Multiple sequence alignment - TraesCS5B01G239400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G239400 chr5B 100.000 2522 0 0 1 2522 419761017 419758496 0.000000e+00 4658
1 TraesCS5B01G239400 chr5B 82.415 1143 166 25 1115 2247 497939976 497941093 0.000000e+00 965
2 TraesCS5B01G239400 chr2B 81.692 1584 233 34 697 2250 612862806 612864362 0.000000e+00 1266
3 TraesCS5B01G239400 chr2B 79.980 989 160 33 1002 1978 549259629 549258667 0.000000e+00 695
4 TraesCS5B01G239400 chr2B 97.464 276 7 0 2247 2522 775593382 775593657 2.940000e-129 472
5 TraesCS5B01G239400 chr2B 97.101 276 8 0 2247 2522 788168084 788168359 1.370000e-127 466
6 TraesCS5B01G239400 chr2B 96.763 278 9 0 2245 2522 25447289 25447566 4.910000e-127 464
7 TraesCS5B01G239400 chr2B 89.844 128 11 2 575 701 612857060 612857186 2.010000e-36 163
8 TraesCS5B01G239400 chr1B 79.913 1613 245 53 574 2149 676308925 676307355 0.000000e+00 1110
9 TraesCS5B01G239400 chr4A 78.914 1712 299 37 574 2250 720108553 720106869 0.000000e+00 1105
10 TraesCS5B01G239400 chr4A 80.972 1440 226 28 574 1985 720181121 720179702 0.000000e+00 1098
11 TraesCS5B01G239400 chrUn 80.903 1440 227 28 574 1985 51015133 51013714 0.000000e+00 1092
12 TraesCS5B01G239400 chr2D 75.037 1366 258 55 581 1899 574668406 574669735 7.880000e-155 556
13 TraesCS5B01G239400 chr1D 77.341 993 181 28 624 1588 402285106 402284130 4.740000e-152 547
14 TraesCS5B01G239400 chr7B 96.763 278 9 0 2245 2522 143346115 143345838 4.910000e-127 464
15 TraesCS5B01G239400 chr7B 96.763 278 8 1 2245 2522 633918258 633917982 1.770000e-126 462
16 TraesCS5B01G239400 chr7A 96.763 278 9 0 2245 2522 79739172 79739449 4.910000e-127 464
17 TraesCS5B01G239400 chr5A 96.774 279 7 2 2245 2522 17415134 17415411 4.910000e-127 464
18 TraesCS5B01G239400 chr5A 93.798 129 8 0 1 129 457088464 457088336 7.120000e-46 195
19 TraesCS5B01G239400 chr6B 96.751 277 9 0 2246 2522 113846085 113845809 1.770000e-126 462
20 TraesCS5B01G239400 chr3B 96.416 279 10 0 2244 2522 24257000 24256722 6.360000e-126 460
21 TraesCS5B01G239400 chr5D 88.068 352 32 6 201 546 354942933 354942586 2.340000e-110 409
22 TraesCS5B01G239400 chr5D 94.375 160 9 0 1 160 354943091 354942932 1.940000e-61 246


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G239400 chr5B 419758496 419761017 2521 True 4658.0 4658 100.0000 1 2522 1 chr5B.!!$R1 2521
1 TraesCS5B01G239400 chr5B 497939976 497941093 1117 False 965.0 965 82.4150 1115 2247 1 chr5B.!!$F1 1132
2 TraesCS5B01G239400 chr2B 612862806 612864362 1556 False 1266.0 1266 81.6920 697 2250 1 chr2B.!!$F3 1553
3 TraesCS5B01G239400 chr2B 549258667 549259629 962 True 695.0 695 79.9800 1002 1978 1 chr2B.!!$R1 976
4 TraesCS5B01G239400 chr1B 676307355 676308925 1570 True 1110.0 1110 79.9130 574 2149 1 chr1B.!!$R1 1575
5 TraesCS5B01G239400 chr4A 720106869 720108553 1684 True 1105.0 1105 78.9140 574 2250 1 chr4A.!!$R1 1676
6 TraesCS5B01G239400 chr4A 720179702 720181121 1419 True 1098.0 1098 80.9720 574 1985 1 chr4A.!!$R2 1411
7 TraesCS5B01G239400 chrUn 51013714 51015133 1419 True 1092.0 1092 80.9030 574 1985 1 chrUn.!!$R1 1411
8 TraesCS5B01G239400 chr2D 574668406 574669735 1329 False 556.0 556 75.0370 581 1899 1 chr2D.!!$F1 1318
9 TraesCS5B01G239400 chr1D 402284130 402285106 976 True 547.0 547 77.3410 624 1588 1 chr1D.!!$R1 964
10 TraesCS5B01G239400 chr5D 354942586 354943091 505 True 327.5 409 91.2215 1 546 2 chr5D.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 465 0.17922 CCTGTCTTCGTCGTCGTCTC 60.179 60.0 1.33 0.0 38.33 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2426 2506 0.179124 TTTTTCGCGCCAAAACAGCT 60.179 45.0 12.58 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.603569 GACGAGGAACCAGAAGCAGA 59.396 55.000 0.00 0.00 0.00 4.26
25 26 0.891373 CGAGGAACCAGAAGCAGAGA 59.109 55.000 0.00 0.00 0.00 3.10
33 34 1.544093 CCAGAAGCAGAGAAGCACCAA 60.544 52.381 0.00 0.00 36.85 3.67
47 48 2.298163 AGCACCAAGAATCAGGCAAAAG 59.702 45.455 0.00 0.00 0.00 2.27
51 52 2.028748 CCAAGAATCAGGCAAAAGGGTG 60.029 50.000 0.00 0.00 0.00 4.61
72 73 2.558313 GCGAGTGCAAGCAGGAAC 59.442 61.111 0.00 0.00 42.15 3.62
75 76 0.236711 CGAGTGCAAGCAGGAACAAG 59.763 55.000 0.00 0.00 0.00 3.16
99 100 4.276926 GGCAAATCTCGCTGGAATATCTTT 59.723 41.667 0.00 0.00 0.00 2.52
160 161 3.868754 GCCGGAACAGGTTTTATCTGAGT 60.869 47.826 5.05 0.00 36.22 3.41
162 163 4.760204 CCGGAACAGGTTTTATCTGAGTTT 59.240 41.667 0.00 0.00 36.22 2.66
163 164 5.334879 CCGGAACAGGTTTTATCTGAGTTTG 60.335 44.000 0.00 0.00 36.22 2.93
164 165 5.238650 CGGAACAGGTTTTATCTGAGTTTGT 59.761 40.000 0.00 0.00 36.22 2.83
165 166 6.425721 CGGAACAGGTTTTATCTGAGTTTGTA 59.574 38.462 0.00 0.00 36.22 2.41
166 167 7.360101 CGGAACAGGTTTTATCTGAGTTTGTAG 60.360 40.741 0.00 0.00 36.22 2.74
167 168 7.660208 GGAACAGGTTTTATCTGAGTTTGTAGA 59.340 37.037 0.00 0.00 36.22 2.59
168 169 9.220767 GAACAGGTTTTATCTGAGTTTGTAGAT 57.779 33.333 0.00 0.00 37.42 1.98
169 170 9.574516 AACAGGTTTTATCTGAGTTTGTAGATT 57.425 29.630 0.00 0.00 35.42 2.40
170 171 9.003658 ACAGGTTTTATCTGAGTTTGTAGATTG 57.996 33.333 0.00 0.00 35.42 2.67
171 172 7.965107 CAGGTTTTATCTGAGTTTGTAGATTGC 59.035 37.037 0.00 0.00 35.42 3.56
172 173 7.665559 AGGTTTTATCTGAGTTTGTAGATTGCA 59.334 33.333 0.00 0.00 35.42 4.08
173 174 8.296713 GGTTTTATCTGAGTTTGTAGATTGCAA 58.703 33.333 0.00 0.00 35.42 4.08
174 175 9.334693 GTTTTATCTGAGTTTGTAGATTGCAAG 57.665 33.333 4.94 0.00 35.42 4.01
175 176 5.557891 ATCTGAGTTTGTAGATTGCAAGC 57.442 39.130 6.58 6.58 29.64 4.01
176 177 3.433274 TCTGAGTTTGTAGATTGCAAGCG 59.567 43.478 9.38 0.00 33.32 4.68
