Multiple sequence alignment - TraesCS5B01G239000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G239000 chr5B 100.000 2519 0 0 1 2519 419622430 419619912 0.000000e+00 4652.0
1 TraesCS5B01G239000 chr5B 86.667 240 21 10 1719 1958 418373907 418374135 3.220000e-64 255.0
2 TraesCS5B01G239000 chr5B 86.638 232 23 3 1738 1969 419645033 419644810 1.500000e-62 250.0
3 TraesCS5B01G239000 chr5B 97.143 35 1 0 235 269 682698476 682698442 2.710000e-05 60.2
4 TraesCS5B01G239000 chr5D 91.278 1502 59 28 679 2157 354838580 354837128 0.000000e+00 1982.0
5 TraesCS5B01G239000 chr5D 98.324 179 1 2 450 628 412360970 412360794 1.880000e-81 313.0
6 TraesCS5B01G239000 chr5D 100.000 169 0 0 461 629 493835495 493835327 1.880000e-81 313.0
7 TraesCS5B01G239000 chr5D 99.419 172 0 1 462 633 451571527 451571697 6.770000e-81 311.0
8 TraesCS5B01G239000 chr5D 79.765 425 50 24 1739 2140 354891824 354891413 2.470000e-70 276.0
9 TraesCS5B01G239000 chr5D 86.235 247 23 5 1712 1958 354030736 354030971 8.940000e-65 257.0
10 TraesCS5B01G239000 chr5D 97.196 107 3 0 2413 2519 354836984 354836878 5.540000e-42 182.0
11 TraesCS5B01G239000 chr5A 86.714 1543 86 47 679 2150 456976555 456975061 0.000000e+00 1604.0
12 TraesCS5B01G239000 chr5A 91.538 260 19 1 2236 2492 456975055 456974796 3.080000e-94 355.0
13 TraesCS5B01G239000 chr5A 100.000 171 0 0 461 631 32840115 32839945 1.450000e-82 316.0
14 TraesCS5B01G239000 chr5A 79.343 426 52 24 1739 2141 457004435 457004023 1.490000e-67 267.0
15 TraesCS5B01G239000 chr1B 100.000 171 0 0 461 631 145726363 145726533 1.450000e-82 316.0
16 TraesCS5B01G239000 chr1B 95.699 93 3 1 2143 2235 498863831 498863922 5.610000e-32 148.0
17 TraesCS5B01G239000 chr1D 100.000 169 0 0 462 630 475111169 475111001 1.880000e-81 313.0
18 TraesCS5B01G239000 chr1D 92.593 108 5 3 2134 2241 416477038 416477142 4.340000e-33 152.0
19 TraesCS5B01G239000 chr4A 99.419 172 0 1 462 633 445074713 445074543 6.770000e-81 311.0
20 TraesCS5B01G239000 chr4A 100.000 167 0 0 462 628 611919711 611919545 2.430000e-80 309.0
21 TraesCS5B01G239000 chr7D 97.253 182 3 2 461 641 100988776 100988596 8.750000e-80 307.0
22 TraesCS5B01G239000 chr6A 84.649 228 33 2 229 455 613994320 613994094 2.520000e-55 226.0
23 TraesCS5B01G239000 chr6A 81.818 143 21 1 235 372 570932839 570932697 5.690000e-22 115.0
24 TraesCS5B01G239000 chr6A 78.151 119 19 4 223 335 531295617 531295734 4.500000e-08 69.4
25 TraesCS5B01G239000 chrUn 87.248 149 18 1 9 157 69780547 69780694 4.310000e-38 169.0
26 TraesCS5B01G239000 chr2A 97.895 95 2 0 2141 2235 362443064 362443158 5.570000e-37 165.0
27 TraesCS5B01G239000 chr2A 90.083 121 6 5 2141 2257 348617699 348617581 4.340000e-33 152.0
28 TraesCS5B01G239000 chr2A 78.947 171 31 3 229 394 533528602 533528432 7.370000e-21 111.0
29 TraesCS5B01G239000 chr2B 100.000 88 0 0 2148 2235 383927932 383927845 2.000000e-36 163.0
30 TraesCS5B01G239000 chr2B 97.826 92 2 0 2150 2241 445897949 445897858 2.590000e-35 159.0
31 TraesCS5B01G239000 chr2B 100.000 85 0 0 2151 2235 77856060 77856144 9.330000e-35 158.0
32 TraesCS5B01G239000 chr2B 79.556 225 35 6 224 448 728957962 728957749 1.560000e-32 150.0
33 TraesCS5B01G239000 chr7A 98.864 88 1 0 2148 2235 416496841 416496928 9.330000e-35 158.0
34 TraesCS5B01G239000 chr7B 95.833 96 2 2 2141 2235 536260535 536260629 1.210000e-33 154.0
35 TraesCS5B01G239000 chr3D 82.400 125 8 7 333 455 114023660 114023548 2.060000e-16 97.1
36 TraesCS5B01G239000 chr3D 97.500 40 1 0 412 451 104277270 104277231 4.500000e-08 69.4
37 TraesCS5B01G239000 chr3B 96.078 51 2 0 412 462 72721032 72721082 1.610000e-12 84.2
38 TraesCS5B01G239000 chr4B 84.058 69 9 2 207 274 560051053 560051120 5.820000e-07 65.8
39 TraesCS5B01G239000 chr1A 97.368 38 1 0 233 270 471785429 471785392 5.820000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G239000 chr5B 419619912 419622430 2518 True 4652.0 4652 100.000 1 2519 1 chr5B.!!$R1 2518
1 TraesCS5B01G239000 chr5D 354836878 354838580 1702 True 1082.0 1982 94.237 679 2519 2 chr5D.!!$R4 1840
2 TraesCS5B01G239000 chr5A 456974796 456976555 1759 True 979.5 1604 89.126 679 2492 2 chr5A.!!$R3 1813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 668 0.032912 TGGCCAGGTATAGTCCGACA 60.033 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 1778 0.248825 CGGAGCAGTAGTAGCAGCAG 60.249 60.0 0.0 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.330455 TCAGACGAAGATTTGCTACATCT 57.670 39.130 0.00 0.00 31.94 2.90
23 24 6.451064 TCAGACGAAGATTTGCTACATCTA 57.549 37.500 0.00 0.00 30.35 1.98
24 25 6.266323 TCAGACGAAGATTTGCTACATCTAC 58.734 40.000 0.00 0.00 30.35 2.59
25 26 5.172232 CAGACGAAGATTTGCTACATCTACG 59.828 44.000 0.00 0.00 30.35 3.51
26 27 4.360563 ACGAAGATTTGCTACATCTACGG 58.639 43.478 0.00 0.00 30.35 4.02
27 28 4.097437 ACGAAGATTTGCTACATCTACGGA 59.903 41.667 0.00 0.00 30.35 4.69
28 29 4.441415 CGAAGATTTGCTACATCTACGGAC 59.559 45.833 0.00 0.00 30.35 4.79
29 30 5.339008 AAGATTTGCTACATCTACGGACA 57.661 39.130 0.00 0.00 30.35 4.02
30 31 5.339008 AGATTTGCTACATCTACGGACAA 57.661 39.130 0.00 0.00 0.00 3.18
31 32 5.730550 AGATTTGCTACATCTACGGACAAA 58.269 37.500 0.00 0.00 0.00 2.83
32 33 6.349300 AGATTTGCTACATCTACGGACAAAT 58.651 36.000 0.00 0.00 38.55 2.32
33 34 6.480320 AGATTTGCTACATCTACGGACAAATC 59.520 38.462 14.52 14.52 46.11 2.17
34 35 4.729227 TGCTACATCTACGGACAAATCA 57.271 40.909 0.00 0.00 0.00 2.57
35 36 5.276461 TGCTACATCTACGGACAAATCAT 57.724 39.130 0.00 0.00 0.00 2.45
36 37 6.399639 TGCTACATCTACGGACAAATCATA 57.600 37.500 0.00 0.00 0.00 2.15
37 38 6.993079 TGCTACATCTACGGACAAATCATAT 58.007 36.000 0.00 0.00 0.00 1.78
38 39 8.117813 TGCTACATCTACGGACAAATCATATA 57.882 34.615 0.00 0.00 0.00 0.86
39 40 8.244113 TGCTACATCTACGGACAAATCATATAG 58.756 37.037 0.00 0.00 0.00 1.31
40 41 7.702772 GCTACATCTACGGACAAATCATATAGG 59.297 40.741 0.00 0.00 0.00 2.57
41 42 7.776618 ACATCTACGGACAAATCATATAGGA 57.223 36.000 0.00 0.00 0.00 2.94
42 43 8.367660 ACATCTACGGACAAATCATATAGGAT 57.632 34.615 0.00 0.00 0.00 3.24
43 44 8.470805 ACATCTACGGACAAATCATATAGGATC 58.529 37.037 0.00 0.00 0.00 3.36
44 45 8.470002 CATCTACGGACAAATCATATAGGATCA 58.530 37.037 0.00 0.00 0.00 2.92
45 46 8.595362 TCTACGGACAAATCATATAGGATCAT 57.405 34.615 0.00 0.00 0.00 2.45
46 47 8.470002 TCTACGGACAAATCATATAGGATCATG 58.530 37.037 0.00 6.05 0.00 3.07
47 48 6.409704 ACGGACAAATCATATAGGATCATGG 58.590 40.000 14.09 3.38 0.00 3.66
48 49 6.013379 ACGGACAAATCATATAGGATCATGGT 60.013 38.462 14.09 5.82 0.00 3.55
49 50 6.536582 CGGACAAATCATATAGGATCATGGTC 59.463 42.308 14.09 0.00 0.00 4.02
50 51 7.397221 GGACAAATCATATAGGATCATGGTCA 58.603 38.462 8.54 0.00 0.00 4.02
51 52 7.335422 GGACAAATCATATAGGATCATGGTCAC 59.665 40.741 8.54 0.00 0.00 3.67
52 53 6.875726 ACAAATCATATAGGATCATGGTCACG 59.124 38.462 8.54 0.00 0.00 4.35
53 54 5.604758 ATCATATAGGATCATGGTCACGG 57.395 43.478 8.54 0.00 0.00 4.94
54 55 4.672899 TCATATAGGATCATGGTCACGGA 58.327 43.478 8.54 0.00 0.00 4.69
55 56 5.083821 TCATATAGGATCATGGTCACGGAA 58.916 41.667 8.54 0.00 0.00 4.30
56 57 5.721480 TCATATAGGATCATGGTCACGGAAT 59.279 40.000 8.54 0.00 0.00 3.01
57 58 2.627515 AGGATCATGGTCACGGAATG 57.372 50.000 8.54 0.00 0.00 2.67
58 59 2.118679 AGGATCATGGTCACGGAATGA 58.881 47.619 8.54 0.00 34.96 2.57
59 60 2.103771 AGGATCATGGTCACGGAATGAG 59.896 50.000 8.54 0.00 38.28 2.90
60 61 2.103094 GGATCATGGTCACGGAATGAGA 59.897 50.000 8.54 0.00 38.28 3.27
61 62 3.244353 GGATCATGGTCACGGAATGAGAT 60.244 47.826 8.54 0.00 38.28 2.75
62 63 3.183793 TCATGGTCACGGAATGAGATG 57.816 47.619 0.00 0.00 38.28 2.90
63 64 2.158914 TCATGGTCACGGAATGAGATGG 60.159 50.000 0.00 0.00 38.28 3.51
64 65 0.107703 TGGTCACGGAATGAGATGGC 60.108 55.000 0.00 0.00 38.28 4.40
65 66 0.107703 GGTCACGGAATGAGATGGCA 60.108 55.000 0.00 0.00 38.28 4.92
66 67 1.678728 GGTCACGGAATGAGATGGCAA 60.679 52.381 0.00 0.00 38.28 4.52
67 68 1.398390 GTCACGGAATGAGATGGCAAC 59.602 52.381 0.00 0.00 38.28 4.17
68 69 1.003003 TCACGGAATGAGATGGCAACA 59.997 47.619 0.00 0.00 41.94 3.33
69 70 3.192939 TCACGGAATGAGATGGCAACAC 61.193 50.000 0.00 0.00 40.93 3.32
70 71 5.442614 TCACGGAATGAGATGGCAACACT 62.443 47.826 0.00 0.00 40.93 3.55
71 72 6.851695 TCACGGAATGAGATGGCAACACTT 62.852 45.833 0.00 0.00 40.93 3.16
72 73 7.538076 TCACGGAATGAGATGGCAACACTTA 62.538 44.000 0.00 0.00 40.93 2.24
85 86 3.790089 AACACTTAGTTGGGGAGGAAG 57.210 47.619 0.00 0.00 39.49 3.46
86 87 1.985895 ACACTTAGTTGGGGAGGAAGG 59.014 52.381 0.00 0.00 0.00 3.46
87 88 1.282157 CACTTAGTTGGGGAGGAAGGG 59.718 57.143 0.00 0.00 0.00 3.95
88 89 0.919710 CTTAGTTGGGGAGGAAGGGG 59.080 60.000 0.00 0.00 0.00 4.79
89 90 0.551624 TTAGTTGGGGAGGAAGGGGG 60.552 60.000 0.00 0.00 0.00 5.40
90 91 4.062032 GTTGGGGAGGAAGGGGGC 62.062 72.222 0.00 0.00 0.00 5.80
106 107 2.317530 GGCCCACCCCTAAGATTCA 58.682 57.895 0.00 0.00 0.00 2.57
107 108 0.629058 GGCCCACCCCTAAGATTCAA 59.371 55.000 0.00 0.00 0.00 2.69
