Multiple sequence alignment - TraesCS5B01G239100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G239100 chr5B 100.000 2762 0 0 1 2762 419643332 419646093 0.000000e+00 5101.0
1 TraesCS5B01G239100 chr5B 84.694 1176 118 33 652 1793 418374976 418373829 0.000000e+00 1118.0
2 TraesCS5B01G239100 chr5B 81.633 392 22 21 178 540 418377588 418377218 2.090000e-71 279.0
3 TraesCS5B01G239100 chr5B 86.638 232 23 3 1479 1702 419620462 419620693 1.640000e-62 250.0
4 TraesCS5B01G239100 chr5A 89.841 1319 88 16 591 1887 457003334 457004628 0.000000e+00 1652.0
5 TraesCS5B01G239100 chr5A 85.411 1179 112 38 655 1795 454817469 454816313 0.000000e+00 1170.0
6 TraesCS5B01G239100 chr5A 88.564 376 23 10 121 481 457002945 457003315 3.270000e-119 438.0
7 TraesCS5B01G239100 chr5A 92.739 303 22 0 2121 2423 457004925 457005227 3.270000e-119 438.0
8 TraesCS5B01G239100 chr5A 78.030 660 93 33 997 1639 456974799 456975423 4.350000e-98 368.0
9 TraesCS5B01G239100 chr5A 82.216 388 33 17 167 536 454820647 454820278 4.470000e-78 302.0
10 TraesCS5B01G239100 chr5A 84.848 66 7 2 2027 2092 454815706 454815644 2.300000e-06 63.9
11 TraesCS5B01G239100 chr5D 90.385 1248 83 16 642 1887 354890799 354892011 0.000000e+00 1605.0
12 TraesCS5B01G239100 chr5D 85.860 1174 125 23 652 1793 354031829 354030665 0.000000e+00 1210.0
13 TraesCS5B01G239100 chr5D 85.905 674 32 15 1 657 354889949 354890576 0.000000e+00 660.0
14 TraesCS5B01G239100 chr5D 94.304 316 13 1 2113 2423 354892314 354892629 1.920000e-131 479.0
15 TraesCS5B01G239100 chr5D 78.140 613 79 35 1101 1701 354836973 354837542 3.410000e-89 339.0
16 TraesCS5B01G239100 chr5D 97.059 34 1 0 1951 1984 354892100 354892133 1.070000e-04 58.4
17 TraesCS5B01G239100 chr1B 84.848 99 14 1 2646 2744 438183842 438183939 6.300000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G239100 chr5B 419643332 419646093 2761 False 5101.000000 5101 100.000000 1 2762 1 chr5B.!!$F2 2761
1 TraesCS5B01G239100 chr5B 418373829 418377588 3759 True 698.500000 1118 83.163500 178 1793 2 chr5B.!!$R1 1615
2 TraesCS5B01G239100 chr5A 457002945 457005227 2282 False 842.666667 1652 90.381333 121 2423 3 chr5A.!!$F2 2302
3 TraesCS5B01G239100 chr5A 454815644 454820647 5003 True 511.966667 1170 84.158333 167 2092 3 chr5A.!!$R1 1925
4 TraesCS5B01G239100 chr5A 456974799 456975423 624 False 368.000000 368 78.030000 997 1639 1 chr5A.!!$F1 642
5 TraesCS5B01G239100 chr5D 354030665 354031829 1164 True 1210.000000 1210 85.860000 652 1793 1 chr5D.!!$R1 1141
6 TraesCS5B01G239100 chr5D 354889949 354892629 2680 False 700.600000 1605 91.913250 1 2423 4 chr5D.!!$F2 2422
7 TraesCS5B01G239100 chr5D 354836973 354837542 569 False 339.000000 339 78.140000 1101 1701 1 chr5D.!!$F1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 620 0.593128 CAACAAGCTGTGGTGGTAGC 59.407 55.0 6.16 0.0 41.68 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2440 5844 0.03601 GTGGACTGGACAGGGTCATG 60.036 60.0 4.14 0.0 33.68 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.822990 CAGCTGGGCATTTCATTGAGT 59.177 47.619 5.57 0.00 0.00 3.41
30 31 3.193267 GGCATTTCATTGAGTAGTTGGCA 59.807 43.478 0.00 0.00 0.00 4.92
38 39 0.740868 GAGTAGTTGGCATGCGCTGA 60.741 55.000 12.44 0.00 38.60 4.26
60 61 1.536943 AACAGGAGACGGAGGCAGAC 61.537 60.000 0.00 0.00 0.00 3.51
63 64 1.748122 GGAGACGGAGGCAGACGTA 60.748 63.158 0.00 0.00 44.24 3.57
71 72 3.289525 GGCAGACGTAGAGCCTGT 58.710 61.111 15.77 0.00 44.92 4.00
364 406 2.501008 CGCCGCGGCAACTAAAAC 60.501 61.111 45.26 16.94 42.06 2.43
480 569 1.604308 CCGGTTTGGTTGGTACCCC 60.604 63.158 10.07 4.69 44.35 4.95
481 570 1.457165 CGGTTTGGTTGGTACCCCT 59.543 57.895 10.07 0.00 44.35 4.79
482 571 0.691904 CGGTTTGGTTGGTACCCCTA 59.308 55.000 10.07 0.00 44.35 3.53
483 572 1.611410 CGGTTTGGTTGGTACCCCTAC 60.611 57.143 10.07 4.91 44.35 3.18
505 594 1.476110 CCGGGTCAAGAAACCTTGTGA 60.476 52.381 0.00 0.00 41.27 3.58
529 618 2.428544 AACAACAAGCTGTGGTGGTA 57.571 45.000 15.35 0.00 45.68 3.25
530 619 2.297701 AACAACAAGCTGTGGTGGTAG 58.702 47.619 15.35 0.00 45.68 3.18
531 620 0.593128 CAACAAGCTGTGGTGGTAGC 59.407 55.000 6.16 0.00 41.68 3.58
532 621 5.829946 AACAACAAGCTGTGGTGGTAGCT 62.830 47.826 15.35 0.00 45.68 3.32
565 654 0.955428 TGGTCGATGCTCTGTTTGGC 60.955 55.000 0.00 0.00 0.00 4.52
566 655 1.421485 GTCGATGCTCTGTTTGGCG 59.579 57.895 0.00 0.00 0.00 5.69
567 656 1.005037 TCGATGCTCTGTTTGGCGT 60.005 52.632 0.00 0.00 0.00 5.68
581 670 0.943835 TGGCGTTCACTCATGACGTG 60.944 55.000 15.21 15.21 33.38 4.49
735 3581 6.889722 CCTTGAACCCAAAGGATTATGAACTA 59.110 38.462 0.00 0.00 36.73 2.24
817 3670 3.740128 ATGCGCGTCCACATCCCTC 62.740 63.158 8.43 0.00 0.00 4.30
818 3671 4.451150 GCGCGTCCACATCCCTCA 62.451 66.667 8.43 0.00 0.00 3.86
882 3746 2.616842 CCCCATTTATACGCACAACTCC 59.383 50.000 0.00 0.00 0.00 3.85
883 3747 3.275143 CCCATTTATACGCACAACTCCA 58.725 45.455 0.00 0.00 0.00 3.86
886 3750 4.574421 CCATTTATACGCACAACTCCATCA 59.426 41.667 0.00 0.00 0.00 3.07
888 3752 2.024176 ATACGCACAACTCCATCACC 57.976 50.000 0.00 0.00 0.00 4.02
889 3753 0.682292 TACGCACAACTCCATCACCA 59.318 50.000 0.00 0.00 0.00 4.17
899 3767 1.761198 CTCCATCACCAGCAGAGATCA 59.239 52.381 0.00 0.00 0.00 2.92
900 3768 1.483827 TCCATCACCAGCAGAGATCAC 59.516 52.381 0.00 0.00 0.00 3.06
901 3769 1.208776 CCATCACCAGCAGAGATCACA 59.791 52.381 0.00 0.00 0.00 3.58
902 3770 2.158798 CCATCACCAGCAGAGATCACAT 60.159 50.000 0.00 0.00 0.00 3.21