177 178 3.398406 TGAGTTTGTAGATTGCAAGCGA 58.602 40.909 9.38 0.06 33.32 4.93
178 179 3.812609 TGAGTTTGTAGATTGCAAGCGAA 59.187 39.130 9.38 0.90 33.32 4.70
179 180 4.455533 TGAGTTTGTAGATTGCAAGCGAAT 59.544 37.500 9.38 0.00 33.32 3.34
180 181 4.974591 AGTTTGTAGATTGCAAGCGAATC 58.025 39.130 9.38 0.00 33.32 2.52
181 182 4.455533 AGTTTGTAGATTGCAAGCGAATCA 59.544 37.500 9.38 4.73 33.03 2.57
182 183 4.340894 TTGTAGATTGCAAGCGAATCAC 57.659 40.909 9.38 4.52 33.03 3.06
183 184 3.333804 TGTAGATTGCAAGCGAATCACA 58.666 40.909 9.38 6.99 33.03 3.58
184 185 3.750652 TGTAGATTGCAAGCGAATCACAA 59.249 39.130 9.38 0.00 33.03 3.33
185 186 3.482722 AGATTGCAAGCGAATCACAAG 57.517 42.857 9.38 0.00 33.03 3.16
186 187 2.163010 AGATTGCAAGCGAATCACAAGG 59.837 45.455 9.38 0.00 33.03 3.61
187 188 1.603456 TTGCAAGCGAATCACAAGGA 58.397 45.000 0.00 0.00 0.00 3.36
188 189 1.825090 TGCAAGCGAATCACAAGGAT 58.175 45.000 0.00 0.00 38.05 3.24
196 197 2.198827 AATCACAAGGATTCCACGCA 57.801 45.000 5.29 0.00 42.62 5.24
197 198 1.453155 ATCACAAGGATTCCACGCAC 58.547 50.000 5.29 0.00 29.81 5.34
198 199 0.948623 TCACAAGGATTCCACGCACG 60.949 55.000 5.29 0.00 0.00 5.34
199 200 2.325082 ACAAGGATTCCACGCACGC 61.325 57.895 5.29 0.00 0.00 5.34
200 201 2.031919 AAGGATTCCACGCACGCA 59.968 55.556 5.29 0.00 0.00 5.24
201 202 2.034879 AAGGATTCCACGCACGCAG 61.035 57.895 5.29 0.00 0.00 5.18
202 203 2.434185 GGATTCCACGCACGCAGA 60.434 61.111 0.00 0.00 0.00 4.26
203 204 1.815421 GGATTCCACGCACGCAGAT 60.815 57.895 0.00 0.00 0.00 2.90
204 205 1.349627 GATTCCACGCACGCAGATG 59.650 57.895 0.00 0.00 0.00 2.90
205 206 2.637715 GATTCCACGCACGCAGATGC 62.638 60.000 0.00 0.00 42.48 3.91
206 207 4.678499 TCCACGCACGCAGATGCA 62.678 61.111 5.55 0.00 46.47 3.96
210 211 3.120385 CGCACGCAGATGCAAGGA 61.120 61.111 5.55 0.00 46.47 3.36
213 214 1.094073 GCACGCAGATGCAAGGATCT 61.094 55.000 5.55 0.00 45.39 2.75
220 221 5.822519 ACGCAGATGCAAGGATCTAAATTAA 59.177 36.000 3.70 0.00 42.21 1.40
225 226 8.074972 CAGATGCAAGGATCTAAATTAAGAAGC 58.925 37.037 3.70 0.00 31.14 3.86
230 231 7.522889 GCAAGGATCTAAATTAAGAAGCCATCC 60.523 40.741 0.00 0.00 0.00 3.51
236 237 2.806945 TTAAGAAGCCATCCACAGGG 57.193 50.000 0.00 0.00 0.00 4.45
242 243 3.983410 AGAAGCCATCCACAGGGTATTAT 59.017 43.478 0.00 0.00 35.44 1.28
243 244 4.042187 AGAAGCCATCCACAGGGTATTATC 59.958 45.833 0.00 0.00 35.44 1.75
256 257 4.080526 AGGGTATTATCAACACTGGACACC 60.081 45.833 0.00 0.00 0.00 4.16
266 267 1.213013 CTGGACACCGTCTCGAAGG 59.787 63.158 0.00 0.00 35.99 3.46
274 275 1.278238 CCGTCTCGAAGGTGTAATGC 58.722 55.000 0.00 0.00 0.00 3.56
279 280 1.920574 CTCGAAGGTGTAATGCTGACG 59.079 52.381 0.00 0.00 0.00 4.35
281 282 1.671850 CGAAGGTGTAATGCTGACGGT 60.672 52.381 0.00 0.00 0.00 4.83
294 295 0.249953 TGACGGTTAAAGCGCCTCAA 60.250 50.000 2.29 0.00 43.79 3.02
363 364 4.991056 TGCTACAAACACTGATCAGAAGAC 59.009 41.667 29.27 8.54 0.00 3.01
378 379 1.785430 GAAGACGACGACACCAGTTTC 59.215 52.381 0.00 0.00 0.00 2.78
400 401 6.474819 TCGATTTTAGCTGACGAAATTGAA 57.525 33.333 0.00 0.00 32.82 2.69
417 418 4.320608 TTGAAGTGGCAGGTTTCATTTC 57.679 40.909 9.09 0.00 31.54 2.17
419 420 3.960102 TGAAGTGGCAGGTTTCATTTCTT 59.040 39.130 5.25 0.00 32.93 2.52
428 429 4.020839 CAGGTTTCATTTCTTGGGCATCTT 60.021 41.667 0.00 0.00 0.00 2.40
440 446 2.189499 GCATCTTCGCCCACCATCC 61.189 63.158 0.00 0.00 0.00 3.51
449 455 1.221840 CCCACCATCCCTGTCTTCG 59.778 63.158 0.00 0.00 0.00 3.79
452 458 0.458543 CACCATCCCTGTCTTCGTCG 60.459 60.000 0.00 0.00 0.00 5.12
455 461 0.523546 CATCCCTGTCTTCGTCGTCG 60.524 60.000 0.00 0.00 38.55 5.12
456 462 0.959372 ATCCCTGTCTTCGTCGTCGT 60.959 55.000 1.33 0.00 38.33 4.34
457 463 1.154263 CCCTGTCTTCGTCGTCGTC 60.154 63.158 1.33 0.00 38.33 4.20
458 464 1.575576 CCCTGTCTTCGTCGTCGTCT 61.576 60.000 1.33 0.00 38.33 4.18
459 465 0.179220 CCTGTCTTCGTCGTCGTCTC 60.179 60.000 1.33 0.00 38.33 3.36
462 468 2.407090 TGTCTTCGTCGTCGTCTCTAA 58.593 47.619 1.33 0.00 38.33 2.10
474 480 3.850273 GTCGTCTCTAATACAACCACACG 59.150 47.826 0.00 0.00 0.00 4.49
485 491 1.166531 AACCACACGCAAGAGCTTCC 61.167 55.000 0.00 0.00 43.62 3.46
516 522 2.473984 GCAGAAAACATGCTTGAACTGC 59.526 45.455 19.02 19.02 40.59 4.40
533 539 7.646446 TGAACTGCATTTTCTGAATTTCATG 57.354 32.000 0.00 0.00 0.00 3.07
546 552 7.988737 TCTGAATTTCATGATAGCAACGAAAT 58.011 30.769 13.16 13.16 39.71 2.17
547 553 7.911727 TCTGAATTTCATGATAGCAACGAAATG 59.088 33.333 17.42 9.21 38.82 2.32
548 554 6.974048 TGAATTTCATGATAGCAACGAAATGG 59.026 34.615 17.42 0.00 38.82 3.16
549 555 6.698008 ATTTCATGATAGCAACGAAATGGA 57.302 33.333 16.48 0.00 38.10 3.41
550 556 6.698008 TTTCATGATAGCAACGAAATGGAT 57.302 33.333 0.00 0.00 29.66 3.41
551 557 7.800155 TTTCATGATAGCAACGAAATGGATA 57.200 32.000 0.00 0.00 29.66 2.59
552 558 7.984422 TTCATGATAGCAACGAAATGGATAT 57.016 32.000 0.00 0.00 0.00 1.63
553 559 7.984422 TCATGATAGCAACGAAATGGATATT 57.016 32.000 0.00 0.00 0.00 1.28
554 560 8.394971 TCATGATAGCAACGAAATGGATATTT 57.605 30.769 0.00 0.00 39.16 1.40
555 561 8.506437 TCATGATAGCAACGAAATGGATATTTC 58.494 33.333 0.00 0.00 45.57 2.17
556 562 7.202016 TGATAGCAACGAAATGGATATTTCC 57.798 36.000 7.06 0.00 46.05 3.13
557 563 4.552166 AGCAACGAAATGGATATTTCCG 57.448 40.909 7.06 5.56 46.05 4.30
558 564 4.196193 AGCAACGAAATGGATATTTCCGA 58.804 39.130 7.06 0.00 46.05 4.55
559 565 4.821805 AGCAACGAAATGGATATTTCCGAT 59.178 37.500 7.06 0.00 46.05 4.18
560 566 4.911610 GCAACGAAATGGATATTTCCGATG 59.088 41.667 7.06 8.05 46.05 3.84
561 567 5.451908 CAACGAAATGGATATTTCCGATGG 58.548 41.667 7.06 0.00 46.05 3.51
