Multiple sequence alignment - TraesCS5B01G237500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G237500 chr5B 100.000 2552 0 0 1 2552 418470990 418473541 0.000000e+00 4713.0
1 TraesCS5B01G237500 chr5B 87.284 464 33 5 2115 2552 418505426 418505889 8.150000e-140 507.0
2 TraesCS5B01G237500 chr5B 88.642 405 32 11 554 955 709933527 709933920 4.940000e-132 481.0
3 TraesCS5B01G237500 chr5A 93.636 2137 104 16 1 2114 455088165 455090292 0.000000e+00 3164.0
4 TraesCS5B01G237500 chr5A 93.264 193 13 0 2115 2307 60732662 60732470 4.160000e-73 285.0
5 TraesCS5B01G237500 chr5D 94.832 1761 79 7 1 1757 354258612 354260364 0.000000e+00 2737.0
6 TraesCS5B01G237500 chr5D 100.000 46 0 0 1775 1820 354260357 354260402 4.520000e-13 86.1
7 TraesCS5B01G237500 chr2A 88.710 434 43 5 2115 2544 210871873 210871442 2.250000e-145 525.0
8 TraesCS5B01G237500 chr2A 87.041 463 35 2 2115 2552 624444317 624443855 1.360000e-137 499.0
9 TraesCS5B01G237500 chr2A 84.848 462 45 7 2114 2551 433252369 433252829 2.330000e-120 442.0
10 TraesCS5B01G237500 chr1B 86.551 461 38 10 2112 2549 665661558 665661099 1.060000e-133 486.0
11 TraesCS5B01G237500 chr1B 84.683 457 46 7 2115 2547 481070676 481070220 3.900000e-118 435.0
12 TraesCS5B01G237500 chr4A 86.652 457 36 5 2115 2547 80028914 80028459 1.370000e-132 483.0
13 TraesCS5B01G237500 chr4A 86.433 457 38 7 2115 2547 166632756 166632300 1.780000e-131 479.0
14 TraesCS5B01G237500 chr1D 86.433 457 38 5 2115 2547 213294248 213294704 1.780000e-131 479.0
15 TraesCS5B01G237500 chr7A 86.374 455 37 9 2115 2544 621804047 621803593 8.260000e-130 473.0
16 TraesCS5B01G237500 chr7B 86.057 459 39 2 2115 2549 504234286 504234743 1.070000e-128 470.0
17 TraesCS5B01G237500 chr2B 86.057 459 39 9 2115 2549 388173279 388172822 1.070000e-128 470.0
18 TraesCS5B01G237500 chr1A 86.093 453 39 7 2114 2542 296243634 296244086 1.380000e-127 466.0
19 TraesCS5B01G237500 chr1A 84.396 455 45 10 2115 2544 274485998 274485545 8.440000e-115 424.0
20 TraesCS5B01G237500 chr6A 93.367 196 13 0 2112 2307 473483288 473483483 8.930000e-75 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G237500 chr5B 418470990 418473541 2551 False 4713.00 4713 100.000 1 2552 1 chr5B.!!$F1 2551
1 TraesCS5B01G237500 chr5A 455088165 455090292 2127 False 3164.00 3164 93.636 1 2114 1 chr5A.!!$F1 2113
2 TraesCS5B01G237500 chr5D 354258612 354260402 1790 False 1411.55 2737 97.416 1 1820 2 chr5D.!!$F1 1819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 507 1.065102 CTGGTGCTGCATAGATTGTGC 59.935 52.381 5.27 0.0 42.81 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2465 2490 0.109735 GTTTCTGCTTAGCCCGCAAC 60.11 55.0 0.29 0.0 36.88 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 62 6.790319 ACCTGATACATGGAAGGTTAAACTT 58.210 36.000 5.17 5.17 40.14 2.66