903 3771 3.070590 CCATCACCAGCAGAGATCACATA 59.929 47.826 0.00 0.00 0.00 2.29
904 3772 3.808466 TCACCAGCAGAGATCACATAC 57.192 47.619 0.00 0.00 0.00 2.39
906 3774 3.118992 TCACCAGCAGAGATCACATACAC 60.119 47.826 0.00 0.00 0.00 2.90
908 3776 3.453717 ACCAGCAGAGATCACATACACAT 59.546 43.478 0.00 0.00 0.00 3.21
909 3777 4.651045 ACCAGCAGAGATCACATACACATA 59.349 41.667 0.00 0.00 0.00 2.29
917 3786 7.596621 CAGAGATCACATACACATACACATACC 59.403 40.741 0.00 0.00 0.00 2.73
934 3817 1.452651 CCCACAAGCATCCATCGCT 60.453 57.895 0.00 0.00 42.98 4.93
938 3821 1.674441 CACAAGCATCCATCGCTGATT 59.326 47.619 0.00 0.00 40.35 2.57
970 3853 1.227853 ACAAGCAACCGGACCAGAC 60.228 57.895 9.46 0.00 0.00 3.51
989 3872 1.519455 CGACCGATCCCTTGCAGTC 60.519 63.158 0.00 0.00 0.00 3.51
1031 3914 2.840576 GCACCACTACCACCCCAA 59.159 61.111 0.00 0.00 0.00 4.12
1143 4038 3.148279 GGGTGGAGCTCCGACGAT 61.148 66.667 27.43 0.00 39.43 3.73
1148 4043 1.226717 GGAGCTCCGACGATGACAC 60.227 63.158 19.06 0.00 0.00 3.67
1149 4044 1.506718 GAGCTCCGACGATGACACA 59.493 57.895 0.87 0.00 0.00 3.72
1163 4064 2.502080 CACAGACGACGAGGACGC 60.502 66.667 0.00 0.00 43.96 5.19
1215 4116 5.617087 GCATGCTATAGTCATGTTCATGCTG 60.617 44.000 25.00 9.72 46.73 4.41
1217 4118 5.295152 TGCTATAGTCATGTTCATGCTGAG 58.705 41.667 7.80 10.23 0.00 3.35
1228 4135 4.060900 GTTCATGCTGAGTTCACTTGAGA 58.939 43.478 0.00 0.00 0.00 3.27
1229 4136 4.548451 TCATGCTGAGTTCACTTGAGAT 57.452 40.909 0.00 0.00 0.00 2.75
1233 4140 4.313282 TGCTGAGTTCACTTGAGATTGAG 58.687 43.478 0.00 0.00 0.00 3.02
1371 4295 1.880340 GAGCGCCTTCATCTGGTCG 60.880 63.158 2.29 0.00 0.00 4.79
1423 4347 2.291457 GAAGGTCTCGAGCCCTGAGC 62.291 65.000 17.19 5.16 44.25 4.26
1715 4645 4.988598 CAGTGGCCGCAACCTCGT 62.989 66.667 20.59 0.00 0.00 4.18
1816 4757 2.167662 CCCTGTTTGGATTGGGTACAC 58.832 52.381 0.00 0.00 38.35 2.90
1890 4866 3.074412 ACACAGAAATCACGGTCAATCC 58.926 45.455 0.00 0.00 0.00 3.01
1931 4956 1.801178 GTTTGAGAGTGCTGTAGTGGC 59.199 52.381 0.00 0.00 0.00 5.01
1932 4957 0.321671 TTGAGAGTGCTGTAGTGGCC 59.678 55.000 0.00 0.00 0.00 5.36
1934 4959 1.272480 TGAGAGTGCTGTAGTGGCCTA 60.272 52.381 3.32 0.00 0.00 3.93
1949 4990 2.225242 TGGCCTAGGGAAGAATTTGCAA 60.225 45.455 11.72 0.00 0.00 4.08
1952 5018 3.511540 GCCTAGGGAAGAATTTGCAAGTT 59.488 43.478 11.72 6.93 0.00 2.66
1994 5324 6.016024 TGCATGTACTTTCAGATTTGCTTTCT 60.016 34.615 0.00 0.00 0.00 2.52
2017 5347 2.038295 ACTCCCTCTGCTGTTTCTTCTG 59.962 50.000 0.00 0.00 0.00 3.02
2031 5363 2.925724 TCTTCTGGAAAACGGCTTTCA 58.074 42.857 12.56 0.00 44.61 2.69
2056 5388 1.299541 AGCAGTTCGTTGTTCCACTG 58.700 50.000 0.00 0.00 39.79 3.66
2057 5389 1.134521 AGCAGTTCGTTGTTCCACTGA 60.135 47.619 2.34 0.00 39.25 3.41
2059 5391 3.064207 GCAGTTCGTTGTTCCACTGATA 58.936 45.455 2.34 0.00 39.25 2.15
2060 5392 3.123621 GCAGTTCGTTGTTCCACTGATAG 59.876 47.826 2.34 0.00 39.25 2.08
2061 5393 4.307432 CAGTTCGTTGTTCCACTGATAGT 58.693 43.478 0.00 0.00 39.25 2.12
2092 5424 6.364435 GCAAAGAGCTAAAGACAGAATTTTGG 59.636 38.462 0.57 0.00 41.15 3.28
2104 5436 4.226761 CAGAATTTTGGACGGTAAACTGC 58.773 43.478 0.00 0.00 0.00 4.40
2106 5438 4.339814 AGAATTTTGGACGGTAAACTGCAA 59.660 37.500 0.00 0.00 0.00 4.08
2109 5441 0.948678 TGGACGGTAAACTGCAAAGC 59.051 50.000 0.00 0.00 0.00 3.51
2110 5442 0.110373 GGACGGTAAACTGCAAAGCG 60.110 55.000 7.72 7.72 39.81 4.68
2119 5518 0.321122 ACTGCAAAGCGAAGAGGAGG 60.321 55.000 0.00 0.00 0.00 4.30
2271 5670 6.460261 GCGATGATATCTAAATCCTGATCCGA 60.460 42.308 3.98 0.00 0.00 4.55
2389 5793 2.238353 CTGACGGTCACAGCTTTGG 58.762 57.895 6.76 0.00 0.00 3.28
2423 5827 4.644685 AGGACTGAAGATCAAGTAGCTCTC 59.355 45.833 0.00 0.00 0.00 3.20
2424 5828 4.644685 GGACTGAAGATCAAGTAGCTCTCT 59.355 45.833 0.00 0.00 0.00 3.10
2425 5829 5.221048 GGACTGAAGATCAAGTAGCTCTCTC 60.221 48.000 0.00 0.00 0.00 3.20
2426 5830 5.260424 ACTGAAGATCAAGTAGCTCTCTCA 58.740 41.667 0.00 0.00 0.00 3.27
2427 5831 5.714333 ACTGAAGATCAAGTAGCTCTCTCAA 59.286 40.000 0.00 0.00 0.00 3.02
2428 5832 5.960113 TGAAGATCAAGTAGCTCTCTCAAC 58.040 41.667 0.00 0.00 0.00 3.18
2429 5833 5.105554 TGAAGATCAAGTAGCTCTCTCAACC 60.106 44.000 0.00 0.00 0.00 3.77
2430 5834 3.704061 AGATCAAGTAGCTCTCTCAACCC 59.296 47.826 0.00 0.00 0.00 4.11
2431 5835 3.176924 TCAAGTAGCTCTCTCAACCCT 57.823 47.619 0.00 0.00 0.00 4.34
2432 5836 2.828520 TCAAGTAGCTCTCTCAACCCTG 59.171 50.000 0.00 0.00 0.00 4.45
2433 5837 1.190643 AGTAGCTCTCTCAACCCTGC 58.809 55.000 0.00 0.00 0.00 4.85
2434 5838 0.176910 GTAGCTCTCTCAACCCTGCC 59.823 60.000 0.00 0.00 0.00 4.85
2435 5839 1.323271 TAGCTCTCTCAACCCTGCCG 61.323 60.000 0.00 0.00 0.00 5.69
2436 5840 2.125350 CTCTCTCAACCCTGCCGC 60.125 66.667 0.00 0.00 0.00 6.53
2437 5841 3.672295 CTCTCTCAACCCTGCCGCC 62.672 68.421 0.00 0.00 0.00 6.13
2438 5842 3.710722 CTCTCAACCCTGCCGCCT 61.711 66.667 0.00 0.00 0.00 5.52
2439 5843 2.284331 TCTCAACCCTGCCGCCTA 60.284 61.111 0.00 0.00 0.00 3.93
2440 5844 2.125106 CTCAACCCTGCCGCCTAC 60.125 66.667 0.00 0.00 0.00 3.18
2441 5845 2.925706 TCAACCCTGCCGCCTACA 60.926 61.111 0.00 0.00 0.00 2.74
2442 5846 2.257409 CTCAACCCTGCCGCCTACAT 62.257 60.000 0.00 0.00 0.00 2.29
2443 5847 2.114670 CAACCCTGCCGCCTACATG 61.115 63.158 0.00 0.00 0.00 3.21
2444 5848 2.297895 AACCCTGCCGCCTACATGA 61.298 57.895 0.00 0.00 0.00 3.07
2445 5849 2.203070 CCCTGCCGCCTACATGAC 60.203 66.667 0.00 0.00 0.00 3.06
2446 5850 2.203070 CCTGCCGCCTACATGACC 60.203 66.667 0.00 0.00 0.00 4.02
2447 5851 2.203070 CTGCCGCCTACATGACCC 60.203 66.667 0.00 0.00 0.00 4.46
