCCT 61.383 66.667 0.00 0.00 42.73 3.69
809 813 2.125912 CGTTGCGGTCTCCTCCTG 60.126 66.667 0.00 0.00 0.00 3.86
838 847 2.281484 TTCCTCGTGTGCTTGCCC 60.281 61.111 0.00 0.00 0.00 5.36
845 854 4.704833 TGTGCTTGCCCGCTCCTC 62.705 66.667 0.00 0.00 0.00 3.71
859 868 4.124351 CCTCCGCTGTCGCCGTTA 62.124 66.667 0.00 0.00 0.00 3.18
860 869 2.104331 CTCCGCTGTCGCCGTTAT 59.896 61.111 0.00 0.00 0.00 1.89
861 870 1.944676 CTCCGCTGTCGCCGTTATC 60.945 63.158 0.00 0.00 0.00 1.75
862 871 3.320078 CCGCTGTCGCCGTTATCG 61.320 66.667 0.00 0.00 0.00 2.92
863 872 2.578713 CGCTGTCGCCGTTATCGT 60.579 61.111 0.00 0.00 35.01 3.73
864 873 2.565394 CGCTGTCGCCGTTATCGTC 61.565 63.158 0.00 0.00 35.01 4.20
901 910 4.154347 CAGCTCCACCTCCGCCTC 62.154 72.222 0.00 0.00 0.00 4.70
909 918 4.214327 CCTCCGCCTCCGCTCTTC 62.214 72.222 0.00 0.00 0.00 2.87
910 919 4.214327 CTCCGCCTCCGCTCTTCC 62.214 72.222 0.00 0.00 0.00 3.46
911 920 4.761058 TCCGCCTCCGCTCTTCCT 62.761 66.667 0.00 0.00 0.00 3.36
912 921 4.214327 CCGCCTCCGCTCTTCCTC 62.214 72.222 0.00 0.00 0.00 3.71
913 922 4.560856 CGCCTCCGCTCTTCCTCG 62.561 72.222 0.00 0.00 0.00 4.63
914 923 3.453679 GCCTCCGCTCTTCCTCGT 61.454 66.667 0.00 0.00 0.00 4.18
915 924 2.492090 CCTCCGCTCTTCCTCGTG 59.508 66.667 0.00 0.00 0.00 4.35
916 925 2.202676 CTCCGCTCTTCCTCGTGC 60.203 66.667 0.00 0.00 0.00 5.34
917 926 2.676822 TCCGCTCTTCCTCGTGCT 60.677 61.111 0.00 0.00 0.00 4.40
918 927 2.202676 CCGCTCTTCCTCGTGCTC 60.203 66.667 0.00 0.00 0.00 4.26
919 928 2.578178 CGCTCTTCCTCGTGCTCG 60.578 66.667 0.81 0.81 38.55 5.03
920 929 2.883253 GCTCTTCCTCGTGCTCGC 60.883 66.667 2.69 0.00 36.96 5.03
921 930 2.881389 CTCTTCCTCGTGCTCGCT 59.119 61.111 2.69 0.00 36.96 4.93
924 933 1.214062 CTTCCTCGTGCTCGCTTCT 59.786 57.895 2.69 0.00 36.96 2.85
926 935 0.388649 TTCCTCGTGCTCGCTTCTTC 60.389 55.000 2.69 0.00 36.96 2.87
933 942 2.363172 GCTCGCTTCTTCCTCCCCT 61.363 63.158 0.00 0.00 0.00 4.79
1019 1080 2.840651 CAATGGTGGTAGGTTCTCCTCT 59.159 50.000 0.00 0.00 43.94 3.69
1035 1096 1.135333 CCTCTCCTTCCTCTGTTACGC 59.865 57.143 0.00 0.00 0.00 4.42
1038 1099 0.609957 TCCTTCCTCTGTTACGCCGA 60.610 55.000 0.00 0.00 0.00 5.54
1095 1157 9.674824 GATTGAGAAATGGAATGCTTAGTAATG 57.325 33.333 0.00 0.00 0.00 1.90
1104 1166 8.574251 TGGAATGCTTAGTAATGTTTATGTGT 57.426 30.769 0.00 0.00 0.00 3.72
1112 1174 5.879237 AGTAATGTTTATGTGTGGATTGCG 58.121 37.500 0.00 0.00 0.00 4.85
1120 1182 6.691754 TTATGTGTGGATTGCGTTTCATAT 57.308 33.333 0.00 0.00 0.00 1.78
1128 1190 7.281999 TGTGGATTGCGTTTCATATGATTTCTA 59.718 33.333 6.17 0.00 0.00 2.10
1129 1191 7.587757 GTGGATTGCGTTTCATATGATTTCTAC 59.412 37.037 6.17 1.61 0.00 2.59
1130 1192 7.498900 TGGATTGCGTTTCATATGATTTCTACT 59.501 33.333 6.17 0.00 0.00 2.57
1131 1193 8.988934 GGATTGCGTTTCATATGATTTCTACTA 58.011 33.333 6.17 0.00 0.00 1.82
1147 1209 9.590828 GATTTCTACTATACCTAGGACTCCTTT 57.409 37.037 17.98 0.00 34.61 3.11
1158 1220 2.567615 AGGACTCCTTTCGCACTACATT 59.432 45.455 0.00 0.00 0.00 2.71
1192 1254 1.866925 CGAAACACTCGGAAAGGGC 59.133 57.895 0.00 0.00 44.20 5.19
1284 1374 1.897398 GACGATTTGGTTCGCACGCT 61.897 55.000 0.00 0.00 42.82 5.07
1288 1378 0.602638 ATTTGGTTCGCACGCTGAGA 60.603 50.000 0.00 0.00 0.00 3.27
1291 1381 0.602638 TGGTTCGCACGCTGAGATTT 60.603 50.000 0.00 0.00 0.00 2.17
1293 1383 1.595609 GTTCGCACGCTGAGATTTTG 58.404 50.000 0.00 0.00 0.00 2.44
1294 1384 0.516877 TTCGCACGCTGAGATTTTGG 59.483 50.000 0.00 0.00 0.00 3.28
1319 1409 7.241376 GTGGTTTCTTCGATCGAAAAATATGT 58.759 34.615 28.79 0.00 32.71 2.29
1320 1410 7.749126 GTGGTTTCTTCGATCGAAAAATATGTT 59.251 33.333 28.79 0.00 32.71 2.71
1324 1414 5.526111 TCTTCGATCGAAAAATATGTTCCCC 59.474 40.000 28.79 0.00 33.34 4.81
1325 1415 4.131596 TCGATCGAAAAATATGTTCCCCC 58.868 43.478 16.99 0.00 0.00 5.40
1347 1460 2.207229 CCTCGGTGTGTCCCAGACA 61.207 63.158 0.00 0.00 40.50 3.41
1422 1535 4.191544 GGATTTCATGTTCCATCGTCTCA 58.808 43.478 0.00 0.00 31.99 3.27
1544 1657 7.970061 TCTGCTGCAATACTTTGTCAAAATATC 59.030 33.333 3.02 0.00 35.17 1.63
1676 1838 8.884124 TCTTTTCTTTATGGTCCATTCAATCT 57.116 30.769 10.33 0.00 0.00 2.40
1677 1839 9.973661 TCTTTTCTTTATGGTCCATTCAATCTA 57.026 29.630 10.33 0.00 0.00 1.98
1741 1903 0.469705 TGGGGCTGTGCTGATTTTGT 60.470 50.000 0.00 0.00 0.00 2.83
1747 1909 2.666619 GCTGTGCTGATTTTGTCTTCGG 60.667 50.000 0.00 0.00 0.00 4.30
1768 1930 4.672542 CGGTTTCAATCGTGCATGATCTTT 60.673 41.667 21.44 4.64 0.00 2.52
1896 2243 8.760980 CCCATATGGTCCAAAATTCTTACTAA 57.239 34.615 20.46 0.00 0.00 2.24
1957 2304 7.354025 TCGATCGCAAAGTATCTTTGTTTAA 57.646 32.000 11.09 7.06 0.00 1.52
2052 2399 5.823861 AATGGGCAAACCTGTTTAATCTT 57.176 34.783 0.00 0.00 41.11 2.40
2092 2439 2.188524 CAATCTGATCAGTGTCGTCCG 58.811 52.381 21.92 0.00 0.00 4.79