562 568 4.968259 ACGAAATGGATATTTCCGATGGA 58.032 39.130 7.06 0.00 46.05 3.41
563 569 5.373222 ACGAAATGGATATTTCCGATGGAA 58.627 37.500 7.06 0.00 46.05 3.53
564 570 6.003950 ACGAAATGGATATTTCCGATGGAAT 58.996 36.000 0.00 0.00 46.05 3.01
565 571 6.490040 ACGAAATGGATATTTCCGATGGAATT 59.510 34.615 0.00 0.00 46.05 2.17
566 572 6.803320 CGAAATGGATATTTCCGATGGAATTG 59.197 38.462 0.00 0.00 46.05 2.32
567 573 7.522073 CGAAATGGATATTTCCGATGGAATTGT 60.522 37.037 0.00 0.00 46.05 2.71
568 574 7.601705 AATGGATATTTCCGATGGAATTGTT 57.398 32.000 0.00 0.00 45.89 2.83
569 575 8.704849 AATGGATATTTCCGATGGAATTGTTA 57.295 30.769 0.00 0.00 45.89 2.41
570 576 8.704849 ATGGATATTTCCGATGGAATTGTTAA 57.295 30.769 0.00 0.00 45.89 2.01
571 577 8.704849 TGGATATTTCCGATGGAATTGTTAAT 57.295 30.769 0.00 0.00 45.89 1.40
572 578 9.800572 TGGATATTTCCGATGGAATTGTTAATA 57.199 29.630 0.00 0.00 45.89 0.98
653 659 1.579429 GTGGTTCGCCGCAGATTTT 59.421 52.632 0.00 0.00 46.67 1.82
905 911 4.176752 GGAAGGGGAATCGCGGCT 62.177 66.667 6.13 0.00 0.00 5.52
932 938 1.226746 GATTAAATCCGGGCGAGGTG 58.773 55.000 0.00 0.00 0.00 4.00
958 985 1.826385 CCCACACCAAATCTCTCACC 58.174 55.000 0.00 0.00 0.00 4.02
963 990 2.233922 ACACCAAATCTCTCACCTACCG 59.766 50.000 0.00 0.00 0.00 4.02
970 997 3.141488 CTCACCTACCGCGCTCCT 61.141 66.667 5.56 0.00 0.00 3.69
973 1000 2.829458 ACCTACCGCGCTCCTCTC 60.829 66.667 5.56 0.00 0.00 3.20
984 1011 1.752310 CTCCTCTCTCTGCTCGCCA 60.752 63.158 0.00 0.00 0.00 5.69
1058 1130 2.125229 CAGAGATGCGTGCCTGCT 60.125 61.111 0.00 0.00 35.36 4.24
1085 1157 0.309302 CTGCGAGAGATCGGATCGTT 59.691 55.000 12.08 4.83 38.66 3.85
1098 1170 2.159841 CGGATCGTTGTACACAAGCAAG 60.160 50.000 0.00 0.00 36.39 4.01
1099 1171 2.412847 GGATCGTTGTACACAAGCAAGC 60.413 50.000 0.00 0.00 36.39 4.01
1101 1174 0.384230 CGTTGTACACAAGCAAGCGG 60.384 55.000 0.00 0.00 36.39 5.52
1204 1277 1.985614 CATCCACTCCAGGTGCTGA 59.014 57.895 0.00 0.00 44.08 4.26
1424 1498 2.359230 GCAGGAGGTGGTGCAGAC 60.359 66.667 0.00 0.00 39.62 3.51
1456 1530 2.977178 CTCGTCTGGCTCCAGCTT 59.023 61.111 10.99 0.00 43.31 3.74
1461 1535 0.540923 GTCTGGCTCCAGCTTCATCT 59.459 55.000 10.99 0.00 43.31 2.90
1479 1553 0.820074 CTACTCCGACTCCTCGCCAT 60.820 60.000 0.00 0.00 38.70 4.40
1501 1575 1.891919 GCATGCCTCGCCGGAATTA 60.892 57.895 5.05 0.00 33.16 1.40
1502 1576 1.444119 GCATGCCTCGCCGGAATTAA 61.444 55.000 5.05 0.00 33.16 1.40
1503 1577 1.238439 CATGCCTCGCCGGAATTAAT 58.762 50.000 5.05 0.00 33.16 1.40
1504 1578 1.069022 CATGCCTCGCCGGAATTAATG 60.069 52.381 5.05 0.00 33.16 1.90
1505 1579 1.282875 GCCTCGCCGGAATTAATGC 59.717 57.895 5.05 0.00 33.16 3.56
1506 1580 1.949257 CCTCGCCGGAATTAATGCC 59.051 57.895 5.05 1.77 33.16 4.40
1507 1581 1.569493 CTCGCCGGAATTAATGCCG 59.431 57.895 25.76 25.76 46.80 5.69
1524 1598 0.882042 CCGGAATCGATGCCTGAAGG 60.882 60.000 20.56 10.13 39.00 3.46
1554 1628 2.347490 GCAACCGCTTCTGGAGGA 59.653 61.111 0.00 0.00 38.31 3.71
1588 1662 1.460504 TCAGGTAGCGATTCTGACGT 58.539 50.000 0.00 0.00 33.21 4.34
1590 1664 1.132453 CAGGTAGCGATTCTGACGTGA 59.868 52.381 0.00 0.00 31.07 4.35
1594 1668 2.654749 AGCGATTCTGACGTGATTGA 57.345 45.000 0.00 0.00 0.00 2.57
1601 1675 4.990543 TTCTGACGTGATTGATGTTGAC 57.009 40.909 0.00 0.00 0.00 3.18
1614 1688 7.665145 TGATTGATGTTGACTCAGGTATGAAAA 59.335 33.333 0.00 0.00 34.23 2.29
1615 1689 8.585471 ATTGATGTTGACTCAGGTATGAAAAT 57.415 30.769 0.00 0.00 34.23 1.82
1623 1697 7.471721 TGACTCAGGTATGAAAATTAATTGCG 58.528 34.615 0.39 0.00 34.23 4.85
1628 1702 6.198966 CAGGTATGAAAATTAATTGCGGCTTC 59.801 38.462 0.39 2.35 0.00 3.86
1645 1719 4.020218 CGGCTTCCCATATAAATCTCCTGA 60.020 45.833 0.00 0.00 0.00 3.86
1668 1742 8.409358 TGATGATAATACAGAGAGGAAATCGA 57.591 34.615 0.00 0.00 0.00 3.59
1763 1841 2.228343 AGAGCTTGCTTCTGAAACATGC 59.772 45.455 18.49 18.49 35.39 4.06
1772 1850 4.321718 CTTCTGAAACATGCAGAGGAAGA 58.678 43.478 5.38 0.00 42.74 2.87
1780 1858 4.491675 ACATGCAGAGGAAGAGGATAGAT 58.508 43.478 0.00 0.00 0.00 1.98
1781 1859 4.906664 ACATGCAGAGGAAGAGGATAGATT 59.093 41.667 0.00 0.00 0.00 2.40
1784 1862 4.064388 GCAGAGGAAGAGGATAGATTTGC 58.936 47.826 0.00 0.00 0.00 3.68
1790 1868 6.118852 AGGAAGAGGATAGATTTGCTGAAAC 58.881 40.000 0.00 0.00 0.00 2.78
1802 1880 8.345724 AGATTTGCTGAAACTGATAAACTGAT 57.654 30.769 0.00 0.00 0.00 2.90
1823 1901 7.127955 ACTGATAGATTGTCAGGAAGGGTTTAT 59.872 37.037 7.89 0.00 45.72 1.40
1833 1911 5.016173 CAGGAAGGGTTTATTCATGTGGAA 58.984 41.667 0.00 0.00 40.46 3.53
1839 1917 5.262588 GGTTTATTCATGTGGAATCACCC 57.737 43.478 0.00 0.00 42.62 4.61
1859 1937 3.023832 CCAATTGGGGAGATTACCACAC 58.976 50.000 17.36 0.00 43.55 3.82
1863 1941 3.885976 TGGGGAGATTACCACACAAAA 57.114 42.857 0.00 0.00 38.54 2.44
1864 1942 4.186077 TGGGGAGATTACCACACAAAAA 57.814 40.909 0.00 0.00 38.54 1.94
1869 1947 5.535030 GGGAGATTACCACACAAAAAGAGTT 59.465 40.000 0.00 0.00 0.00 3.01
1882 1960 7.013655 ACACAAAAAGAGTTGATCTAGCATTGT 59.986 33.333 0.00 0.00 37.23 2.71
1923 2002 7.422465 AAACCATGCTATTGTGGATTATGTT 57.578 32.000 0.00 0.00 38.86 2.71
1968 2047 9.668497 GATGATATTGAGAATGATGAGGATGAA 57.332 33.333 0.00 0.00 0.00 2.57
1975 2054 8.026396 TGAGAATGATGAGGATGAATCAGTTA 57.974 34.615 0.00 0.00 36.31 2.24
1985 2064 7.719193 TGAGGATGAATCAGTTAAAAGTGACAA 59.281 33.333 2.42 0.00 40.86 3.18
1986 2065 8.103948 AGGATGAATCAGTTAAAAGTGACAAG 57.896 34.615 2.42 0.00 40.86 3.16
1989 2068 5.534654 TGAATCAGTTAAAAGTGACAAGGGG 59.465 40.000 2.42 0.00 40.86 4.79
1997 2076 5.491323 AAAAGTGACAAGGGGAAAAACAA 57.509 34.783 0.00 0.00 0.00 2.83
2008 2087 3.901222 GGGGAAAAACAAATGGAGGAAGA 59.099 43.478 0.00 0.00 0.00 2.87