2448 5852 2.687200 TGCCGCCTACATGACCCT 60.687 61.111 0.00 0.00 0.00 4.34
2449 5853 2.203070 GCCGCCTACATGACCCTG 60.203 66.667 0.00 0.00 0.00 4.45
2450 5854 3.031417 GCCGCCTACATGACCCTGT 62.031 63.158 0.00 0.00 0.00 4.00
2451 5855 1.144057 CCGCCTACATGACCCTGTC 59.856 63.158 0.00 0.00 0.00 3.51
2452 5856 1.144057 CGCCTACATGACCCTGTCC 59.856 63.158 0.00 0.00 0.00 4.02
2453 5857 1.613317 CGCCTACATGACCCTGTCCA 61.613 60.000 0.00 0.00 0.00 4.02
2454 5858 0.179000 GCCTACATGACCCTGTCCAG 59.821 60.000 0.00 0.00 0.00 3.86
2455 5859 1.573108 CCTACATGACCCTGTCCAGT 58.427 55.000 0.00 0.00 0.00 4.00
2456 5860 1.482593 CCTACATGACCCTGTCCAGTC 59.517 57.143 0.00 0.00 0.00 3.51
2457 5861 1.482593 CTACATGACCCTGTCCAGTCC 59.517 57.143 0.00 0.00 31.76 3.85
2458 5862 0.473694 ACATGACCCTGTCCAGTCCA 60.474 55.000 0.00 0.00 31.76 4.02
2459 5863 0.036010 CATGACCCTGTCCAGTCCAC 60.036 60.000 0.00 0.00 31.76 4.02
2460 5864 1.201429 ATGACCCTGTCCAGTCCACC 61.201 60.000 0.00 0.00 31.76 4.61
2461 5865 1.536662 GACCCTGTCCAGTCCACCT 60.537 63.158 0.00 0.00 0.00 4.00
2462 5866 1.536662 ACCCTGTCCAGTCCACCTC 60.537 63.158 0.00 0.00 0.00 3.85
2463 5867 2.294078 CCCTGTCCAGTCCACCTCC 61.294 68.421 0.00 0.00 0.00 4.30
2464 5868 1.536418 CCTGTCCAGTCCACCTCCA 60.536 63.158 0.00 0.00 0.00 3.86
2465 5869 0.911525 CCTGTCCAGTCCACCTCCAT 60.912 60.000 0.00 0.00 0.00 3.41
2466 5870 0.251354 CTGTCCAGTCCACCTCCATG 59.749 60.000 0.00 0.00 0.00 3.66
2467 5871 1.200760 TGTCCAGTCCACCTCCATGG 61.201 60.000 4.97 4.97 41.57 3.66
2468 5872 2.273449 CCAGTCCACCTCCATGGC 59.727 66.667 6.96 0.00 39.85 4.40
2469 5873 2.124983 CAGTCCACCTCCATGGCG 60.125 66.667 6.96 0.00 39.85 5.69
2470 5874 2.607750 AGTCCACCTCCATGGCGT 60.608 61.111 6.96 2.21 39.85 5.68
2471 5875 2.125106 GTCCACCTCCATGGCGTC 60.125 66.667 6.96 0.00 39.85 5.19
2472 5876 3.399181 TCCACCTCCATGGCGTCC 61.399 66.667 6.96 0.00 39.85 4.79
2473 5877 4.489771 CCACCTCCATGGCGTCCC 62.490 72.222 6.96 0.00 40.22 4.46
2475 5879 3.402681 ACCTCCATGGCGTCCCAG 61.403 66.667 6.96 0.00 46.24 4.45
2476 5880 3.402681 CCTCCATGGCGTCCCAGT 61.403 66.667 6.96 0.00 46.24 4.00
2477 5881 2.187946 CTCCATGGCGTCCCAGTC 59.812 66.667 6.96 0.00 46.24 3.51
2478 5882 3.391665 CTCCATGGCGTCCCAGTCC 62.392 68.421 6.96 0.00 46.24 3.85
2479 5883 4.489771 CCATGGCGTCCCAGTCCC 62.490 72.222 0.00 0.00 46.24 4.46
2480 5884 3.716195 CATGGCGTCCCAGTCCCA 61.716 66.667 0.00 0.00 46.24 4.37
2481 5885 2.933287 ATGGCGTCCCAGTCCCAA 60.933 61.111 0.00 0.00 46.24 4.12
2482 5886 2.534396 ATGGCGTCCCAGTCCCAAA 61.534 57.895 0.00 0.00 46.24 3.28
2483 5887 2.359975 GGCGTCCCAGTCCCAAAG 60.360 66.667 0.00 0.00 0.00 2.77
2484 5888 3.056328 GCGTCCCAGTCCCAAAGC 61.056 66.667 0.00 0.00 0.00 3.51
2485 5889 2.750350 CGTCCCAGTCCCAAAGCT 59.250 61.111 0.00 0.00 0.00 3.74
2486 5890 1.376037 CGTCCCAGTCCCAAAGCTC 60.376 63.158 0.00 0.00 0.00 4.09
2487 5891 1.376037 GTCCCAGTCCCAAAGCTCG 60.376 63.158 0.00 0.00 0.00 5.03
2488 5892 2.045926 CCCAGTCCCAAAGCTCGG 60.046 66.667 0.00 0.00 0.00 4.63
2489 5893 2.045926 CCAGTCCCAAAGCTCGGG 60.046 66.667 13.96 13.96 46.03 5.14
2490 5894 2.750350 CAGTCCCAAAGCTCGGGT 59.250 61.111 18.37 0.45 44.81 5.28
2491 5895 1.073199 CAGTCCCAAAGCTCGGGTT 59.927 57.895 18.37 7.77 44.81 4.11
2492 5896 0.955919 CAGTCCCAAAGCTCGGGTTC 60.956 60.000 18.37 13.34 44.81 3.62
2493 5897 1.674651 GTCCCAAAGCTCGGGTTCC 60.675 63.158 18.37 6.74 44.81 3.62
2494 5898 1.846124 TCCCAAAGCTCGGGTTCCT 60.846 57.895 18.37 0.00 44.81 3.36
2495 5899 1.675641 CCCAAAGCTCGGGTTCCTG 60.676 63.158 12.24 0.00 39.05 3.86
2496 5900 1.675641 CCAAAGCTCGGGTTCCTGG 60.676 63.158 0.00 0.00 0.00 4.45
2497 5901 2.034221 AAAGCTCGGGTTCCTGGC 59.966 61.111 0.00 1.19 0.00 4.85
2498 5902 3.901797 AAAGCTCGGGTTCCTGGCG 62.902 63.158 0.00 0.00 0.00 5.69
2501 5905 4.760047 CTCGGGTTCCTGGCGGTG 62.760 72.222 0.00 0.00 0.00 4.94
2506 5910 4.373116 GTTCCTGGCGGTGCTCGA 62.373 66.667 4.33 0.00 42.43 4.04
2507 5911 3.390521 TTCCTGGCGGTGCTCGAT 61.391 61.111 4.33 0.00 42.43 3.59
2508 5912 3.664025 TTCCTGGCGGTGCTCGATG 62.664 63.158 4.33 0.00 42.43 3.84
2515 5919 4.101448 GGTGCTCGATGCCACCCT 62.101 66.667 15.41 0.00 42.00 4.34
2516 5920 2.045926 GTGCTCGATGCCACCCTT 60.046 61.111 4.73 0.00 42.00 3.95
2517 5921 2.109126 GTGCTCGATGCCACCCTTC 61.109 63.158 4.73 0.00 42.00 3.46
2518 5922 2.892425 GCTCGATGCCACCCTTCG 60.892 66.667 0.00 0.00 41.09 3.79
2519 5923 2.202932 CTCGATGCCACCCTTCGG 60.203 66.667 0.00 0.00 40.39 4.30
2520 5924 3.000819 TCGATGCCACCCTTCGGT 61.001 61.111 0.00 0.00 46.31 4.69
2544 5948 4.351054 CACAGCCCCACACCCTCC 62.351 72.222 0.00 0.00 0.00 4.30
2545 5949 4.599500 ACAGCCCCACACCCTCCT 62.599 66.667 0.00 0.00 0.00 3.69
2546 5950 3.721706 CAGCCCCACACCCTCCTC 61.722 72.222 0.00 0.00 0.00 3.71
2550 5954 4.715130 CCCACACCCTCCTCCCGA 62.715 72.222 0.00 0.00 0.00 5.14
2551 5955 3.077556 CCACACCCTCCTCCCGAG 61.078 72.222 0.00 0.00 38.46 4.63
2561 5965 4.087892 CTCCCGAGGTGGTGCCAG 62.088 72.222 0.00 0.00 40.61 4.85
2564 5968 4.394712 CCGAGGTGGTGCCAGGAC 62.395 72.222 0.00 0.00 38.91 3.85
2565 5969 4.742201 CGAGGTGGTGCCAGGACG 62.742 72.222 0.00 0.00 40.61 4.79
2566 5970 3.311110 GAGGTGGTGCCAGGACGA 61.311 66.667 0.00 0.00 40.61 4.20
2567 5971 3.591254 GAGGTGGTGCCAGGACGAC 62.591 68.421 0.00 0.00 40.61 4.34
2577 5981 4.371417 AGGACGACGGGGTGCCTA 62.371 66.667 0.00 0.00 0.00 3.93
2578 5982 3.384532 GGACGACGGGGTGCCTAA 61.385 66.667 0.00 0.00 0.00 2.69