108 109 1.410224 GGCCCACCCCTAAGATTCAAG 60.410 57.143 0.00 0.00 0.00 3.02
109 110 1.410224 GCCCACCCCTAAGATTCAAGG 60.410 57.143 0.00 0.00 0.00 3.61
114 115 3.403936 CCTAAGATTCAAGGGGCGG 57.596 57.895 0.00 0.00 0.00 6.13
115 116 0.837272 CCTAAGATTCAAGGGGCGGA 59.163 55.000 0.00 0.00 0.00 5.54
116 117 1.475213 CCTAAGATTCAAGGGGCGGAC 60.475 57.143 0.00 0.00 0.00 4.79
117 118 1.486726 CTAAGATTCAAGGGGCGGACT 59.513 52.381 0.00 0.00 0.00 3.85
118 119 1.580059 AAGATTCAAGGGGCGGACTA 58.420 50.000 0.00 0.00 0.00 2.59
119 120 1.123928 AGATTCAAGGGGCGGACTAG 58.876 55.000 0.00 0.00 0.00 2.57
120 121 0.831307 GATTCAAGGGGCGGACTAGT 59.169 55.000 0.00 0.00 0.00 2.57
121 122 0.541863 ATTCAAGGGGCGGACTAGTG 59.458 55.000 0.00 0.00 0.00 2.74
122 123 1.550130 TTCAAGGGGCGGACTAGTGG 61.550 60.000 0.00 0.00 0.00 4.00
123 124 2.687566 AAGGGGCGGACTAGTGGG 60.688 66.667 0.00 0.00 0.00 4.61
124 125 3.248248 AAGGGGCGGACTAGTGGGA 62.248 63.158 0.00 0.00 0.00 4.37
125 126 3.155167 GGGGCGGACTAGTGGGAG 61.155 72.222 0.00 0.00 0.00 4.30
126 127 2.043248 GGGCGGACTAGTGGGAGA 60.043 66.667 0.00 0.00 0.00 3.71
127 128 1.457831 GGGCGGACTAGTGGGAGAT 60.458 63.158 0.00 0.00 0.00 2.75
128 129 1.049289 GGGCGGACTAGTGGGAGATT 61.049 60.000 0.00 0.00 0.00 2.40
129 130 0.105039 GGCGGACTAGTGGGAGATTG 59.895 60.000 0.00 0.00 0.00 2.67
130 131 0.105039 GCGGACTAGTGGGAGATTGG 59.895 60.000 0.00 0.00 0.00 3.16
131 132 0.105039 CGGACTAGTGGGAGATTGGC 59.895 60.000 0.00 0.00 0.00 4.52
132 133 1.501582 GGACTAGTGGGAGATTGGCT 58.498 55.000 0.00 0.00 0.00 4.75
133 134 2.679082 GGACTAGTGGGAGATTGGCTA 58.321 52.381 0.00 0.00 0.00 3.93
134 135 2.630580 GGACTAGTGGGAGATTGGCTAG 59.369 54.545 0.00 0.00 36.25 3.42
135 136 2.630580 GACTAGTGGGAGATTGGCTAGG 59.369 54.545 0.00 0.00 34.94 3.02
136 137 1.974236 CTAGTGGGAGATTGGCTAGGG 59.026 57.143 0.00 0.00 0.00 3.53
137 138 0.343372 AGTGGGAGATTGGCTAGGGA 59.657 55.000 0.00 0.00 0.00 4.20
138 139 0.761802 GTGGGAGATTGGCTAGGGAG 59.238 60.000 0.00 0.00 0.00 4.30
139 140 0.642156 TGGGAGATTGGCTAGGGAGA 59.358 55.000 0.00 0.00 0.00 3.71
140 141 1.347062 GGGAGATTGGCTAGGGAGAG 58.653 60.000 0.00 0.00 0.00 3.20
141 142 1.133009 GGGAGATTGGCTAGGGAGAGA 60.133 57.143 0.00 0.00 0.00 3.10
142 143 2.247358 GGAGATTGGCTAGGGAGAGAG 58.753 57.143 0.00 0.00 0.00 3.20
143 144 2.425683 GGAGATTGGCTAGGGAGAGAGT 60.426 54.545 0.00 0.00 0.00 3.24
144 145 2.890945 GAGATTGGCTAGGGAGAGAGTC 59.109 54.545 0.00 0.00 0.00 3.36
145 146 1.967779 GATTGGCTAGGGAGAGAGTCC 59.032 57.143 0.00 0.00 46.10 3.85
158 159 6.370433 GGAGAGAGTCCATAAGCAAATTTC 57.630 41.667 0.00 0.00 46.10 2.17
159 160 5.007136 GGAGAGAGTCCATAAGCAAATTTCG 59.993 44.000 0.00 0.00 46.10 3.46
160 161 4.878397 AGAGAGTCCATAAGCAAATTTCGG 59.122 41.667 0.00 0.00 0.00 4.30
161 162 4.589908 AGAGTCCATAAGCAAATTTCGGT 58.410 39.130 0.00 0.00 0.00 4.69
162 163 4.396166 AGAGTCCATAAGCAAATTTCGGTG 59.604 41.667 0.00 0.00 0.00 4.94
163 164 4.079253 AGTCCATAAGCAAATTTCGGTGT 58.921 39.130 0.00 0.00 0.00 4.16
164 165 5.250200 AGTCCATAAGCAAATTTCGGTGTA 58.750 37.500 0.00 0.00 0.00 2.90
165 166 5.354234 AGTCCATAAGCAAATTTCGGTGTAG 59.646 40.000 0.00 0.00 0.00 2.74
166 167 5.353123 GTCCATAAGCAAATTTCGGTGTAGA 59.647 40.000 0.00 0.00 0.00 2.59
167 168 5.584649 TCCATAAGCAAATTTCGGTGTAGAG 59.415 40.000 0.00 0.00 0.00 2.43
168 169 5.354234 CCATAAGCAAATTTCGGTGTAGAGT 59.646 40.000 0.00 0.00 0.00 3.24
169 170 6.128007 CCATAAGCAAATTTCGGTGTAGAGTT 60.128 38.462 0.00 0.00 0.00 3.01
170 171 7.065324 CCATAAGCAAATTTCGGTGTAGAGTTA 59.935 37.037 0.00 0.00 0.00 2.24
171 172 8.612619 CATAAGCAAATTTCGGTGTAGAGTTAT 58.387 33.333 0.00 0.00 0.00 1.89
172 173 7.448748 AAGCAAATTTCGGTGTAGAGTTATT 57.551 32.000 0.00 0.00 0.00 1.40
173 174 6.842163 AGCAAATTTCGGTGTAGAGTTATTG 58.158 36.000 0.00 0.00 0.00 1.90
174 175 6.430000 AGCAAATTTCGGTGTAGAGTTATTGT 59.570 34.615 0.00 0.00 0.00 2.71
175 176 7.040686 AGCAAATTTCGGTGTAGAGTTATTGTT 60.041 33.333 0.00 0.00 0.00 2.83
176 177 7.593644 GCAAATTTCGGTGTAGAGTTATTGTTT 59.406 33.333 0.00 0.00 0.00 2.83
177 178 8.901748 CAAATTTCGGTGTAGAGTTATTGTTTG 58.098 33.333 0.00 0.00 0.00 2.93
178 179 7.972832 ATTTCGGTGTAGAGTTATTGTTTGA 57.027 32.000 0.00 0.00 0.00 2.69
179 180 7.416154 TTTCGGTGTAGAGTTATTGTTTGAG 57.584 36.000 0.00 0.00 0.00 3.02
180 181 6.335471 TCGGTGTAGAGTTATTGTTTGAGA 57.665 37.500 0.00 0.00 0.00 3.27
181 182 6.931838 TCGGTGTAGAGTTATTGTTTGAGAT 58.068 36.000 0.00 0.00 0.00 2.75
182 183 6.811665 TCGGTGTAGAGTTATTGTTTGAGATG 59.188 38.462 0.00 0.00 0.00 2.90
183 184 6.590292 CGGTGTAGAGTTATTGTTTGAGATGT 59.410 38.462 0.00 0.00 0.00 3.06
184 185 7.411912 CGGTGTAGAGTTATTGTTTGAGATGTG 60.412 40.741 0.00 0.00 0.00 3.21
185 186 7.387948 GGTGTAGAGTTATTGTTTGAGATGTGT 59.612 37.037 0.00 0.00 0.00 3.72
186 187 8.223769 GTGTAGAGTTATTGTTTGAGATGTGTG 58.776 37.037 0.00 0.00 0.00 3.82
187 188 6.808008 AGAGTTATTGTTTGAGATGTGTGG 57.192 37.500 0.00 0.00 0.00 4.17
188 189 6.533730 AGAGTTATTGTTTGAGATGTGTGGA 58.466 36.000 0.00 0.00 0.00 4.02
189 190 6.428159 AGAGTTATTGTTTGAGATGTGTGGAC 59.572 38.462 0.00 0.00 0.00 4.02
190 191 5.179368 AGTTATTGTTTGAGATGTGTGGACG 59.821 40.000 0.00 0.00 0.00 4.79
191 192 2.613026 TGTTTGAGATGTGTGGACGT 57.387 45.000 0.00 0.00 0.00 4.34
192 193 2.209273 TGTTTGAGATGTGTGGACGTG 58.791 47.619 0.00 0.00 0.00 4.49
193 194 2.210116 GTTTGAGATGTGTGGACGTGT 58.790 47.619 0.00 0.00 0.00 4.49
194 195 1.864565 TTGAGATGTGTGGACGTGTG 58.135 50.000 0.00 0.00 0.00 3.82
195 196 0.033366 TGAGATGTGTGGACGTGTGG 59.967 55.000 0.00 0.00 0.00 4.17
196 197 0.033504 GAGATGTGTGGACGTGTGGT 59.966 55.000 0.00 0.00 0.00 4.16
197 198 0.468226 AGATGTGTGGACGTGTGGTT 59.532 50.000 0.00 0.00 0.00 3.67
198 199 0.586319 GATGTGTGGACGTGTGGTTG 59.414 55.000 0.00 0.00 0.00 3.77
199 200 0.107410 ATGTGTGGACGTGTGGTTGT 60.107 50.000 0.00 0.00 0.00 3.32
200 201 1.021920 TGTGTGGACGTGTGGTTGTG 61.022 55.000 0.00 0.00 0.00 3.33
201 202 1.022451 GTGTGGACGTGTGGTTGTGT 61.022 55.000 0.00 0.00 0.00 3.72
202 203 1.021920 TGTGGACGTGTGGTTGTGTG 61.022 55.000 0.00 0.00 0.00 3.82
203 204 0.741574 GTGGACGTGTGGTTGTGTGA 60.742 55.000 0.00 0.00 0.00 3.58
204 205 0.741574 TGGACGTGTGGTTGTGTGAC 60.742 55.000 0.00 0.00 0.00 3.67
205 206 0.741574 GGACGTGTGGTTGTGTGACA 60.742 55.000 0.00 0.00 0.00 3.58
206 207 1.295792 GACGTGTGGTTGTGTGACAT 58.704 50.000 0.00 0.00 0.00 3.06
207 208 2.475818 GACGTGTGGTTGTGTGACATA 58.524 47.619 0.00 0.00 0.00 2.29
208 209 3.064207 GACGTGTGGTTGTGTGACATAT 58.936 45.455 0.00 0.00 0.00 1.78
209 210 4.239304 GACGTGTGGTTGTGTGACATATA 58.761 43.478 0.00 0.00 0.00 0.86
210 211 3.991773 ACGTGTGGTTGTGTGACATATAC 59.008 43.478 0.00 0.00 0.00 1.47
211 212 3.369756 CGTGTGGTTGTGTGACATATACC 59.630 47.826 6.73 6.73 0.00 2.73
212 213 4.575885 GTGTGGTTGTGTGACATATACCT 58.424 43.478 12.65 0.00 0.00 3.08
213 214 4.391830 GTGTGGTTGTGTGACATATACCTG 59.608 45.833 12.65 0.00 0.00 4.00
214 215 3.938963 GTGGTTGTGTGACATATACCTGG 59.061 47.826 12.65 0.00 0.00 4.45
215 216 3.054728 TGGTTGTGTGACATATACCTGGG 60.055 47.826 12.65 0.00 0.00 4.45
216 217 2.943033 GTTGTGTGACATATACCTGGGC 59.057 50.000 0.00 0.00 0.00 5.36
217 218 2.192263 TGTGTGACATATACCTGGGCA 58.808 47.619 0.00 0.00 0.00 5.36
218 219 2.573915 TGTGTGACATATACCTGGGCAA 59.426 45.455 0.00 0.00 0.00 4.52
219 220 3.009584 TGTGTGACATATACCTGGGCAAA 59.990 43.478 0.00 0.00 0.00 3.68
220 221 4.013728 GTGTGACATATACCTGGGCAAAA 58.986 43.478 0.00 0.00 0.00 2.44
221 222 4.013728 TGTGACATATACCTGGGCAAAAC 58.986 43.478 0.00 0.00 0.00 2.43
222 223 4.263727 TGTGACATATACCTGGGCAAAACT 60.264 41.667 0.00 0.00 0.00 2.66
223 224 4.335594 GTGACATATACCTGGGCAAAACTC 59.664 45.833 0.00 0.00 0.00 3.01
224 225 3.541632 ACATATACCTGGGCAAAACTCG 58.458 45.455 0.00 0.00 0.00 4.18
225 226 2.702592 TATACCTGGGCAAAACTCGG 57.297 50.000 0.00 0.00 0.00 4.63
226 227 0.034477 ATACCTGGGCAAAACTCGGG 60.034 55.000 0.00 0.00 0.00 5.14
227 228 2.757980 TACCTGGGCAAAACTCGGGC 62.758 60.000 0.00 0.00 0.00 6.13
247 248 3.449227 GGCCGGGCCTAACAAAGC 61.449 66.667 30.86 0.00 46.69 3.51
252 253 4.408378 GGCCTAACAAAGCCCGAA 57.592 55.556 0.00 0.00 43.76 4.30
253 254 2.180674 GGCCTAACAAAGCCCGAAG 58.819 57.895 0.00 0.00 43.76 3.79
254 255 1.506718 GCCTAACAAAGCCCGAAGC 59.493 57.895 0.00 0.00 44.25 3.86
265 266 2.902065 GCCCGAAGCAGAAAACTTAG 57.098 50.000 0.00 0.00 42.97 2.18
266 267 1.468914 GCCCGAAGCAGAAAACTTAGG 59.531 52.381 0.00 0.00 42.97 2.69
267 268 1.468914 CCCGAAGCAGAAAACTTAGGC 59.531 52.381 0.00 0.00 38.26 3.93
268 269 1.468914 CCGAAGCAGAAAACTTAGGCC 59.531 52.381 0.00 0.00 33.91 5.19
269 270 1.468914 CGAAGCAGAAAACTTAGGCCC 59.531 52.381 0.00 0.00 0.00 5.80
270 271 1.468914 GAAGCAGAAAACTTAGGCCCG 59.531 52.381 0.00 0.00 0.00 6.13
271 272 0.322546 AGCAGAAAACTTAGGCCCGG 60.323 55.000 0.00 0.00 0.00 5.73
272 273 1.313091 GCAGAAAACTTAGGCCCGGG 61.313 60.000 19.09 19.09 0.00 5.73
273 274 1.001269 AGAAAACTTAGGCCCGGGC 60.001 57.895 38.57 38.57 41.06 6.13