2019 2098 3.374042 TGGAGGAAGACTGAGGTAGAG 57.626 52.381 0.00 0.00 0.00 2.43
2020 2099 2.024846 TGGAGGAAGACTGAGGTAGAGG 60.025 54.545 0.00 0.00 0.00 3.69
2028 2107 5.199982 AGACTGAGGTAGAGGAGATTGAA 57.800 43.478 0.00 0.00 0.00 2.69
2034 2113 8.482128 ACTGAGGTAGAGGAGATTGAAATTAAG 58.518 37.037 0.00 0.00 0.00 1.85
2035 2114 8.609617 TGAGGTAGAGGAGATTGAAATTAAGA 57.390 34.615 0.00 0.00 0.00 2.10
2037 2116 8.616799 AGGTAGAGGAGATTGAAATTAAGACT 57.383 34.615 0.00 0.00 0.00 3.24
2040 2119 6.118852 AGAGGAGATTGAAATTAAGACTGCC 58.881 40.000 0.00 0.00 0.00 4.85
2042 2121 4.636206 GGAGATTGAAATTAAGACTGCCGT 59.364 41.667 0.00 0.00 0.00 5.68
2048 2127 5.064558 TGAAATTAAGACTGCCGTGGTTAA 58.935 37.500 0.00 0.00 0.00 2.01
2049 2128 5.049267 TGAAATTAAGACTGCCGTGGTTAAC 60.049 40.000 0.00 0.00 0.00 2.01
2052 2131 2.561478 AGACTGCCGTGGTTAACATT 57.439 45.000 8.10 0.00 0.00 2.71
2066 2145 6.366061 GTGGTTAACATTCCTGAGAATTTTGC 59.634 38.462 8.10 0.00 40.89 3.68
2068 2147 7.154656 GGTTAACATTCCTGAGAATTTTGCTT 58.845 34.615 8.10 0.00 40.89 3.91
2070 2149 8.490355 GTTAACATTCCTGAGAATTTTGCTTTG 58.510 33.333 0.00 0.00 40.89 2.77
2073 2152 5.867903 TTCCTGAGAATTTTGCTTTGGAA 57.132 34.783 0.00 0.00 0.00 3.53
2078 2157 4.281688 TGAGAATTTTGCTTTGGAAGAGGG 59.718 41.667 0.00 0.00 0.00 4.30
2079 2158 4.226384 AGAATTTTGCTTTGGAAGAGGGT 58.774 39.130 0.00 0.00 0.00 4.34
2080 2159 4.655649 AGAATTTTGCTTTGGAAGAGGGTT 59.344 37.500 0.00 0.00 0.00 4.11
2082 2161 3.817709 TTTGCTTTGGAAGAGGGTTTG 57.182 42.857 0.00 0.00 0.00 2.93
2091 2170 3.593328 TGGAAGAGGGTTTGGATGAGATT 59.407 43.478 0.00 0.00 0.00 2.40
2098 2177 3.309121 GGGTTTGGATGAGATTCAAGGGA 60.309 47.826 0.00 0.00 0.00 4.20
2106 2185 3.370104 TGAGATTCAAGGGAGAGGAGAC 58.630 50.000 0.00 0.00 0.00 3.36
2114 2193 1.008206 AGGGAGAGGAGACTTGCAGAT 59.992 52.381 0.00 0.00 44.43 2.90
2115 2194 1.836802 GGGAGAGGAGACTTGCAGATT 59.163 52.381 0.00 0.00 44.43 2.40
2116 2195 2.419851 GGGAGAGGAGACTTGCAGATTG 60.420 54.545 0.00 0.00 44.43 2.67
2124 2203 2.158475 AGACTTGCAGATTGGTGGGAAA 60.158 45.455 0.00 0.00 0.00 3.13
2127 2206 2.205022 TGCAGATTGGTGGGAAAGAG 57.795 50.000 0.00 0.00 0.00 2.85
2130 2209 3.157087 GCAGATTGGTGGGAAAGAGAAA 58.843 45.455 0.00 0.00 0.00 2.52
2136 2215 2.108250 TGGTGGGAAAGAGAAAAGAGGG 59.892 50.000 0.00 0.00 0.00 4.30
2145 2224 6.455690 AAAGAGAAAAGAGGGGATAACTGT 57.544 37.500 0.00 0.00 0.00 3.55
2155 2235 3.053619 AGGGGATAACTGTTTGGATGGTC 60.054 47.826 0.00 0.00 0.00 4.02
2159 2239 4.636206 GGATAACTGTTTGGATGGTCTGTC 59.364 45.833 0.00 0.00 0.00 3.51
2175 2255 1.228552 GTCTGAAAGCCTGGCCCAA 60.229 57.895 16.57 0.00 0.00 4.12
2206 2286 4.033251 CTGGGGAGGGGGTGGGTA 62.033 72.222 0.00 0.00 0.00 3.69
2222 2302 2.693267 GGTAGTGGCCCAGTAAAGAG 57.307 55.000 0.00 0.00 0.00 2.85
2227 2307 1.628846 GTGGCCCAGTAAAGAGAGGAA 59.371 52.381 0.00 0.00 0.00 3.36
2229 2309 1.909986 GGCCCAGTAAAGAGAGGAAGT 59.090 52.381 0.00 0.00 0.00 3.01
2232 2312 3.173965 CCCAGTAAAGAGAGGAAGTGGA 58.826 50.000 0.00 0.00 34.88 4.02
2238 2318 2.990740 AGAGAGGAAGTGGAGTGACT 57.009 50.000 0.00 0.00 0.00 3.41
2247 2327 9.747898 AGAGGAAGTGGAGTGACTATATATAAG 57.252 37.037 0.00 0.00 0.00 1.73
2250 2330 7.363968 GGAAGTGGAGTGACTATATATAAGGGC 60.364 44.444 0.00 0.00 0.00 5.19
2251 2331 6.562228 AGTGGAGTGACTATATATAAGGGCA 58.438 40.000 0.00 0.00 0.00 5.36
2252 2332 7.192628 AGTGGAGTGACTATATATAAGGGCAT 58.807 38.462 0.00 0.00 0.00 4.40
2253 2333 7.343316 AGTGGAGTGACTATATATAAGGGCATC 59.657 40.741 0.00 0.00 0.00 3.91
2254 2334 7.343316 GTGGAGTGACTATATATAAGGGCATCT 59.657 40.741 0.00 0.00 0.00 2.90
2255 2335 7.561722 TGGAGTGACTATATATAAGGGCATCTC 59.438 40.741 0.00 2.72 0.00 2.75
2256 2336 7.014808 GGAGTGACTATATATAAGGGCATCTCC 59.985 44.444 16.80 16.80 0.00 3.71
2257 2337 7.422512 AGTGACTATATATAAGGGCATCTCCA 58.577 38.462 0.00 0.00 36.21 3.86
2258 2338 7.563188 AGTGACTATATATAAGGGCATCTCCAG 59.437 40.741 0.00 0.00 36.21 3.86
2259 2339 6.325028 TGACTATATATAAGGGCATCTCCAGC 59.675 42.308 0.00 0.00 36.21 4.85
2279 2359 3.330720 CGCCCCCAGGAAGGTCTT 61.331 66.667 0.00 0.00 34.66 3.01
2280 2360 2.677848 GCCCCCAGGAAGGTCTTC 59.322 66.667 2.29 2.29 38.80 2.87
2288 2368 3.388841 GAAGGTCTTCCCAGGCGA 58.611 61.111 0.00 0.00 34.66 5.54
2289 2369 1.908483 GAAGGTCTTCCCAGGCGAT 59.092 57.895 0.00 0.00 34.66 4.58
2290 2370 0.253327 GAAGGTCTTCCCAGGCGATT 59.747 55.000 0.00 0.00 34.66 3.34
2291 2371 0.698818 AAGGTCTTCCCAGGCGATTT 59.301 50.000 0.00 0.00 34.66 2.17
2292 2372 0.698818 AGGTCTTCCCAGGCGATTTT 59.301 50.000 0.00 0.00 34.66 1.82
2293 2373 1.075536 AGGTCTTCCCAGGCGATTTTT 59.924 47.619 0.00 0.00 34.66 1.94
2326 2406 3.656045 AAAAACGGCCCAGTCGCG 61.656 61.111 0.00 0.00 32.11 5.87
2344 2424 3.420482 CCCCCAGGAGCCCGATTT 61.420 66.667 0.00 0.00 33.47 2.17
2345 2425 2.683475 CCCCAGGAGCCCGATTTT 59.317 61.111 0.00 0.00 0.00 1.82
2346 2426 1.453928 CCCCAGGAGCCCGATTTTC 60.454 63.158 0.00 0.00 0.00 2.29
2347 2427 1.819632 CCCAGGAGCCCGATTTTCG 60.820 63.158 0.00 0.00 40.07 3.46
2348 2428 2.472909 CCAGGAGCCCGATTTTCGC 61.473 63.158 0.00 0.00 38.82 4.70
2349 2429 2.124695 AGGAGCCCGATTTTCGCC 60.125 61.111 0.00 0.00 38.82 5.54
2350 2430 3.573491 GGAGCCCGATTTTCGCCG 61.573 66.667 0.00 0.00 38.82 6.46
2351 2431 3.573491 GAGCCCGATTTTCGCCGG 61.573 66.667 0.00 0.00 44.94 6.13
2354 2434 3.131478 CCCGATTTTCGCCGGCTT 61.131 61.111 26.68 3.40 44.07 4.35
2355 2435 2.100216 CCGATTTTCGCCGGCTTG 59.900 61.111 26.68 10.37 38.82 4.01
2356 2436 2.100216 CGATTTTCGCCGGCTTGG 59.900 61.111 26.68 9.50 42.50 3.61