2093 2440 0.741326 ATCTGATCAGTGTCGTCCGG 59.259 55.000 21.92 0.00 0.00 5.14
2112 2459 3.815401 CCGGTAAATGCCCTCTTATTCAG 59.185 47.826 0.00 0.00 0.00 3.02
2145 2492 7.978925 TCTAGTTCCCAGAGAAATTTTCTTCT 58.021 34.615 12.73 8.66 40.87 2.85
2237 2842 2.191128 ACTCTTCTGGCGCTGATTTT 57.809 45.000 7.64 0.00 0.00 1.82
2306 2914 7.489113 GGCACAGTAAAATTCCTCAATTGTATG 59.511 37.037 5.13 0.00 32.18 2.39
2339 2947 9.190858 CTCTCTATAATTGCTTTGCTAGTAGTG 57.809 37.037 0.00 0.00 0.00 2.74
2643 3254 3.249189 TGGGCCAACGAGGAAGCT 61.249 61.111 2.13 0.00 41.22 3.74
2730 3341 7.756614 AGGGAATTAAGGAGATTGGTAATACC 58.243 38.462 1.71 1.71 39.22 2.73
2844 3462 2.724977 TGCTGGAACTACTTCTCACG 57.275 50.000 0.00 0.00 0.00 4.35
3555 4623 7.817418 TGGAAACTTAGCTTGACTTAAATGT 57.183 32.000 0.00 0.00 0.00 2.71
3698 4804 4.221041 ACCTACCTGTTAGAGCTGAGAAAC 59.779 45.833 0.00 0.00 0.00 2.78
3816 4929 6.813152 CCACTTATTTTGCCACTAGGAATTTG 59.187 38.462 0.00 0.00 36.89 2.32
3869 4982 2.561858 TGCATGCTCAAAAATGCCACTA 59.438 40.909 20.33 0.00 46.95 2.74
3872 4985 4.441079 GCATGCTCAAAAATGCCACTAGAT 60.441 41.667 11.37 0.00 42.73 1.98
3927 5042 8.677300 GCCATGTTATAATGACCAATACCTATG 58.323 37.037 0.00 0.00 0.00 2.23
3938 5053 3.569701 CCAATACCTATGGACCAACATGC 59.430 47.826 0.00 0.00 40.56 4.06
3942 5057 1.064463 CCTATGGACCAACATGCCAGT 60.064 52.381 0.00 0.00 34.74 4.00
3958 5073 3.238597 GCCAGTTCTCCCTCTATCTCAT 58.761 50.000 0.00 0.00 0.00 2.90
3959 5074 3.258123 GCCAGTTCTCCCTCTATCTCATC 59.742 52.174 0.00 0.00 0.00 2.92
3960 5075 4.739793 CCAGTTCTCCCTCTATCTCATCT 58.260 47.826 0.00 0.00 0.00 2.90
3962 5077 4.455533 CAGTTCTCCCTCTATCTCATCTCG 59.544 50.000 0.00 0.00 0.00 4.04
3963 5078 3.066291 TCTCCCTCTATCTCATCTCGC 57.934 52.381 0.00 0.00 0.00 5.03
3965 5080 3.841255 TCTCCCTCTATCTCATCTCGCTA 59.159 47.826 0.00 0.00 0.00 4.26
3966 5081 3.938963 CTCCCTCTATCTCATCTCGCTAC 59.061 52.174 0.00 0.00 0.00 3.58
3967 5082 2.675844 CCCTCTATCTCATCTCGCTACG 59.324 54.545 0.00 0.00 0.00 3.51
3968 5083 3.591023 CCTCTATCTCATCTCGCTACGA 58.409 50.000 0.00 0.00 0.00 3.43
3969 5084 3.369756 CCTCTATCTCATCTCGCTACGAC 59.630 52.174 0.00 0.00 0.00 4.34
4010 5125 4.394920 TGATCCCAACAGCGTTCTTATTTC 59.605 41.667 0.00 0.00 0.00 2.17
4050 5165 1.348036 GCTTACTCCTGACAAGTGGGT 59.652 52.381 0.00 0.00 0.00 4.51
4080 5195 9.194972 ACACTTATCATTGTGAGATAGAGAGAA 57.805 33.333 0.00 0.00 37.59 2.87
4081 5196 9.681692 CACTTATCATTGTGAGATAGAGAGAAG 57.318 37.037 0.00 0.00 36.38 2.85
4082 5197 9.639563 ACTTATCATTGTGAGATAGAGAGAAGA 57.360 33.333 0.00 0.00 30.32 2.87
4084 5199 9.859152 TTATCATTGTGAGATAGAGAGAAGAGA 57.141 33.333 0.00 0.00 30.32 3.10
4085 5200 8.765488 ATCATTGTGAGATAGAGAGAAGAGAA 57.235 34.615 0.00 0.00 0.00 2.87
4096 5211 5.076182 AGAGAGAAGAGAACTGACATGTGA 58.924 41.667 1.15 0.00 0.00 3.58
4099 5214 5.048083 AGAGAAGAGAACTGACATGTGAGTC 60.048 44.000 18.61 11.70 38.99 3.36
4102 5217 5.637006 AGAGAACTGACATGTGAGTCTAC 57.363 43.478 18.61 12.53 39.27 2.59
4119 5236 7.709613 GTGAGTCTACGGGTATTTTTGTCATAT 59.290 37.037 0.00 0.00 0.00 1.78
4120 5237 8.916062 TGAGTCTACGGGTATTTTTGTCATATA 58.084 33.333 0.00 0.00 0.00 0.86
4133 5250 9.859427 ATTTTTGTCATATAACATGGTCAACAG 57.141 29.630 0.00 0.00 0.00 3.16
4160 5277 5.432645 TGACACTTTGACCTGACAATAACA 58.567 37.500 0.00 0.00 0.00 2.41
4191 5440 4.334552 TGGCATTTCTGAGCAAACATCTA 58.665 39.130 0.00 0.00 0.00 1.98
4193 5442 5.419788 TGGCATTTCTGAGCAAACATCTAAT 59.580 36.000 0.00 0.00 0.00 1.73
4195 5444 6.405065 GGCATTTCTGAGCAAACATCTAATGA 60.405 38.462 0.00 0.00 0.00 2.57
4232 5481 8.519492 TTTTGAGCAGTTGTAATTTCTAATGC 57.481 30.769 10.01 10.01 35.31 3.56
4279 5531 7.251321 AGTGGCATAAATGATAAAAACCCAA 57.749 32.000 0.00 0.00 0.00 4.12
4318 5587 0.742281 AATACGCAGGAGCTGTGCAG 60.742 55.000 16.02 11.37 44.75 4.41
4366 7087 5.301805 CACCAGAGAATAACAAGTTGGGTTT 59.698 40.000 7.96 0.00 0.00 3.27
4368 7089 5.048013 CCAGAGAATAACAAGTTGGGTTTCC 60.048 44.000 7.96 2.31 0.00 3.13
4434 7161 9.444600 GTTTCTTGGGTGACTTGTTAGATATTA 57.555 33.333 0.00 0.00 0.00 0.98
4451 7178 7.618019 AGATATTATGGAGGTTTAGTGAGCA 57.382 36.000 0.00 0.00 0.00 4.26
4465 7192 4.942761 AGTGAGCACCATGTCAAATTTT 57.057 36.364 0.00 0.00 0.00 1.82
4471 7198 6.040278 TGAGCACCATGTCAAATTTTTCTACA 59.960 34.615 0.00 0.00 0.00 2.74
4474 7201 7.933033 AGCACCATGTCAAATTTTTCTACAATT 59.067 29.630 0.00 0.00 0.00 2.32
4653 7383 1.885887 TGGTCACTTAGTTGGCATTGC 59.114 47.619 0.00 0.00 0.00 3.56
4662 7392 1.150827 GTTGGCATTGCAAAGGAAGC 58.849 50.000 11.39 2.91 0.00 3.86
4778 7513 3.132289 TCCTTAGTAGACATGGGCTTTCG 59.868 47.826 0.00 0.00 0.00 3.46
5087 7824 8.024285 GGACGTTGGAATTTGTGTATAATTTGA 58.976 33.333 0.00 0.00 0.00 2.69
5177 7926 0.745845 GGTATGGAGGTGCAGCACAG 60.746 60.000 26.78 0.00 35.86 3.66
5483 8238 3.303938 CAGATTTCCTCTCCTGCCTCTA 58.696 50.000 0.00 0.00 29.16 2.43