156 165 3.747266 GGCTGATGCTGCCAGATC 58.253 61.111 9.65 1.31 45.75 2.75
197 206 2.835764 TGGAACTGTAAATAGCTCGGGT 59.164 45.455 0.00 0.00 0.00 5.28
241 250 4.438744 GCTTGTGGGGATAAATTCTTGACG 60.439 45.833 0.00 0.00 0.00 4.35
355 364 2.747396 TTGGATGGCATCTTGTTTGC 57.253 45.000 25.48 8.83 39.41 3.68
459 469 1.102978 GTTGGTGCTGTCTGTTTGGT 58.897 50.000 0.00 0.00 0.00 3.67
486 496 5.741982 CGGTAATTTTATTAACTGGTGCTGC 59.258 40.000 0.00 0.00 0.00 5.25
497 507 1.065102 CTGGTGCTGCATAGATTGTGC 59.935 52.381 5.27 0.00 42.81 4.57
528 538 7.417612 ACATGTGATTCTTTTCACTACACAAC 58.582 34.615 0.00 0.00 45.07 3.32
694 706 4.640771 AAAGAGATTGCTTGGACCAGTA 57.359 40.909 0.00 0.00 0.00 2.74
699 711 2.839486 TTGCTTGGACCAGTACTCAG 57.161 50.000 0.00 0.00 0.00 3.35
700 712 2.009681 TGCTTGGACCAGTACTCAGA 57.990 50.000 0.00 0.00 0.00 3.27
701 713 2.325484 TGCTTGGACCAGTACTCAGAA 58.675 47.619 0.00 0.00 0.00 3.02
748 763 4.128643 AGCAGCTTAGATGAGATTCTTGC 58.871 43.478 0.10 0.00 0.00 4.01
902 919 3.457234 TCTGTTCAGCACACAACAGTAG 58.543 45.455 10.71 0.00 46.51 2.57
978 995 4.125703 CCTTCTCCATCATCTGTTGCTAC 58.874 47.826 0.00 0.00 0.00 3.58
1029 1046 2.630158 CTGAGCATCCTGACCTTCAAG 58.370 52.381 0.00 0.00 0.00 3.02
1065 1082 4.016706 CGGTTCAAGCCCTCCCGT 62.017 66.667 0.00 0.00 34.10 5.28
1164 1181 1.880027 GCCAAGGTGTTCGACAAGATT 59.120 47.619 0.00 0.00 0.00 2.40
1170 1187 0.250124 TGTTCGACAAGATTGCCGGT 60.250 50.000 1.90 0.00 34.72 5.28
1188 1205 3.157252 GAGCCTGGCCGGATCTCA 61.157 66.667 15.09 0.00 44.89 3.27
1224 1241 4.900154 CTCCTGCAGAGGTTCGAC 57.100 61.111 17.39 0.00 40.76 4.20
1284 1301 2.034879 CGCCGACAGCAACAAGGAT 61.035 57.895 0.00 0.00 44.04 3.24
1520 1537 2.577563 TGGACATGGATGACTTCATGGT 59.422 45.455 0.00 0.00 43.49 3.55
1640 1661 9.540431 GTAACGTAAACTGAAACTTGTAAACAA 57.460 29.630 0.00 0.00 0.00 2.83
1764 1785 3.747099 ATATGTTCAAAGTGCAGCGTC 57.253 42.857 0.00 0.00 0.00 5.19
1820 1842 6.266558 TGCACCTAAAAATACTGTGGTTTGAT 59.733 34.615 0.00 0.00 0.00 2.57
1826 1848 9.345517 CTAAAAATACTGTGGTTTGATCATGTG 57.654 33.333 0.00 0.00 0.00 3.21
1854 1876 3.485463 AAAGTTTCGACCATGTGGAGA 57.515 42.857 5.96 2.18 38.94 3.71
1855 1877 3.703001 AAGTTTCGACCATGTGGAGAT 57.297 42.857 5.96 0.00 38.94 2.75
1863 1885 4.098960 TCGACCATGTGGAGATTAGTTACC 59.901 45.833 5.96 0.00 38.94 2.85
1894 1916 6.206634 ACGGAAATAACTGTGTTTGATCATGT 59.793 34.615 0.00 0.00 0.00 3.21
1916 1938 6.408035 TGTAACTCTTTGTTGTGTAAGTGGA 58.592 36.000 0.00 0.00 39.55 4.02