2579 5983 2.728435 GGACGACGGGGTGCCTAAT 61.728 63.158 0.00 0.00 0.00 1.73
2580 5984 1.520787 GACGACGGGGTGCCTAATG 60.521 63.158 0.00 0.00 0.00 1.90
2581 5985 2.203015 CGACGGGGTGCCTAATGG 60.203 66.667 0.00 0.00 0.00 3.16
2592 5996 3.290776 CCTAATGGCTAGCGGTGAC 57.709 57.895 9.00 0.00 0.00 3.67
2609 6013 2.654877 CGGCTGGTGGTCGTTACT 59.345 61.111 0.00 0.00 38.36 2.24
2610 6014 1.005394 CGGCTGGTGGTCGTTACTT 60.005 57.895 0.00 0.00 38.36 2.24
2611 6015 1.289109 CGGCTGGTGGTCGTTACTTG 61.289 60.000 0.00 0.00 38.36 3.16
2612 6016 1.574702 GGCTGGTGGTCGTTACTTGC 61.575 60.000 0.00 0.00 0.00 4.01
2613 6017 1.897398 GCTGGTGGTCGTTACTTGCG 61.897 60.000 0.00 0.00 0.00 4.85
2614 6018 1.897398 CTGGTGGTCGTTACTTGCGC 61.897 60.000 0.00 0.00 0.00 6.09
2615 6019 2.674084 GGTGGTCGTTACTTGCGCC 61.674 63.158 4.18 0.00 0.00 6.53
2616 6020 2.735478 TGGTCGTTACTTGCGCCG 60.735 61.111 4.18 0.00 0.00 6.46
2617 6021 4.143363 GGTCGTTACTTGCGCCGC 62.143 66.667 4.18 0.00 0.00 6.53
2618 6022 3.110178 GTCGTTACTTGCGCCGCT 61.110 61.111 11.67 0.00 0.00 5.52
2619 6023 2.807895 TCGTTACTTGCGCCGCTC 60.808 61.111 11.67 0.00 0.00 5.03
2620 6024 4.191485 CGTTACTTGCGCCGCTCG 62.191 66.667 11.67 3.37 42.12 5.03
2621 6025 3.849953 GTTACTTGCGCCGCTCGG 61.850 66.667 11.67 3.56 38.94 4.63
2622 6026 4.367023 TTACTTGCGCCGCTCGGT 62.367 61.111 11.67 8.93 38.94 4.69
2623 6027 4.789075 TACTTGCGCCGCTCGGTC 62.789 66.667 11.67 3.31 38.94 4.79
2637 6041 4.452733 GGTCGGACCGGGCTCAAG 62.453 72.222 15.25 0.00 0.00 3.02
2638 6042 3.379445 GTCGGACCGGGCTCAAGA 61.379 66.667 15.25 0.00 0.00 3.02
2639 6043 2.363795 TCGGACCGGGCTCAAGAT 60.364 61.111 15.25 0.00 0.00 2.40
2640 6044 2.202932 CGGACCGGGCTCAAGATG 60.203 66.667 7.57 0.00 0.00 2.90
2641 6045 2.190578 GGACCGGGCTCAAGATGG 59.809 66.667 7.57 0.00 0.00 3.51
2642 6046 2.670148 GGACCGGGCTCAAGATGGT 61.670 63.158 7.57 0.00 35.14 3.55
2643 6047 1.299976 GACCGGGCTCAAGATGGTT 59.700 57.895 6.32 0.00 31.86 3.67
2644 6048 0.744771 GACCGGGCTCAAGATGGTTC 60.745 60.000 6.32 0.00 31.86 3.62
2645 6049 1.452108 CCGGGCTCAAGATGGTTCC 60.452 63.158 0.00 0.00 0.00 3.62
2646 6050 1.815421 CGGGCTCAAGATGGTTCCG 60.815 63.158 0.00 0.00 0.00 4.30
2647 6051 2.115291 GGGCTCAAGATGGTTCCGC 61.115 63.158 0.00 0.00 0.00 5.54
2648 6052 2.115291 GGCTCAAGATGGTTCCGCC 61.115 63.158 0.00 0.00 37.90 6.13
2649 6053 2.115291 GCTCAAGATGGTTCCGCCC 61.115 63.158 0.00 0.00 36.04 6.13
2650 6054 1.815421 CTCAAGATGGTTCCGCCCG 60.815 63.158 0.00 0.00 36.04 6.13
2651 6055 2.824041 CAAGATGGTTCCGCCCGG 60.824 66.667 0.00 0.00 36.04 5.73
2652 6056 4.796495 AAGATGGTTCCGCCCGGC 62.796 66.667 0.00 0.00 36.04 6.13
2668 6072 4.191015 GCTCCCCCGTTCCCCATC 62.191 72.222 0.00 0.00 0.00 3.51
2669 6073 2.366972 CTCCCCCGTTCCCCATCT 60.367 66.667 0.00 0.00 0.00 2.90
2670 6074 2.366435 TCCCCCGTTCCCCATCTC 60.366 66.667 0.00 0.00 0.00 2.75
2671 6075 2.690881 CCCCCGTTCCCCATCTCA 60.691 66.667 0.00 0.00 0.00 3.27
2672 6076 2.590092 CCCCGTTCCCCATCTCAC 59.410 66.667 0.00 0.00 0.00 3.51
2673 6077 1.995626 CCCCGTTCCCCATCTCACT 60.996 63.158 0.00 0.00 0.00 3.41
2674 6078 1.522569 CCCGTTCCCCATCTCACTC 59.477 63.158 0.00 0.00 0.00 3.51
2675 6079 0.978146 CCCGTTCCCCATCTCACTCT 60.978 60.000 0.00 0.00 0.00 3.24
2676 6080 0.461961 CCGTTCCCCATCTCACTCTC 59.538 60.000 0.00 0.00 0.00 3.20
2677 6081 0.461961 CGTTCCCCATCTCACTCTCC 59.538 60.000 0.00 0.00 0.00 3.71
2678 6082 0.833949 GTTCCCCATCTCACTCTCCC 59.166 60.000 0.00 0.00 0.00 4.30
2679 6083 0.719015 TTCCCCATCTCACTCTCCCT 59.281 55.000 0.00 0.00 0.00 4.20
2680 6084 0.263172 TCCCCATCTCACTCTCCCTC 59.737 60.000 0.00 0.00 0.00 4.30
2681 6085 0.031716 CCCCATCTCACTCTCCCTCA 60.032 60.000 0.00 0.00 0.00 3.86
2682 6086 1.623557 CCCCATCTCACTCTCCCTCAA 60.624 57.143 0.00 0.00 0.00 3.02
2683 6087 1.761784 CCCATCTCACTCTCCCTCAAG 59.238 57.143 0.00 0.00 0.00 3.02
2684 6088 1.138661 CCATCTCACTCTCCCTCAAGC 59.861 57.143 0.00 0.00 0.00 4.01
2685 6089 2.109774 CATCTCACTCTCCCTCAAGCT 58.890 52.381 0.00 0.00 0.00 3.74
2686 6090 1.846007 TCTCACTCTCCCTCAAGCTC 58.154 55.000 0.00 0.00 0.00 4.09
2687 6091 1.076187 TCTCACTCTCCCTCAAGCTCA 59.924 52.381 0.00 0.00 0.00 4.26
2688 6092 1.204467 CTCACTCTCCCTCAAGCTCAC 59.796 57.143 0.00 0.00 0.00 3.51
2689 6093 1.203112 TCACTCTCCCTCAAGCTCACT 60.203 52.381 0.00 0.00 0.00 3.41
2690 6094 1.204467 CACTCTCCCTCAAGCTCACTC 59.796 57.143 0.00 0.00 0.00 3.51
2691 6095 0.823460 CTCTCCCTCAAGCTCACTCC 59.177 60.000 0.00 0.00 0.00 3.85
2692 6096 0.616111 TCTCCCTCAAGCTCACTCCC 60.616 60.000 0.00 0.00 0.00 4.30
2693 6097 0.617249 CTCCCTCAAGCTCACTCCCT 60.617 60.000 0.00 0.00 0.00 4.20
2694 6098 0.710588 TCCCTCAAGCTCACTCCCTA 59.289 55.000 0.00 0.00 0.00 3.53
2695 6099 1.118838 CCCTCAAGCTCACTCCCTAG 58.881 60.000 0.00 0.00 0.00 3.02
2696 6100 0.463620 CCTCAAGCTCACTCCCTAGC 59.536 60.000 0.00 0.00 39.08 3.42
2697 6101 1.189752 CTCAAGCTCACTCCCTAGCA 58.810 55.000 0.00 0.00 41.32 3.49
2698 6102 0.898320 TCAAGCTCACTCCCTAGCAC 59.102 55.000 0.00 0.00 41.32 4.40
2699 6103 0.901124 CAAGCTCACTCCCTAGCACT 59.099 55.000 0.00 0.00 41.32 4.40
2700 6104 2.103373 CAAGCTCACTCCCTAGCACTA 58.897 52.381 0.00 0.00 41.32 2.74
2701 6105 2.065899 AGCTCACTCCCTAGCACTAG 57.934 55.000 0.00 0.00 41.32 2.57
2702 6106 0.387565 GCTCACTCCCTAGCACTAGC 59.612 60.000 0.00 0.00 38.63 3.42
2718 6122 2.581354 GCTGTCGGCTCTCATGGT 59.419 61.111 0.00 0.00 38.06 3.55
2719 6123 1.812922 GCTGTCGGCTCTCATGGTG 60.813 63.158 0.00 0.00 38.06 4.17
2720 6124 1.153489 CTGTCGGCTCTCATGGTGG 60.153 63.158 0.00 0.00 0.00 4.61