5906 8661 8.839310 ATGTGCTATCTTTATTCACTGGTATC 57.161 34.615 0.00 0.00 0.00 2.24
5927 8682 1.342574 GGAGGAGGAGAGGTAGCACTT 60.343 57.143 0.00 0.00 0.00 3.16
6122 8880 0.856982 TTGACTTGGTGATTGGGGGT 59.143 50.000 0.00 0.00 0.00 4.95
6328 9094 8.853345 CACAACTTCATCTATGTTAAACATTGC 58.147 33.333 0.00 0.00 39.88 3.56
6380 9148 8.082334 AGAAAGATCGCATTATTCTTTAGCTC 57.918 34.615 0.00 0.00 39.22 4.09
6615 9385 4.606210 TGCCCACTAGACAAGTAGACATA 58.394 43.478 0.00 0.00 35.76 2.29
6661 9431 1.902938 TCGTGAATGGGTTTGCATCA 58.097 45.000 0.00 0.00 0.00 3.07
6789 9559 1.537202 GAGTGTGTTGCCTGGATCAAC 59.463 52.381 0.00 3.95 42.91 3.18
6790 9560 1.143684 AGTGTGTTGCCTGGATCAACT 59.856 47.619 15.25 1.39 43.00 3.16
7067 9839 4.456911 TCACATTGCAGAGAAATGAGTTCC 59.543 41.667 4.77 0.00 38.21 3.62
7145 9918 6.889722 AGTGGCCAGATAAAGCATTAAACTAA 59.110 34.615 5.11 0.00 0.00 2.24
7182 9955 4.113815 CAGGGCGATGGGGCTTCA 62.114 66.667 0.00 0.00 41.87 3.02
7206 9979 9.823647 TCAGGATGTCTAGTCATTTTTCTTATC 57.176 33.333 3.93 0.00 37.40 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.338500 GGATCCGGATAATGACGAAGC 58.662 52.381 19.15 0.00 0.00 3.86
2 3 2.596452 CGGATCCGGATAATGACGAAG 58.404 52.381 26.95 0.00 35.56 3.79
3 4 2.717580 CGGATCCGGATAATGACGAA 57.282 50.000 26.95 0.00 35.56 3.85
17 18 2.723273 AGGTTTGTTTGGATCCGGATC 58.277 47.619 32.57 32.57 37.11 3.36
18 19 2.899303 AGGTTTGTTTGGATCCGGAT 57.101 45.000 19.21 19.21 0.00 4.18
19 20 2.668144 AAGGTTTGTTTGGATCCGGA 57.332 45.000 6.61 6.61 0.00 5.14
20 21 3.181470 ACAAAAGGTTTGTTTGGATCCGG 60.181 43.478 7.39 0.00 39.74 5.14
21 22 3.801594 CACAAAAGGTTTGTTTGGATCCG 59.198 43.478 7.39 0.00 39.74 4.18
22 23 5.017294 TCACAAAAGGTTTGTTTGGATCC 57.983 39.130 4.20 4.20 39.74 3.36
23 24 8.547894 GTTTATCACAAAAGGTTTGTTTGGATC 58.452 33.333 3.66 0.00 39.74 3.36
24 25 8.043710 TGTTTATCACAAAAGGTTTGTTTGGAT 58.956 29.630 3.66 6.92 39.74 3.41
25 26 7.386851 TGTTTATCACAAAAGGTTTGTTTGGA 58.613 30.769 3.66 0.19 39.74 3.53
26 27 7.333174 ACTGTTTATCACAAAAGGTTTGTTTGG 59.667 33.333 3.66 0.00 39.74 3.28
27 28 8.250538 ACTGTTTATCACAAAAGGTTTGTTTG 57.749 30.769 3.66 0.00 40.95 2.93
28 29 8.716909 CAACTGTTTATCACAAAAGGTTTGTTT 58.283 29.630 3.66 0.00 33.87 2.83
29 30 7.333174 CCAACTGTTTATCACAAAAGGTTTGTT 59.667 33.333 3.66 0.00 33.87 2.83
30 31 6.816140 CCAACTGTTTATCACAAAAGGTTTGT 59.184 34.615 0.54 0.54 33.87 2.83
31 32 6.257630 CCCAACTGTTTATCACAAAAGGTTTG 59.742 38.462 0.00 0.00 33.87 2.93
32 33 6.155393 TCCCAACTGTTTATCACAAAAGGTTT 59.845 34.615 0.00 0.00 33.87 3.27
33 34 5.659079 TCCCAACTGTTTATCACAAAAGGTT 59.341 36.000 0.00 0.00 33.87 3.50
34 35 5.205056 TCCCAACTGTTTATCACAAAAGGT 58.795 37.500 0.00 0.00 33.87 3.50
35 36 5.782893 TCCCAACTGTTTATCACAAAAGG 57.217 39.130 0.00 0.00 33.87 3.11
36 37 6.805713 ACTTCCCAACTGTTTATCACAAAAG 58.194 36.000 0.00 0.00 33.87 2.27
37 38 6.378564 TGACTTCCCAACTGTTTATCACAAAA 59.621 34.615 0.00 0.00 33.87 2.44
38 39 5.888724 TGACTTCCCAACTGTTTATCACAAA 59.111 36.000 0.00 0.00 33.87 2.83
39 40 5.441500 TGACTTCCCAACTGTTTATCACAA 58.558 37.500 0.00 0.00 33.87 3.33
40 41 5.042463 TGACTTCCCAACTGTTTATCACA 57.958 39.130 0.00 0.00 0.00 3.58
41 42 5.560183 CGTTGACTTCCCAACTGTTTATCAC 60.560 44.000 0.00 0.00 43.02 3.06
42 43 4.513692 CGTTGACTTCCCAACTGTTTATCA 59.486 41.667 0.00 0.00 43.02 2.15
43 44 4.514066 ACGTTGACTTCCCAACTGTTTATC 59.486 41.667 0.00 0.00 43.02 1.75
44 45 4.274950 CACGTTGACTTCCCAACTGTTTAT 59.725 41.667 0.00 0.00 43.02 1.40
45 46 3.623960 CACGTTGACTTCCCAACTGTTTA 59.376 43.478 0.00 0.00 43.02 2.01
46 47 2.422127 CACGTTGACTTCCCAACTGTTT 59.578 45.455 0.00 0.00 43.02 2.83
47 48 2.014128 CACGTTGACTTCCCAACTGTT 58.986 47.619 0.00 0.00 43.02 3.16
48 49 1.663695 CACGTTGACTTCCCAACTGT 58.336 50.000 0.00 0.00 43.02 3.55
49 50 0.307760 GCACGTTGACTTCCCAACTG 59.692 55.000 0.00 0.00 43.02 3.16
50 51 0.180406 AGCACGTTGACTTCCCAACT 59.820 50.000 0.00 0.00 43.02 3.16
51 52 1.873698 TAGCACGTTGACTTCCCAAC 58.126 50.000 0.00 0.00 42.09 3.77
52 53 2.489971 CTTAGCACGTTGACTTCCCAA 58.510 47.619 0.00 0.00 0.00 4.12
53 54 1.270625 CCTTAGCACGTTGACTTCCCA 60.271 52.381 0.00 0.00 0.00 4.37
54 55 1.439679 CCTTAGCACGTTGACTTCCC 58.560 55.000 0.00 0.00 0.00 3.97
55 56 0.796927 GCCTTAGCACGTTGACTTCC 59.203 55.000 0.00 0.00 39.53 3.46
56 57 0.796927 GGCCTTAGCACGTTGACTTC 59.203 55.000 0.00 0.00 42.56 3.01
57 58 0.605589 GGGCCTTAGCACGTTGACTT 60.606 55.000 0.84 0.00 42.56 3.01
58 59 1.003718 GGGCCTTAGCACGTTGACT 60.004 57.895 0.84 0.00 42.56 3.41
59 60 2.038837 GGGGCCTTAGCACGTTGAC 61.039 63.158 0.84 0.00 46.55 3.18
60 61 2.058125 TTGGGGCCTTAGCACGTTGA 62.058 55.000 0.84 0.00 46.55 3.18
61 62 1.175983 TTTGGGGCCTTAGCACGTTG 61.176 55.000 0.84 0.00 46.55 4.10