1919 1941 9.048446 GTAACTCTTTGTTGTGTAAGTGGATAA 57.952 33.333 0.00 0.00 39.55 1.75
1920 1942 8.691661 AACTCTTTGTTGTGTAAGTGGATAAT 57.308 30.769 0.00 0.00 37.52 1.28
1921 1943 9.787435 AACTCTTTGTTGTGTAAGTGGATAATA 57.213 29.630 0.00 0.00 37.52 0.98
1950 1972 5.819379 AGAAATGCGAATCATTAGCTTCTCA 59.181 36.000 3.99 0.00 44.23 3.27
1963 1985 3.012518 AGCTTCTCATTCACATTTCCGG 58.987 45.455 0.00 0.00 0.00 5.14
1964 1986 2.749621 GCTTCTCATTCACATTTCCGGT 59.250 45.455 0.00 0.00 0.00 5.28
1984 2006 5.871524 CCGGTATGATATCATGGAAGTCAAG 59.128 44.000 25.44 8.28 37.15 3.02
1986 2008 6.367149 CGGTATGATATCATGGAAGTCAAGTG 59.633 42.308 25.44 1.83 37.15 3.16
2114 2139 5.422650 GGTTATACAGTCTTCCTCTGAACCT 59.577 44.000 0.00 0.00 35.90 3.50
2115 2140 6.334202 GTTATACAGTCTTCCTCTGAACCTG 58.666 44.000 0.00 0.00 36.81 4.00
2116 2141 2.683768 ACAGTCTTCCTCTGAACCTGT 58.316 47.619 0.00 0.00 34.84 4.00
2117 2142 3.041946 ACAGTCTTCCTCTGAACCTGTT 58.958 45.455 0.00 0.00 35.56 3.16
2118 2143 3.181461 ACAGTCTTCCTCTGAACCTGTTG 60.181 47.826 0.00 0.00 35.56 3.33
2119 2144 3.070159 CAGTCTTCCTCTGAACCTGTTGA 59.930 47.826 0.00 0.00 35.20 3.18
2120 2145 3.070302 AGTCTTCCTCTGAACCTGTTGAC 59.930 47.826 0.00 0.00 0.00 3.18
2121 2146 3.038280 TCTTCCTCTGAACCTGTTGACA 58.962 45.455 0.00 0.00 0.00 3.58
2122 2147 2.910688 TCCTCTGAACCTGTTGACAC 57.089 50.000 0.00 0.00 0.00 3.67
2123 2148 1.416401 TCCTCTGAACCTGTTGACACC 59.584 52.381 0.00 0.00 0.00 4.16
2124 2149 1.140852 CCTCTGAACCTGTTGACACCA 59.859 52.381 0.00 0.00 0.00 4.17
2125 2150 2.487934 CTCTGAACCTGTTGACACCAG 58.512 52.381 0.00 0.00 0.00 4.00
2126 2151 2.103094 CTCTGAACCTGTTGACACCAGA 59.897 50.000 0.83 0.00 31.38 3.86
2127 2152 2.705658 TCTGAACCTGTTGACACCAGAT 59.294 45.455 0.83 0.00 31.38 2.90
2128 2153 3.136443 TCTGAACCTGTTGACACCAGATT 59.864 43.478 0.83 0.00 31.38 2.40
2129 2154 3.885297 CTGAACCTGTTGACACCAGATTT 59.115 43.478 0.83 0.00 31.38 2.17
2130 2155 4.277476 TGAACCTGTTGACACCAGATTTT 58.723 39.130 0.83 0.00 31.38 1.82
2131 2156 4.097741 TGAACCTGTTGACACCAGATTTTG 59.902 41.667 0.83 0.00 31.38 2.44
2155 2180 6.207691 GCATGGCCAAGAACTTAATTAAGA 57.792 37.500 27.92 6.14 37.08 2.10
2156 2181 6.809869 GCATGGCCAAGAACTTAATTAAGAT 58.190 36.000 27.92 18.45 37.08 2.40
2157 2182 6.698766 GCATGGCCAAGAACTTAATTAAGATG 59.301 38.462 27.92 18.26 37.08 2.90
2158 2183 6.773976 TGGCCAAGAACTTAATTAAGATGG 57.226 37.500 27.92 25.48 37.08 3.51
2159 2184 6.252995 TGGCCAAGAACTTAATTAAGATGGT 58.747 36.000 27.92 12.17 37.08 3.55
2160 2185 6.377146 TGGCCAAGAACTTAATTAAGATGGTC 59.623 38.462 27.92 26.01 37.08 4.02
2161 2186 6.603599 GGCCAAGAACTTAATTAAGATGGTCT 59.396 38.462 27.92 19.89 37.08 3.85