2357 2437 2.489751 GATTTTCGCCGGCTTGGG 59.510 61.111 26.68 9.07 38.63 4.12
2368 2448 1.005748 GGCTTGGGCTGAAAACAGC 60.006 57.895 12.90 12.90 46.78 4.40
2375 2455 4.741781 CTGAAAACAGCGCCGGCG 62.742 66.667 43.13 43.13 46.35 6.46
2435 2515 3.737172 CCGGGGCGAGCTGTTTTG 61.737 66.667 0.00 0.00 0.00 2.44
2436 2516 3.737172 CGGGGCGAGCTGTTTTGG 61.737 66.667 0.00 0.00 0.00 3.28
2437 2517 4.056125 GGGGCGAGCTGTTTTGGC 62.056 66.667 0.00 0.00 0.00 4.52
2438 2518 4.404654 GGGCGAGCTGTTTTGGCG 62.405 66.667 0.00 0.00 34.52 5.69
2442 2522 2.637025 GAGCTGTTTTGGCGCGAA 59.363 55.556 12.10 0.00 34.52 4.70
2443 2523 1.008995 GAGCTGTTTTGGCGCGAAA 60.009 52.632 13.91 13.91 34.52 3.46
2444 2524 0.593773 GAGCTGTTTTGGCGCGAAAA 60.594 50.000 23.88 23.88 34.52 2.29
2445 2525 0.179124 AGCTGTTTTGGCGCGAAAAA 60.179 45.000 28.17 20.66 34.52 1.94
2446 2526 0.229500 GCTGTTTTGGCGCGAAAAAG 59.771 50.000 28.17 24.82 0.00 2.27
2447 2527 1.833860 CTGTTTTGGCGCGAAAAAGA 58.166 45.000 28.17 20.17 0.00 2.52
2448 2528 1.516864 CTGTTTTGGCGCGAAAAAGAC 59.483 47.619 28.17 18.78 0.00 3.01
2449 2529 0.496851 GTTTTGGCGCGAAAAAGACG 59.503 50.000 28.17 0.00 0.00 4.18
2455 2535 4.753877 GCGAAAAAGACGCGGGCC 62.754 66.667 12.47 0.00 46.05 5.80
2456 2536 3.350612 CGAAAAAGACGCGGGCCA 61.351 61.111 12.47 0.00 0.00 5.36
2457 2537 2.561373 GAAAAAGACGCGGGCCAG 59.439 61.111 12.47 0.00 0.00 4.85
2458 2538 3.610791 GAAAAAGACGCGGGCCAGC 62.611 63.158 18.93 18.93 0.00 4.85
2485 2565 4.117661 GACTCGGCGCCTCGTCTT 62.118 66.667 27.61 8.31 0.00 3.01
2486 2566 4.117661 ACTCGGCGCCTCGTCTTC 62.118 66.667 26.68 0.00 0.00 2.87
2487 2567 4.856607 CTCGGCGCCTCGTCTTCC 62.857 72.222 26.68 0.00 0.00 3.46
2492 2572 3.702048 CGCCTCGTCTTCCCCCAA 61.702 66.667 0.00 0.00 0.00 4.12
2493 2573 2.998949 GCCTCGTCTTCCCCCAAT 59.001 61.111 0.00 0.00 0.00 3.16
2494 2574 1.452108 GCCTCGTCTTCCCCCAATG 60.452 63.158 0.00 0.00 0.00 2.82
2495 2575 1.224592 CCTCGTCTTCCCCCAATGG 59.775 63.158 0.00 0.00 0.00 3.16
2496 2576 1.452108 CTCGTCTTCCCCCAATGGC 60.452 63.158 0.00 0.00 0.00 4.40
2497 2577 2.440247 CGTCTTCCCCCAATGGCC 60.440 66.667 0.00 0.00 0.00 5.36
2498 2578 2.983879 CGTCTTCCCCCAATGGCCT 61.984 63.158 3.32 0.00 0.00 5.19
2499 2579 1.076705 GTCTTCCCCCAATGGCCTC 60.077 63.158 3.32 0.00 0.00 4.70
2500 2580 2.124151 CTTCCCCCAATGGCCTCG 60.124 66.667 3.32 0.00 0.00 4.63
2501 2581 3.721370 CTTCCCCCAATGGCCTCGG 62.721 68.421 3.32 0.79 0.00 4.63
2503 2583 4.060667 CCCCCAATGGCCTCGGTT 62.061 66.667 3.32 0.00 0.00 4.44
2504 2584 2.440247 CCCCAATGGCCTCGGTTC 60.440 66.667 3.32 0.00 0.00 3.62
2505 2585 2.440247 CCCAATGGCCTCGGTTCC 60.440 66.667 3.32 0.00 0.00 3.62
2506 2586 2.440247 CCAATGGCCTCGGTTCCC 60.440 66.667 3.32 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.805345 CTTGGTGCTTCTCTGCTTCTG 59.195 52.381 0.00 0.00 0.00 3.02
23 24 1.074405 TGCCTGATTCTTGGTGCTTCT 59.926 47.619 0.00 0.00 0.00 2.85
25 26 1.999648 TTGCCTGATTCTTGGTGCTT 58.000 45.000 0.00 0.00 0.00 3.91
33 34 2.108952 AGTCACCCTTTTGCCTGATTCT 59.891 45.455 0.00 0.00 0.00 2.40
72 73 0.677731 TCCAGCGAGATTTGCCCTTG 60.678 55.000 0.00 0.00 0.00 3.61
75 76 1.967319 TATTCCAGCGAGATTTGCCC 58.033 50.000 0.00 0.00 0.00 5.36
160 161 4.215185 TGTGATTCGCTTGCAATCTACAAA 59.785 37.500 0.00 0.00 32.32 2.83
162 163 3.333804 TGTGATTCGCTTGCAATCTACA 58.666 40.909 0.00 0.00 32.32 2.74
163 164 4.337763 CTTGTGATTCGCTTGCAATCTAC 58.662 43.478 0.00 0.00 32.32 2.59
164 165 3.374988 CCTTGTGATTCGCTTGCAATCTA 59.625 43.478 0.00 0.00 32.32 1.98
165 166 2.163010 CCTTGTGATTCGCTTGCAATCT 59.837 45.455 0.00 0.00 32.32 2.40
166 167 2.162208 TCCTTGTGATTCGCTTGCAATC 59.838 45.455 0.00 0.00 0.00 2.67
167 168 2.161855 TCCTTGTGATTCGCTTGCAAT 58.838 42.857 0.00 0.00 0.00 3.56
168 169 1.603456 TCCTTGTGATTCGCTTGCAA 58.397 45.000 0.00 0.00 0.00 4.08
169 170 1.825090 ATCCTTGTGATTCGCTTGCA 58.175 45.000 0.00 0.00 0.00 4.08
170 171 2.927553 AATCCTTGTGATTCGCTTGC 57.072 45.000 0.00 0.00 39.56 4.01
177 178 1.812571 GTGCGTGGAATCCTTGTGATT 59.187 47.619 0.00 0.00 46.46 2.57
178 179 1.453155 GTGCGTGGAATCCTTGTGAT 58.547 50.000 0.00 0.00 34.22 3.06
179 180 0.948623 CGTGCGTGGAATCCTTGTGA 60.949 55.000 0.00 0.00 0.00 3.58
180 181 1.497278 CGTGCGTGGAATCCTTGTG 59.503 57.895 0.00 0.00 0.00 3.33
181 182 2.325082 GCGTGCGTGGAATCCTTGT 61.325 57.895 0.00 0.00 0.00 3.16
182 183 2.244436 CTGCGTGCGTGGAATCCTTG 62.244 60.000 0.00 0.00 0.00 3.61
183 184 2.031919 TGCGTGCGTGGAATCCTT 59.968 55.556 0.00 0.00 0.00 3.36
184 185 2.244117 ATCTGCGTGCGTGGAATCCT 62.244 55.000 0.00 0.00 0.00 3.24
185 186 1.815421 ATCTGCGTGCGTGGAATCC 60.815 57.895 0.00 0.00 0.00 3.01
186 187 1.349627 CATCTGCGTGCGTGGAATC 59.650 57.895 0.00 0.00 0.00 2.52
187 188 2.753966 GCATCTGCGTGCGTGGAAT 61.754 57.895 0.00 0.00 35.10 3.01
188 189 3.422303 GCATCTGCGTGCGTGGAA 61.422 61.111 0.00 0.00 35.10 3.53
194 195 1.094073 AGATCCTTGCATCTGCGTGC 61.094 55.000 0.00 2.00 45.83 5.34
195 196 2.229675 TAGATCCTTGCATCTGCGTG 57.770 50.000 0.00 0.00 45.83 5.34
196 197 2.988010 TTAGATCCTTGCATCTGCGT 57.012 45.000 0.00 0.00 45.83 5.24
197 198 4.825546 AATTTAGATCCTTGCATCTGCG 57.174 40.909 0.00 0.00 45.83 5.18
198 199 7.502120 TCTTAATTTAGATCCTTGCATCTGC 57.498 36.000 0.00 0.00 42.50 4.26
199 200 8.074972 GCTTCTTAATTTAGATCCTTGCATCTG 58.925 37.037 0.00 0.00 34.75 2.90
200 201 7.230309 GGCTTCTTAATTTAGATCCTTGCATCT 59.770 37.037 0.00 0.00 36.97 2.90
201 202 7.013655 TGGCTTCTTAATTTAGATCCTTGCATC 59.986 37.037 11.89 0.00 0.00 3.91
202 203 6.835488 TGGCTTCTTAATTTAGATCCTTGCAT 59.165 34.615 11.89 0.00 0.00 3.96