274 275 1.001269 GAAAACTTAGGCCCGGGCT 60.001 57.895 42.70 30.10 42.39 5.19
275 276 0.611062 GAAAACTTAGGCCCGGGCTT 60.611 55.000 42.70 38.64 39.70 4.35
276 277 0.898326 AAAACTTAGGCCCGGGCTTG 60.898 55.000 42.70 29.71 39.70 4.01
277 278 2.781431 AAACTTAGGCCCGGGCTTGG 62.781 60.000 42.70 31.92 39.70 3.61
295 296 2.510906 CCCGACCATTGGGCCTAG 59.489 66.667 4.53 0.00 40.47 3.02
296 297 2.375345 CCCGACCATTGGGCCTAGT 61.375 63.158 4.53 0.00 40.47 2.57
297 298 1.607612 CCGACCATTGGGCCTAGTT 59.392 57.895 4.53 0.00 37.90 2.24
298 299 0.034477 CCGACCATTGGGCCTAGTTT 60.034 55.000 4.53 0.00 37.90 2.66
299 300 1.615919 CCGACCATTGGGCCTAGTTTT 60.616 52.381 4.53 0.00 37.90 2.43
300 301 1.743394 CGACCATTGGGCCTAGTTTTC 59.257 52.381 4.53 0.00 37.90 2.29
301 302 2.802719 GACCATTGGGCCTAGTTTTCA 58.197 47.619 4.53 0.00 37.90 2.69
302 303 2.755103 GACCATTGGGCCTAGTTTTCAG 59.245 50.000 4.53 0.00 37.90 3.02
303 304 2.102578 CCATTGGGCCTAGTTTTCAGG 58.897 52.381 4.53 0.00 36.16 3.86
310 311 1.177401 CCTAGTTTTCAGGCCCAAGC 58.823 55.000 0.00 0.00 38.76 4.01
311 312 1.272147 CCTAGTTTTCAGGCCCAAGCT 60.272 52.381 0.00 0.00 39.73 3.74
312 313 2.087646 CTAGTTTTCAGGCCCAAGCTC 58.912 52.381 0.00 0.00 39.73 4.09
313 314 0.185901 AGTTTTCAGGCCCAAGCTCA 59.814 50.000 0.00 0.00 39.73 4.26
314 315 0.600057 GTTTTCAGGCCCAAGCTCAG 59.400 55.000 0.00 0.00 39.73 3.35
315 316 1.181098 TTTTCAGGCCCAAGCTCAGC 61.181 55.000 0.00 0.00 39.73 4.26
319 320 4.453892 GGCCCAAGCTCAGCCCAT 62.454 66.667 9.86 0.00 41.00 4.00
320 321 2.832201 GCCCAAGCTCAGCCCATC 60.832 66.667 0.00 0.00 35.50 3.51
321 322 2.679092 CCCAAGCTCAGCCCATCA 59.321 61.111 0.00 0.00 0.00 3.07
322 323 1.453379 CCCAAGCTCAGCCCATCAG 60.453 63.158 0.00 0.00 0.00 2.90
323 324 1.302285 CCAAGCTCAGCCCATCAGT 59.698 57.895 0.00 0.00 0.00 3.41
324 325 0.747283 CCAAGCTCAGCCCATCAGTC 60.747 60.000 0.00 0.00 0.00 3.51
325 326 0.035725 CAAGCTCAGCCCATCAGTCA 60.036 55.000 0.00 0.00 0.00 3.41
326 327 0.694771 AAGCTCAGCCCATCAGTCAA 59.305 50.000 0.00 0.00 0.00 3.18
327 328 0.694771 AGCTCAGCCCATCAGTCAAA 59.305 50.000 0.00 0.00 0.00 2.69
328 329 1.074405 AGCTCAGCCCATCAGTCAAAA 59.926 47.619 0.00 0.00 0.00 2.44
329 330 1.888512 GCTCAGCCCATCAGTCAAAAA 59.111 47.619 0.00 0.00 0.00 1.94
330 331 2.094854 GCTCAGCCCATCAGTCAAAAAG 60.095 50.000 0.00 0.00 0.00 2.27
331 332 1.888512 TCAGCCCATCAGTCAAAAAGC 59.111 47.619 0.00 0.00 0.00 3.51
332 333 1.067354 CAGCCCATCAGTCAAAAAGCC 60.067 52.381 0.00 0.00 0.00 4.35
333 334 0.247460 GCCCATCAGTCAAAAAGCCC 59.753 55.000 0.00 0.00 0.00 5.19
334 335 0.527565 CCCATCAGTCAAAAAGCCCG 59.472 55.000 0.00 0.00 0.00 6.13
335 336 1.247567 CCATCAGTCAAAAAGCCCGT 58.752 50.000 0.00 0.00 0.00 5.28
336 337 1.200020 CCATCAGTCAAAAAGCCCGTC 59.800 52.381 0.00 0.00 0.00 4.79
337 338 2.154462 CATCAGTCAAAAAGCCCGTCT 58.846 47.619 0.00 0.00 0.00 4.18
338 339 3.334691 CATCAGTCAAAAAGCCCGTCTA 58.665 45.455 0.00 0.00 0.00 2.59
339 340 3.040147 TCAGTCAAAAAGCCCGTCTAG 57.960 47.619 0.00 0.00 0.00 2.43
340 341 1.464997 CAGTCAAAAAGCCCGTCTAGC 59.535 52.381 0.00 0.00 0.00 3.42
341 342 0.803117 GTCAAAAAGCCCGTCTAGCC 59.197 55.000 0.00 0.00 0.00 3.93
342 343 0.690762 TCAAAAAGCCCGTCTAGCCT 59.309 50.000 0.00 0.00 0.00 4.58
343 344 1.087501 CAAAAAGCCCGTCTAGCCTC 58.912 55.000 0.00 0.00 0.00 4.70
344 345 0.391263 AAAAAGCCCGTCTAGCCTCG 60.391 55.000 0.00 0.00 0.00 4.63
345 346 2.240162 AAAAGCCCGTCTAGCCTCGG 62.240 60.000 11.85 11.85 45.42 4.63
348 349 4.208686 CCCGTCTAGCCTCGGCAC 62.209 72.222 11.02 0.00 44.63 5.01
363 364 3.226884 GCACGTGCCTCTTCCTTAA 57.773 52.632 30.12 0.00 34.31 1.85
364 365 1.519408 GCACGTGCCTCTTCCTTAAA 58.481 50.000 30.12 0.00 34.31 1.52
365 366 2.084546 GCACGTGCCTCTTCCTTAAAT 58.915 47.619 30.12 0.00 34.31 1.40
366 367 2.488153 GCACGTGCCTCTTCCTTAAATT 59.512 45.455 30.12 0.00 34.31 1.82
367 368 3.670627 GCACGTGCCTCTTCCTTAAATTG 60.671 47.826 30.12 0.00 34.31 2.32
368 369 2.488153 ACGTGCCTCTTCCTTAAATTGC 59.512 45.455 0.00 0.00 0.00 3.56
369 370 2.487762 CGTGCCTCTTCCTTAAATTGCA 59.512 45.455 0.00 0.00 0.00 4.08
370 371 3.057596 CGTGCCTCTTCCTTAAATTGCAA 60.058 43.478 0.00 0.00 0.00 4.08
371 372 4.558496 CGTGCCTCTTCCTTAAATTGCAAA 60.558 41.667 1.71 0.00 0.00 3.68
372 373 5.482006 GTGCCTCTTCCTTAAATTGCAAAT 58.518 37.500 1.71 0.00 0.00 2.32
373 374 6.624861 CGTGCCTCTTCCTTAAATTGCAAATA 60.625 38.462 1.71 0.00 0.00 1.40
374 375 6.531594 GTGCCTCTTCCTTAAATTGCAAATAC 59.468 38.462 1.71 0.00 0.00 1.89
375 376 6.210385 TGCCTCTTCCTTAAATTGCAAATACA 59.790 34.615 1.71 0.00 0.00 2.29
376 377 7.096551 GCCTCTTCCTTAAATTGCAAATACAA 58.903 34.615 1.71 0.00 0.00 2.41
377 378 7.063426 GCCTCTTCCTTAAATTGCAAATACAAC 59.937 37.037 1.71 0.00 31.03 3.32
378 379 8.087750 CCTCTTCCTTAAATTGCAAATACAACA 58.912 33.333 1.71 0.00 31.03 3.33
379 380 9.474920 CTCTTCCTTAAATTGCAAATACAACAA 57.525 29.630 1.71 0.00 31.03 2.83
380 381 9.474920 TCTTCCTTAAATTGCAAATACAACAAG 57.525 29.630 1.71 2.08 31.03 3.16
381 382 7.650834 TCCTTAAATTGCAAATACAACAAGC 57.349 32.000 1.71 0.00 31.03 4.01
382 383 6.648725 TCCTTAAATTGCAAATACAACAAGCC 59.351 34.615 1.71 0.00 31.03 4.35
383 384 6.426328 CCTTAAATTGCAAATACAACAAGCCA 59.574 34.615 1.71 0.00 31.03 4.75
384 385 7.041508 CCTTAAATTGCAAATACAACAAGCCAA 60.042 33.333 1.71 0.00 31.03 4.52
385 386 6.690194 AAATTGCAAATACAACAAGCCAAA 57.310 29.167 1.71 0.00 31.03 3.28
386 387 5.927954 ATTGCAAATACAACAAGCCAAAG 57.072 34.783 1.71 0.00 31.03 2.77
387 388 3.129871 TGCAAATACAACAAGCCAAAGC 58.870 40.909 0.00 0.00 40.32 3.51
388 389 2.480037 GCAAATACAACAAGCCAAAGCC 59.520 45.455 0.00 0.00 41.25 4.35
389 390 3.803368 GCAAATACAACAAGCCAAAGCCT 60.803 43.478 0.00 0.00 41.25 4.58
390 391 3.665745 AATACAACAAGCCAAAGCCTG 57.334 42.857 0.00 0.00 41.25 4.85
411 412 3.166434 TGGCCCGACCATGAAGTT 58.834 55.556 0.00 0.00 46.36 2.66
412 413 1.002624 TGGCCCGACCATGAAGTTC 60.003 57.895 0.00 0.00 46.36 3.01
413 414 1.002624 GGCCCGACCATGAAGTTCA 60.003 57.895 8.27 8.27 38.86 3.18
414 415 0.608035 GGCCCGACCATGAAGTTCAA 60.608 55.000 10.14 0.00 38.86 2.69
415 416 1.243902 GCCCGACCATGAAGTTCAAA 58.756 50.000 10.14 0.00 0.00 2.69
416 417 1.611491 GCCCGACCATGAAGTTCAAAA 59.389 47.619 10.14 0.00 0.00 2.44
417 418 2.035321 GCCCGACCATGAAGTTCAAAAA 59.965 45.455 10.14 0.00 0.00 1.94
418 419 3.638484 CCCGACCATGAAGTTCAAAAAC 58.362 45.455 10.14 2.00 35.50 2.43
420 421 4.517453 CCCGACCATGAAGTTCAAAAACTA 59.483 41.667 10.14 0.00 45.07 2.24
421 422 5.334879 CCCGACCATGAAGTTCAAAAACTAG 60.335 44.000 10.14 0.00 45.07 2.57
422 423 5.334879 CCGACCATGAAGTTCAAAAACTAGG 60.335 44.000 10.14 4.47 45.07 3.02
423 424 5.453567 ACCATGAAGTTCAAAAACTAGGC 57.546 39.130 10.14 0.00 45.07 3.93
424 425 4.280929 ACCATGAAGTTCAAAAACTAGGCC 59.719 41.667 10.14 0.00 45.07 5.19
425 426 4.321974 CCATGAAGTTCAAAAACTAGGCCC 60.322 45.833 10.14 0.00 45.07 5.80
426 427 3.904717 TGAAGTTCAAAAACTAGGCCCA 58.095 40.909 2.20 0.00 45.07 5.36
427 428 3.888930 TGAAGTTCAAAAACTAGGCCCAG 59.111 43.478 2.20 0.00 45.07 4.45
428 429 2.876581 AGTTCAAAAACTAGGCCCAGG 58.123 47.619 2.40 0.00 43.98 4.45
429 430 1.272490 GTTCAAAAACTAGGCCCAGGC 59.728 52.381 2.40 0.00 34.90 4.85
430 431 3.982876 GTTCAAAAACTAGGCCCAGGCC 61.983 54.545 20.64 20.64 45.43 5.19
471 472 4.157120 GTCCGGGCAGTGGCGTAT 62.157 66.667 10.99 0.00 42.47 3.06
472 473 3.845259 TCCGGGCAGTGGCGTATC 61.845 66.667 10.99 0.00 42.47 2.24
473 474 3.849951 CCGGGCAGTGGCGTATCT 61.850 66.667 10.99 0.00 42.47 1.98
474 475 2.495409 CCGGGCAGTGGCGTATCTA 61.495 63.158 10.99 0.00 42.47 1.98
475 476 1.007271 CGGGCAGTGGCGTATCTAG 60.007 63.158 10.99 0.00 42.47 2.43
476 477 1.367840 GGGCAGTGGCGTATCTAGG 59.632 63.158 10.99 0.00 42.47 3.02
477 478 1.367840 GGCAGTGGCGTATCTAGGG 59.632 63.158 0.00 0.00 42.47 3.53
478 479 1.367840 GCAGTGGCGTATCTAGGGG 59.632 63.158 0.00 0.00 0.00 4.79
479 480 2.050269 CAGTGGCGTATCTAGGGGG 58.950 63.158 0.00 0.00 0.00 5.40
480 481 0.759436 CAGTGGCGTATCTAGGGGGT 60.759 60.000 0.00 0.00 0.00 4.95
481 482 0.759436 AGTGGCGTATCTAGGGGGTG 60.759 60.000 0.00 0.00 0.00 4.61
482 483 1.458777 TGGCGTATCTAGGGGGTGG 60.459 63.158 0.00 0.00 0.00 4.61
483 484 1.152398 GGCGTATCTAGGGGGTGGA 60.152 63.158 0.00 0.00 0.00 4.02
484 485 1.470165 GGCGTATCTAGGGGGTGGAC 61.470 65.000 0.00 0.00 0.00 4.02
485 486 0.757935 GCGTATCTAGGGGGTGGACA 60.758 60.000 0.00 0.00 0.00 4.02
486 487 1.329256 CGTATCTAGGGGGTGGACAG 58.671 60.000 0.00 0.00 0.00 3.51
487 488 1.718280 GTATCTAGGGGGTGGACAGG 58.282 60.000 0.00 0.00 0.00 4.00
488 489 0.566176 TATCTAGGGGGTGGACAGGG 59.434 60.000 0.00 0.00 0.00 4.45
489 490 1.537478 ATCTAGGGGGTGGACAGGGT 61.537 60.000 0.00 0.00 0.00 4.34
490 491 1.995626 CTAGGGGGTGGACAGGGTG 60.996 68.421 0.00 0.00 0.00 4.61
491 492 3.572715 TAGGGGGTGGACAGGGTGG 62.573 68.421 0.00 0.00 0.00 4.61
493 494 3.647771 GGGGTGGACAGGGTGGTC 61.648 72.222 0.00 0.00 37.06 4.02
513 514 2.236489 CATGGACCACCCTGGAATTT 57.764 50.000 0.00 0.00 40.96 1.82