2162 2187 7.201741 GGCCAAGAACTTAATTAAGATGGTCTC 60.202 40.741 27.92 17.68 37.08 3.36
2163 2188 7.336931 GCCAAGAACTTAATTAAGATGGTCTCA 59.663 37.037 27.92 0.00 37.08 3.27
2164 2189 9.231297 CCAAGAACTTAATTAAGATGGTCTCAA 57.769 33.333 27.92 0.00 37.08 3.02
2169 2194 9.753674 AACTTAATTAAGATGGTCTCAAATGGA 57.246 29.630 27.92 0.00 37.08 3.41
2170 2195 9.401058 ACTTAATTAAGATGGTCTCAAATGGAG 57.599 33.333 27.92 0.06 39.61 3.86
2171 2196 9.618890 CTTAATTAAGATGGTCTCAAATGGAGA 57.381 33.333 18.69 0.00 41.76 3.71
2181 2206 3.401033 TCAAATGGAGAAGTGCTCGAA 57.599 42.857 0.00 0.00 44.91 3.71
2182 2207 3.329386 TCAAATGGAGAAGTGCTCGAAG 58.671 45.455 0.00 0.00 44.91 3.79
2183 2208 3.070018 CAAATGGAGAAGTGCTCGAAGT 58.930 45.455 0.00 0.00 44.91 3.01
2184 2209 4.021456 TCAAATGGAGAAGTGCTCGAAGTA 60.021 41.667 0.00 0.00 44.91 2.24
2185 2210 4.537135 AATGGAGAAGTGCTCGAAGTAA 57.463 40.909 0.00 0.00 44.91 2.24
2186 2211 3.577649 TGGAGAAGTGCTCGAAGTAAG 57.422 47.619 0.00 0.00 44.91 2.34
2187 2212 3.154710 TGGAGAAGTGCTCGAAGTAAGA 58.845 45.455 0.00 0.00 44.91 2.10
2188 2213 3.572682 TGGAGAAGTGCTCGAAGTAAGAA 59.427 43.478 0.00 0.00 44.91 2.52
2189 2214 4.038763 TGGAGAAGTGCTCGAAGTAAGAAA 59.961 41.667 0.00 0.00 44.91 2.52
2190 2215 4.623595 GGAGAAGTGCTCGAAGTAAGAAAG 59.376 45.833 0.00 0.00 44.91 2.62
2191 2216 5.203060 AGAAGTGCTCGAAGTAAGAAAGT 57.797 39.130 0.00 0.00 0.00 2.66
2192 2217 5.602628 AGAAGTGCTCGAAGTAAGAAAGTT 58.397 37.500 0.00 0.00 0.00 2.66
2193 2218 5.692654 AGAAGTGCTCGAAGTAAGAAAGTTC 59.307 40.000 0.00 0.00 34.64 3.01
2194 2219 4.308265 AGTGCTCGAAGTAAGAAAGTTCC 58.692 43.478 0.00 0.00 34.50 3.62
2195 2220 3.121445 GTGCTCGAAGTAAGAAAGTTCCG 59.879 47.826 0.00 0.00 34.50 4.30
2196 2221 2.092368 GCTCGAAGTAAGAAAGTTCCGC 59.908 50.000 0.00 0.00 34.50 5.54
2197 2222 3.314553 CTCGAAGTAAGAAAGTTCCGCA 58.685 45.455 0.00 0.00 34.50 5.69
2198 2223 3.921677 TCGAAGTAAGAAAGTTCCGCAT 58.078 40.909 0.00 0.00 34.50 4.73
2199 2224 3.924686 TCGAAGTAAGAAAGTTCCGCATC 59.075 43.478 0.00 0.00 34.50 3.91
2200 2225 3.241678 CGAAGTAAGAAAGTTCCGCATCG 60.242 47.826 0.00 0.00 34.50 3.84
2201 2226 3.314541 AGTAAGAAAGTTCCGCATCGT 57.685 42.857 0.00 0.00 0.00 3.73
2202 2227 3.251571 AGTAAGAAAGTTCCGCATCGTC 58.748 45.455 0.00 0.00 0.00 4.20
2203 2228 2.163818 AAGAAAGTTCCGCATCGTCA 57.836 45.000 0.00 0.00 0.00 4.35
2204 2229 2.163818 AGAAAGTTCCGCATCGTCAA 57.836 45.000 0.00 0.00 0.00 3.18
2205 2230 2.489971 AGAAAGTTCCGCATCGTCAAA 58.510 42.857 0.00 0.00 0.00 2.69
2206 2231 2.875933 AGAAAGTTCCGCATCGTCAAAA 59.124 40.909 0.00 0.00 0.00 2.44
2207 2232 2.969443 AAGTTCCGCATCGTCAAAAG 57.031 45.000 0.00 0.00 0.00 2.27
2208 2233 2.163818 AGTTCCGCATCGTCAAAAGA 57.836 45.000 0.00 0.00 0.00 2.52