62 63 0.468400 TTTTGGGGCCTTAGCACGTT 60.468 50.000 0.84 0.00 46.55 3.99
63 64 0.468400 TTTTTGGGGCCTTAGCACGT 60.468 50.000 0.84 0.00 46.55 4.49
64 65 2.346597 TTTTTGGGGCCTTAGCACG 58.653 52.632 0.84 0.00 46.55 5.34
79 80 8.420222 TGTTATTGTTCTGATGTGATGGTTTTT 58.580 29.630 0.00 0.00 0.00 1.94
80 81 7.950512 TGTTATTGTTCTGATGTGATGGTTTT 58.049 30.769 0.00 0.00 0.00 2.43
81 82 7.523293 TGTTATTGTTCTGATGTGATGGTTT 57.477 32.000 0.00 0.00 0.00 3.27
82 83 7.523293 TTGTTATTGTTCTGATGTGATGGTT 57.477 32.000 0.00 0.00 0.00 3.67
83 84 7.707624 ATTGTTATTGTTCTGATGTGATGGT 57.292 32.000 0.00 0.00 0.00 3.55
84 85 9.507280 GTAATTGTTATTGTTCTGATGTGATGG 57.493 33.333 0.00 0.00 0.00 3.51
87 88 9.500785 TCAGTAATTGTTATTGTTCTGATGTGA 57.499 29.630 0.00 0.00 30.34 3.58
103 104 9.778741 TCTACACTTTTCTTCATCAGTAATTGT 57.221 29.630 0.00 0.00 0.00 2.71
107 108 9.645059 CTGATCTACACTTTTCTTCATCAGTAA 57.355 33.333 0.00 0.00 34.02 2.24
108 109 9.025041 TCTGATCTACACTTTTCTTCATCAGTA 57.975 33.333 0.00 0.00 38.02 2.74
109 110 7.901029 TCTGATCTACACTTTTCTTCATCAGT 58.099 34.615 0.00 0.00 38.02 3.41
110 111 8.768957 TTCTGATCTACACTTTTCTTCATCAG 57.231 34.615 0.00 0.00 38.13 2.90
120 121 9.877178 AGTTTCGATTATTCTGATCTACACTTT 57.123 29.630 0.00 0.00 0.00 2.66
130 131 9.731819 GTGTGTCTATAGTTTCGATTATTCTGA 57.268 33.333 0.00 0.00 0.00 3.27
131 132 8.682895 CGTGTGTCTATAGTTTCGATTATTCTG 58.317 37.037 0.00 0.00 0.00 3.02
132 133 8.618677 TCGTGTGTCTATAGTTTCGATTATTCT 58.381 33.333 0.00 0.00 0.00 2.40
133 134 8.778141 TCGTGTGTCTATAGTTTCGATTATTC 57.222 34.615 0.00 0.00 0.00 1.75
134 135 9.577110 TTTCGTGTGTCTATAGTTTCGATTATT 57.423 29.630 0.00 0.00 0.00 1.40
135 136 9.234384 CTTTCGTGTGTCTATAGTTTCGATTAT 57.766 33.333 0.00 0.00 0.00 1.28
136 137 7.219535 GCTTTCGTGTGTCTATAGTTTCGATTA 59.780 37.037 0.00 0.00 0.00 1.75
137 138 6.034683 GCTTTCGTGTGTCTATAGTTTCGATT 59.965 38.462 0.00 0.00 0.00 3.34
138 139 5.515626 GCTTTCGTGTGTCTATAGTTTCGAT 59.484 40.000 0.00 0.00 0.00 3.59
139 140 4.855388 GCTTTCGTGTGTCTATAGTTTCGA 59.145 41.667 0.00 2.62 0.00 3.71
140 141 4.619760 TGCTTTCGTGTGTCTATAGTTTCG 59.380 41.667 0.00 0.42 0.00 3.46
141 142 6.462073 TTGCTTTCGTGTGTCTATAGTTTC 57.538 37.500 0.00 0.00 0.00 2.78
142 143 6.563381 CGTTTGCTTTCGTGTGTCTATAGTTT 60.563 38.462 0.00 0.00 0.00 2.66
143 144 5.107607 CGTTTGCTTTCGTGTGTCTATAGTT 60.108 40.000 0.00 0.00 0.00 2.24
144 145 4.384846 CGTTTGCTTTCGTGTGTCTATAGT 59.615 41.667 0.00 0.00 0.00 2.12
145 146 4.619760 TCGTTTGCTTTCGTGTGTCTATAG 59.380 41.667 0.00 0.00 0.00 1.31
146 147 4.548494 TCGTTTGCTTTCGTGTGTCTATA 58.452 39.130 0.00 0.00 0.00 1.31
147 148 3.386486 TCGTTTGCTTTCGTGTGTCTAT 58.614 40.909 0.00 0.00 0.00 1.98
148 149 2.811855 TCGTTTGCTTTCGTGTGTCTA 58.188 42.857 0.00 0.00 0.00 2.59
149 150 1.647346 TCGTTTGCTTTCGTGTGTCT 58.353 45.000 0.00 0.00 0.00 3.41
150 151 2.033236 TCATCGTTTGCTTTCGTGTGTC 60.033 45.455 0.00 0.00 0.00 3.67
151 152 1.937223 TCATCGTTTGCTTTCGTGTGT 59.063 42.857 0.00 0.00 0.00 3.72
152 153 2.661504 TCATCGTTTGCTTTCGTGTG 57.338 45.000 0.00 0.00 0.00 3.82
153 154 2.869801 TCTTCATCGTTTGCTTTCGTGT 59.130 40.909 0.00 0.00 0.00 4.49
154 155 3.218398 GTCTTCATCGTTTGCTTTCGTG 58.782 45.455 0.00 0.00 0.00 4.35
155 156 2.223377 GGTCTTCATCGTTTGCTTTCGT 59.777 45.455 0.00 0.00 0.00 3.85
156 157 2.721797 CGGTCTTCATCGTTTGCTTTCG 60.722 50.000 0.00 0.00 0.00 3.46
157 158 2.412847 CCGGTCTTCATCGTTTGCTTTC 60.413 50.000 0.00 0.00 0.00 2.62
158 159 1.535462 CCGGTCTTCATCGTTTGCTTT 59.465 47.619 0.00 0.00 0.00 3.51
159 160 1.156736 CCGGTCTTCATCGTTTGCTT 58.843 50.000 0.00 0.00 0.00 3.91
160 161 0.320374 TCCGGTCTTCATCGTTTGCT 59.680 50.000 0.00 0.00 0.00 3.91
161 162 1.327764 GATCCGGTCTTCATCGTTTGC 59.672 52.381 0.00 0.00 0.00 3.68
162 163 2.616960 TGATCCGGTCTTCATCGTTTG 58.383 47.619 0.00 0.00 0.00 2.93
163 164 3.000727 GTTGATCCGGTCTTCATCGTTT 58.999 45.455 0.00 0.00 0.00 3.60
164 165 2.618053 GTTGATCCGGTCTTCATCGTT 58.382 47.619 0.00 0.00 0.00 3.85
165 166 1.469251 CGTTGATCCGGTCTTCATCGT 60.469 52.381 18.45 0.00 32.92 3.73
166 167 1.200483 CGTTGATCCGGTCTTCATCG 58.800 55.000 0.00 10.54 0.00 3.84
167 168 1.571919 CCGTTGATCCGGTCTTCATC 58.428 55.000 0.00 0.00 43.07 2.92
168 169 0.178068 CCCGTTGATCCGGTCTTCAT 59.822 55.000 0.00 0.00 46.66 2.57
169 170 1.594833 CCCGTTGATCCGGTCTTCA 59.405 57.895 0.00 0.35 46.66 3.02
170 171 1.153429 CCCCGTTGATCCGGTCTTC 60.153 63.158 0.00 0.00 46.66 2.87
171 172 0.981277 ATCCCCGTTGATCCGGTCTT 60.981 55.000 0.00 0.00 46.66 3.01
172 173 1.382695 ATCCCCGTTGATCCGGTCT 60.383 57.895 0.00 0.00 46.66 3.85
173 174 1.069258 GATCCCCGTTGATCCGGTC 59.931 63.158 0.00 0.00 46.66 4.79
174 175 3.227250 GATCCCCGTTGATCCGGT 58.773 61.111 0.00 0.00 46.66 5.28
178 179 2.638480 TTGATGGATCCCCGTTGATC 57.362 50.000 9.90 4.90 40.37 2.92