514 515 2.102578 CATGGACCACCCTGGAATTTC 58.897 52.381 0.00 0.00 40.96 2.17
515 516 0.407918 TGGACCACCCTGGAATTTCC 59.592 55.000 8.59 8.59 40.96 3.13
516 517 0.324368 GGACCACCCTGGAATTTCCC 60.324 60.000 12.90 0.00 40.96 3.97
517 518 0.324368 GACCACCCTGGAATTTCCCC 60.324 60.000 12.90 0.00 40.96 4.81
518 519 1.077298 ACCACCCTGGAATTTCCCCA 61.077 55.000 12.90 0.00 40.96 4.96
519 520 0.339510 CCACCCTGGAATTTCCCCAT 59.660 55.000 12.90 0.00 40.96 4.00
520 521 1.573376 CCACCCTGGAATTTCCCCATA 59.427 52.381 12.90 0.00 40.96 2.74
521 522 2.023501 CCACCCTGGAATTTCCCCATAA 60.024 50.000 12.90 0.00 40.96 1.90
522 523 3.375207 CCACCCTGGAATTTCCCCATAAT 60.375 47.826 12.90 0.00 40.96 1.28
523 524 4.140805 CCACCCTGGAATTTCCCCATAATA 60.141 45.833 12.90 0.00 40.96 0.98
524 525 5.461018 CCACCCTGGAATTTCCCCATAATAT 60.461 44.000 12.90 0.00 40.96 1.28
525 526 6.240733 CCACCCTGGAATTTCCCCATAATATA 60.241 42.308 12.90 0.00 40.96 0.86
526 527 7.421684 CACCCTGGAATTTCCCCATAATATAT 58.578 38.462 12.90 0.00 35.03 0.86
527 528 8.565239 CACCCTGGAATTTCCCCATAATATATA 58.435 37.037 12.90 0.00 35.03 0.86
528 529 9.321500 ACCCTGGAATTTCCCCATAATATATAT 57.678 33.333 12.90 0.00 35.03 0.86
593 594 8.489990 TTTATGTGAATATTTTGCATTGGTGG 57.510 30.769 0.00 0.00 0.00 4.61
594 595 5.735285 TGTGAATATTTTGCATTGGTGGA 57.265 34.783 0.00 0.00 0.00 4.02
595 596 5.477510 TGTGAATATTTTGCATTGGTGGAC 58.522 37.500 0.00 0.00 0.00 4.02
596 597 4.869861 GTGAATATTTTGCATTGGTGGACC 59.130 41.667 0.00 0.00 0.00 4.46
597 598 4.529769 TGAATATTTTGCATTGGTGGACCA 59.470 37.500 0.00 0.00 45.94 4.02
607 608 2.361610 GTGGACCACCCTGGCATG 60.362 66.667 14.16 0.00 42.67 4.06
608 609 2.858476 TGGACCACCCTGGCATGT 60.858 61.111 0.00 0.00 42.67 3.21
609 610 2.440599 GGACCACCCTGGCATGTT 59.559 61.111 0.00 0.00 42.67 2.71
610 611 1.978617 GGACCACCCTGGCATGTTG 60.979 63.158 0.00 0.00 42.67 3.33
611 612 1.978617 GACCACCCTGGCATGTTGG 60.979 63.158 4.83 4.83 42.67 3.77
612 613 2.681064 CCACCCTGGCATGTTGGG 60.681 66.667 15.17 15.17 46.07 4.12
613 614 3.384532 CACCCTGGCATGTTGGGC 61.385 66.667 16.24 0.00 44.56 5.36
614 615 3.593680 ACCCTGGCATGTTGGGCT 61.594 61.111 16.24 5.04 44.56 5.19
615 616 2.237965 ACCCTGGCATGTTGGGCTA 61.238 57.895 16.24 0.00 44.56 3.93
616 617 1.454479 CCCTGGCATGTTGGGCTAG 60.454 63.158 6.83 0.00 39.31 3.42
617 618 2.123428 CCTGGCATGTTGGGCTAGC 61.123 63.158 6.04 6.04 38.40 3.42
618 619 1.077212 CTGGCATGTTGGGCTAGCT 60.077 57.895 15.72 0.00 33.06 3.32
619 620 0.181114 CTGGCATGTTGGGCTAGCTA 59.819 55.000 15.72 0.96 33.06 3.32
620 621 0.107214 TGGCATGTTGGGCTAGCTAC 60.107 55.000 15.72 10.98 0.00 3.58
621 622 1.160329 GGCATGTTGGGCTAGCTACG 61.160 60.000 15.72 1.04 0.00 3.51
622 623 1.776034 GCATGTTGGGCTAGCTACGC 61.776 60.000 15.72 6.93 0.00 4.42
623 624 1.146263 ATGTTGGGCTAGCTACGCC 59.854 57.895 15.72 19.98 46.83 5.68
628 629 2.586357 GGCTAGCTACGCCACTGC 60.586 66.667 22.05 9.22 46.77 4.40
661 662 2.155065 GCCCATGGCCAGGTATAGT 58.845 57.895 17.55 0.00 44.06 2.12
662 663 0.036875 GCCCATGGCCAGGTATAGTC 59.963 60.000 17.55 0.00 44.06 2.59
663 664 0.693049 CCCATGGCCAGGTATAGTCC 59.307 60.000 17.55 0.00 0.00 3.85
664 665 0.321671 CCATGGCCAGGTATAGTCCG 59.678 60.000 17.55 0.00 0.00 4.79
665 666 1.338107 CATGGCCAGGTATAGTCCGA 58.662 55.000 13.05 0.00 0.00 4.55
666 667 1.000955 CATGGCCAGGTATAGTCCGAC 59.999 57.143 13.05 0.00 0.00 4.79
667 668 0.032912 TGGCCAGGTATAGTCCGACA 60.033 55.000 0.00 0.00 0.00 4.35
668 669 0.674534 GGCCAGGTATAGTCCGACAG 59.325 60.000 0.00 0.00 0.00 3.51
669 670 0.674534 GCCAGGTATAGTCCGACAGG 59.325 60.000 0.40 0.00 39.46 4.00
670 671 0.674534 CCAGGTATAGTCCGACAGGC 59.325 60.000 0.40 0.00 37.47 4.85
671 672 0.674534 CAGGTATAGTCCGACAGGCC 59.325 60.000 0.00 0.00 37.47 5.19
672 673 0.260816 AGGTATAGTCCGACAGGCCA 59.739 55.000 5.01 0.00 37.47 5.36
673 674 1.117150 GGTATAGTCCGACAGGCCAA 58.883 55.000 5.01 0.00 37.47 4.52
674 675 1.483415 GGTATAGTCCGACAGGCCAAA 59.517 52.381 5.01 0.00 37.47 3.28
675 676 2.547826 GTATAGTCCGACAGGCCAAAC 58.452 52.381 5.01 0.00 37.47 2.93
676 677 0.108329 ATAGTCCGACAGGCCAAACG 60.108 55.000 5.01 7.03 37.47 3.60
677 678 2.162338 TAGTCCGACAGGCCAAACGG 62.162 60.000 22.38 22.38 45.61 4.44
755 756 0.329261 CCTGAATCAGCCCAACTCCA 59.671 55.000 4.40 0.00 0.00 3.86
779 780 4.947388 AGCACTTTCCACTCTCTAGTCTAG 59.053 45.833 0.00 0.00 31.97 2.43
780 781 4.703093 GCACTTTCCACTCTCTAGTCTAGT 59.297 45.833 6.77 0.00 31.97 2.57
781 782 5.163693 GCACTTTCCACTCTCTAGTCTAGTC 60.164 48.000 6.77 0.00 31.97 2.59
782 783 6.177610 CACTTTCCACTCTCTAGTCTAGTCT 58.822 44.000 6.77 0.00 31.97 3.24
783 784 7.332557 CACTTTCCACTCTCTAGTCTAGTCTA 58.667 42.308 6.77 0.00 31.97 2.59
784 785 7.494625 CACTTTCCACTCTCTAGTCTAGTCTAG 59.505 44.444 15.49 15.49 38.83 2.43
881 886 2.203451 GCATCCCTGCCATCCCTG 60.203 66.667 0.00 0.00 42.88 4.45
882 887 2.203451 CATCCCTGCCATCCCTGC 60.203 66.667 0.00 0.00 0.00 4.85
883 888 3.505773 ATCCCTGCCATCCCTGCC 61.506 66.667 0.00 0.00 0.00 4.85
1520 1556 3.267860 GCGGCGGCTGATCTGAAG 61.268 66.667 14.15 0.00 35.83 3.02
1521 1557 2.496341 CGGCGGCTGATCTGAAGA 59.504 61.111 7.61 0.00 0.00 2.87
1527 1565 2.941720 GCGGCTGATCTGAAGATTTTCT 59.058 45.455 3.42 0.00 34.37 2.52
1554 1592 5.525199 TCTTTTCACGCCCTTTTATTTGTC 58.475 37.500 0.00 0.00 0.00 3.18
1613 1665 4.463050 ACAGTTTGGGGGTTTCATTCTA 57.537 40.909 0.00 0.00 0.00 2.10
1616 1668 3.401342 AGTTTGGGGGTTTCATTCTAGGT 59.599 43.478 0.00 0.00 0.00 3.08
1662 1714 2.477754 GGTGGCGCCGATTAACTATTAC 59.522 50.000 23.90 9.37 0.00 1.89
1734 1786 2.759973 ACGGCTAGGCTGCTGCTA 60.760 61.111 15.11 5.25 42.69 3.49
1737 1789 1.456196 CGGCTAGGCTGCTGCTACTA 61.456 60.000 15.11 8.25 39.59 1.82
1769 1821 2.047274 CCATTGCCACGAGTCGGT 60.047 61.111 18.30 0.00 0.00 4.69
1877 1929 2.188829 CGTCGCCGGTAGGTCCATA 61.189 63.158 1.90 0.00 40.50 2.74
1883 1935 1.335145 CCGGTAGGTCCATATCCGTT 58.665 55.000 0.00 0.00 39.62 4.44
1886 1938 2.561419 CGGTAGGTCCATATCCGTTGAT 59.439 50.000 0.00 0.00 36.99 2.57
1889 1941 4.223032 GGTAGGTCCATATCCGTTGATGAT 59.777 45.833 0.00 0.00 35.97 2.45
1892 1944 2.413112 GTCCATATCCGTTGATGATGCG 59.587 50.000 0.00 0.00 32.18 4.73
1998 2071 2.627699 GCATCCTTCTCCTCCTCAGTAG 59.372 54.545 0.00 0.00 0.00 2.57
2029 2102 2.961526 TCGATAGAGCTTGTTGGGTC 57.038 50.000 0.00 0.00 42.67 4.46
2035 2108 4.090057 GCTTGTTGGGTCGAGCGC 62.090 66.667 8.77 0.00 35.52 5.92
2042 2115 3.112709 GGGTCGAGCGCAGTGAAC 61.113 66.667 11.47 6.61 0.00 3.18
2056 2129 2.355481 GAACGACCACGCGAAGGT 60.355 61.111 23.80 23.80 43.96 3.50
2115 2188 2.110006 GCTTCCTCATCTCCCGGC 59.890 66.667 0.00 0.00 0.00 6.13
2157 2234 9.360093 GTATCACCTGAATGCAATATACTACTC 57.640 37.037 0.00 0.00 0.00 2.59
2158 2235 6.759272 TCACCTGAATGCAATATACTACTCC 58.241 40.000 0.00 0.00 0.00 3.85
2160 2237 5.846714 ACCTGAATGCAATATACTACTCCCT 59.153 40.000 0.00 0.00 0.00 4.20
2162 2239 6.360370 TGAATGCAATATACTACTCCCTCC 57.640 41.667 0.00 0.00 0.00 4.30
2166 2243 4.280174 TGCAATATACTACTCCCTCCGTTC 59.720 45.833 0.00 0.00 0.00 3.95
2169 2246 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
2170 2247 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2171 2248 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
2172 2249 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2173 2250 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2175 2252 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2176 2253 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2178 2255 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2179 2256 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2180 2257 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2181 2258 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2182 2259 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2183 2260 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2184 2261 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2185 2262 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2186 2263 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2187 2264 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2188 2265 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
2189 2266 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2190 2267 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2191 2268 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
2192 2269 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
2225 2302 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
2226 2303 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
2227 2304 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
2228 2305 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