2209 2234 2.489971 AGTTCCGCATCGTCAAAAGAA 58.510 42.857 0.00 0.00 0.00 2.52
2210 2235 2.480419 AGTTCCGCATCGTCAAAAGAAG 59.520 45.455 0.00 0.00 0.00 2.85
2211 2236 2.448926 TCCGCATCGTCAAAAGAAGA 57.551 45.000 0.00 0.00 0.00 2.87
2212 2237 2.761559 TCCGCATCGTCAAAAGAAGAA 58.238 42.857 0.00 0.00 0.00 2.52
2213 2238 3.135225 TCCGCATCGTCAAAAGAAGAAA 58.865 40.909 0.00 0.00 0.00 2.52
2214 2239 3.059188 TCCGCATCGTCAAAAGAAGAAAC 60.059 43.478 0.00 0.00 0.00 2.78
2215 2240 3.058914 CCGCATCGTCAAAAGAAGAAACT 60.059 43.478 0.00 0.00 0.00 2.66
2216 2241 4.527564 CGCATCGTCAAAAGAAGAAACTT 58.472 39.130 0.00 0.00 0.00 2.66
2217 2242 4.970003 CGCATCGTCAAAAGAAGAAACTTT 59.030 37.500 0.00 0.00 41.09 2.66
2218 2243 5.108630 CGCATCGTCAAAAGAAGAAACTTTG 60.109 40.000 0.00 0.00 39.57 2.77
2219 2244 5.743872 GCATCGTCAAAAGAAGAAACTTTGT 59.256 36.000 0.00 0.00 39.57 2.83
2220 2245 6.253512 GCATCGTCAAAAGAAGAAACTTTGTT 59.746 34.615 0.00 0.00 39.57 2.83
2221 2246 7.431084 GCATCGTCAAAAGAAGAAACTTTGTTA 59.569 33.333 0.00 0.00 39.57 2.41
2222 2247 9.450807 CATCGTCAAAAGAAGAAACTTTGTTAT 57.549 29.630 0.00 0.00 39.57 1.89
2224 2249 9.849166 TCGTCAAAAGAAGAAACTTTGTTATTT 57.151 25.926 0.00 0.00 39.57 1.40
2225 2250 9.885743 CGTCAAAAGAAGAAACTTTGTTATTTG 57.114 29.630 5.14 9.07 39.57 2.32
2227 2252 9.377312 TCAAAAGAAGAAACTTTGTTATTTGGG 57.623 29.630 15.16 8.41 39.57 4.12
2228 2253 7.786178 AAAGAAGAAACTTTGTTATTTGGGC 57.214 32.000 3.85 0.00 38.45 5.36
2229 2254 5.853936 AGAAGAAACTTTGTTATTTGGGCC 58.146 37.500 0.00 0.00 0.00 5.80
2230 2255 5.365314 AGAAGAAACTTTGTTATTTGGGCCA 59.635 36.000 0.00 0.00 0.00 5.36
2231 2256 5.823861 AGAAACTTTGTTATTTGGGCCAT 57.176 34.783 7.26 0.00 0.00 4.40
2232 2257 6.926630 AGAAACTTTGTTATTTGGGCCATA 57.073 33.333 7.26 1.88 0.00 2.74
2233 2258 6.935167 AGAAACTTTGTTATTTGGGCCATAG 58.065 36.000 7.26 0.00 0.00 2.23
2234 2259 4.736126 ACTTTGTTATTTGGGCCATAGC 57.264 40.909 7.26 0.00 38.76 2.97
2235 2260 4.093011 ACTTTGTTATTTGGGCCATAGCA 58.907 39.130 7.26 2.89 42.56 3.49
2236 2261 4.530161 ACTTTGTTATTTGGGCCATAGCAA 59.470 37.500 7.26 9.76 42.56 3.91
2237 2262 5.189539 ACTTTGTTATTTGGGCCATAGCAAT 59.810 36.000 7.26 6.74 42.56 3.56
2238 2263 4.935352 TGTTATTTGGGCCATAGCAATC 57.065 40.909 7.26 0.00 42.56 2.67
2239 2264 3.640967 TGTTATTTGGGCCATAGCAATCC 59.359 43.478 7.26 0.00 42.56 3.01
2240 2265 2.475339 ATTTGGGCCATAGCAATCCA 57.525 45.000 7.26 0.00 42.56 3.41
2241 2266 1.779221 TTTGGGCCATAGCAATCCAG 58.221 50.000 7.26 0.00 42.56 3.86
2242 2267 0.630673 TTGGGCCATAGCAATCCAGT 59.369 50.000 7.26 0.00 42.56 4.00
2243 2268 0.183492 TGGGCCATAGCAATCCAGTC 59.817 55.000 0.00 0.00 42.56 3.51