179 180 2.509548 TCTTTGATGGATCCCCGTTGAT 59.490 45.455 9.90 0.00 34.29 2.57
180 181 1.912731 TCTTTGATGGATCCCCGTTGA 59.087 47.619 9.90 0.00 34.29 3.18
181 182 2.017049 GTCTTTGATGGATCCCCGTTG 58.983 52.381 9.90 0.00 34.29 4.10
182 183 1.406887 CGTCTTTGATGGATCCCCGTT 60.407 52.381 9.90 0.00 34.29 4.44
183 184 0.178068 CGTCTTTGATGGATCCCCGT 59.822 55.000 9.90 0.00 34.29 5.28
184 185 0.464036 TCGTCTTTGATGGATCCCCG 59.536 55.000 9.90 0.00 34.29 5.73
185 186 2.938956 ATCGTCTTTGATGGATCCCC 57.061 50.000 9.90 1.41 0.00 4.81
186 187 4.524714 TCTCTATCGTCTTTGATGGATCCC 59.475 45.833 9.90 0.00 35.63 3.85
187 188 5.713792 TCTCTATCGTCTTTGATGGATCC 57.286 43.478 4.20 4.20 35.63 3.36
212 213 1.618861 CGATGGATCTCGCGGAATAC 58.381 55.000 6.13 1.01 0.00 1.89
213 214 0.526211 CCGATGGATCTCGCGGAATA 59.474 55.000 6.13 0.00 46.29 1.75
214 215 1.290324 CCGATGGATCTCGCGGAAT 59.710 57.895 6.13 0.00 46.29 3.01
215 216 2.728180 CCGATGGATCTCGCGGAA 59.272 61.111 6.13 0.00 46.29 4.30
216 217 3.978491 GCCGATGGATCTCGCGGA 61.978 66.667 19.64 2.40 46.29 5.54
218 219 4.328231 TCGCCGATGGATCTCGCG 62.328 66.667 0.00 0.00 41.53 5.87
219 220 2.731348 GTCGCCGATGGATCTCGC 60.731 66.667 0.00 0.00 37.33 5.03
220 221 1.658717 GTGTCGCCGATGGATCTCG 60.659 63.158 0.00 0.00 38.37 4.04
221 222 0.872021 GTGTGTCGCCGATGGATCTC 60.872 60.000 0.00 0.00 0.00 2.75
222 223 1.141881 GTGTGTCGCCGATGGATCT 59.858 57.895 0.00 0.00 0.00 2.75
223 224 0.460284 AAGTGTGTCGCCGATGGATC 60.460 55.000 0.00 0.00 0.00 3.36
224 225 0.460284 GAAGTGTGTCGCCGATGGAT 60.460 55.000 0.00 0.00 0.00 3.41
225 226 1.080093 GAAGTGTGTCGCCGATGGA 60.080 57.895 0.00 0.00 0.00 3.41
226 227 2.100631 GGAAGTGTGTCGCCGATGG 61.101 63.158 0.00 0.00 0.00 3.51
227 228 1.374125 TGGAAGTGTGTCGCCGATG 60.374 57.895 0.00 0.00 0.00 3.84
228 229 1.374252 GTGGAAGTGTGTCGCCGAT 60.374 57.895 0.00 0.00 0.00 4.18
229 230 2.028484 GTGGAAGTGTGTCGCCGA 59.972 61.111 0.00 0.00 0.00 5.54
230 231 2.279851 TGTGGAAGTGTGTCGCCG 60.280 61.111 0.00 0.00 0.00 6.46
231 232 1.522806 TGTGTGGAAGTGTGTCGCC 60.523 57.895 0.00 0.00 0.00 5.54
232 233 1.641677 GTGTGTGGAAGTGTGTCGC 59.358 57.895 0.00 0.00 0.00 5.19
233 234 1.157870 GGGTGTGTGGAAGTGTGTCG 61.158 60.000 0.00 0.00 0.00 4.35
234 235 0.180406 AGGGTGTGTGGAAGTGTGTC 59.820 55.000 0.00 0.00 0.00 3.67
235 236 0.623723 AAGGGTGTGTGGAAGTGTGT 59.376 50.000 0.00 0.00 0.00 3.72
236 237 1.308998 GAAGGGTGTGTGGAAGTGTG 58.691 55.000 0.00 0.00 0.00 3.82
237 238 0.179056 CGAAGGGTGTGTGGAAGTGT 60.179 55.000 0.00 0.00 0.00 3.55
238 239 0.105964 TCGAAGGGTGTGTGGAAGTG 59.894 55.000 0.00 0.00 0.00 3.16
239 240 1.056660 ATCGAAGGGTGTGTGGAAGT 58.943 50.000 0.00 0.00 0.00 3.01
240 241 3.328382 TTATCGAAGGGTGTGTGGAAG 57.672 47.619 0.00 0.00 0.00 3.46
241 242 3.605634 CATTATCGAAGGGTGTGTGGAA 58.394 45.455 0.00 0.00 0.00 3.53
242 243 2.093181 CCATTATCGAAGGGTGTGTGGA 60.093 50.000 0.00 0.00 31.57 4.02
243 244 2.288666 CCATTATCGAAGGGTGTGTGG 58.711 52.381 0.00 0.00 31.57 4.17
244 245 2.093181 TCCCATTATCGAAGGGTGTGTG 60.093 50.000 13.26 0.00 43.31 3.82
245 246 2.170607 CTCCCATTATCGAAGGGTGTGT 59.829 50.000 13.26 0.00 43.31 3.72
246 247 2.434336 TCTCCCATTATCGAAGGGTGTG 59.566 50.000 13.26 7.26 43.31 3.82
247 248 2.759355 TCTCCCATTATCGAAGGGTGT 58.241 47.619 13.26 0.00 43.31 4.16
248 249 3.668447 CATCTCCCATTATCGAAGGGTG 58.332 50.000 13.26 11.52 43.31 4.61
249 250 2.039084 GCATCTCCCATTATCGAAGGGT 59.961 50.000 13.26 0.00 43.31 4.34
250 251 2.038952 TGCATCTCCCATTATCGAAGGG 59.961 50.000 8.78 8.78 44.22 3.95
251 252 3.070018 GTGCATCTCCCATTATCGAAGG 58.930 50.000 0.00 0.00 0.00 3.46
252 253 3.070018 GGTGCATCTCCCATTATCGAAG 58.930 50.000 0.00 0.00 0.00 3.79
253 254 2.547855 CGGTGCATCTCCCATTATCGAA 60.548 50.000 0.00 0.00 0.00 3.71
254 255 1.000843 CGGTGCATCTCCCATTATCGA 59.999 52.381 0.00 0.00 0.00 3.59
255 256 1.432514 CGGTGCATCTCCCATTATCG 58.567 55.000 0.00 0.00 0.00 2.92
256 257 1.160137 GCGGTGCATCTCCCATTATC 58.840 55.000 0.00 0.00 0.00 1.75
257 258 0.250901 GGCGGTGCATCTCCCATTAT 60.251 55.000 0.00 0.00 0.00 1.28
258 259 1.148273 GGCGGTGCATCTCCCATTA 59.852 57.895 0.00 0.00 0.00 1.90
259 260 2.124151 GGCGGTGCATCTCCCATT 60.124 61.111 0.00 0.00 0.00 3.16
260 261 2.898920 CTTGGCGGTGCATCTCCCAT 62.899 60.000 2.92 0.00 0.00 4.00
261 262 3.626996 CTTGGCGGTGCATCTCCCA 62.627 63.158 2.92 2.62 0.00 4.37
262 263 2.825836 CTTGGCGGTGCATCTCCC 60.826 66.667 2.92 0.00 0.00 4.30
263 264 2.109126 GTCTTGGCGGTGCATCTCC 61.109 63.158 0.00 0.00 0.00 3.71
264 265 0.745845 ATGTCTTGGCGGTGCATCTC 60.746 55.000 0.00 0.00 0.00 2.75
265 266 1.028330 CATGTCTTGGCGGTGCATCT 61.028 55.000 0.00 0.00 0.00 2.90
266 267 1.430632 CATGTCTTGGCGGTGCATC 59.569 57.895 0.00 0.00 0.00 3.91
267 268 2.048023 CCATGTCTTGGCGGTGCAT 61.048 57.895 0.00 0.00 39.09 3.96