2721 6125 2.512515 GTCGGCTCTCATGGTGGC 60.513 66.667 0.00 0.00 0.00 5.01
2722 6126 3.785859 TCGGCTCTCATGGTGGCC 61.786 66.667 0.00 0.00 41.02 5.36
2724 6128 4.101448 GGCTCTCATGGTGGCCGT 62.101 66.667 0.00 0.00 35.08 5.68
2725 6129 2.821366 GCTCTCATGGTGGCCGTG 60.821 66.667 0.00 1.13 41.56 4.94
2726 6130 2.124983 CTCTCATGGTGGCCGTGG 60.125 66.667 0.00 0.00 40.65 4.94
2727 6131 2.606213 TCTCATGGTGGCCGTGGA 60.606 61.111 0.00 2.04 40.65 4.02
2728 6132 1.976132 CTCTCATGGTGGCCGTGGAT 61.976 60.000 0.00 0.00 40.65 3.41
2729 6133 1.820906 CTCATGGTGGCCGTGGATG 60.821 63.158 0.00 0.00 40.65 3.51
2730 6134 3.520862 CATGGTGGCCGTGGATGC 61.521 66.667 0.00 0.00 36.92 3.91
2731 6135 4.045781 ATGGTGGCCGTGGATGCA 62.046 61.111 0.00 0.00 0.00 3.96
2732 6136 3.582242 ATGGTGGCCGTGGATGCAA 62.582 57.895 0.00 0.00 0.00 4.08
2733 6137 2.988684 GGTGGCCGTGGATGCAAA 60.989 61.111 0.00 0.00 0.00 3.68
2734 6138 2.258286 GTGGCCGTGGATGCAAAC 59.742 61.111 0.00 0.00 0.00 2.93
2735 6139 2.115052 TGGCCGTGGATGCAAACT 59.885 55.556 0.00 0.00 0.00 2.66
2736 6140 1.530419 TGGCCGTGGATGCAAACTT 60.530 52.632 0.00 0.00 0.00 2.66
2737 6141 1.212751 GGCCGTGGATGCAAACTTC 59.787 57.895 0.00 0.00 0.00 3.01
2738 6142 1.523154 GGCCGTGGATGCAAACTTCA 61.523 55.000 0.00 0.00 0.00 3.02
2739 6143 0.527565 GCCGTGGATGCAAACTTCAT 59.472 50.000 0.00 0.00 0.00 2.57
2740 6144 1.468054 GCCGTGGATGCAAACTTCATC 60.468 52.381 0.00 0.00 39.56 2.92
2741 6145 1.202065 CCGTGGATGCAAACTTCATCG 60.202 52.381 0.00 0.00 40.80 3.84
2742 6146 1.202065 CGTGGATGCAAACTTCATCGG 60.202 52.381 0.00 0.00 40.80 4.18
2743 6147 0.810648 TGGATGCAAACTTCATCGGC 59.189 50.000 0.00 0.00 40.80 5.54
2744 6148 0.248215 GGATGCAAACTTCATCGGCG 60.248 55.000 0.00 0.00 40.80 6.46
2745 6149 0.726827 GATGCAAACTTCATCGGCGA 59.273 50.000 13.87 13.87 32.14 5.54
2746 6150 0.447801 ATGCAAACTTCATCGGCGAC 59.552 50.000 13.76 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.009051 CGCATGCCAACTACTCAATGA 58.991 47.619 13.15 0.00 0.00 2.57
18 19 1.020861 CAGCGCATGCCAACTACTCA 61.021 55.000 13.15 0.00 44.31 3.41
22 23 2.108514 GCTCAGCGCATGCCAACTA 61.109 57.895 13.15 0.00 44.31 2.24
38 39 2.948720 GCCTCCGTCTCCTGTTGCT 61.949 63.158 0.00 0.00 0.00 3.91
85 86 2.106477 TTGTATGCGCATGTTCCTGA 57.894 45.000 32.48 8.02 0.00 3.86
129 130 3.423645 GCTGCGTGAGTGAGTATGAAAAC 60.424 47.826 0.00 0.00 0.00 2.43
199 229 0.606130 TGATGCCAAGTGTGCGTGAT 60.606 50.000 0.00 0.00 0.00 3.06
360 402 5.249780 TGTATGTGAGTATGTGGGGTTTT 57.750 39.130 0.00 0.00 0.00 2.43
364 406 4.556233 CGTATGTATGTGAGTATGTGGGG 58.444 47.826 0.00 0.00 0.00 4.96
480 569 0.035725 GGTTTCTTGACCCGGGGTAG 60.036 60.000 27.92 18.36 35.25 3.18
481 570 0.474273 AGGTTTCTTGACCCGGGGTA 60.474 55.000 27.92 10.63 40.73 3.69
482 571 1.358051 AAGGTTTCTTGACCCGGGGT 61.358 55.000 27.92 21.21 40.73 4.95
483 572 1.458927 AAGGTTTCTTGACCCGGGG 59.541 57.895 27.92 12.73 40.73 5.73
505 594 3.430651 CCACCACAGCTTGTTGTTTGATT 60.431 43.478 0.00 0.00 0.00 2.57
565 654 1.977188 TAGCACGTCATGAGTGAACG 58.023 50.000 21.90 13.83 41.83 3.95
566 655 2.090658 CGTTAGCACGTCATGAGTGAAC 59.909 50.000 21.90 17.35 41.84 3.18
567 656 2.324860 CGTTAGCACGTCATGAGTGAA 58.675 47.619 21.90 10.47 41.84 3.18
581 670 0.721718 ACTGAAAGCGCATCGTTAGC 59.278 50.000 11.47 0.00 37.60 3.09
735 3581 1.153005 CCGGAGTCCGTAGCTAGGT 60.153 63.158 28.98 0.00 46.80 3.08
817 3670 1.666888 GCGAATGGGTTTTCAGCTGTG 60.667 52.381 14.67 0.00 0.00 3.66
818 3671 0.598065 GCGAATGGGTTTTCAGCTGT 59.402 50.000 14.67 0.00 0.00 4.40
878 3742 1.761784 GATCTCTGCTGGTGATGGAGT 59.238 52.381 5.17 0.00 0.00 3.85
882 3746 2.685850 TGTGATCTCTGCTGGTGATG 57.314 50.000 0.00 0.00 0.00 3.07
883 3747 3.708121 TGTATGTGATCTCTGCTGGTGAT 59.292 43.478 0.00 0.00 0.00 3.06
886 3750 2.833943 TGTGTATGTGATCTCTGCTGGT 59.166 45.455 0.00 0.00 0.00 4.00
888 3752 5.461407 GTGTATGTGTATGTGATCTCTGCTG 59.539 44.000 0.00 0.00 0.00 4.41
889 3753 5.127682 TGTGTATGTGTATGTGATCTCTGCT 59.872 40.000 0.00 0.00 0.00 4.24
899 3767 5.685520 TGTGGGTATGTGTATGTGTATGT 57.314 39.130 0.00 0.00 0.00 2.29
900 3768 5.007626 GCTTGTGGGTATGTGTATGTGTATG 59.992 44.000 0.00 0.00 0.00 2.39
901 3769 5.123227 GCTTGTGGGTATGTGTATGTGTAT 58.877 41.667 0.00 0.00 0.00 2.29
902 3770 4.020128 TGCTTGTGGGTATGTGTATGTGTA 60.020 41.667 0.00 0.00 0.00 2.90
903 3771 3.244735 TGCTTGTGGGTATGTGTATGTGT 60.245 43.478 0.00 0.00 0.00 3.72
904 3772 3.342719 TGCTTGTGGGTATGTGTATGTG 58.657 45.455 0.00 0.00 0.00 3.21
906 3774 3.565482 GGATGCTTGTGGGTATGTGTATG 59.435 47.826 0.00 0.00 0.00 2.39
908 3776 2.573915 TGGATGCTTGTGGGTATGTGTA 59.426 45.455 0.00 0.00 0.00 2.90
909 3777 1.354031 TGGATGCTTGTGGGTATGTGT 59.646 47.619 0.00 0.00 0.00 3.72
917 3786 0.745486 TCAGCGATGGATGCTTGTGG 60.745 55.000 0.00 0.00 41.72 4.17
970 3853 2.202932 CTGCAAGGGATCGGTCGG 60.203 66.667 0.00 0.00 0.00 4.79
989 3872 2.124819 AAGGCATCGCTCCAGCTG 60.125 61.111 6.78 6.78 39.32 4.24
1018 3901 1.299976 GGAGCTTGGGGTGGTAGTG 59.700 63.158 0.00 0.00 0.00 2.74
1031 3914 3.400054 GGTTAGTGGCCGGGAGCT 61.400 66.667 2.18 0.00 43.05 4.09
1089 3981 2.759114 CAGGGGACATGGCAGTGT 59.241 61.111 0.00 0.00 34.39 3.55
1143 4038 1.838568 CGTCCTCGTCGTCTGTGTCA 61.839 60.000 0.00 0.00 0.00 3.58
1163 4064 3.244105 CCTGTTTGGTGTCGAGCG 58.756 61.111 0.00 0.00 0.00 5.03
1210 4111 4.903054 TCAATCTCAAGTGAACTCAGCAT 58.097 39.130 0.00 0.00 0.00 3.79
1215 4116 4.887748 TGACCTCAATCTCAAGTGAACTC 58.112 43.478 0.00 0.00 0.00 3.01