2244 2269 0.475906 GGGCCATAGCAATCCAGTCT 59.524 55.000 4.39 0.00 42.56 3.24
2245 2270 1.544314 GGGCCATAGCAATCCAGTCTC 60.544 57.143 4.39 0.00 42.56 3.36
2246 2271 1.141657 GGCCATAGCAATCCAGTCTCA 59.858 52.381 0.00 0.00 42.56 3.27
2247 2272 2.224719 GGCCATAGCAATCCAGTCTCAT 60.225 50.000 0.00 0.00 42.56 2.90
2248 2273 3.072944 GCCATAGCAATCCAGTCTCATC 58.927 50.000 0.00 0.00 39.53 2.92
2249 2274 3.244491 GCCATAGCAATCCAGTCTCATCT 60.244 47.826 0.00 0.00 39.53 2.90
2250 2275 4.567971 CCATAGCAATCCAGTCTCATCTC 58.432 47.826 0.00 0.00 0.00 2.75
2251 2276 4.283978 CCATAGCAATCCAGTCTCATCTCT 59.716 45.833 0.00 0.00 0.00 3.10
2252 2277 5.479724 CCATAGCAATCCAGTCTCATCTCTA 59.520 44.000 0.00 0.00 0.00 2.43
2253 2278 6.014755 CCATAGCAATCCAGTCTCATCTCTAA 60.015 42.308 0.00 0.00 0.00 2.10
2254 2279 5.534207 AGCAATCCAGTCTCATCTCTAAG 57.466 43.478 0.00 0.00 0.00 2.18
2255 2280 4.344679 AGCAATCCAGTCTCATCTCTAAGG 59.655 45.833 0.00 0.00 0.00 2.69
2256 2281 4.630111 CAATCCAGTCTCATCTCTAAGGC 58.370 47.826 0.00 0.00 0.00 4.35
2257 2282 2.672098 TCCAGTCTCATCTCTAAGGCC 58.328 52.381 0.00 0.00 0.00 5.19
2258 2283 1.339610 CCAGTCTCATCTCTAAGGCCG 59.660 57.143 0.00 0.00 0.00 6.13
2259 2284 2.302260 CAGTCTCATCTCTAAGGCCGA 58.698 52.381 0.00 0.00 0.00 5.54
2260 2285 2.690497 CAGTCTCATCTCTAAGGCCGAA 59.310 50.000 0.00 0.00 0.00 4.30
2261 2286 2.955660 AGTCTCATCTCTAAGGCCGAAG 59.044 50.000 0.00 0.00 0.00 3.79
2262 2287 2.691011 GTCTCATCTCTAAGGCCGAAGT 59.309 50.000 0.00 0.00 0.00 3.01
2263 2288 3.131400 GTCTCATCTCTAAGGCCGAAGTT 59.869 47.826 0.00 0.00 0.00 2.66
2264 2289 3.131223 TCTCATCTCTAAGGCCGAAGTTG 59.869 47.826 0.00 0.00 0.00 3.16
2265 2290 2.832129 TCATCTCTAAGGCCGAAGTTGT 59.168 45.455 0.00 0.00 0.00 3.32
2266 2291 2.743636 TCTCTAAGGCCGAAGTTGTG 57.256 50.000 0.00 0.00 0.00 3.33
2267 2292 1.968493 TCTCTAAGGCCGAAGTTGTGT 59.032 47.619 0.00 0.00 0.00 3.72
2268 2293 2.367567 TCTCTAAGGCCGAAGTTGTGTT 59.632 45.455 0.00 0.00 0.00 3.32
2269 2294 3.139077 CTCTAAGGCCGAAGTTGTGTTT 58.861 45.455 0.00 0.00 0.00 2.83
2270 2295 2.875933 TCTAAGGCCGAAGTTGTGTTTG 59.124 45.455 0.00 0.00 0.00 2.93
2271 2296 1.757682 AAGGCCGAAGTTGTGTTTGA 58.242 45.000 0.00 0.00 0.00 2.69
2272 2297 1.757682 AGGCCGAAGTTGTGTTTGAA 58.242 45.000 0.00 0.00 0.00 2.69
2273 2298 1.676006 AGGCCGAAGTTGTGTTTGAAG 59.324 47.619 0.00 0.00 0.00 3.02
2274 2299 1.404035 GGCCGAAGTTGTGTTTGAAGT 59.596 47.619 0.00 0.00 0.00 3.01
2275 2300 2.614983 GGCCGAAGTTGTGTTTGAAGTA 59.385 45.455 0.00 0.00 0.00 2.24
2276 2301 3.252458 GGCCGAAGTTGTGTTTGAAGTAT 59.748 43.478 0.00 0.00 0.00 2.12
2277 2302 4.261447 GGCCGAAGTTGTGTTTGAAGTATT 60.261 41.667 0.00 0.00 0.00 1.89