268 269 2.672651 CCATGTCTTGGCGGTGCA 60.673 61.111 0.00 0.00 39.09 4.57
269 270 2.359850 TCCATGTCTTGGCGGTGC 60.360 61.111 0.00 0.00 46.01 5.01
270 271 0.249120 TAGTCCATGTCTTGGCGGTG 59.751 55.000 0.00 0.00 46.01 4.94
271 272 0.537188 CTAGTCCATGTCTTGGCGGT 59.463 55.000 0.00 0.00 46.01 5.68
272 273 0.179073 CCTAGTCCATGTCTTGGCGG 60.179 60.000 0.00 0.00 46.01 6.13
273 274 0.537188 ACCTAGTCCATGTCTTGGCG 59.463 55.000 12.70 0.00 46.01 5.69
274 275 3.031736 TCTACCTAGTCCATGTCTTGGC 58.968 50.000 12.70 0.00 46.01 4.52
276 277 5.441500 TCTCTCTACCTAGTCCATGTCTTG 58.558 45.833 0.00 0.00 0.00 3.02
277 278 5.718801 TCTCTCTACCTAGTCCATGTCTT 57.281 43.478 0.00 0.00 0.00 3.01
278 279 5.718801 TTCTCTCTACCTAGTCCATGTCT 57.281 43.478 0.00 0.00 0.00 3.41
279 280 6.969993 ATTTCTCTCTACCTAGTCCATGTC 57.030 41.667 0.00 0.00 0.00 3.06
280 281 7.741554 AAATTTCTCTCTACCTAGTCCATGT 57.258 36.000 0.00 0.00 0.00 3.21
283 284 8.925338 GGAATAAATTTCTCTCTACCTAGTCCA 58.075 37.037 0.00 0.00 0.00 4.02
284 285 8.925338 TGGAATAAATTTCTCTCTACCTAGTCC 58.075 37.037 0.00 0.00 0.00 3.85
303 304 9.706691 GGTGACGATTATCTAAAGATGGAATAA 57.293 33.333 2.66 0.00 36.05 1.40
324 325 2.094762 AGTGTTGATAAGGCGGTGAC 57.905 50.000 0.00 0.00 0.00 3.67
325 326 3.965379 TTAGTGTTGATAAGGCGGTGA 57.035 42.857 0.00 0.00 0.00 4.02
326 327 5.365403 TTTTTAGTGTTGATAAGGCGGTG 57.635 39.130 0.00 0.00 0.00 4.94
374 375 5.112686 CACCTTATCAGGCTTTGACTAGTC 58.887 45.833 16.32 16.32 45.56 2.59
383 384 3.117738 CAGATTCCCACCTTATCAGGCTT 60.118 47.826 0.00 0.00 45.56 4.35
459 462 1.426816 CGCAGCGCACATCTCAATCT 61.427 55.000 11.47 0.00 0.00 2.40
460 463 1.011463 CGCAGCGCACATCTCAATC 60.011 57.895 11.47 0.00 0.00 2.67
483 486 1.880027 CAGGGCTGGTTACACAGTTTC 59.120 52.381 0.00 0.00 40.59 2.78
539 542 1.143183 GAATGGAAGACGGGCGCTA 59.857 57.895 7.64 0.00 0.00 4.26
552 555 3.507622 GGGTTTTCTTGGTGAGAGAATGG 59.492 47.826 0.00 0.00 35.37 3.16
562 565 3.093814 ACGTTTCTTGGGTTTTCTTGGT 58.906 40.909 0.00 0.00 0.00 3.67
574 577 0.586319 ATGCACACGGACGTTTCTTG 59.414 50.000 0.00 0.00 0.00 3.02
606 609 2.809181 CACAAATGTGCTGCTGCTG 58.191 52.632 17.00 8.52 39.39 4.41
643 646 1.153349 GCTTTAGACGAGGGGCAGG 60.153 63.158 0.00 0.00 0.00 4.85
696 700 2.751913 CGACGGAGAGTGGGAGACG 61.752 68.421 0.00 0.00 0.00 4.18
697 701 3.053849 GCGACGGAGAGTGGGAGAC 62.054 68.421 0.00 0.00 0.00 3.36
698 702 2.750637 GCGACGGAGAGTGGGAGA 60.751 66.667 0.00 0.00 0.00 3.71
699 703 3.827898 GGCGACGGAGAGTGGGAG 61.828 72.222 0.00 0.00 0.00 4.30
717 721 1.613630 AGGAGAGGGCAACGGTGAT 60.614 57.895 3.55 0.00 37.60 3.06
752 756 4.704103 AGGCGAGCACTGGGGAGA 62.704 66.667 0.00 0.00 0.00 3.71
845 854 3.320078 CGATAACGGCGACAGCGG 61.320 66.667 16.62 0.00 46.35 5.52
846 855 2.565394 GACGATAACGGCGACAGCG 61.565 63.158 16.62 17.55 46.35 5.18
847 856 3.296584 GACGATAACGGCGACAGC 58.703 61.111 16.62 1.69 44.46 4.40
884 893 4.154347 GAGGCGGAGGTGGAGCTG 62.154 72.222 0.00 0.00 0.00 4.24
898 907 2.492090 CACGAGGAAGAGCGGAGG 59.508 66.667 0.00 0.00 0.00 4.30
899 908 2.202676 GCACGAGGAAGAGCGGAG 60.203 66.667 0.00 0.00 0.00 4.63
900 909 2.676822 AGCACGAGGAAGAGCGGA 60.677 61.111 0.00 0.00 32.99 5.54
901 910 2.202676 GAGCACGAGGAAGAGCGG 60.203 66.667 0.00 0.00 32.99 5.52
902 911 2.578178 CGAGCACGAGGAAGAGCG 60.578 66.667 0.00 0.00 42.66 5.03
903 912 2.827383 AAGCGAGCACGAGGAAGAGC 62.827 60.000 8.01 0.00 42.66 4.09
905 914 1.213013 GAAGCGAGCACGAGGAAGA 59.787 57.895 8.01 0.00 42.66 2.87
906 915 0.389166 AAGAAGCGAGCACGAGGAAG 60.389 55.000 8.01 0.00 42.66 3.46
907 916 0.388649 GAAGAAGCGAGCACGAGGAA 60.389 55.000 8.01 0.00 42.66 3.36
908 917 1.213013 GAAGAAGCGAGCACGAGGA 59.787 57.895 8.01 0.00 42.66 3.71
909 918 1.807573 GGAAGAAGCGAGCACGAGG 60.808 63.158 8.01 0.00 42.66 4.63
910 919 0.800300 GAGGAAGAAGCGAGCACGAG 60.800 60.000 8.01 0.00 42.66 4.18
911 920 1.213013 GAGGAAGAAGCGAGCACGA 59.787 57.895 8.01 0.00 42.66 4.35
912 921 1.807573 GGAGGAAGAAGCGAGCACG 60.808 63.158 0.00 0.00 42.93 5.34
913 922 1.448717 GGGAGGAAGAAGCGAGCAC 60.449 63.158 0.00 0.00 0.00 4.40
914 923 2.660064 GGGGAGGAAGAAGCGAGCA 61.660 63.158 0.00 0.00 0.00 4.26
915 924 1.904990 AAGGGGAGGAAGAAGCGAGC 61.905 60.000 0.00 0.00 0.00 5.03
916 925 0.176910 GAAGGGGAGGAAGAAGCGAG 59.823 60.000 0.00 0.00 0.00 5.03
917 926 1.265454 GGAAGGGGAGGAAGAAGCGA 61.265 60.000 0.00 0.00 0.00 4.93
918 927 1.222113 GGAAGGGGAGGAAGAAGCG 59.778 63.158 0.00 0.00 0.00 4.68
919 928 1.610327 GGGAAGGGGAGGAAGAAGC 59.390 63.158 0.00 0.00 0.00 3.86
920 929 1.282653 GGGGGAAGGGGAGGAAGAAG 61.283 65.000 0.00 0.00 0.00 2.85
921 930 1.230182 GGGGGAAGGGGAGGAAGAA 60.230 63.158 0.00 0.00 0.00 2.52
924 933 1.772561 AAGAGGGGGAAGGGGAGGAA 61.773 60.000 0.00 0.00 0.00 3.36
926 935 0.045778 TAAAGAGGGGGAAGGGGAGG 59.954 60.000 0.00 0.00 0.00 4.30