2229 2306 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2230 2307 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2231 2308 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2232 2309 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2233 2310 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2234 2311 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2243 2320 1.667722 GAACGGAGGGGTTACACGT 59.332 57.895 0.00 0.00 39.74 4.49
2261 2338 1.511850 GTATGCGCCATGCTCACATA 58.488 50.000 4.18 0.00 46.63 2.29
2287 2364 0.664466 TCAAGAACAGAGCACGCTCG 60.664 55.000 13.12 10.57 46.90 5.03
2440 2520 1.062488 AGAGGGACCTGCAGTGGTTT 61.062 55.000 13.81 0.00 41.00 3.27
2497 2577 3.737172 GGCATTGCTCACGCGGTT 61.737 61.111 12.47 0.00 39.65 4.44
2500 2580 1.796151 CATTGCTCACGCGGTTGAT 59.204 52.632 12.47 0.00 39.65 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.330455 AGATGTAGCAAATCTTCGTCTGA 57.670 39.130 0.00 0.00 37.16 3.27
1 2 5.172232 CGTAGATGTAGCAAATCTTCGTCTG 59.828 44.000 11.52 0.00 38.43 3.51
2 3 5.274718 CGTAGATGTAGCAAATCTTCGTCT 58.725 41.667 11.52 0.00 39.01 4.18
3 4 4.441415 CCGTAGATGTAGCAAATCTTCGTC 59.559 45.833 15.70 0.00 40.95 4.20
4 5 4.097437 TCCGTAGATGTAGCAAATCTTCGT 59.903 41.667 15.70 0.00 40.95 3.85
5 6 4.441415 GTCCGTAGATGTAGCAAATCTTCG 59.559 45.833 12.30 12.30 41.70 3.79
6 7 5.348986 TGTCCGTAGATGTAGCAAATCTTC 58.651 41.667 1.73 0.00 35.92 2.87
7 8 5.339008 TGTCCGTAGATGTAGCAAATCTT 57.661 39.130 1.73 0.00 35.92 2.40
8 9 5.339008 TTGTCCGTAGATGTAGCAAATCT 57.661 39.130 2.02 2.02 38.03 2.40
9 10 6.257849 TGATTTGTCCGTAGATGTAGCAAATC 59.742 38.462 15.77 15.77 44.93 2.17
10 11 6.112734 TGATTTGTCCGTAGATGTAGCAAAT 58.887 36.000 0.00 0.00 37.65 2.32
11 12 5.483811 TGATTTGTCCGTAGATGTAGCAAA 58.516 37.500 0.00 0.00 0.00 3.68
12 13 5.079689 TGATTTGTCCGTAGATGTAGCAA 57.920 39.130 0.00 0.00 0.00 3.91
13 14 4.729227 TGATTTGTCCGTAGATGTAGCA 57.271 40.909 0.00 0.00 0.00 3.49
14 15 7.702772 CCTATATGATTTGTCCGTAGATGTAGC 59.297 40.741 0.00 0.00 0.00 3.58
15 16 8.957466 TCCTATATGATTTGTCCGTAGATGTAG 58.043 37.037 0.00 0.00 0.00 2.74
16 17 8.873186 TCCTATATGATTTGTCCGTAGATGTA 57.127 34.615 0.00 0.00 0.00 2.29
17 18 7.776618 TCCTATATGATTTGTCCGTAGATGT 57.223 36.000 0.00 0.00 0.00 3.06
18 19 8.470002 TGATCCTATATGATTTGTCCGTAGATG 58.530 37.037 0.00 0.00 0.00 2.90
19 20 8.595362 TGATCCTATATGATTTGTCCGTAGAT 57.405 34.615 0.00 0.00 0.00 1.98
20 21 8.470002 CATGATCCTATATGATTTGTCCGTAGA 58.530 37.037 0.00 0.00 0.00 2.59
21 22 7.708322 CCATGATCCTATATGATTTGTCCGTAG 59.292 40.741 0.00 0.00 0.00 3.51
22 23 7.180229 ACCATGATCCTATATGATTTGTCCGTA 59.820 37.037 0.00 0.00 0.00 4.02
23 24 6.013379 ACCATGATCCTATATGATTTGTCCGT 60.013 38.462 0.00 0.00 0.00 4.69
24 25 6.409704 ACCATGATCCTATATGATTTGTCCG 58.590 40.000 0.00 0.00 0.00 4.79
25 26 7.335422 GTGACCATGATCCTATATGATTTGTCC 59.665 40.741 0.00 0.00 0.00 4.02
26 27 7.063898 CGTGACCATGATCCTATATGATTTGTC 59.936 40.741 0.00 0.00 0.00 3.18
27 28 6.875726 CGTGACCATGATCCTATATGATTTGT 59.124 38.462 0.00 0.00 0.00 2.83
28 29 6.314648 CCGTGACCATGATCCTATATGATTTG 59.685 42.308 0.00 0.00 0.00 2.32
29 30 6.213397 TCCGTGACCATGATCCTATATGATTT 59.787 38.462 0.00 0.00 0.00 2.17
30 31 5.721480 TCCGTGACCATGATCCTATATGATT 59.279 40.000 0.00 0.00 0.00 2.57
31 32 5.272402 TCCGTGACCATGATCCTATATGAT 58.728 41.667 0.00 0.00 0.00 2.45
32 33 4.672899 TCCGTGACCATGATCCTATATGA 58.327 43.478 0.00 0.00 0.00 2.15
33 34 5.405935 TTCCGTGACCATGATCCTATATG 57.594 43.478 0.00 0.00 0.00 1.78
34 35 5.721480 TCATTCCGTGACCATGATCCTATAT 59.279 40.000 0.00 0.00 0.00 0.86
35 36 5.083821 TCATTCCGTGACCATGATCCTATA 58.916 41.667 0.00 0.00 0.00 1.31
36 37 3.903714 TCATTCCGTGACCATGATCCTAT 59.096 43.478 0.00 0.00 0.00 2.57
37 38 3.304829 TCATTCCGTGACCATGATCCTA 58.695 45.455 0.00 0.00 0.00 2.94
38 39 2.103771 CTCATTCCGTGACCATGATCCT 59.896 50.000 0.00 0.00 32.22 3.24
39 40 2.103094 TCTCATTCCGTGACCATGATCC 59.897 50.000 0.00 0.00 32.22 3.36
40 41 3.459232 TCTCATTCCGTGACCATGATC 57.541 47.619 0.00 0.00 32.22 2.92
41 42 3.495629 CCATCTCATTCCGTGACCATGAT 60.496 47.826 0.00 0.00 32.22 2.45
42 43 2.158914 CCATCTCATTCCGTGACCATGA 60.159 50.000 0.00 0.00 32.22 3.07
43 44 2.216046 CCATCTCATTCCGTGACCATG 58.784 52.381 0.00 0.00 32.22 3.66
44 45 1.475751 GCCATCTCATTCCGTGACCAT 60.476 52.381 0.00 0.00 32.22 3.55
45 46 0.107703 GCCATCTCATTCCGTGACCA 60.108 55.000 0.00 0.00 32.22 4.02
46 47 0.107703 TGCCATCTCATTCCGTGACC 60.108 55.000 0.00 0.00 32.22 4.02
47 48 1.398390 GTTGCCATCTCATTCCGTGAC 59.602 52.381 0.00 0.00 32.22 3.67
48 49 1.003003 TGTTGCCATCTCATTCCGTGA 59.997 47.619 0.00 0.00 35.05 4.35
49 50 1.131126 GTGTTGCCATCTCATTCCGTG 59.869 52.381 0.00 0.00 0.00 4.94
50 51 1.003580 AGTGTTGCCATCTCATTCCGT 59.996 47.619 0.00 0.00 0.00 4.69
51 52 1.742761 AGTGTTGCCATCTCATTCCG 58.257 50.000 0.00 0.00 0.00 4.30
52 53 4.265073 ACTAAGTGTTGCCATCTCATTCC 58.735 43.478 0.00 0.00 0.00 3.01
53 54 5.886960 AACTAAGTGTTGCCATCTCATTC 57.113 39.130 0.00 0.00 37.52 2.67
65 66 2.375509 CCTTCCTCCCCAACTAAGTGTT 59.624 50.000 0.00 0.00 39.92 3.32
66 67 1.985895 CCTTCCTCCCCAACTAAGTGT 59.014 52.381 0.00 0.00 0.00 3.55
67 68 1.282157 CCCTTCCTCCCCAACTAAGTG 59.718 57.143 0.00 0.00 0.00 3.16
68 69 1.670059 CCCTTCCTCCCCAACTAAGT 58.330 55.000 0.00 0.00 0.00 2.24
69 70 0.919710 CCCCTTCCTCCCCAACTAAG 59.080 60.000 0.00 0.00 0.00 2.18
70 71 0.551624 CCCCCTTCCTCCCCAACTAA 60.552 60.000 0.00 0.00 0.00 2.24
71 72 1.084084 CCCCCTTCCTCCCCAACTA 59.916 63.158 0.00 0.00 0.00 2.24
72 73 2.204306 CCCCCTTCCTCCCCAACT 60.204 66.667 0.00 0.00 0.00 3.16
73 74 4.062032 GCCCCCTTCCTCCCCAAC 62.062 72.222 0.00 0.00 0.00 3.77
88 89 0.629058 TTGAATCTTAGGGGTGGGCC 59.371 55.000 0.00 0.00 0.00 5.80
89 90 1.410224 CCTTGAATCTTAGGGGTGGGC 60.410 57.143 0.00 0.00 0.00 5.36
90 91 1.215423 CCCTTGAATCTTAGGGGTGGG 59.785 57.143 11.60 0.00 46.21 4.61
91 92 2.736670 CCCTTGAATCTTAGGGGTGG 57.263 55.000 11.60 0.00 46.21 4.61
96 97 0.837272 TCCGCCCCTTGAATCTTAGG 59.163 55.000 0.00 0.00 0.00 2.69
97 98 1.486726 AGTCCGCCCCTTGAATCTTAG 59.513 52.381 0.00 0.00 0.00 2.18
98 99 1.580059 AGTCCGCCCCTTGAATCTTA 58.420 50.000 0.00 0.00 0.00 2.10
99 100 1.486726 CTAGTCCGCCCCTTGAATCTT 59.513 52.381 0.00 0.00 0.00 2.40
100 101 1.123928 CTAGTCCGCCCCTTGAATCT 58.876 55.000 0.00 0.00 0.00 2.40
101 102 0.831307 ACTAGTCCGCCCCTTGAATC 59.169 55.000 0.00 0.00 0.00 2.52
102 103 0.541863 CACTAGTCCGCCCCTTGAAT 59.458 55.000 0.00 0.00 0.00 2.57
103 104 1.550130 CCACTAGTCCGCCCCTTGAA 61.550 60.000 0.00 0.00 0.00 2.69
104 105 1.987855 CCACTAGTCCGCCCCTTGA 60.988 63.158 0.00 0.00 0.00 3.02
105 106 2.584608 CCACTAGTCCGCCCCTTG 59.415 66.667 0.00 0.00 0.00 3.61
106 107 2.687566 CCCACTAGTCCGCCCCTT 60.688 66.667 0.00 0.00 0.00 3.95
107 108 3.680196 TCCCACTAGTCCGCCCCT 61.680 66.667 0.00 0.00 0.00 4.79
108 109 2.948801 ATCTCCCACTAGTCCGCCCC 62.949 65.000 0.00 0.00 0.00 5.80
109 110 1.049289 AATCTCCCACTAGTCCGCCC 61.049 60.000 0.00 0.00 0.00 6.13
110 111 0.105039 CAATCTCCCACTAGTCCGCC 59.895 60.000 0.00 0.00 0.00 6.13
111 112 0.105039 CCAATCTCCCACTAGTCCGC 59.895 60.000 0.00 0.00 0.00 5.54
112 113 0.105039 GCCAATCTCCCACTAGTCCG 59.895 60.000 0.00 0.00 0.00 4.79
113 114 1.501582 AGCCAATCTCCCACTAGTCC 58.498 55.000 0.00 0.00 0.00 3.85
114 115 2.630580 CCTAGCCAATCTCCCACTAGTC 59.369 54.545 0.00 0.00 30.56 2.59
115 116 2.683768 CCTAGCCAATCTCCCACTAGT 58.316 52.381 0.00 0.00 30.56 2.57
116 117 1.974236 CCCTAGCCAATCTCCCACTAG 59.026 57.143 0.00 0.00 0.00 2.57
117 118 1.578703 TCCCTAGCCAATCTCCCACTA 59.421 52.381 0.00 0.00 0.00 2.74
118 119 0.343372 TCCCTAGCCAATCTCCCACT 59.657 55.000 0.00 0.00 0.00 4.00
119 120 0.761802 CTCCCTAGCCAATCTCCCAC 59.238 60.000 0.00 0.00 0.00 4.61
120 121 0.642156 TCTCCCTAGCCAATCTCCCA 59.358 55.000 0.00 0.00 0.00 4.37
121 122 1.133009 TCTCTCCCTAGCCAATCTCCC 60.133 57.143 0.00 0.00 0.00 4.30
122 123 2.247358 CTCTCTCCCTAGCCAATCTCC 58.753 57.143 0.00 0.00 0.00 3.71
123 124 2.890945 GACTCTCTCCCTAGCCAATCTC 59.109 54.545 0.00 0.00 0.00 2.75
124 125 2.425683 GGACTCTCTCCCTAGCCAATCT 60.426 54.545 0.00 0.00 31.83 2.40
125 126 1.967779 GGACTCTCTCCCTAGCCAATC 59.032 57.143 0.00 0.00 31.83 2.67
126 127 1.292242 TGGACTCTCTCCCTAGCCAAT 59.708 52.381 0.00 0.00 38.49 3.16
127 128 0.710588 TGGACTCTCTCCCTAGCCAA 59.289 55.000 0.00 0.00 38.49 4.52
128 129 0.937441 ATGGACTCTCTCCCTAGCCA 59.063 55.000 0.00 0.00 38.49 4.75
129 130 2.982339 TATGGACTCTCTCCCTAGCC 57.018 55.000 0.00 0.00 38.49 3.93
130 131 2.560981 GCTTATGGACTCTCTCCCTAGC 59.439 54.545 0.00 0.00 38.49 3.42
131 132 3.838565 TGCTTATGGACTCTCTCCCTAG 58.161 50.000 0.00 0.00 38.49 3.02
132 133 3.973472 TGCTTATGGACTCTCTCCCTA 57.027 47.619 0.00 0.00 38.49 3.53
133 134 2.856760 TGCTTATGGACTCTCTCCCT 57.143 50.000 0.00 0.00 38.49 4.20
134 135 3.914426 TTTGCTTATGGACTCTCTCCC 57.086 47.619 0.00 0.00 38.49 4.30
135 136 5.007136 CGAAATTTGCTTATGGACTCTCTCC 59.993 44.000 0.00 0.00 39.97 3.71
136 137 5.007136 CCGAAATTTGCTTATGGACTCTCTC 59.993 44.000 0.00 0.00 0.00 3.20
137 138 4.878397 CCGAAATTTGCTTATGGACTCTCT 59.122 41.667 0.00 0.00 0.00 3.10