2304 2329 9.694520 CAGATTTTGTATTCAGAACACTATTCG 57.305 33.333 0.00 0.00 0.00 3.34
2305 2330 8.883731 AGATTTTGTATTCAGAACACTATTCGG 58.116 33.333 0.00 0.00 0.00 4.30
2306 2331 6.417191 TTTGTATTCAGAACACTATTCGGC 57.583 37.500 0.00 0.00 0.00 5.54
2307 2332 5.079689 TGTATTCAGAACACTATTCGGCA 57.920 39.130 0.00 0.00 0.00 5.69
2308 2333 5.670485 TGTATTCAGAACACTATTCGGCAT 58.330 37.500 0.00 0.00 0.00 4.40
2309 2334 6.811954 TGTATTCAGAACACTATTCGGCATA 58.188 36.000 0.00 0.00 0.00 3.14
2310 2335 7.441836 TGTATTCAGAACACTATTCGGCATAT 58.558 34.615 0.00 0.00 0.00 1.78
2311 2336 8.581578 TGTATTCAGAACACTATTCGGCATATA 58.418 33.333 0.00 0.00 0.00 0.86
2312 2337 9.419297 GTATTCAGAACACTATTCGGCATATAA 57.581 33.333 0.00 0.00 0.00 0.98
2313 2338 7.946655 TTCAGAACACTATTCGGCATATAAG 57.053 36.000 0.00 0.00 0.00 1.73
2314 2339 7.284919 TCAGAACACTATTCGGCATATAAGA 57.715 36.000 0.00 0.00 0.00 2.10
2315 2340 7.722363 TCAGAACACTATTCGGCATATAAGAA 58.278 34.615 0.00 0.00 0.00 2.52
2316 2341 8.201464 TCAGAACACTATTCGGCATATAAGAAA 58.799 33.333 0.00 0.00 0.00 2.52
2317 2342 8.276325 CAGAACACTATTCGGCATATAAGAAAC 58.724 37.037 0.00 0.00 0.00 2.78
2318 2343 6.764877 ACACTATTCGGCATATAAGAAACG 57.235 37.500 0.00 0.00 0.00 3.60
2319 2344 6.278363 ACACTATTCGGCATATAAGAAACGT 58.722 36.000 0.00 0.00 0.00 3.99
2320 2345 6.759827 ACACTATTCGGCATATAAGAAACGTT 59.240 34.615 0.00 0.00 0.00 3.99
2321 2346 7.279313 ACACTATTCGGCATATAAGAAACGTTT 59.721 33.333 14.57 14.57 0.00 3.60
2322 2347 7.792508 CACTATTCGGCATATAAGAAACGTTTC 59.207 37.037 29.36 29.36 37.45 2.78
2324 2349 9.188588 CTATTCGGCATATAAGAAACGTTTCTA 57.811 33.333 36.49 24.80 46.22 2.10
2325 2350 6.817270 TCGGCATATAAGAAACGTTTCTAC 57.183 37.500 36.49 22.66 46.22 2.59
2326 2351 6.331845 TCGGCATATAAGAAACGTTTCTACA 58.668 36.000 36.49 28.13 46.22 2.74
2327 2352 6.254157 TCGGCATATAAGAAACGTTTCTACAC 59.746 38.462 36.49 23.51 46.22 2.90
2328 2353 6.408428 GGCATATAAGAAACGTTTCTACACG 58.592 40.000 36.49 25.31 46.22 4.49
2329 2354 6.408428 GCATATAAGAAACGTTTCTACACGG 58.592 40.000 36.49 26.73 46.22 4.94
2330 2355 6.254157 GCATATAAGAAACGTTTCTACACGGA 59.746 38.462 36.49 21.49 46.22 4.69
2331 2356 7.042925 GCATATAAGAAACGTTTCTACACGGAT 60.043 37.037 36.49 23.92 46.22 4.18
2332 2357 8.814235 CATATAAGAAACGTTTCTACACGGATT 58.186 33.333 36.49 23.30 46.22 3.01
2333 2358 4.985044 AGAAACGTTTCTACACGGATTG 57.015 40.909 35.80 0.00 45.17 2.67
2334 2359 4.374399 AGAAACGTTTCTACACGGATTGT 58.626 39.130 35.80 12.61 45.17 2.71
2335 2360 4.446719 AGAAACGTTTCTACACGGATTGTC 59.553 41.667 35.80 9.95 45.17 3.18
2336 2361 3.655276 ACGTTTCTACACGGATTGTCT 57.345 42.857 0.00 0.00 44.82 3.41