933 942 0.545787 TCTGCGGTAAAGAGGGGGAA 60.546 55.000 0.00 0.00 0.00 3.97
954 963 1.630878 TCTGGCCCTCTCTTTCTTTCC 59.369 52.381 0.00 0.00 0.00 3.13
957 966 1.284313 CCTCTGGCCCTCTCTTTCTT 58.716 55.000 0.00 0.00 0.00 2.52
961 970 2.041928 CCCCTCTGGCCCTCTCTT 59.958 66.667 0.00 0.00 0.00 2.85
1019 1080 0.609957 TCGGCGTAACAGAGGAAGGA 60.610 55.000 6.85 0.00 0.00 3.36
1035 1096 0.542938 TCATAGGGCCCAGAGATCGG 60.543 60.000 27.56 4.13 0.00 4.18
1038 1099 2.995746 TGAATCATAGGGCCCAGAGAT 58.004 47.619 27.56 20.06 0.00 2.75
1095 1157 4.541779 TGAAACGCAATCCACACATAAAC 58.458 39.130 0.00 0.00 0.00 2.01
1104 1166 6.698008 AGAAATCATATGAAACGCAATCCA 57.302 33.333 9.99 0.00 0.00 3.41
1120 1182 8.290463 AGGAGTCCTAGGTATAGTAGAAATCA 57.710 38.462 10.94 0.00 28.47 2.57
1128 1190 4.143543 GCGAAAGGAGTCCTAGGTATAGT 58.856 47.826 13.43 0.00 31.13 2.12
1129 1191 4.023021 GTGCGAAAGGAGTCCTAGGTATAG 60.023 50.000 13.43 1.47 31.13 1.31
1130 1192 3.887716 GTGCGAAAGGAGTCCTAGGTATA 59.112 47.826 13.43 0.00 31.13 1.47
1131 1193 2.694109 GTGCGAAAGGAGTCCTAGGTAT 59.306 50.000 13.43 0.00 31.13 2.73
1132 1194 2.097825 GTGCGAAAGGAGTCCTAGGTA 58.902 52.381 13.43 1.27 31.13 3.08
1147 1209 5.350091 TCAATCGAAATTGAATGTAGTGCGA 59.650 36.000 0.00 0.00 46.41 5.10
1192 1254 4.740695 CGCCGTAGAAAAGAGAAAGGATAG 59.259 45.833 0.00 0.00 0.00 2.08
1206 1268 1.591158 GATTCGATTTGCGCCGTAGAA 59.409 47.619 4.18 4.85 40.61 2.10
1284 1374 4.456535 TCGAAGAAACCACCAAAATCTCA 58.543 39.130 0.00 0.00 0.00 3.27
1288 1378 4.069304 TCGATCGAAGAAACCACCAAAAT 58.931 39.130 16.99 0.00 43.58 1.82
1291 1381 2.823924 TCGATCGAAGAAACCACCAA 57.176 45.000 16.99 0.00 43.58 3.67
1293 1383 4.477302 TTTTTCGATCGAAGAAACCACC 57.523 40.909 26.07 0.00 43.58 4.61
1294 1384 7.241376 ACATATTTTTCGATCGAAGAAACCAC 58.759 34.615 30.04 0.00 43.58 4.16
1324 1414 2.663196 GGACACACCGAGGAAGGG 59.337 66.667 0.00 0.00 35.02 3.95
1325 1415 2.172483 CTGGGACACACCGAGGAAGG 62.172 65.000 0.00 0.00 40.18 3.46
1326 1416 1.185618 TCTGGGACACACCGAGGAAG 61.186 60.000 0.00 0.00 43.34 3.46
1327 1417 1.152419 TCTGGGACACACCGAGGAA 60.152 57.895 0.00 0.00 43.34 3.36
1328 1418 1.906824 GTCTGGGACACACCGAGGA 60.907 63.158 0.00 0.00 43.34 3.71
1329 1419 2.207229 TGTCTGGGACACACCGAGG 61.207 63.158 0.00 0.00 43.34 4.63
1347 1460 0.971447 GAGGCCGACCCAGTTCTAGT 60.971 60.000 0.00 0.00 36.11 2.57
1422 1535 5.012561 ACAAGAAACAGACTGAGGAGCTAAT 59.987 40.000 10.08 0.00 0.00 1.73
1467 1580 2.161855 TGCGAAAATGCAGACAAGGAT 58.838 42.857 0.00 0.00 40.62 3.24
1544 1657 5.403766 GCTGTGAATTCACCTATACAGATCG 59.596 44.000 30.66 5.39 45.88 3.69
1589 1702 4.593677 GGTTTACCCTCCTCCCCA 57.406 61.111 0.00 0.00 0.00 4.96
1615 1777 3.563390 GTCCTATGAAGAAGGCATTCAGC 59.437 47.826 14.34 5.12 39.86 4.26
1684 1846 6.374333 GTCCAGAATGCACCAAGTAAGATTAA 59.626 38.462 0.00 0.00 31.97 1.40
1686 1848 4.702131 GTCCAGAATGCACCAAGTAAGATT 59.298 41.667 0.00 0.00 31.97 2.40
1687 1849 4.265073 GTCCAGAATGCACCAAGTAAGAT 58.735 43.478 0.00 0.00 31.97 2.40
1689 1851 2.749621 GGTCCAGAATGCACCAAGTAAG 59.250 50.000 0.00 0.00 31.97 2.34
1690 1852 2.790433 GGTCCAGAATGCACCAAGTAA 58.210 47.619 0.00 0.00 31.97 2.24
1697 1859 1.003839 TCCACGGTCCAGAATGCAC 60.004 57.895 0.00 0.00 31.97 4.57
1713 1875 1.598701 GCACAGCCCCATTCAACTCC 61.599 60.000 0.00 0.00 0.00 3.85
1741 1903 1.872388 TGCACGATTGAAACCGAAGA 58.128 45.000 0.00 0.00 0.00 2.87
1747 1909 6.695292 AAAAAGATCATGCACGATTGAAAC 57.305 33.333 0.00 0.00 0.00 2.78
1840 2002 7.121272 CAGTGTAACACAAACTAAAACCGTAG 58.879 38.462 0.00 0.00 41.43 3.51
1895 2242 2.719739 CATGAGGTGAAGTGCCAGATT 58.280 47.619 0.00 0.00 0.00 2.40
1896 2243 1.681166 GCATGAGGTGAAGTGCCAGAT 60.681 52.381 0.00 0.00 0.00 2.90
1957 2304 1.999048 CGGTGCATGCATCAAATTGT 58.001 45.000 29.40 0.00 0.00 2.71
2023 2370 2.102925 ACAGGTTTGCCCATTTTGTCAG 59.897 45.455 0.00 0.00 34.66 3.51
2092 2439 6.547510 ACATTCTGAATAAGAGGGCATTTACC 59.452 38.462 1.98 0.00 35.91 2.85
2093 2440 7.067494 ACACATTCTGAATAAGAGGGCATTTAC 59.933 37.037 1.98 0.00 35.91 2.01
2112 2459 5.407407 TCTCTGGGAACTAGAACACATTC 57.593 43.478 0.00 0.00 34.78 2.67
2145 2492 3.242867 AGAGTGAACATTCAGAGGTCCA 58.757 45.455 0.00 0.00 37.98 4.02
2350 2958 4.375272 AGTTAAGCACATCTCGATCCATG 58.625 43.478 0.00 0.00 0.00 3.66
2353 2961 4.046938 TGAGTTAAGCACATCTCGATCC 57.953 45.455 0.00 0.00 0.00 3.36
2361 2969 5.005740 ACATGTCACATGAGTTAAGCACAT 58.994 37.500 24.98 0.00 0.00 3.21
2643 3254 0.599558 CGACTAACGAAGTGGGTGGA 59.400 55.000 0.00 0.00 45.00 4.02
3442 4484 7.445402 GCAAGATAGATTTATTTAGGTCCAGCA 59.555 37.037 0.00 0.00 0.00 4.41
3555 4623 9.784531 AGTCAAAAGAAGAATCTTGAACTATGA 57.215 29.630 0.00 0.00 45.19 2.15
3816 4929 2.919229 CGATGGCATTTTTGAGCAGTTC 59.081 45.455 0.00 0.00 0.00 3.01