1217 4118 5.240891 TCATGACCTCAATCTCAAGTGAAC 58.759 41.667 0.00 0.00 0.00 3.18
1228 4135 5.026121 TCTCCTGTTACTCATGACCTCAAT 58.974 41.667 0.00 0.00 0.00 2.57
1229 4136 4.416516 TCTCCTGTTACTCATGACCTCAA 58.583 43.478 0.00 0.00 0.00 3.02
1233 4140 5.652891 TCTTACTCTCCTGTTACTCATGACC 59.347 44.000 0.00 0.00 0.00 4.02
1371 4295 2.202892 GGATCGAGCGGGGTGAAC 60.203 66.667 0.00 0.00 0.00 3.18
1423 4347 0.944311 CCTTCCACCACGACGAACTG 60.944 60.000 0.00 0.00 0.00 3.16
1497 4427 4.238385 TTCACCGAGAAGAACGCG 57.762 55.556 3.53 3.53 41.18 6.01
1733 4669 2.609491 GCTGTGATCTTGTGACCGTACA 60.609 50.000 0.00 0.00 0.00 2.90
1816 4757 1.135315 CCCGAGAGCACGCAAAATG 59.865 57.895 0.00 0.00 0.00 2.32
1891 4867 2.028930 ACCATCTCAACGAGGTCAACTC 60.029 50.000 0.00 0.00 43.02 3.01
1892 4868 1.971357 ACCATCTCAACGAGGTCAACT 59.029 47.619 0.00 0.00 0.00 3.16
1893 4869 2.457366 ACCATCTCAACGAGGTCAAC 57.543 50.000 0.00 0.00 0.00 3.18
1895 4871 2.367241 TCAAACCATCTCAACGAGGTCA 59.633 45.455 0.00 0.00 32.05 4.02
1896 4872 2.996621 CTCAAACCATCTCAACGAGGTC 59.003 50.000 0.00 0.00 32.05 3.85
1898 4874 3.257393 CTCTCAAACCATCTCAACGAGG 58.743 50.000 0.00 0.00 0.00 4.63
1899 4875 3.677121 CACTCTCAAACCATCTCAACGAG 59.323 47.826 0.00 0.00 0.00 4.18
1900 4876 3.653344 CACTCTCAAACCATCTCAACGA 58.347 45.455 0.00 0.00 0.00 3.85
1909 4885 2.224281 CCACTACAGCACTCTCAAACCA 60.224 50.000 0.00 0.00 0.00 3.67
1931 4956 6.830838 AGATAACTTGCAAATTCTTCCCTAGG 59.169 38.462 0.06 0.06 0.00 3.02
1932 4957 7.554118 TGAGATAACTTGCAAATTCTTCCCTAG 59.446 37.037 0.00 0.00 0.00 3.02
1934 4959 6.248433 TGAGATAACTTGCAAATTCTTCCCT 58.752 36.000 0.00 0.00 0.00 4.20
1949 4990 7.772292 ACATGCATGTGAGTTATTGAGATAACT 59.228 33.333 30.92 10.63 44.95 2.24
1952 5018 8.424133 AGTACATGCATGTGAGTTATTGAGATA 58.576 33.333 36.72 13.16 41.89 1.98
1994 5324 1.722034 AGAAACAGCAGAGGGAGTCA 58.278 50.000 0.00 0.00 0.00 3.41
2017 5347 3.317150 CTTGGATTGAAAGCCGTTTTCC 58.683 45.455 5.38 0.00 43.72 3.13
2031 5363 2.293399 GGAACAACGAACTGCTTGGATT 59.707 45.455 0.00 0.00 0.00 3.01
2056 5388 7.383843 GTCTTTAGCTCTTTGCCTCATACTATC 59.616 40.741 0.00 0.00 44.23 2.08
2057 5389 7.147655 TGTCTTTAGCTCTTTGCCTCATACTAT 60.148 37.037 0.00 0.00 44.23 2.12
2059 5391 5.046304 TGTCTTTAGCTCTTTGCCTCATACT 60.046 40.000 0.00 0.00 44.23 2.12
2060 5392 5.178797 TGTCTTTAGCTCTTTGCCTCATAC 58.821 41.667 0.00 0.00 44.23 2.39
2061 5393 5.187772 TCTGTCTTTAGCTCTTTGCCTCATA 59.812 40.000 0.00 0.00 44.23 2.15
2092 5424 0.863144 TCGCTTTGCAGTTTACCGTC 59.137 50.000 0.00 0.00 0.00 4.79
2104 5436 1.270305 TGTCACCTCCTCTTCGCTTTG 60.270 52.381 0.00 0.00 0.00 2.77
2106 5438 0.318762 GTGTCACCTCCTCTTCGCTT 59.681 55.000 0.00 0.00 0.00 4.68
2109 5441 0.109689 GTCGTGTCACCTCCTCTTCG 60.110 60.000 0.00 0.00 0.00 3.79
2110 5442 0.244178 GGTCGTGTCACCTCCTCTTC 59.756 60.000 0.00 0.00 33.08 2.87
2119 5518 1.670791 TTCCCTTTTGGTCGTGTCAC 58.329 50.000 0.00 0.00 38.10 3.67
2258 5657 1.409427 GGTCTCGTCGGATCAGGATTT 59.591 52.381 0.00 0.00 0.00 2.17
2271 5670 0.400213 TTGCCCAGATTTGGTCTCGT 59.600 50.000 0.96 0.00 43.40 4.18
2378 5782 1.227823 CCCACGACCAAAGCTGTGA 60.228 57.895 5.12 0.00 34.29 3.58
2423 5827 2.125106 GTAGGCGGCAGGGTTGAG 60.125 66.667 13.08 0.00 0.00 3.02
2424 5828 2.297895 ATGTAGGCGGCAGGGTTGA 61.298 57.895 13.08 0.00 0.00 3.18
2425 5829 2.114670 CATGTAGGCGGCAGGGTTG 61.115 63.158 13.08 0.00 0.00 3.77
2426 5830 2.272146 CATGTAGGCGGCAGGGTT 59.728 61.111 13.08 0.00 0.00 4.11
2427 5831 2.687200 TCATGTAGGCGGCAGGGT 60.687 61.111 13.08 0.00 0.00 4.34
2428 5832 2.203070 GTCATGTAGGCGGCAGGG 60.203 66.667 13.08 0.00 0.00 4.45
2429 5833 2.203070 GGTCATGTAGGCGGCAGG 60.203 66.667 13.08 0.00 0.00 4.85
2430 5834 2.203070 GGGTCATGTAGGCGGCAG 60.203 66.667 13.08 0.00 0.00 4.85
2431 5835 2.687200 AGGGTCATGTAGGCGGCA 60.687 61.111 13.08 0.00 0.00 5.69
2432 5836 2.203070 CAGGGTCATGTAGGCGGC 60.203 66.667 0.00 0.00 0.00 6.53
2433 5837 1.144057 GACAGGGTCATGTAGGCGG 59.856 63.158 0.00 0.00 32.25 6.13
2434 5838 1.144057 GGACAGGGTCATGTAGGCG 59.856 63.158 0.00 0.00 33.68 5.52
2435 5839 0.179000 CTGGACAGGGTCATGTAGGC 59.821 60.000 0.00 0.00 33.68 3.93
2436 5840 1.482593 GACTGGACAGGGTCATGTAGG 59.517 57.143 4.14 0.00 33.68 3.18
2437 5841 1.482593 GGACTGGACAGGGTCATGTAG 59.517 57.143 4.14 0.00 33.68 2.74
2438 5842 1.203250 TGGACTGGACAGGGTCATGTA 60.203 52.381 4.14 0.00 33.68 2.29
2439 5843 0.473694 TGGACTGGACAGGGTCATGT 60.474 55.000 4.14 0.00 33.68 3.21
2440 5844 0.036010 GTGGACTGGACAGGGTCATG 60.036 60.000 4.14 0.00 33.68 3.07
2441 5845 1.201429 GGTGGACTGGACAGGGTCAT 61.201 60.000 4.14 0.00 33.68 3.06
2442 5846 1.841556 GGTGGACTGGACAGGGTCA 60.842 63.158 4.14 0.00 33.68 4.02
2443 5847 1.536662 AGGTGGACTGGACAGGGTC 60.537 63.158 4.14 0.00 0.00 4.46
2444 5848 1.536662 GAGGTGGACTGGACAGGGT 60.537 63.158 4.14 0.00 0.00 4.34
2445 5849 2.294078 GGAGGTGGACTGGACAGGG 61.294 68.421 4.14 0.00 0.00 4.45
2446 5850 0.911525 ATGGAGGTGGACTGGACAGG 60.912 60.000 4.14 0.00 0.00 4.00
2447 5851 0.251354 CATGGAGGTGGACTGGACAG 59.749 60.000 0.00 0.00 0.00 3.51
2448 5852 1.200760 CCATGGAGGTGGACTGGACA 61.201 60.000 5.56 0.00 42.02 4.02
2449 5853 1.604378 CCATGGAGGTGGACTGGAC 59.396 63.158 5.56 0.00 42.02 4.02
2450 5854 2.300967 GCCATGGAGGTGGACTGGA 61.301 63.158 18.40 0.00 42.02 3.86
2451 5855 2.273449 GCCATGGAGGTGGACTGG 59.727 66.667 18.40 0.00 42.02 4.00
2452 5856 2.124983 CGCCATGGAGGTGGACTG 60.125 66.667 18.40 0.00 44.45 3.51