203 204 6.186957 TGGCTTCTTAATTTAGATCCTTGCA 58.813 36.000 11.89 0.00 0.00 4.08
204 205 6.699575 TGGCTTCTTAATTTAGATCCTTGC 57.300 37.500 11.89 5.63 0.00 4.01
205 206 7.503566 TGGATGGCTTCTTAATTTAGATCCTTG 59.496 37.037 10.72 0.00 0.00 3.61
206 207 7.503902 GTGGATGGCTTCTTAATTTAGATCCTT 59.496 37.037 10.72 6.87 0.00 3.36
210 211 6.774656 CCTGTGGATGGCTTCTTAATTTAGAT 59.225 38.462 0.00 0.00 0.00 1.98
213 214 5.200483 CCCTGTGGATGGCTTCTTAATTTA 58.800 41.667 0.07 0.00 0.00 1.40
220 221 1.898863 ATACCCTGTGGATGGCTTCT 58.101 50.000 0.07 0.00 34.81 2.85
225 226 4.821805 GTGTTGATAATACCCTGTGGATGG 59.178 45.833 0.00 0.00 34.81 3.51
230 231 4.876107 GTCCAGTGTTGATAATACCCTGTG 59.124 45.833 0.00 0.00 0.00 3.66
236 237 4.501071 ACGGTGTCCAGTGTTGATAATAC 58.499 43.478 0.00 0.00 0.00 1.89
242 243 0.387929 GAGACGGTGTCCAGTGTTGA 59.612 55.000 0.00 0.00 32.18 3.18
243 244 0.939577 CGAGACGGTGTCCAGTGTTG 60.940 60.000 0.00 0.00 32.18 3.33
256 257 1.920574 CAGCATTACACCTTCGAGACG 59.079 52.381 0.00 0.00 0.00 4.18
266 267 3.723835 CGCTTTAACCGTCAGCATTACAC 60.724 47.826 0.00 0.00 32.71 2.90
272 273 2.322081 GGCGCTTTAACCGTCAGCA 61.322 57.895 7.64 0.00 32.71 4.41
274 275 0.669318 TGAGGCGCTTTAACCGTCAG 60.669 55.000 7.64 0.00 31.73 3.51
279 280 3.908213 TGAATTTTGAGGCGCTTTAACC 58.092 40.909 7.64 0.00 0.00 2.85
281 282 5.446143 TTCTGAATTTTGAGGCGCTTTAA 57.554 34.783 7.64 0.00 0.00 1.52
294 295 8.478066 GGTAAAATCCTGCCTAATTCTGAATTT 58.522 33.333 19.68 5.79 32.38 1.82
363 364 1.415374 AATCGAAACTGGTGTCGTCG 58.585 50.000 12.20 2.64 38.41 5.12
378 379 6.247165 CACTTCAATTTCGTCAGCTAAAATCG 59.753 38.462 0.00 0.00 0.00 3.34
400 401 2.629617 CCAAGAAATGAAACCTGCCACT 59.370 45.455 0.00 0.00 0.00 4.00
428 429 3.399181 GACAGGGATGGTGGGCGA 61.399 66.667 0.00 0.00 0.00 5.54
435 441 0.179134 GACGACGAAGACAGGGATGG 60.179 60.000 0.00 0.00 0.00 3.51
440 446 0.179220 GAGACGACGACGAAGACAGG 60.179 60.000 15.32 0.00 42.66 4.00
449 455 4.094212 GTGGTTGTATTAGAGACGACGAC 58.906 47.826 0.00 0.00 34.21 4.34
452 458 3.850273 CGTGTGGTTGTATTAGAGACGAC 59.150 47.826 0.00 0.00 0.00 4.34
455 461 3.581755 TGCGTGTGGTTGTATTAGAGAC 58.418 45.455 0.00 0.00 0.00 3.36
456 462 3.945981 TGCGTGTGGTTGTATTAGAGA 57.054 42.857 0.00 0.00 0.00 3.10
457 463 4.242475 TCTTGCGTGTGGTTGTATTAGAG 58.758 43.478 0.00 0.00 0.00 2.43
458 464 4.242475 CTCTTGCGTGTGGTTGTATTAGA 58.758 43.478 0.00 0.00 0.00 2.10
459 465 3.181520 GCTCTTGCGTGTGGTTGTATTAG 60.182 47.826 0.00 0.00 0.00 1.73
462 468 1.156736 GCTCTTGCGTGTGGTTGTAT 58.843 50.000 0.00 0.00 0.00 2.29
492 498 2.975410 TCAAGCATGTTTTCTGCGAG 57.025 45.000 0.00 0.00 44.38 5.03
496 502 3.708890 TGCAGTTCAAGCATGTTTTCTG 58.291 40.909 11.65 11.65 37.02 3.02
516 522 8.529102 CGTTGCTATCATGAAATTCAGAAAATG 58.471 33.333 0.00 0.00 0.00 2.32
518 524 7.815641 TCGTTGCTATCATGAAATTCAGAAAA 58.184 30.769 0.00 0.00 0.00 2.29
525 531 7.099266 TCCATTTCGTTGCTATCATGAAATT 57.901 32.000 0.00 0.00 36.43 1.82
546 552 8.704849 ATTAACAATTCCATCGGAAATATCCA 57.295 30.769 0.00 0.00 45.41 3.41
550 556 8.561212 CCGTTATTAACAATTCCATCGGAAATA 58.439 33.333 7.31 0.00 45.41 1.40
551 557 7.422399 CCGTTATTAACAATTCCATCGGAAAT 58.578 34.615 7.31 0.00 45.41 2.17
552 558 6.183360 CCCGTTATTAACAATTCCATCGGAAA 60.183 38.462 7.31 0.00 45.41 3.13
553 559 5.297278 CCCGTTATTAACAATTCCATCGGAA 59.703 40.000 7.31 0.00 46.39 4.30
554 560 4.817464 CCCGTTATTAACAATTCCATCGGA 59.183 41.667 7.31 0.00 36.97 4.55
555 561 4.577283 ACCCGTTATTAACAATTCCATCGG 59.423 41.667 7.31 0.00 35.02 4.18
556 562 5.277634 GGACCCGTTATTAACAATTCCATCG 60.278 44.000 7.31 0.00 0.00 3.84
557 563 5.277634 CGGACCCGTTATTAACAATTCCATC 60.278 44.000 7.31 0.00 34.35 3.51
558 564 4.577283 CGGACCCGTTATTAACAATTCCAT 59.423 41.667 7.31 0.00 34.35 3.41
559 565 3.940221 CGGACCCGTTATTAACAATTCCA 59.060 43.478 7.31 0.00 34.35 3.53
560 566 4.034394 GTCGGACCCGTTATTAACAATTCC 59.966 45.833 8.42 7.15 40.74 3.01
561 567 4.630940 TGTCGGACCCGTTATTAACAATTC 59.369 41.667 8.42 0.00 40.74 2.17
562 568 4.392754 GTGTCGGACCCGTTATTAACAATT 59.607 41.667 8.42 0.00 40.74 2.32
563 569 3.934579 GTGTCGGACCCGTTATTAACAAT 59.065 43.478 8.42 0.00 40.74 2.71
564 570 3.324993 GTGTCGGACCCGTTATTAACAA 58.675 45.455 8.42 0.00 40.74 2.83
565 571 2.670789 CGTGTCGGACCCGTTATTAACA 60.671 50.000 8.42 1.56 40.74 2.41
566 572 1.919918 CGTGTCGGACCCGTTATTAAC 59.080 52.381 8.42 0.00 40.74 2.01
567 573 1.543802 ACGTGTCGGACCCGTTATTAA 59.456 47.619 12.82 0.00 40.74 1.40
568 574 1.132262 GACGTGTCGGACCCGTTATTA 59.868 52.381 19.06 0.00 40.74 0.98
569 575 0.109132 GACGTGTCGGACCCGTTATT 60.109 55.000 19.06 0.00 40.74 1.40
570 576 0.962356 AGACGTGTCGGACCCGTTAT 60.962 55.000 19.06 9.14 40.74 1.89
571 577 1.577328 GAGACGTGTCGGACCCGTTA 61.577 60.000 19.06 0.00 40.74 3.18
572 578 2.908940 AGACGTGTCGGACCCGTT 60.909 61.111 19.06 7.41 40.74 4.44
668 674 3.550431 CCGTGATGGAGCCGGGAT 61.550 66.667 2.18 0.00 42.00 3.85
687 693 2.887568 GACGCCCAGCACGATCTG 60.888 66.667 0.00 0.00 0.00 2.90
708 714 2.583593 GAGATGCACCGTCTCCGC 60.584 66.667 4.71 0.00 39.75 5.54
769 775 4.421479 CAGGCGCGAGAACCGTCT 62.421 66.667 12.10 0.00 41.97 4.18
868 874 3.518068 CGGCCGCAATTCCTTCCC 61.518 66.667 14.67 0.00 0.00 3.97
890 896 4.489771 CCAGCCGCGATTCCCCTT 62.490 66.667 8.23 0.00 0.00 3.95
943 949 2.893637 CGGTAGGTGAGAGATTTGGTG 58.106 52.381 0.00 0.00 0.00 4.17
958 985 1.525077 AGAGAGAGGAGCGCGGTAG 60.525 63.158 12.41 0.00 0.00 3.18
963 990 2.412937 GAGCAGAGAGAGGAGCGC 59.587 66.667 0.00 0.00 0.00 5.92
970 997 1.452108 TCGATGGCGAGCAGAGAGA 60.452 57.895 0.00 0.00 42.51 3.10
984 1011 4.467084 ATGGTTGCCGCGGTCGAT 62.467 61.111 28.70 16.53 38.10 3.59