3869 4982 5.939764 TTGAGCTGACAGTAATGGTATCT 57.060 39.130 3.99 0.00 0.00 1.98
3872 4985 6.070824 TGAGATTTGAGCTGACAGTAATGGTA 60.071 38.462 3.99 0.00 0.00 3.25
3927 5042 1.168714 GAGAACTGGCATGTTGGTCC 58.831 55.000 6.99 0.00 0.00 4.46
3938 5053 4.739793 AGATGAGATAGAGGGAGAACTGG 58.260 47.826 0.00 0.00 0.00 4.00
3942 5057 3.073798 AGCGAGATGAGATAGAGGGAGAA 59.926 47.826 0.00 0.00 0.00 2.87
3958 5073 1.335597 CCACACTTTGTCGTAGCGAGA 60.336 52.381 0.00 0.00 36.23 4.04
3959 5074 1.060713 CCACACTTTGTCGTAGCGAG 58.939 55.000 0.00 0.00 36.23 5.03
3960 5075 0.319211 CCCACACTTTGTCGTAGCGA 60.319 55.000 0.00 0.00 0.00 4.93
3962 5077 1.145803 GACCCACACTTTGTCGTAGC 58.854 55.000 0.00 0.00 0.00 3.58
3963 5078 1.607251 GGGACCCACACTTTGTCGTAG 60.607 57.143 5.33 0.00 0.00 3.51
3965 5080 1.147600 GGGACCCACACTTTGTCGT 59.852 57.895 5.33 0.00 0.00 4.34
3966 5081 1.147376 TGGGACCCACACTTTGTCG 59.853 57.895 9.95 0.00 0.00 4.35
4010 5125 8.470002 AGTAAGCAAGCAAATAATTTTAGAGGG 58.530 33.333 0.00 0.00 0.00 4.30
4025 5140 2.104792 ACTTGTCAGGAGTAAGCAAGCA 59.895 45.455 0.00 0.00 39.86 3.91
4050 5165 8.078060 TCTATCTCACAATGATAAGTGTGGAA 57.922 34.615 10.70 0.13 44.29 3.53
4080 5195 4.155099 CGTAGACTCACATGTCAGTTCTCT 59.845 45.833 3.10 0.00 39.27 3.10
4081 5196 4.407818 CGTAGACTCACATGTCAGTTCTC 58.592 47.826 3.10 0.00 39.27 2.87
4082 5197 3.191581 CCGTAGACTCACATGTCAGTTCT 59.808 47.826 3.10 5.54 39.27 3.01
4083 5198 3.502920 CCGTAGACTCACATGTCAGTTC 58.497 50.000 3.10 0.00 39.27 3.01
4084 5199 2.231478 CCCGTAGACTCACATGTCAGTT 59.769 50.000 3.10 0.00 39.27 3.16
4085 5200 1.819288 CCCGTAGACTCACATGTCAGT 59.181 52.381 0.35 0.35 39.27 3.41
4096 5211 9.538508 GTTATATGACAAAAATACCCGTAGACT 57.461 33.333 0.00 0.00 0.00 3.24
4102 5217 7.936584 ACCATGTTATATGACAAAAATACCCG 58.063 34.615 4.23 0.00 32.47 5.28
4119 5236 4.336993 GTGTCAAACCTGTTGACCATGTTA 59.663 41.667 14.76 0.00 46.01 2.41
4120 5237 3.130340 GTGTCAAACCTGTTGACCATGTT 59.870 43.478 14.76 0.00 46.01 2.71
4132 5249 3.279434 GTCAGGTCAAAGTGTCAAACCT 58.721 45.455 0.00 0.00 40.97 3.50
4133 5250 3.013921 TGTCAGGTCAAAGTGTCAAACC 58.986 45.455 0.00 0.00 0.00 3.27
4135 5252 6.375736 TGTTATTGTCAGGTCAAAGTGTCAAA 59.624 34.615 0.00 0.00 0.00 2.69
4136 5253 5.883115 TGTTATTGTCAGGTCAAAGTGTCAA 59.117 36.000 0.00 0.00 0.00 3.18
4137 5254 5.432645 TGTTATTGTCAGGTCAAAGTGTCA 58.567 37.500 0.00 0.00 0.00 3.58
4138 5255 6.371809 TTGTTATTGTCAGGTCAAAGTGTC 57.628 37.500 0.00 0.00 0.00 3.67
4139 5256 6.321181 ACATTGTTATTGTCAGGTCAAAGTGT 59.679 34.615 0.00 0.00 0.00 3.55
4140 5257 6.738114 ACATTGTTATTGTCAGGTCAAAGTG 58.262 36.000 0.00 0.00 0.00 3.16
4141 5258 6.772716 AGACATTGTTATTGTCAGGTCAAAGT 59.227 34.615 6.59 0.00 44.73 2.66
4142 5259 7.206981 AGACATTGTTATTGTCAGGTCAAAG 57.793 36.000 6.59 0.00 44.73 2.77
4160 5277 4.951715 TGCTCAGAAATGCCATTAGACATT 59.048 37.500 0.00 0.00 38.11 2.71
4191 5440 4.178540 CTCAAAAATGCCATCGCTTCATT 58.821 39.130 0.00 0.00 35.36 2.57
4193 5442 2.671914 GCTCAAAAATGCCATCGCTTCA 60.672 45.455 0.00 0.00 35.36 3.02
4195 5444 1.273048 TGCTCAAAAATGCCATCGCTT 59.727 42.857 0.00 0.00 35.36 4.68
4232 5481 3.951680 AGTTGTGTCCCACTAAGTTTTGG 59.048 43.478 0.00 0.00 35.11 3.28
4279 5531 8.287503 GCGTATTCGTTATGGGATTTTCTAAAT 58.712 33.333 0.00 0.00 39.49 1.40
4318 5587 6.753279 TGCACTTATTCTTCTTAATGCAATGC 59.247 34.615 0.00 0.00 38.78 3.56
4366 7087 5.939883 ACAAGAATCAATGAGATCGTTTGGA 59.060 36.000 0.00 0.00 35.39 3.53
4368 7089 7.300320 TGAACAAGAATCAATGAGATCGTTTG 58.700 34.615 0.00 0.00 35.39 2.93
4434 7161 1.985159 TGGTGCTCACTAAACCTCCAT 59.015 47.619 0.00 0.00 34.90 3.41
4487 7214 5.687166 TTCCCCGATAAAAGCTAAAGAGA 57.313 39.130 0.00 0.00 0.00 3.10
4778 7513 5.511234 AGCCATATTTGCTTCATCTTCAC 57.489 39.130 0.00 0.00 34.87 3.18
4899 7636 1.203063 AGAGCGGCATCCATACCTAGA 60.203 52.381 1.45 0.00 0.00 2.43
4906 7643 1.047596 ACAGAGAGAGCGGCATCCAT 61.048 55.000 1.45 0.00 0.00 3.41
5087 7824 1.276622 CCCAGCTACCAGTAACCTGT 58.723 55.000 0.00 0.00 36.95 4.00
5483 8238 5.430089 AGCCTCAAATATAGTCTTTGGAGGT 59.570 40.000 8.43 0.33 35.55 3.85
5906 8661 1.104577 GTGCTACCTCTCCTCCTCCG 61.105 65.000 0.00 0.00 0.00 4.63
5927 8682 1.133181 TGTGGATCCCAAGCCTGTGA 61.133 55.000 9.90 0.00 34.18 3.58
6122 8880 2.442413 GCAAGGTTGTTACATGGGCTA 58.558 47.619 0.00 0.00 0.00 3.93
6328 9094 7.482743 CAGAAATAAACATCCTTCACATCAACG 59.517 37.037 0.00 0.00 0.00 4.10
6661 9431 3.603330 AATCCCCCACTGCCCCTCT 62.603 63.158 0.00 0.00 0.00 3.69
6790 9560 7.332430 CAGAACAAACCTAACATAACGATGGTA 59.668 37.037 0.00 0.00 37.39 3.25
7145 9918 6.660949 GCCCTGATGCCTATGTTTCTAATATT 59.339 38.462 0.00 0.00 0.00 1.28
7206 9979 7.359264 CCTGAAACACGATGTACTTCAACTAAG 60.359 40.741 9.22 0.00 41.33 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.