138 139 4.636206 ACCGAAATTTGCTTATGGACTCTC 59.364 41.667 0.00 0.00 0.00 3.20
139 140 4.396166 CACCGAAATTTGCTTATGGACTCT 59.604 41.667 0.00 0.00 0.00 3.24
140 141 4.156008 ACACCGAAATTTGCTTATGGACTC 59.844 41.667 0.00 0.00 0.00 3.36
141 142 4.079253 ACACCGAAATTTGCTTATGGACT 58.921 39.130 0.00 0.00 0.00 3.85
142 143 4.434713 ACACCGAAATTTGCTTATGGAC 57.565 40.909 0.00 0.00 0.00 4.02
143 144 5.492895 TCTACACCGAAATTTGCTTATGGA 58.507 37.500 0.00 0.00 0.00 3.41
144 145 5.354234 ACTCTACACCGAAATTTGCTTATGG 59.646 40.000 0.00 0.00 0.00 2.74
145 146 6.422776 ACTCTACACCGAAATTTGCTTATG 57.577 37.500 0.00 0.00 0.00 1.90
146 147 8.732746 ATAACTCTACACCGAAATTTGCTTAT 57.267 30.769 0.00 0.00 0.00 1.73
147 148 8.447833 CAATAACTCTACACCGAAATTTGCTTA 58.552 33.333 0.00 0.00 0.00 3.09
148 149 7.040686 ACAATAACTCTACACCGAAATTTGCTT 60.041 33.333 0.00 0.00 0.00 3.91
149 150 6.430000 ACAATAACTCTACACCGAAATTTGCT 59.570 34.615 0.00 0.00 0.00 3.91
150 151 6.608610 ACAATAACTCTACACCGAAATTTGC 58.391 36.000 0.00 0.00 0.00 3.68
151 152 8.901748 CAAACAATAACTCTACACCGAAATTTG 58.098 33.333 0.00 0.00 0.00 2.32
152 153 8.842280 TCAAACAATAACTCTACACCGAAATTT 58.158 29.630 0.00 0.00 0.00 1.82
153 154 8.385898 TCAAACAATAACTCTACACCGAAATT 57.614 30.769 0.00 0.00 0.00 1.82
154 155 7.876068 TCTCAAACAATAACTCTACACCGAAAT 59.124 33.333 0.00 0.00 0.00 2.17
155 156 7.211573 TCTCAAACAATAACTCTACACCGAAA 58.788 34.615 0.00 0.00 0.00 3.46
156 157 6.751157 TCTCAAACAATAACTCTACACCGAA 58.249 36.000 0.00 0.00 0.00 4.30
157 158 6.335471 TCTCAAACAATAACTCTACACCGA 57.665 37.500 0.00 0.00 0.00 4.69
158 159 6.590292 ACATCTCAAACAATAACTCTACACCG 59.410 38.462 0.00 0.00 0.00 4.94
159 160 7.387948 ACACATCTCAAACAATAACTCTACACC 59.612 37.037 0.00 0.00 0.00 4.16
160 161 8.223769 CACACATCTCAAACAATAACTCTACAC 58.776 37.037 0.00 0.00 0.00 2.90
161 162 7.387673 CCACACATCTCAAACAATAACTCTACA 59.612 37.037 0.00 0.00 0.00 2.74
162 163 7.602644 TCCACACATCTCAAACAATAACTCTAC 59.397 37.037 0.00 0.00 0.00 2.59
163 164 7.602644 GTCCACACATCTCAAACAATAACTCTA 59.397 37.037 0.00 0.00 0.00 2.43
164 165 6.428159 GTCCACACATCTCAAACAATAACTCT 59.572 38.462 0.00 0.00 0.00 3.24
165 166 6.603095 GTCCACACATCTCAAACAATAACTC 58.397 40.000 0.00 0.00 0.00 3.01
166 167 5.179368 CGTCCACACATCTCAAACAATAACT 59.821 40.000 0.00 0.00 0.00 2.24
167 168 5.049680 ACGTCCACACATCTCAAACAATAAC 60.050 40.000 0.00 0.00 0.00 1.89
168 169 5.049749 CACGTCCACACATCTCAAACAATAA 60.050 40.000 0.00 0.00 0.00 1.40
169 170 4.450757 CACGTCCACACATCTCAAACAATA 59.549 41.667 0.00 0.00 0.00 1.90
170 171 3.250762 CACGTCCACACATCTCAAACAAT 59.749 43.478 0.00 0.00 0.00 2.71
171 172 2.611751 CACGTCCACACATCTCAAACAA 59.388 45.455 0.00 0.00 0.00 2.83
172 173 2.209273 CACGTCCACACATCTCAAACA 58.791 47.619 0.00 0.00 0.00 2.83
173 174 2.032894 CACACGTCCACACATCTCAAAC 60.033 50.000 0.00 0.00 0.00 2.93
174 175 2.209273 CACACGTCCACACATCTCAAA 58.791 47.619 0.00 0.00 0.00 2.69
175 176 1.540146 CCACACGTCCACACATCTCAA 60.540 52.381 0.00 0.00 0.00 3.02
176 177 0.033366 CCACACGTCCACACATCTCA 59.967 55.000 0.00 0.00 0.00 3.27
177 178 0.033504 ACCACACGTCCACACATCTC 59.966 55.000 0.00 0.00 0.00 2.75
178 179 0.468226 AACCACACGTCCACACATCT 59.532 50.000 0.00 0.00 0.00 2.90
179 180 0.586319 CAACCACACGTCCACACATC 59.414 55.000 0.00 0.00 0.00 3.06
180 181 0.107410 ACAACCACACGTCCACACAT 60.107 50.000 0.00 0.00 0.00 3.21
181 182 1.021920 CACAACCACACGTCCACACA 61.022 55.000 0.00 0.00 0.00 3.72
182 183 1.022451 ACACAACCACACGTCCACAC 61.022 55.000 0.00 0.00 0.00 3.82
183 184 1.021920 CACACAACCACACGTCCACA 61.022 55.000 0.00 0.00 0.00 4.17
184 185 0.741574 TCACACAACCACACGTCCAC 60.742 55.000 0.00 0.00 0.00 4.02
185 186 0.741574 GTCACACAACCACACGTCCA 60.742 55.000 0.00 0.00 0.00 4.02
186 187 0.741574 TGTCACACAACCACACGTCC 60.742 55.000 0.00 0.00 0.00 4.79
187 188 1.295792 ATGTCACACAACCACACGTC 58.704 50.000 0.00 0.00 0.00 4.34
188 189 2.605837 TATGTCACACAACCACACGT 57.394 45.000 0.00 0.00 0.00 4.49
189 190 3.369756 GGTATATGTCACACAACCACACG 59.630 47.826 1.01 0.00 29.27 4.49
190 191 4.391830 CAGGTATATGTCACACAACCACAC 59.608 45.833 7.58 0.00 30.78 3.82
191 192 4.564613 CCAGGTATATGTCACACAACCACA 60.565 45.833 7.58 0.00 30.78 4.17
192 193 3.938963 CCAGGTATATGTCACACAACCAC 59.061 47.826 7.58 0.00 30.78 4.16
193 194 3.054728 CCCAGGTATATGTCACACAACCA 60.055 47.826 7.58 0.00 30.78 3.67
194 195 3.541632 CCCAGGTATATGTCACACAACC 58.458 50.000 0.00 0.00 28.94 3.77
195 196 2.943033 GCCCAGGTATATGTCACACAAC 59.057 50.000 0.00 0.00 0.00 3.32
196 197 2.573915 TGCCCAGGTATATGTCACACAA 59.426 45.455 0.00 0.00 0.00 3.33
197 198 2.192263 TGCCCAGGTATATGTCACACA 58.808 47.619 0.00 0.00 0.00 3.72
198 199 3.275617 TTGCCCAGGTATATGTCACAC 57.724 47.619 0.00 0.00 0.00 3.82
199 200 4.013728 GTTTTGCCCAGGTATATGTCACA 58.986 43.478 0.00 0.00 0.00 3.58
200 201 4.270008 AGTTTTGCCCAGGTATATGTCAC 58.730 43.478 0.00 0.00 0.00 3.67
201 202 4.523083 GAGTTTTGCCCAGGTATATGTCA 58.477 43.478 0.00 0.00 0.00 3.58
202 203 3.560068 CGAGTTTTGCCCAGGTATATGTC 59.440 47.826 0.00 0.00 0.00 3.06
203 204 3.541632 CGAGTTTTGCCCAGGTATATGT 58.458 45.455 0.00 0.00 0.00 2.29
204 205 2.878406 CCGAGTTTTGCCCAGGTATATG 59.122 50.000 0.00 0.00 0.00 1.78
205 206 2.158667 CCCGAGTTTTGCCCAGGTATAT 60.159 50.000 0.00 0.00 0.00 0.86
206 207 1.210967 CCCGAGTTTTGCCCAGGTATA 59.789 52.381 0.00 0.00 0.00 1.47
207 208 0.034477 CCCGAGTTTTGCCCAGGTAT 60.034 55.000 0.00 0.00 0.00 2.73
208 209 1.377229 CCCGAGTTTTGCCCAGGTA 59.623 57.895 0.00 0.00 0.00 3.08
209 210 2.115266 CCCGAGTTTTGCCCAGGT 59.885 61.111 0.00 0.00 0.00 4.00
210 211 3.373565 GCCCGAGTTTTGCCCAGG 61.374 66.667 0.00 0.00 0.00 4.45
211 212 3.373565 GGCCCGAGTTTTGCCCAG 61.374 66.667 0.00 0.00 39.30 4.45
231 232 3.449227 GGCTTTGTTAGGCCCGGC 61.449 66.667 0.00 0.00 43.40 6.13
237 238 0.804989 CTGCTTCGGGCTTTGTTAGG 59.195 55.000 3.33 0.00 42.39 2.69
238 239 1.808411 TCTGCTTCGGGCTTTGTTAG 58.192 50.000 3.33 0.00 42.39 2.34
239 240 2.264005 TTCTGCTTCGGGCTTTGTTA 57.736 45.000 3.33 0.00 42.39 2.41
240 241 1.398692 TTTCTGCTTCGGGCTTTGTT 58.601 45.000 3.33 0.00 42.39 2.83
241 242 1.067060 GTTTTCTGCTTCGGGCTTTGT 59.933 47.619 3.33 0.00 42.39 2.83
242 243 1.338020 AGTTTTCTGCTTCGGGCTTTG 59.662 47.619 3.33 0.00 42.39 2.77
243 244 1.692411 AGTTTTCTGCTTCGGGCTTT 58.308 45.000 3.33 0.00 42.39 3.51
244 245 1.692411 AAGTTTTCTGCTTCGGGCTT 58.308 45.000 3.33 0.00 42.39 4.35
245 246 2.427506 CTAAGTTTTCTGCTTCGGGCT 58.572 47.619 3.33 0.00 42.39 5.19
246 247 1.468914 CCTAAGTTTTCTGCTTCGGGC 59.531 52.381 0.00 0.00 42.22 6.13
247 248 1.468914 GCCTAAGTTTTCTGCTTCGGG 59.531 52.381 0.00 0.00 31.72 5.14
248 249 1.468914 GGCCTAAGTTTTCTGCTTCGG 59.531 52.381 0.00 0.00 33.50 4.30
249 250 1.468914 GGGCCTAAGTTTTCTGCTTCG 59.531 52.381 0.84 0.00 0.00 3.79
250 251 1.468914 CGGGCCTAAGTTTTCTGCTTC 59.531 52.381 0.84 0.00 0.00 3.86
251 252 1.534729 CGGGCCTAAGTTTTCTGCTT 58.465 50.000 0.84 0.00 0.00 3.91
252 253 0.322546 CCGGGCCTAAGTTTTCTGCT 60.323 55.000 0.84 0.00 0.00 4.24
253 254 1.313091 CCCGGGCCTAAGTTTTCTGC 61.313 60.000 8.08 0.00 0.00 4.26
254 255 1.313091 GCCCGGGCCTAAGTTTTCTG 61.313 60.000 36.64 0.00 34.56 3.02
255 256 1.001269 GCCCGGGCCTAAGTTTTCT 60.001 57.895 36.64 0.00 34.56 2.52
256 257 0.611062 AAGCCCGGGCCTAAGTTTTC 60.611 55.000 41.72 10.89 43.17 2.29
257 258 0.898326 CAAGCCCGGGCCTAAGTTTT 60.898 55.000 41.72 24.56 43.17 2.43
258 259 1.304134 CAAGCCCGGGCCTAAGTTT 60.304 57.895 41.72 25.35 43.17 2.66
259 260 2.355115 CAAGCCCGGGCCTAAGTT 59.645 61.111 41.72 26.15 43.17 2.66
260 261 3.728373 CCAAGCCCGGGCCTAAGT 61.728 66.667 41.72 21.28 43.17 2.24
279 280 0.034477 AAACTAGGCCCAATGGTCGG 60.034 55.000 0.00 0.00 42.85 4.79
280 281 1.743394 GAAAACTAGGCCCAATGGTCG 59.257 52.381 0.00 0.00 42.85 4.79
281 282 2.755103 CTGAAAACTAGGCCCAATGGTC 59.245 50.000 0.00 0.00 36.05 4.02
282 283 2.557452 CCTGAAAACTAGGCCCAATGGT 60.557 50.000 0.00 0.00 0.00 3.55
283 284 2.102578 CCTGAAAACTAGGCCCAATGG 58.897 52.381 0.00 0.00 0.00 3.16
291 292 1.177401 GCTTGGGCCTGAAAACTAGG 58.823 55.000 4.53 0.00 38.39 3.02
292 293 2.087646 GAGCTTGGGCCTGAAAACTAG 58.912 52.381 4.53 0.00 39.73 2.57
293 294 1.423541 TGAGCTTGGGCCTGAAAACTA 59.576 47.619 4.53 0.00 39.73 2.24
294 295 0.185901 TGAGCTTGGGCCTGAAAACT 59.814 50.000 4.53 0.00 39.73 2.66
295 296 0.600057 CTGAGCTTGGGCCTGAAAAC 59.400 55.000 4.53 0.00 39.73 2.43
296 297 1.181098 GCTGAGCTTGGGCCTGAAAA 61.181 55.000 4.53 0.00 39.73 2.29
297 298 1.604593 GCTGAGCTTGGGCCTGAAA 60.605 57.895 4.53 0.00 39.73 2.69
298 299 2.034687 GCTGAGCTTGGGCCTGAA 59.965 61.111 4.53 0.00 39.73 3.02
299 300 4.039092 GGCTGAGCTTGGGCCTGA 62.039 66.667 3.72 0.00 42.31 3.86
302 303 4.453892 ATGGGCTGAGCTTGGGCC 62.454 66.667 20.34 20.34 46.56 5.80
303 304 2.832201 GATGGGCTGAGCTTGGGC 60.832 66.667 3.72 0.00 39.06 5.36
304 305 1.453379 CTGATGGGCTGAGCTTGGG 60.453 63.158 3.72 0.00 0.00 4.12