1085 1157 0.602638 CTCCCGCTTGCTTGTGTACA 60.603 55.000 0.00 0.00 0.00 2.90
1098 1170 1.373497 CTCCGCATACATCTCCCGC 60.373 63.158 0.00 0.00 0.00 6.13
1099 1171 1.290324 CCTCCGCATACATCTCCCG 59.710 63.158 0.00 0.00 0.00 5.14
1101 1174 1.373497 CGCCTCCGCATACATCTCC 60.373 63.158 0.00 0.00 34.03 3.71
1176 1249 2.437359 AGTGGATGCTTGCGCCTC 60.437 61.111 4.18 0.00 34.43 4.70
1204 1277 1.453235 CCTGATCCATCGCCCACAT 59.547 57.895 0.00 0.00 0.00 3.21
1361 1435 1.153188 ATCACAATCGGCGCCATGA 60.153 52.632 28.98 20.35 0.00 3.07
1456 1530 1.810794 GCGAGGAGTCGGAGTAGATGA 60.811 57.143 0.00 0.00 46.91 2.92
1461 1535 0.395311 AATGGCGAGGAGTCGGAGTA 60.395 55.000 0.00 0.00 46.91 2.59
1501 1575 1.149174 AGGCATCGATTCCGGCATT 59.851 52.632 8.50 0.00 36.24 3.56
1502 1576 1.598962 CAGGCATCGATTCCGGCAT 60.599 57.895 8.50 0.00 36.24 4.40
1503 1577 2.203056 CAGGCATCGATTCCGGCA 60.203 61.111 8.50 0.00 36.24 5.69
1504 1578 1.502163 CTTCAGGCATCGATTCCGGC 61.502 60.000 9.23 4.62 36.24 6.13
1505 1579 0.882042 CCTTCAGGCATCGATTCCGG 60.882 60.000 8.50 8.17 36.24 5.14
1506 1580 2.609825 CCTTCAGGCATCGATTCCG 58.390 57.895 8.50 4.26 37.07 4.30
1554 1628 4.202305 GCTACCTGAATCTTCACTAGCCAT 60.202 45.833 10.92 0.00 34.88 4.40
1588 1662 6.298441 TCATACCTGAGTCAACATCAATCA 57.702 37.500 0.00 0.00 0.00 2.57
1590 1664 8.585471 ATTTTCATACCTGAGTCAACATCAAT 57.415 30.769 0.00 0.00 31.68 2.57
1601 1675 5.687285 GCCGCAATTAATTTTCATACCTGAG 59.313 40.000 0.00 0.00 31.68 3.35
1614 1688 6.909550 TTTATATGGGAAGCCGCAATTAAT 57.090 33.333 0.00 0.00 38.77 1.40
1615 1689 6.719370 AGATTTATATGGGAAGCCGCAATTAA 59.281 34.615 0.00 0.00 38.77 1.40
1623 1697 5.505181 TCAGGAGATTTATATGGGAAGCC 57.495 43.478 0.00 0.00 0.00 4.35
1645 1719 8.303156 CACTCGATTTCCTCTCTGTATTATCAT 58.697 37.037 0.00 0.00 0.00 2.45
1656 1730 2.611225 ATGGCACTCGATTTCCTCTC 57.389 50.000 0.00 0.00 0.00 3.20
1659 1733 2.787473 TCAATGGCACTCGATTTCCT 57.213 45.000 0.00 0.00 0.00 3.36
1734 1812 4.248859 TCAGAAGCAAGCTCTGAACATAC 58.751 43.478 16.41 0.00 37.54 2.39
1763 1841 5.070180 TCAGCAAATCTATCCTCTTCCTCTG 59.930 44.000 0.00 0.00 0.00 3.35
1772 1850 8.897752 GTTTATCAGTTTCAGCAAATCTATCCT 58.102 33.333 0.00 0.00 0.00 3.24
1780 1858 8.846943 TCTATCAGTTTATCAGTTTCAGCAAA 57.153 30.769 0.00 0.00 0.00 3.68
1781 1859 9.453572 AATCTATCAGTTTATCAGTTTCAGCAA 57.546 29.630 0.00 0.00 0.00 3.91
1790 1868 9.258826 CTTCCTGACAATCTATCAGTTTATCAG 57.741 37.037 1.65 0.00 41.78 2.90
1802 1880 7.265599 TGAATAAACCCTTCCTGACAATCTA 57.734 36.000 0.00 0.00 0.00 1.98
1823 1901 3.514706 CCAATTGGGTGATTCCACATGAA 59.485 43.478 17.36 0.00 44.93 2.57
1839 1917 3.696045 TGTGTGGTAATCTCCCCAATTG 58.304 45.455 0.00 0.00 31.17 2.32
1859 1937 9.897744 TTAACAATGCTAGATCAACTCTTTTTG 57.102 29.630 0.00 0.00 35.28 2.44
1902 1981 7.984422 TCTAACATAATCCACAATAGCATGG 57.016 36.000 0.00 0.00 37.32 3.66
1905 1984 9.066892 GGAAATCTAACATAATCCACAATAGCA 57.933 33.333 0.00 0.00 0.00 3.49
1942 2021 9.668497 TTCATCCTCATCATTCTCAATATCATC 57.332 33.333 0.00 0.00 0.00 2.92
1966 2045 5.768164 TCCCCTTGTCACTTTTAACTGATTC 59.232 40.000 0.00 0.00 0.00 2.52
1968 2047 5.319043 TCCCCTTGTCACTTTTAACTGAT 57.681 39.130 0.00 0.00 0.00 2.90
1975 2054 5.491323 TTGTTTTTCCCCTTGTCACTTTT 57.509 34.783 0.00 0.00 0.00 2.27
1985 2064 3.628832 TCCTCCATTTGTTTTTCCCCT 57.371 42.857 0.00 0.00 0.00 4.79
1986 2065 3.901222 TCTTCCTCCATTTGTTTTTCCCC 59.099 43.478 0.00 0.00 0.00 4.81
1989 2068 6.391227 TCAGTCTTCCTCCATTTGTTTTTC 57.609 37.500 0.00 0.00 0.00 2.29
1997 2076 4.285863 CTCTACCTCAGTCTTCCTCCATT 58.714 47.826 0.00 0.00 0.00 3.16
2008 2087 6.882768 AATTTCAATCTCCTCTACCTCAGT 57.117 37.500 0.00 0.00 0.00 3.41
2019 2098 4.636206 ACGGCAGTCTTAATTTCAATCTCC 59.364 41.667 0.00 0.00 0.00 3.71
2020 2099 5.447818 CCACGGCAGTCTTAATTTCAATCTC 60.448 44.000 0.00 0.00 0.00 2.75
2028 2107 4.391155 TGTTAACCACGGCAGTCTTAATT 58.609 39.130 2.48 0.00 0.00 1.40
2034 2113 1.467342 GGAATGTTAACCACGGCAGTC 59.533 52.381 2.48 0.00 0.00 3.51
2035 2114 1.073284 AGGAATGTTAACCACGGCAGT 59.927 47.619 2.48 0.00 0.00 4.40
2037 2116 1.072489 TCAGGAATGTTAACCACGGCA 59.928 47.619 2.48 0.00 0.00 5.69
2040 2119 5.880054 AATTCTCAGGAATGTTAACCACG 57.120 39.130 2.48 0.00 40.86 4.94
2042 2121 6.267471 AGCAAAATTCTCAGGAATGTTAACCA 59.733 34.615 2.48 0.00 40.86 3.67
2048 2127 5.305128 TCCAAAGCAAAATTCTCAGGAATGT 59.695 36.000 0.00 0.00 40.86 2.71
2049 2128 5.786311 TCCAAAGCAAAATTCTCAGGAATG 58.214 37.500 0.00 0.00 40.86 2.67
2052 2131 5.139727 TCTTCCAAAGCAAAATTCTCAGGA 58.860 37.500 0.00 0.00 0.00 3.86
2066 2145 3.760684 CTCATCCAAACCCTCTTCCAAAG 59.239 47.826 0.00 0.00 0.00 2.77
2068 2147 2.986019 TCTCATCCAAACCCTCTTCCAA 59.014 45.455 0.00 0.00 0.00 3.53
2070 2149 3.941704 ATCTCATCCAAACCCTCTTCC 57.058 47.619 0.00 0.00 0.00 3.46
2073 2152 4.324874 CCTTGAATCTCATCCAAACCCTCT 60.325 45.833 0.00 0.00 0.00 3.69
2078 2157 4.848357 TCTCCCTTGAATCTCATCCAAAC 58.152 43.478 0.00 0.00 0.00 2.93
2079 2158 4.080129 CCTCTCCCTTGAATCTCATCCAAA 60.080 45.833 0.00 0.00 0.00 3.28
2080 2159 3.457380 CCTCTCCCTTGAATCTCATCCAA 59.543 47.826 0.00 0.00 0.00 3.53
2082 2161 3.312890 TCCTCTCCCTTGAATCTCATCC 58.687 50.000 0.00 0.00 0.00 3.51
2091 2170 1.270907 GCAAGTCTCCTCTCCCTTGA 58.729 55.000 0.00 0.00 37.14 3.02
2098 2177 2.027377 CACCAATCTGCAAGTCTCCTCT 60.027 50.000 0.00 0.00 33.76 3.69
2106 2185 2.490903 CTCTTTCCCACCAATCTGCAAG 59.509 50.000 0.00 0.00 0.00 4.01
2114 2193 3.436470 CCCTCTTTTCTCTTTCCCACCAA 60.436 47.826 0.00 0.00 0.00 3.67
2115 2194 2.108250 CCCTCTTTTCTCTTTCCCACCA 59.892 50.000 0.00 0.00 0.00 4.17