2458 5862 3.402681 CTGGGACGCCATGGAGGT 61.403 66.667 18.40 12.70 40.61 3.85
2459 5863 3.391665 GACTGGGACGCCATGGAGG 62.392 68.421 18.40 8.99 41.84 4.30
2460 5864 2.187946 GACTGGGACGCCATGGAG 59.812 66.667 18.40 16.40 0.00 3.86
2461 5865 3.399181 GGACTGGGACGCCATGGA 61.399 66.667 18.40 0.00 0.00 3.41
2462 5866 4.489771 GGGACTGGGACGCCATGG 62.490 72.222 7.63 7.63 0.00 3.66
2463 5867 2.762969 TTTGGGACTGGGACGCCATG 62.763 60.000 0.00 0.00 0.00 3.66
2464 5868 2.484287 CTTTGGGACTGGGACGCCAT 62.484 60.000 0.00 0.00 0.00 4.40
2465 5869 3.172106 TTTGGGACTGGGACGCCA 61.172 61.111 0.00 0.00 0.00 5.69
2466 5870 2.359975 CTTTGGGACTGGGACGCC 60.360 66.667 0.00 0.00 0.00 5.68
2467 5871 3.056328 GCTTTGGGACTGGGACGC 61.056 66.667 0.00 0.00 0.00 5.19
2468 5872 1.376037 GAGCTTTGGGACTGGGACG 60.376 63.158 0.00 0.00 0.00 4.79
2469 5873 1.376037 CGAGCTTTGGGACTGGGAC 60.376 63.158 0.00 0.00 0.00 4.46
2470 5874 2.592993 CCGAGCTTTGGGACTGGGA 61.593 63.158 0.00 0.00 33.93 4.37
2471 5875 2.045926 CCGAGCTTTGGGACTGGG 60.046 66.667 0.00 0.00 0.00 4.45
2478 5882 1.675641 CCAGGAACCCGAGCTTTGG 60.676 63.158 1.14 1.14 0.00 3.28
2479 5883 2.335712 GCCAGGAACCCGAGCTTTG 61.336 63.158 0.00 0.00 0.00 2.77
2480 5884 2.034221 GCCAGGAACCCGAGCTTT 59.966 61.111 0.00 0.00 0.00 3.51
2481 5885 4.394712 CGCCAGGAACCCGAGCTT 62.395 66.667 0.00 0.00 0.00 3.74
2484 5888 4.760047 CACCGCCAGGAACCCGAG 62.760 72.222 0.00 0.00 41.02 4.63
2489 5893 3.665675 ATCGAGCACCGCCAGGAAC 62.666 63.158 0.00 0.00 41.02 3.62
2490 5894 3.390521 ATCGAGCACCGCCAGGAA 61.391 61.111 0.00 0.00 41.02 3.36
2491 5895 4.147449 CATCGAGCACCGCCAGGA 62.147 66.667 0.00 0.00 41.02 3.86
2501 5905 2.892425 CGAAGGGTGGCATCGAGC 60.892 66.667 2.16 0.00 44.65 5.03
2527 5931 4.351054 GGAGGGTGTGGGGCTGTG 62.351 72.222 0.00 0.00 0.00 3.66
2528 5932 4.599500 AGGAGGGTGTGGGGCTGT 62.599 66.667 0.00 0.00 0.00 4.40
2529 5933 3.721706 GAGGAGGGTGTGGGGCTG 61.722 72.222 0.00 0.00 0.00 4.85
2533 5937 4.715130 TCGGGAGGAGGGTGTGGG 62.715 72.222 0.00 0.00 0.00 4.61
2534 5938 3.077556 CTCGGGAGGAGGGTGTGG 61.078 72.222 0.00 0.00 39.22 4.17
2544 5948 4.087892 CTGGCACCACCTCGGGAG 62.088 72.222 0.00 0.00 40.22 4.30
2547 5951 4.394712 GTCCTGGCACCACCTCGG 62.395 72.222 0.00 0.00 40.22 4.63
2548 5952 4.742201 CGTCCTGGCACCACCTCG 62.742 72.222 0.00 0.00 40.22 4.63
2549 5953 3.311110 TCGTCCTGGCACCACCTC 61.311 66.667 0.00 0.00 40.22 3.85
2550 5954 3.626924 GTCGTCCTGGCACCACCT 61.627 66.667 0.00 0.00 40.22 4.00
2560 5964 3.892104 TTAGGCACCCCGTCGTCCT 62.892 63.158 0.00 0.00 35.76 3.85
2561 5965 2.728435 ATTAGGCACCCCGTCGTCC 61.728 63.158 0.00 0.00 35.76 4.79
2562 5966 1.520787 CATTAGGCACCCCGTCGTC 60.521 63.158 0.00 0.00 35.76 4.20
2563 5967 2.582436 CATTAGGCACCCCGTCGT 59.418 61.111 0.00 0.00 35.76 4.34
2564 5968 2.203015 CCATTAGGCACCCCGTCG 60.203 66.667 0.00 0.00 35.76 5.12
2574 5978 0.597637 CGTCACCGCTAGCCATTAGG 60.598 60.000 9.66 6.60 38.23 2.69
2575 5979 0.597637 CCGTCACCGCTAGCCATTAG 60.598 60.000 9.66 0.00 0.00 1.73
2576 5980 1.440060 CCGTCACCGCTAGCCATTA 59.560 57.895 9.66 0.00 0.00 1.90
2577 5981 2.186903 CCGTCACCGCTAGCCATT 59.813 61.111 9.66 0.00 0.00 3.16
2578 5982 4.530857 GCCGTCACCGCTAGCCAT 62.531 66.667 9.66 0.00 0.00 4.40
2582 5986 3.760035 ACCAGCCGTCACCGCTAG 61.760 66.667 0.00 0.00 0.00 3.42
2583 5987 4.063967 CACCAGCCGTCACCGCTA 62.064 66.667 0.00 0.00 0.00 4.26
2588 5992 2.424705 TAACGACCACCAGCCGTCAC 62.425 60.000 0.00 0.00 35.28 3.67
2589 5993 2.201708 TAACGACCACCAGCCGTCA 61.202 57.895 0.00 0.00 35.28 4.35
2590 5994 1.735559 GTAACGACCACCAGCCGTC 60.736 63.158 0.00 0.00 35.28 4.79
2591 5995 1.751349 AAGTAACGACCACCAGCCGT 61.751 55.000 0.00 0.00 38.24 5.68
2592 5996 1.005394 AAGTAACGACCACCAGCCG 60.005 57.895 0.00 0.00 0.00 5.52
2593 5997 1.574702 GCAAGTAACGACCACCAGCC 61.575 60.000 0.00 0.00 0.00 4.85
2594 5998 1.866925 GCAAGTAACGACCACCAGC 59.133 57.895 0.00 0.00 0.00 4.85
2595 5999 1.897398 GCGCAAGTAACGACCACCAG 61.897 60.000 0.30 0.00 41.68 4.00
2596 6000 1.957186 GCGCAAGTAACGACCACCA 60.957 57.895 0.30 0.00 41.68 4.17
2597 6001 2.674084 GGCGCAAGTAACGACCACC 61.674 63.158 10.83 0.00 41.68 4.61
2598 6002 2.858158 GGCGCAAGTAACGACCAC 59.142 61.111 10.83 0.00 41.68 4.16
2599 6003 2.735478 CGGCGCAAGTAACGACCA 60.735 61.111 10.83 0.00 34.12 4.02
2600 6004 4.143363 GCGGCGCAAGTAACGACC 62.143 66.667 29.21 0.00 34.12 4.79
2601 6005 3.067846 GAGCGGCGCAAGTAACGAC 62.068 63.158 35.02 9.17 41.68 4.34
2602 6006 2.807895 GAGCGGCGCAAGTAACGA 60.808 61.111 35.02 0.00 41.68 3.85
2603 6007 4.191485 CGAGCGGCGCAAGTAACG 62.191 66.667 35.02 22.45 41.68 3.18
2604 6008 3.849953 CCGAGCGGCGCAAGTAAC 61.850 66.667 35.02 15.54 39.11 2.50
2605 6009 4.367023 ACCGAGCGGCGCAAGTAA 62.367 61.111 35.02 0.00 39.32 2.24
2606 6010 4.789075 GACCGAGCGGCGCAAGTA 62.789 66.667 35.02 0.00 39.32 2.24
2620 6024 4.452733 CTTGAGCCCGGTCCGACC 62.453 72.222 14.39 7.59 34.05 4.79
2621 6025 2.722201 ATCTTGAGCCCGGTCCGAC 61.722 63.158 14.39 4.30 0.00 4.79
2622 6026 2.363795 ATCTTGAGCCCGGTCCGA 60.364 61.111 14.39 0.00 0.00 4.55
2623 6027 2.202932 CATCTTGAGCCCGGTCCG 60.203 66.667 3.60 3.60 0.00 4.79
2624 6028 2.190578 CCATCTTGAGCCCGGTCC 59.809 66.667 0.00 0.00 0.00 4.46
2625 6029 0.744771 GAACCATCTTGAGCCCGGTC 60.745 60.000 0.00 0.00 0.00 4.79
2626 6030 1.299976 GAACCATCTTGAGCCCGGT 59.700 57.895 0.00 0.00 0.00 5.28
2627 6031 1.452108 GGAACCATCTTGAGCCCGG 60.452 63.158 0.00 0.00 0.00 5.73
2628 6032 1.815421 CGGAACCATCTTGAGCCCG 60.815 63.158 0.00 0.00 0.00 6.13