305 306 0.747283 GACTGATGGGCTGAGCTTGG 60.747 60.000 3.72 0.00 0.00 3.61
306 307 0.035725 TGACTGATGGGCTGAGCTTG 60.036 55.000 3.72 0.00 0.00 4.01
307 308 0.694771 TTGACTGATGGGCTGAGCTT 59.305 50.000 3.72 0.00 0.00 3.74
308 309 0.694771 TTTGACTGATGGGCTGAGCT 59.305 50.000 3.72 0.00 0.00 4.09
309 310 1.538047 TTTTGACTGATGGGCTGAGC 58.462 50.000 0.00 0.00 0.00 4.26
310 311 2.094854 GCTTTTTGACTGATGGGCTGAG 60.095 50.000 0.00 0.00 0.00 3.35
311 312 1.888512 GCTTTTTGACTGATGGGCTGA 59.111 47.619 0.00 0.00 0.00 4.26
312 313 1.067354 GGCTTTTTGACTGATGGGCTG 60.067 52.381 0.00 0.00 0.00 4.85
313 314 1.260544 GGCTTTTTGACTGATGGGCT 58.739 50.000 0.00 0.00 0.00 5.19
314 315 0.247460 GGGCTTTTTGACTGATGGGC 59.753 55.000 0.00 0.00 0.00 5.36
315 316 0.527565 CGGGCTTTTTGACTGATGGG 59.472 55.000 0.00 0.00 29.21 4.00
316 317 1.200020 GACGGGCTTTTTGACTGATGG 59.800 52.381 0.00 0.00 33.22 3.51
317 318 2.154462 AGACGGGCTTTTTGACTGATG 58.846 47.619 0.00 0.00 33.22 3.07
318 319 2.568623 AGACGGGCTTTTTGACTGAT 57.431 45.000 0.00 0.00 33.22 2.90
319 320 2.870435 GCTAGACGGGCTTTTTGACTGA 60.870 50.000 0.00 0.00 33.22 3.41
320 321 1.464997 GCTAGACGGGCTTTTTGACTG 59.535 52.381 0.00 0.00 35.74 3.51
321 322 1.610886 GGCTAGACGGGCTTTTTGACT 60.611 52.381 0.00 0.00 0.00 3.41
322 323 0.803117 GGCTAGACGGGCTTTTTGAC 59.197 55.000 0.00 0.00 0.00 3.18
323 324 0.690762 AGGCTAGACGGGCTTTTTGA 59.309 50.000 0.00 0.00 39.07 2.69
324 325 1.087501 GAGGCTAGACGGGCTTTTTG 58.912 55.000 0.00 0.00 42.23 2.44
325 326 0.391263 CGAGGCTAGACGGGCTTTTT 60.391 55.000 0.00 0.00 42.23 1.94
326 327 1.218316 CGAGGCTAGACGGGCTTTT 59.782 57.895 0.00 0.00 42.23 2.27
327 328 2.722201 CCGAGGCTAGACGGGCTTT 61.722 63.158 13.17 0.00 44.59 3.51
328 329 3.148279 CCGAGGCTAGACGGGCTT 61.148 66.667 13.17 0.00 44.59 4.35
333 334 3.812019 ACGTGCCGAGGCTAGACG 61.812 66.667 19.38 19.38 41.60 4.18
334 335 2.202623 CACGTGCCGAGGCTAGAC 60.203 66.667 15.75 4.41 42.51 2.59
335 336 4.129737 GCACGTGCCGAGGCTAGA 62.130 66.667 30.12 0.00 42.51 2.43
345 346 1.519408 TTTAAGGAAGAGGCACGTGC 58.481 50.000 32.15 32.15 41.14 5.34
346 347 3.670627 GCAATTTAAGGAAGAGGCACGTG 60.671 47.826 12.28 12.28 0.00 4.49
347 348 2.488153 GCAATTTAAGGAAGAGGCACGT 59.512 45.455 0.00 0.00 0.00 4.49
348 349 2.487762 TGCAATTTAAGGAAGAGGCACG 59.512 45.455 0.00 0.00 0.00 5.34
349 350 4.519540 TTGCAATTTAAGGAAGAGGCAC 57.480 40.909 0.00 0.00 0.00 5.01
350 351 5.743636 ATTTGCAATTTAAGGAAGAGGCA 57.256 34.783 0.00 0.00 0.00 4.75
351 352 6.630071 TGTATTTGCAATTTAAGGAAGAGGC 58.370 36.000 0.00 0.00 0.00 4.70
352 353 8.087750 TGTTGTATTTGCAATTTAAGGAAGAGG 58.912 33.333 0.00 0.00 0.00 3.69
353 354 9.474920 TTGTTGTATTTGCAATTTAAGGAAGAG 57.525 29.630 0.00 0.00 0.00 2.85
354 355 9.474920 CTTGTTGTATTTGCAATTTAAGGAAGA 57.525 29.630 0.00 0.00 0.00 2.87
355 356 8.223100 GCTTGTTGTATTTGCAATTTAAGGAAG 58.777 33.333 0.00 0.14 0.00 3.46
356 357 7.172361 GGCTTGTTGTATTTGCAATTTAAGGAA 59.828 33.333 0.00 0.00 0.00 3.36
357 358 6.648725 GGCTTGTTGTATTTGCAATTTAAGGA 59.351 34.615 0.00 0.00 0.00 3.36
358 359 6.426328 TGGCTTGTTGTATTTGCAATTTAAGG 59.574 34.615 0.00 0.00 0.00 2.69
359 360 7.418840 TGGCTTGTTGTATTTGCAATTTAAG 57.581 32.000 0.00 0.35 0.00 1.85
360 361 7.792374 TTGGCTTGTTGTATTTGCAATTTAA 57.208 28.000 0.00 0.00 0.00 1.52
361 362 7.519649 GCTTTGGCTTGTTGTATTTGCAATTTA 60.520 33.333 0.00 0.00 35.22 1.40
362 363 6.690194 TTTGGCTTGTTGTATTTGCAATTT 57.310 29.167 0.00 0.00 0.00 1.82
363 364 5.277925 GCTTTGGCTTGTTGTATTTGCAATT 60.278 36.000 0.00 0.00 35.22 2.32
364 365 4.213906 GCTTTGGCTTGTTGTATTTGCAAT 59.786 37.500 0.00 0.00 35.22 3.56
365 366 3.559242 GCTTTGGCTTGTTGTATTTGCAA 59.441 39.130 0.00 0.00 35.22 4.08
366 367 3.129871 GCTTTGGCTTGTTGTATTTGCA 58.870 40.909 0.00 0.00 35.22 4.08
367 368 2.480037 GGCTTTGGCTTGTTGTATTTGC 59.520 45.455 0.00 0.00 38.73 3.68
368 369 3.742369 CAGGCTTTGGCTTGTTGTATTTG 59.258 43.478 0.00 0.00 40.11 2.32
369 370 3.244181 CCAGGCTTTGGCTTGTTGTATTT 60.244 43.478 0.00 0.00 42.88 1.40
370 371 2.299867 CCAGGCTTTGGCTTGTTGTATT 59.700 45.455 0.00 0.00 42.88 1.89
371 372 1.895131 CCAGGCTTTGGCTTGTTGTAT 59.105 47.619 0.00 0.00 42.88 2.29
372 373 1.327303 CCAGGCTTTGGCTTGTTGTA 58.673 50.000 0.00 0.00 42.88 2.41
373 374 2.126951 CCAGGCTTTGGCTTGTTGT 58.873 52.632 0.00 0.00 42.88 3.32
395 396 0.608035 TTGAACTTCATGGTCGGGCC 60.608 55.000 0.00 0.00 34.43 5.80
396 397 1.243902 TTTGAACTTCATGGTCGGGC 58.756 50.000 0.00 0.00 34.43 6.13
397 398 3.317993 AGTTTTTGAACTTCATGGTCGGG 59.682 43.478 0.00 0.00 34.43 5.14
398 399 4.568152 AGTTTTTGAACTTCATGGTCGG 57.432 40.909 0.00 0.00 34.43 4.79
399 400 5.689819 CCTAGTTTTTGAACTTCATGGTCG 58.310 41.667 0.00 0.00 34.43 4.79
400 401 5.461526 GCCTAGTTTTTGAACTTCATGGTC 58.538 41.667 0.00 0.00 34.37 4.02
401 402 4.280929 GGCCTAGTTTTTGAACTTCATGGT 59.719 41.667 0.00 0.00 34.37 3.55
402 403 4.321974 GGGCCTAGTTTTTGAACTTCATGG 60.322 45.833 0.84 0.00 34.37 3.66
403 404 4.280677 TGGGCCTAGTTTTTGAACTTCATG 59.719 41.667 4.53 0.00 34.37 3.07
404 405 4.479158 TGGGCCTAGTTTTTGAACTTCAT 58.521 39.130 4.53 0.00 34.37 2.57
405 406 3.888930 CTGGGCCTAGTTTTTGAACTTCA 59.111 43.478 8.21 0.00 34.37 3.02
406 407 3.255888 CCTGGGCCTAGTTTTTGAACTTC 59.744 47.826 15.86 0.00 34.37 3.01
407 408 3.230976 CCTGGGCCTAGTTTTTGAACTT 58.769 45.455 15.86 0.00 34.37 2.66
408 409 2.876581 CCTGGGCCTAGTTTTTGAACT 58.123 47.619 15.86 0.00 36.82 3.01
409 410 1.272490 GCCTGGGCCTAGTTTTTGAAC 59.728 52.381 15.86 0.00 34.56 3.18
410 411 1.627864 GCCTGGGCCTAGTTTTTGAA 58.372 50.000 15.86 0.00 34.56 2.69
411 412 3.356814 GCCTGGGCCTAGTTTTTGA 57.643 52.632 15.86 0.00 34.56 2.69
454 455 4.157120 ATACGCCACTGCCCGGAC 62.157 66.667 0.73 0.00 0.00 4.79
455 456 2.914756 TAGATACGCCACTGCCCGGA 62.915 60.000 0.73 0.00 0.00 5.14
456 457 2.421877 CTAGATACGCCACTGCCCGG 62.422 65.000 0.00 0.00 0.00 5.73
457 458 1.007271 CTAGATACGCCACTGCCCG 60.007 63.158 0.00 0.00 0.00 6.13
458 459 1.367840 CCTAGATACGCCACTGCCC 59.632 63.158 0.00 0.00 0.00 5.36
459 460 1.367840 CCCTAGATACGCCACTGCC 59.632 63.158 0.00 0.00 0.00 4.85
460 461 1.367840 CCCCTAGATACGCCACTGC 59.632 63.158 0.00 0.00 0.00 4.40
461 462 0.759436 ACCCCCTAGATACGCCACTG 60.759 60.000 0.00 0.00 0.00 3.66
462 463 0.759436 CACCCCCTAGATACGCCACT 60.759 60.000 0.00 0.00 0.00 4.00
463 464 1.746517 CACCCCCTAGATACGCCAC 59.253 63.158 0.00 0.00 0.00 5.01
464 465 1.458777 CCACCCCCTAGATACGCCA 60.459 63.158 0.00 0.00 0.00 5.69
465 466 1.152398 TCCACCCCCTAGATACGCC 60.152 63.158 0.00 0.00 0.00 5.68
466 467 0.757935 TGTCCACCCCCTAGATACGC 60.758 60.000 0.00 0.00 0.00 4.42
467 468 1.329256 CTGTCCACCCCCTAGATACG 58.671 60.000 0.00 0.00 0.00 3.06
468 469 1.718280 CCTGTCCACCCCCTAGATAC 58.282 60.000 0.00 0.00 0.00 2.24
469 470 0.566176 CCCTGTCCACCCCCTAGATA 59.434 60.000 0.00 0.00 0.00 1.98
470 471 1.318380 CCCTGTCCACCCCCTAGAT 59.682 63.158 0.00 0.00 0.00 1.98
471 472 2.181773 ACCCTGTCCACCCCCTAGA 61.182 63.158 0.00 0.00 0.00 2.43
472 473 1.995626 CACCCTGTCCACCCCCTAG 60.996 68.421 0.00 0.00 0.00 3.02
473 474 2.124085 CACCCTGTCCACCCCCTA 59.876 66.667 0.00 0.00 0.00 3.53
476 477 3.647771 GACCACCCTGTCCACCCC 61.648 72.222 0.00 0.00 0.00 4.95
482 483 1.299976 GTCCATGGACCACCCTGTC 59.700 63.158 31.37 5.53 39.08 3.51
483 484 3.495729 GTCCATGGACCACCCTGT 58.504 61.111 31.37 0.00 39.08 4.00
494 495 2.102578 GAAATTCCAGGGTGGTCCATG 58.897 52.381 0.00 0.00 44.12 3.66
495 496 1.007118 GGAAATTCCAGGGTGGTCCAT 59.993 52.381 7.23 0.00 39.03 3.41
496 497 0.407918 GGAAATTCCAGGGTGGTCCA 59.592 55.000 7.23 0.00 39.03 4.02
497 498 0.324368 GGGAAATTCCAGGGTGGTCC 60.324 60.000 14.68 0.00 38.64 4.46
498 499 0.324368 GGGGAAATTCCAGGGTGGTC 60.324 60.000 14.68 0.00 38.64 4.02
499 500 1.077298 TGGGGAAATTCCAGGGTGGT 61.077 55.000 14.68 0.00 38.64 4.16
500 501 0.339510 ATGGGGAAATTCCAGGGTGG 59.660 55.000 14.68 0.00 38.64 4.61
501 502 3.396685 TTATGGGGAAATTCCAGGGTG 57.603 47.619 14.68 0.00 38.64 4.61
502 503 5.966968 ATATTATGGGGAAATTCCAGGGT 57.033 39.130 14.68 0.00 38.64 4.34
567 568 9.111613 CCACCAATGCAAAATATTCACATAAAT 57.888 29.630 0.00 0.00 0.00 1.40
568 569 8.316946 TCCACCAATGCAAAATATTCACATAAA 58.683 29.630 0.00 0.00 0.00 1.40
569 570 7.763528 GTCCACCAATGCAAAATATTCACATAA 59.236 33.333 0.00 0.00 0.00 1.90
570 571 7.264221 GTCCACCAATGCAAAATATTCACATA 58.736 34.615 0.00 0.00 0.00 2.29
571 572 6.108015 GTCCACCAATGCAAAATATTCACAT 58.892 36.000 0.00 0.00 0.00 3.21
572 573 5.477510 GTCCACCAATGCAAAATATTCACA 58.522 37.500 0.00 0.00 0.00 3.58
573 574 4.869861 GGTCCACCAATGCAAAATATTCAC 59.130 41.667 0.00 0.00 35.64 3.18
574 575 4.529769 TGGTCCACCAATGCAAAATATTCA 59.470 37.500 0.00 0.00 44.35 2.57
575 576 5.083533 TGGTCCACCAATGCAAAATATTC 57.916 39.130 0.00 0.00 44.35 1.75
590 591 2.361610 CATGCCAGGGTGGTCCAC 60.362 66.667 14.13 14.13 40.46 4.02
591 592 2.468868 AACATGCCAGGGTGGTCCA 61.469 57.895 0.00 0.00 40.46 4.02
592 593 1.978617 CAACATGCCAGGGTGGTCC 60.979 63.158 0.00 0.00 40.46 4.46