2116 2195 2.555448 CCCCTCTTTTCTCTTTCCCACC 60.555 54.545 0.00 0.00 0.00 4.61
2124 2203 6.241645 CAAACAGTTATCCCCTCTTTTCTCT 58.758 40.000 0.00 0.00 0.00 3.10
2127 2206 5.321927 TCCAAACAGTTATCCCCTCTTTTC 58.678 41.667 0.00 0.00 0.00 2.29
2130 2209 4.325344 CCATCCAAACAGTTATCCCCTCTT 60.325 45.833 0.00 0.00 0.00 2.85
2136 2215 4.589908 ACAGACCATCCAAACAGTTATCC 58.410 43.478 0.00 0.00 0.00 2.59
2145 2224 3.149196 GCTTTCAGACAGACCATCCAAA 58.851 45.455 0.00 0.00 0.00 3.28
2155 2235 1.676967 GGGCCAGGCTTTCAGACAG 60.677 63.158 12.43 0.00 0.00 3.51
2159 2239 2.643232 GCTTGGGCCAGGCTTTCAG 61.643 63.158 31.14 13.82 33.60 3.02
2203 2283 2.168728 CTCTCTTTACTGGGCCACTACC 59.831 54.545 0.00 0.00 0.00 3.18
2204 2284 2.168728 CCTCTCTTTACTGGGCCACTAC 59.831 54.545 0.00 0.00 0.00 2.73
2206 2286 1.203313 TCCTCTCTTTACTGGGCCACT 60.203 52.381 0.00 0.00 0.00 4.00
2216 2296 4.742012 AGTCACTCCACTTCCTCTCTTTA 58.258 43.478 0.00 0.00 0.00 1.85
2222 2302 8.962679 CCTTATATATAGTCACTCCACTTCCTC 58.037 40.741 0.00 0.00 0.00 3.71
2227 2307 6.562228 TGCCCTTATATATAGTCACTCCACT 58.438 40.000 0.00 0.00 0.00 4.00
2229 2309 7.422512 AGATGCCCTTATATATAGTCACTCCA 58.577 38.462 0.00 0.00 0.00 3.86
2232 2312 7.422512 TGGAGATGCCCTTATATATAGTCACT 58.577 38.462 0.00 0.00 34.97 3.41
2262 2342 3.330720 AAGACCTTCCTGGGGGCG 61.331 66.667 6.55 0.00 41.11 6.13
2263 2343 2.677848 GAAGACCTTCCTGGGGGC 59.322 66.667 6.55 0.00 41.11 5.80
2271 2351 0.253327 AATCGCCTGGGAAGACCTTC 59.747 55.000 0.00 1.27 41.11 3.46
2272 2352 0.698818 AAATCGCCTGGGAAGACCTT 59.301 50.000 0.00 0.00 41.11 3.50
2273 2353 0.698818 AAAATCGCCTGGGAAGACCT 59.301 50.000 0.00 0.00 41.11 3.85
2274 2354 1.545841 AAAAATCGCCTGGGAAGACC 58.454 50.000 0.00 0.00 40.81 3.85
2309 2389 3.656045 CGCGACTGGGCCGTTTTT 61.656 61.111 0.00 0.00 0.00 1.94
2327 2407 2.911221 GAAAATCGGGCTCCTGGGGG 62.911 65.000 0.00 0.00 0.00 5.40
2328 2408 1.453928 GAAAATCGGGCTCCTGGGG 60.454 63.158 0.00 0.00 0.00 4.96
2329 2409 1.819632 CGAAAATCGGGCTCCTGGG 60.820 63.158 0.00 0.00 36.00 4.45
2330 2410 2.472909 GCGAAAATCGGGCTCCTGG 61.473 63.158 1.64 0.00 40.84 4.45
2331 2411 2.472909 GGCGAAAATCGGGCTCCTG 61.473 63.158 1.64 0.00 40.84 3.86
2332 2412 2.124695 GGCGAAAATCGGGCTCCT 60.125 61.111 1.64 0.00 40.84 3.69
2333 2413 3.573491 CGGCGAAAATCGGGCTCC 61.573 66.667 0.00 0.00 40.84 4.70
2334 2414 3.573491 CCGGCGAAAATCGGGCTC 61.573 66.667 9.30 0.00 42.32 4.70
2337 2417 3.131478 AAGCCGGCGAAAATCGGG 61.131 61.111 23.20 0.00 45.75 5.14
2339 2419 2.100216 CCAAGCCGGCGAAAATCG 59.900 61.111 23.20 5.28 43.89 3.34
2340 2420 2.489751 CCCAAGCCGGCGAAAATC 59.510 61.111 23.20 0.00 0.00 2.17
2341 2421 3.758931 GCCCAAGCCGGCGAAAAT 61.759 61.111 23.20 0.00 39.64 1.82
2348 2428 2.146073 CTGTTTTCAGCCCAAGCCGG 62.146 60.000 0.00 0.00 41.24 6.13
2349 2429 1.286880 CTGTTTTCAGCCCAAGCCG 59.713 57.895 0.00 0.00 41.24 5.52
2418 2498 3.737172 CAAAACAGCTCGCCCCGG 61.737 66.667 0.00 0.00 0.00 5.73
2419 2499 3.737172 CCAAAACAGCTCGCCCCG 61.737 66.667 0.00 0.00 0.00 5.73
2420 2500 4.056125 GCCAAAACAGCTCGCCCC 62.056 66.667 0.00 0.00 0.00 5.80
2421 2501 4.404654 CGCCAAAACAGCTCGCCC 62.405 66.667 0.00 0.00 0.00 6.13
2424 2504 2.709629 TTTCGCGCCAAAACAGCTCG 62.710 55.000 0.00 0.00 39.68 5.03
2425 2505 0.593773 TTTTCGCGCCAAAACAGCTC 60.594 50.000 8.92 0.00 0.00 4.09
2426 2506 0.179124 TTTTTCGCGCCAAAACAGCT 60.179 45.000 12.58 0.00 0.00 4.24
2427 2507 0.229500 CTTTTTCGCGCCAAAACAGC 59.771 50.000 12.58 0.00 0.00 4.40
2428 2508 1.516864 GTCTTTTTCGCGCCAAAACAG 59.483 47.619 12.58 12.56 0.00 3.16
2429 2509 1.551145 GTCTTTTTCGCGCCAAAACA 58.449 45.000 12.58 0.00 0.00 2.83
2430 2510 0.496851 CGTCTTTTTCGCGCCAAAAC 59.503 50.000 12.58 1.73 0.00 2.43
2431 2511 1.203600 GCGTCTTTTTCGCGCCAAAA 61.204 50.000 8.92 8.92 44.67 2.44
2432 2512 1.655959 GCGTCTTTTTCGCGCCAAA 60.656 52.632 0.00 0.00 44.67 3.28
2433 2513 2.051703 GCGTCTTTTTCGCGCCAA 60.052 55.556 0.00 0.00 44.67 4.52
2439 2519 3.308878 CTGGCCCGCGTCTTTTTCG 62.309 63.158 4.92 0.00 0.00 3.46
2440 2520 2.561373 CTGGCCCGCGTCTTTTTC 59.439 61.111 4.92 0.00 0.00 2.29
2441 2521 3.670377 GCTGGCCCGCGTCTTTTT 61.670 61.111 2.41 0.00 0.00 1.94
2468 2548 4.117661 AAGACGAGGCGCCGAGTC 62.118 66.667 34.60 34.60 0.00 3.36
2469 2549 4.117661 GAAGACGAGGCGCCGAGT 62.118 66.667 25.73 25.73 0.00 4.18
2470 2550 4.856607 GGAAGACGAGGCGCCGAG 62.857 72.222 23.20 21.36 0.00 4.63
2475 2555 3.031417 ATTGGGGGAAGACGAGGCG 62.031 63.158 0.00 0.00 0.00 5.52
2476 2556 1.452108 CATTGGGGGAAGACGAGGC 60.452 63.158 0.00 0.00 0.00 4.70
2477 2557 1.224592 CCATTGGGGGAAGACGAGG 59.775 63.158 0.00 0.00 0.00 4.63
2478 2558 1.452108 GCCATTGGGGGAAGACGAG 60.452 63.158 4.53 0.00 37.04 4.18
2479 2559 2.674754 GCCATTGGGGGAAGACGA 59.325 61.111 4.53 0.00 37.04 4.20
2480 2560 2.440247 GGCCATTGGGGGAAGACG 60.440 66.667 4.53 0.00 37.04 4.18
2481 2561 1.076705 GAGGCCATTGGGGGAAGAC 60.077 63.158 5.01 0.00 37.04 3.01
2482 2562 2.679342 CGAGGCCATTGGGGGAAGA 61.679 63.158 5.01 0.00 37.04 2.87
2483 2563 2.124151 CGAGGCCATTGGGGGAAG 60.124 66.667 5.01 0.00 37.04 3.46
2484 2564 3.738481 CCGAGGCCATTGGGGGAA 61.738 66.667 5.01 0.00 37.04 3.97
2486 2566 4.060667 AACCGAGGCCATTGGGGG 62.061 66.667 5.01 0.00 36.65 5.40
2487 2567 2.440247 GAACCGAGGCCATTGGGG 60.440 66.667 5.01 0.07 36.65 4.96
2488 2568 2.440247 GGAACCGAGGCCATTGGG 60.440 66.667 5.01 2.18 36.65 4.12
2489 2569 2.440247 GGGAACCGAGGCCATTGG 60.440 66.667 5.01 5.86 40.86 3.16
2504 2584 2.906897 CCATTGATTCCCCGCGGG 60.907 66.667 37.99 37.99 46.11 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.