2629 6033 2.115291 GCGGAACCATCTTGAGCCC 61.115 63.158 0.00 0.00 0.00 5.19
2630 6034 2.115291 GGCGGAACCATCTTGAGCC 61.115 63.158 0.00 0.00 38.86 4.70
2631 6035 2.115291 GGGCGGAACCATCTTGAGC 61.115 63.158 0.00 0.00 42.05 4.26
2632 6036 1.815421 CGGGCGGAACCATCTTGAG 60.815 63.158 0.00 0.00 42.05 3.02
2633 6037 2.267642 CGGGCGGAACCATCTTGA 59.732 61.111 0.00 0.00 42.05 3.02
2634 6038 2.824041 CCGGGCGGAACCATCTTG 60.824 66.667 0.00 0.00 42.05 3.02
2635 6039 4.796495 GCCGGGCGGAACCATCTT 62.796 66.667 1.81 0.00 42.05 2.40
2651 6055 4.191015 GATGGGGAACGGGGGAGC 62.191 72.222 0.00 0.00 0.00 4.70
2652 6056 2.366972 AGATGGGGAACGGGGGAG 60.367 66.667 0.00 0.00 0.00 4.30
2653 6057 2.366435 GAGATGGGGAACGGGGGA 60.366 66.667 0.00 0.00 0.00 4.81
2654 6058 2.690881 TGAGATGGGGAACGGGGG 60.691 66.667 0.00 0.00 0.00 5.40
2655 6059 1.972660 GAGTGAGATGGGGAACGGGG 61.973 65.000 0.00 0.00 0.00 5.73
2656 6060 0.978146 AGAGTGAGATGGGGAACGGG 60.978 60.000 0.00 0.00 0.00 5.28
2657 6061 0.461961 GAGAGTGAGATGGGGAACGG 59.538 60.000 0.00 0.00 0.00 4.44
2658 6062 0.461961 GGAGAGTGAGATGGGGAACG 59.538 60.000 0.00 0.00 0.00 3.95
2659 6063 0.833949 GGGAGAGTGAGATGGGGAAC 59.166 60.000 0.00 0.00 0.00 3.62
2660 6064 0.719015 AGGGAGAGTGAGATGGGGAA 59.281 55.000 0.00 0.00 0.00 3.97
2661 6065 0.263172 GAGGGAGAGTGAGATGGGGA 59.737 60.000 0.00 0.00 0.00 4.81
2662 6066 0.031716 TGAGGGAGAGTGAGATGGGG 60.032 60.000 0.00 0.00 0.00 4.96
2663 6067 1.761784 CTTGAGGGAGAGTGAGATGGG 59.238 57.143 0.00 0.00 0.00 4.00
2664 6068 1.138661 GCTTGAGGGAGAGTGAGATGG 59.861 57.143 0.00 0.00 0.00 3.51
2665 6069 2.101249 GAGCTTGAGGGAGAGTGAGATG 59.899 54.545 0.00 0.00 0.00 2.90
2666 6070 2.292126 TGAGCTTGAGGGAGAGTGAGAT 60.292 50.000 0.00 0.00 0.00 2.75
2667 6071 1.076187 TGAGCTTGAGGGAGAGTGAGA 59.924 52.381 0.00 0.00 0.00 3.27
2668 6072 1.204467 GTGAGCTTGAGGGAGAGTGAG 59.796 57.143 0.00 0.00 0.00 3.51
2669 6073 1.203112 AGTGAGCTTGAGGGAGAGTGA 60.203 52.381 0.00 0.00 0.00 3.41
2670 6074 1.204467 GAGTGAGCTTGAGGGAGAGTG 59.796 57.143 0.00 0.00 0.00 3.51
2671 6075 1.555967 GAGTGAGCTTGAGGGAGAGT 58.444 55.000 0.00 0.00 0.00 3.24
2672 6076 0.823460 GGAGTGAGCTTGAGGGAGAG 59.177 60.000 0.00 0.00 0.00 3.20
2673 6077 0.616111 GGGAGTGAGCTTGAGGGAGA 60.616 60.000 0.00 0.00 0.00 3.71
2674 6078 0.617249 AGGGAGTGAGCTTGAGGGAG 60.617 60.000 0.00 0.00 0.00 4.30
2675 6079 0.710588 TAGGGAGTGAGCTTGAGGGA 59.289 55.000 0.00 0.00 0.00 4.20
2676 6080 1.118838 CTAGGGAGTGAGCTTGAGGG 58.881 60.000 0.00 0.00 0.00 4.30
2677 6081 0.463620 GCTAGGGAGTGAGCTTGAGG 59.536 60.000 0.00 0.00 35.73 3.86
2678 6082 1.134848 GTGCTAGGGAGTGAGCTTGAG 60.135 57.143 0.00 0.00 39.54 3.02
2679 6083 0.898320 GTGCTAGGGAGTGAGCTTGA 59.102 55.000 0.00 0.00 39.54 3.02
2680 6084 0.901124 AGTGCTAGGGAGTGAGCTTG 59.099 55.000 0.00 0.00 39.54 4.01
2681 6085 2.383855 CTAGTGCTAGGGAGTGAGCTT 58.616 52.381 0.00 0.00 39.54 3.74
2682 6086 2.026905 GCTAGTGCTAGGGAGTGAGCT 61.027 57.143 8.16 0.00 39.54 4.09
2683 6087 0.387565 GCTAGTGCTAGGGAGTGAGC 59.612 60.000 8.16 0.00 39.25 4.26
2701 6105 1.812922 CACCATGAGAGCCGACAGC 60.813 63.158 0.00 0.00 44.25 4.40
2702 6106 1.153489 CCACCATGAGAGCCGACAG 60.153 63.158 0.00 0.00 0.00 3.51
2703 6107 2.981302 CCACCATGAGAGCCGACA 59.019 61.111 0.00 0.00 0.00 4.35
2704 6108 2.512515 GCCACCATGAGAGCCGAC 60.513 66.667 0.00 0.00 0.00 4.79
2705 6109 3.785859 GGCCACCATGAGAGCCGA 61.786 66.667 0.00 0.00 35.30 5.54
2707 6111 4.101448 ACGGCCACCATGAGAGCC 62.101 66.667 2.24 9.15 42.18 4.70
2708 6112 2.821366 CACGGCCACCATGAGAGC 60.821 66.667 2.24 0.00 0.00 4.09
2709 6113 1.976132 ATCCACGGCCACCATGAGAG 61.976 60.000 2.24 0.00 0.00 3.20
2710 6114 1.995066 ATCCACGGCCACCATGAGA 60.995 57.895 2.24 0.00 0.00 3.27
2711 6115 1.820906 CATCCACGGCCACCATGAG 60.821 63.158 2.24 0.00 0.00 2.90
2712 6116 2.271821 CATCCACGGCCACCATGA 59.728 61.111 2.24 0.00 0.00 3.07
2713 6117 3.520862 GCATCCACGGCCACCATG 61.521 66.667 2.24 0.00 0.00 3.66
2714 6118 3.582242 TTGCATCCACGGCCACCAT 62.582 57.895 2.24 0.00 0.00 3.55
2715 6119 3.799286 TTTGCATCCACGGCCACCA 62.799 57.895 2.24 0.00 0.00 4.17
2716 6120 2.988684 TTTGCATCCACGGCCACC 60.989 61.111 2.24 0.00 0.00 4.61
2717 6121 1.805428 AAGTTTGCATCCACGGCCAC 61.805 55.000 2.24 0.00 0.00 5.01
2718 6122 1.523154 GAAGTTTGCATCCACGGCCA 61.523 55.000 2.24 0.00 0.00 5.36
2719 6123 1.212751 GAAGTTTGCATCCACGGCC 59.787 57.895 0.00 0.00 0.00 6.13
2720 6124 0.527565 ATGAAGTTTGCATCCACGGC 59.472 50.000 0.00 0.00 0.00 5.68
2721 6125 1.202065 CGATGAAGTTTGCATCCACGG 60.202 52.381 0.00 0.00 39.10 4.94
2722 6126 1.202065 CCGATGAAGTTTGCATCCACG 60.202 52.381 0.00 0.00 39.10 4.94
2723 6127 1.468054 GCCGATGAAGTTTGCATCCAC 60.468 52.381 0.00 0.00 39.10 4.02
2724 6128 0.810648 GCCGATGAAGTTTGCATCCA 59.189 50.000 0.00 0.00 39.10 3.41
2725 6129 0.248215 CGCCGATGAAGTTTGCATCC 60.248 55.000 0.00 0.00 39.10 3.51
2726 6130 0.726827 TCGCCGATGAAGTTTGCATC 59.273 50.000 0.00 0.00 38.95 3.91
2727 6131 0.447801 GTCGCCGATGAAGTTTGCAT 59.552 50.000 0.00 0.00 0.00 3.96
2728 6132 1.866237 GTCGCCGATGAAGTTTGCA 59.134 52.632 0.00 0.00 0.00 4.08
2729 6133 1.225745 CGTCGCCGATGAAGTTTGC 60.226 57.895 0.00 0.00 35.63 3.68
2730 6134 1.419922 CCGTCGCCGATGAAGTTTG 59.580 57.895 8.12 0.00 35.63 2.93
2731 6135 2.388232 GCCGTCGCCGATGAAGTTT 61.388 57.895 8.12 0.00 35.63 2.66
2732 6136 2.813908 GCCGTCGCCGATGAAGTT 60.814 61.111 8.12 0.00 35.63 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.