593 594 1.978617 CCAACATGCCAGGGTGGTC 60.979 63.158 4.99 0.00 40.46 4.02
594 595 2.118076 CCAACATGCCAGGGTGGT 59.882 61.111 4.99 0.00 40.46 4.16
595 596 2.681064 CCCAACATGCCAGGGTGG 60.681 66.667 6.42 6.42 41.55 4.61
596 597 2.497792 TAGCCCAACATGCCAGGGTG 62.498 60.000 16.46 0.00 44.69 4.61
597 598 2.215451 CTAGCCCAACATGCCAGGGT 62.215 60.000 16.46 11.28 44.69 4.34
598 599 1.454479 CTAGCCCAACATGCCAGGG 60.454 63.158 12.20 12.20 45.68 4.45
599 600 2.123428 GCTAGCCCAACATGCCAGG 61.123 63.158 2.29 0.00 0.00 4.45
600 601 0.181114 TAGCTAGCCCAACATGCCAG 59.819 55.000 12.13 0.00 0.00 4.85
601 602 0.107214 GTAGCTAGCCCAACATGCCA 60.107 55.000 12.13 0.00 0.00 4.92
602 603 1.160329 CGTAGCTAGCCCAACATGCC 61.160 60.000 12.13 0.00 0.00 4.40
603 604 2.311294 CGTAGCTAGCCCAACATGC 58.689 57.895 12.13 0.00 0.00 4.06
644 645 0.693049 GGACTATACCTGGCCATGGG 59.307 60.000 20.97 16.10 0.00 4.00
645 646 0.321671 CGGACTATACCTGGCCATGG 59.678 60.000 5.51 13.05 0.00 3.66
646 647 1.000955 GTCGGACTATACCTGGCCATG 59.999 57.143 5.51 6.06 0.00 3.66
647 648 1.339097 GTCGGACTATACCTGGCCAT 58.661 55.000 5.51 0.00 0.00 4.40
648 649 0.032912 TGTCGGACTATACCTGGCCA 60.033 55.000 4.71 4.71 0.00 5.36
649 650 0.674534 CTGTCGGACTATACCTGGCC 59.325 60.000 9.88 0.00 0.00 5.36
650 651 0.674534 CCTGTCGGACTATACCTGGC 59.325 60.000 9.88 0.00 0.00 4.85
651 652 0.674534 GCCTGTCGGACTATACCTGG 59.325 60.000 9.88 0.00 0.00 4.45
652 653 0.674534 GGCCTGTCGGACTATACCTG 59.325 60.000 9.88 0.00 34.48 4.00
653 654 0.260816 TGGCCTGTCGGACTATACCT 59.739 55.000 3.32 0.00 39.94 3.08
654 655 1.117150 TTGGCCTGTCGGACTATACC 58.883 55.000 3.32 6.43 39.94 2.73
655 656 2.547826 GTTTGGCCTGTCGGACTATAC 58.452 52.381 3.32 0.00 39.94 1.47
656 657 1.135527 CGTTTGGCCTGTCGGACTATA 59.864 52.381 3.32 0.00 39.94 1.31
657 658 0.108329 CGTTTGGCCTGTCGGACTAT 60.108 55.000 3.32 0.00 39.94 2.12
658 659 1.290955 CGTTTGGCCTGTCGGACTA 59.709 57.895 3.32 0.00 39.94 2.59
659 660 2.030562 CGTTTGGCCTGTCGGACT 59.969 61.111 3.32 0.00 39.94 3.85
660 661 3.047877 CCGTTTGGCCTGTCGGAC 61.048 66.667 21.88 0.00 44.86 4.79
661 662 4.323477 CCCGTTTGGCCTGTCGGA 62.323 66.667 25.85 0.00 44.86 4.55
662 663 4.636435 ACCCGTTTGGCCTGTCGG 62.636 66.667 20.29 20.29 42.22 4.79
663 664 3.353836 CACCCGTTTGGCCTGTCG 61.354 66.667 3.32 5.65 37.83 4.35
664 665 3.670377 GCACCCGTTTGGCCTGTC 61.670 66.667 3.32 0.00 37.83 3.51
671 672 4.939368 TGGTCCGGCACCCGTTTG 62.939 66.667 17.20 0.00 46.80 2.93
672 673 4.636435 CTGGTCCGGCACCCGTTT 62.636 66.667 17.20 0.00 46.80 3.60
755 756 4.156477 AGACTAGAGAGTGGAAAGTGCTT 58.844 43.478 0.00 0.00 35.45 3.91
809 814 1.991230 CTCATCCCCTTTGTCCCGT 59.009 57.895 0.00 0.00 0.00 5.28
810 815 1.452108 GCTCATCCCCTTTGTCCCG 60.452 63.158 0.00 0.00 0.00 5.14
811 816 1.076705 GGCTCATCCCCTTTGTCCC 60.077 63.158 0.00 0.00 0.00 4.46
875 880 3.329889 TGAAGGCACGGCAGGGAT 61.330 61.111 0.00 0.00 0.00 3.85
876 881 4.329545 GTGAAGGCACGGCAGGGA 62.330 66.667 0.00 0.00 34.94 4.20
879 884 4.680237 TCGGTGAAGGCACGGCAG 62.680 66.667 0.00 0.00 46.09 4.85
880 885 4.680237 CTCGGTGAAGGCACGGCA 62.680 66.667 0.00 0.00 46.09 5.69
882 887 4.680237 TGCTCGGTGAAGGCACGG 62.680 66.667 0.00 0.00 46.09 4.94
883 888 3.114616 CTGCTCGGTGAAGGCACG 61.115 66.667 0.00 0.00 46.09 5.34
895 900 0.319297 CCTTGGTTGCTTTGCTGCTC 60.319 55.000 0.00 0.00 0.00 4.26
957 969 2.252714 TCCAAGGTGGTAATTTTGGGC 58.747 47.619 4.84 0.00 40.33 5.36
1163 1184 3.511595 CCGCGGCGTAGTACCAGA 61.512 66.667 22.00 0.00 0.00 3.86
1308 1332 2.094659 CACGAGCACGGTGATCCAC 61.095 63.158 19.59 0.00 44.46 4.02
1520 1556 5.181433 AGGGCGTGAAAAGAACTAGAAAATC 59.819 40.000 0.00 0.00 0.00 2.17
1521 1557 5.070685 AGGGCGTGAAAAGAACTAGAAAAT 58.929 37.500 0.00 0.00 0.00 1.82
1527 1565 6.887626 AATAAAAGGGCGTGAAAAGAACTA 57.112 33.333 0.00 0.00 0.00 2.24
1554 1592 9.552114 CTACAAATGAAATTAGCAACAGAAGAG 57.448 33.333 0.00 0.00 33.67 2.85
1613 1665 6.365520 ACAGAAACAAGAACTTCCATTACCT 58.634 36.000 0.00 0.00 0.00 3.08
1616 1668 8.792633 CCATTACAGAAACAAGAACTTCCATTA 58.207 33.333 0.00 0.00 0.00 1.90
1662 1714 7.324178 ACAGCTTAAAGATCACTACCAGTTAG 58.676 38.462 0.00 0.00 0.00 2.34
1722 1774 0.747255 GCAGTAGTAGCAGCAGCCTA 59.253 55.000 0.00 0.00 43.56 3.93
1726 1778 0.248825 CGGAGCAGTAGTAGCAGCAG 60.249 60.000 0.00 0.00 0.00 4.24
1837 1889 2.606519 AGGGCTTACGGGACTGCA 60.607 61.111 0.00 0.00 0.00 4.41
1842 1894 2.686106 GTGGGAGGGCTTACGGGA 60.686 66.667 0.00 0.00 0.00 5.14
1868 1920 4.322725 GCATCATCAACGGATATGGACCTA 60.323 45.833 0.00 0.00 30.87 3.08
1869 1921 3.557898 GCATCATCAACGGATATGGACCT 60.558 47.826 0.00 0.00 30.87 3.85
1877 1929 2.593376 CGTCGCATCATCAACGGAT 58.407 52.632 0.00 0.00 0.00 4.18
1979 2031 3.434453 CGACTACTGAGGAGGAGAAGGAT 60.434 52.174 0.00 0.00 33.13 3.24
2022 2095 3.414700 CACTGCGCTCGACCCAAC 61.415 66.667 9.73 0.00 0.00 3.77
2024 2097 3.611674 TTCACTGCGCTCGACCCA 61.612 61.111 9.73 0.00 0.00 4.51
2029 2102 3.470567 GGTCGTTCACTGCGCTCG 61.471 66.667 9.73 1.70 0.00 5.03
2035 2108 1.876453 CTTCGCGTGGTCGTTCACTG 61.876 60.000 5.77 4.71 39.49 3.66
2084 2157 2.672307 AAGCGGTCGTCGAGGTCT 60.672 61.111 4.85 0.00 42.43 3.85
2085 2158 2.202453 GAAGCGGTCGTCGAGGTC 60.202 66.667 4.85 0.00 42.43 3.85
2115 2188 4.261405 GGTGATACTGAACGAGATGAGGAG 60.261 50.000 0.00 0.00 0.00 3.69
2157 2234 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2158 2235 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2160 2237 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2162 2239 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2166 2243 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
2199 2276 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
2200 2277 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
2201 2278 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2202 2279 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2203 2280 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
2204 2281 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2205 2282 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2206 2283 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2207 2284 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2208 2285 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2209 2286 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2210 2287 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2211 2288 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2212 2289 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2213 2290 3.118038 CCCCTCCGTTCCAAAATAGATGA 60.118 47.826 0.00 0.00 0.00 2.92
2214 2291 3.214328 CCCCTCCGTTCCAAAATAGATG 58.786 50.000 0.00 0.00 0.00 2.90
2215 2292 2.850568 ACCCCTCCGTTCCAAAATAGAT 59.149 45.455 0.00 0.00 0.00 1.98
2216 2293 2.271777 ACCCCTCCGTTCCAAAATAGA 58.728 47.619 0.00 0.00 0.00 1.98
2217 2294 2.801077 ACCCCTCCGTTCCAAAATAG 57.199 50.000 0.00 0.00 0.00 1.73
2218 2295 3.330110 TGTAACCCCTCCGTTCCAAAATA 59.670 43.478 0.00 0.00 0.00 1.40
2219 2296 2.108601 TGTAACCCCTCCGTTCCAAAAT 59.891 45.455 0.00 0.00 0.00 1.82
2220 2297 1.493871 TGTAACCCCTCCGTTCCAAAA 59.506 47.619 0.00 0.00 0.00 2.44
2221 2298 1.138568 TGTAACCCCTCCGTTCCAAA 58.861 50.000 0.00 0.00 0.00 3.28
2222 2299 0.397564 GTGTAACCCCTCCGTTCCAA 59.602 55.000 0.00 0.00 0.00 3.53
2223 2300 1.818959 CGTGTAACCCCTCCGTTCCA 61.819 60.000 0.00 0.00 0.00 3.53
2224 2301 1.079612 CGTGTAACCCCTCCGTTCC 60.080 63.158 0.00 0.00 0.00 3.62
2225 2302 0.887933 TACGTGTAACCCCTCCGTTC 59.112 55.000 0.00 0.00 33.32 3.95
2226 2303 1.205417 CATACGTGTAACCCCTCCGTT 59.795 52.381 0.00 0.00 33.32 4.44
2227 2304 0.819582 CATACGTGTAACCCCTCCGT 59.180 55.000 0.00 0.00 35.68 4.69
2228 2305 0.529119 GCATACGTGTAACCCCTCCG 60.529 60.000 0.00 0.00 0.00 4.63
2229 2306 0.529119 CGCATACGTGTAACCCCTCC 60.529 60.000 0.00 0.00 33.53 4.30
2230 2307 1.149964 GCGCATACGTGTAACCCCTC 61.150 60.000 0.30 0.00 42.83 4.30
2231 2308 1.153509 GCGCATACGTGTAACCCCT 60.154 57.895 0.30 0.00 42.83 4.79
2232 2309 2.175621 GGCGCATACGTGTAACCCC 61.176 63.158 10.83 0.00 42.83 4.95
2233 2310 0.812412 ATGGCGCATACGTGTAACCC 60.812 55.000 10.83 0.00 42.83 4.11
2234 2311 0.303493 CATGGCGCATACGTGTAACC 59.697 55.000 10.83 0.00 42.83 2.85
2243 2320 2.252976 TTATGTGAGCATGGCGCATA 57.747 45.000 10.83 0.00 46.13 3.14
2261 2338 2.887152 GTGCTCTGTTCTTGACCCATTT 59.113 45.455 0.00 0.00 0.00 2.32
2287 2364 2.280592 ACGAAACAGGTGACGGCC 60.281 61.111 0.00 0.00 0.00 6.13
2292 2369 0.596600 GCTCGACACGAAACAGGTGA 60.597 55.000 0.00 0.00 38.73 4.02
2293 2370 0.874175 TGCTCGACACGAAACAGGTG 60.874 55.000 0.00 0.00 41.15 4.00
2319 2396 3.384014 GACAGCGAGGAGGACGACG 62.384 68.421 0.00 0.00 0.00 5.12
2384 2461 4.228097 CTACGCGCACTGCCATGC 62.228 66.667 5.73 0.00 42.08 4.06
2422 2499 0.890996 CAAACCACTGCAGGTCCCTC 60.891 60.000 19.93 0.00 42.25 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.