2337 2362 3.986277 ACGTTTCTACACGGATTGTCTT 58.014 40.909 0.00 0.00 44.82 3.01
2338 2363 3.985925 ACGTTTCTACACGGATTGTCTTC 59.014 43.478 0.00 0.00 44.82 2.87
2339 2364 3.059044 CGTTTCTACACGGATTGTCTTCG 59.941 47.826 0.00 0.00 39.91 3.79
2340 2365 3.928727 TTCTACACGGATTGTCTTCGT 57.071 42.857 0.00 0.00 39.91 3.85
2341 2366 3.482722 TCTACACGGATTGTCTTCGTC 57.517 47.619 0.00 0.00 39.91 4.20
2342 2367 3.079578 TCTACACGGATTGTCTTCGTCT 58.920 45.455 0.00 0.00 39.91 4.18
2343 2368 2.349297 ACACGGATTGTCTTCGTCTC 57.651 50.000 0.00 0.00 29.79 3.36
2344 2369 1.260206 CACGGATTGTCTTCGTCTCG 58.740 55.000 0.00 0.00 34.73 4.04
2345 2370 0.879765 ACGGATTGTCTTCGTCTCGT 59.120 50.000 0.00 0.00 30.89 4.18
2346 2371 1.135746 ACGGATTGTCTTCGTCTCGTC 60.136 52.381 0.00 0.00 30.89 4.20
2347 2372 1.536149 GGATTGTCTTCGTCTCGTCG 58.464 55.000 0.00 0.00 0.00 5.12
2348 2373 1.129998 GGATTGTCTTCGTCTCGTCGA 59.870 52.381 0.00 0.00 38.08 4.20
2349 2374 2.413765 GGATTGTCTTCGTCTCGTCGAA 60.414 50.000 0.00 10.79 45.46 3.71
2350 2375 2.761392 TTGTCTTCGTCTCGTCGAAA 57.239 45.000 0.00 0.00 46.55 3.46
2351 2376 2.028287 TGTCTTCGTCTCGTCGAAAC 57.972 50.000 0.00 0.00 46.55 2.78
2394 2419 9.763465 AAAAACGTCTAAATCGGTATTTGTATG 57.237 29.630 0.00 0.00 36.02 2.39
2395 2420 6.520792 ACGTCTAAATCGGTATTTGTATGC 57.479 37.500 0.00 0.00 36.02 3.14
2396 2421 6.044046 ACGTCTAAATCGGTATTTGTATGCA 58.956 36.000 0.00 0.00 36.02 3.96
2397 2422 6.535865 ACGTCTAAATCGGTATTTGTATGCAA 59.464 34.615 0.00 0.00 36.02 4.08
2399 2424 7.906010 CGTCTAAATCGGTATTTGTATGCAAAA 59.094 33.333 13.11 0.00 46.23 2.44
2400 2425 9.221775 GTCTAAATCGGTATTTGTATGCAAAAG 57.778 33.333 13.11 3.19 46.23 2.27
2401 2426 8.952278 TCTAAATCGGTATTTGTATGCAAAAGT 58.048 29.630 13.11 0.48 46.23 2.66
2402 2427 9.567848 CTAAATCGGTATTTGTATGCAAAAGTT 57.432 29.630 13.11 4.72 46.23 2.66
2404 2429 9.567848 AAATCGGTATTTGTATGCAAAAGTTAG 57.432 29.630 13.11 4.79 46.23 2.34
2405 2430 7.908827 TCGGTATTTGTATGCAAAAGTTAGA 57.091 32.000 13.11 6.84 46.23 2.10
2406 2431 7.970384 TCGGTATTTGTATGCAAAAGTTAGAG 58.030 34.615 13.11 2.45 46.23 2.43
2407 2432 6.687105 CGGTATTTGTATGCAAAAGTTAGAGC 59.313 38.462 13.11 4.12 46.23 4.09
2408 2433 6.972901 GGTATTTGTATGCAAAAGTTAGAGCC 59.027 38.462 13.11 3.79 46.23 4.70
2409 2434 6.588719 ATTTGTATGCAAAAGTTAGAGCCA 57.411 33.333 13.11 0.00 46.23 4.75
2410 2435 6.398234 TTTGTATGCAAAAGTTAGAGCCAA 57.602 33.333 6.49 0.00 41.15 4.52
2411 2436 6.398234 TTGTATGCAAAAGTTAGAGCCAAA 57.602 33.333 0.00 0.00 0.00 3.28
2412 2437 6.398234 TGTATGCAAAAGTTAGAGCCAAAA 57.602 33.333 0.00 0.00 0.00 2.44
2413 2438 6.991938 TGTATGCAAAAGTTAGAGCCAAAAT 58.008 32.000 0.00 0.00 0.00 1.82
2414 2439 6.867816 TGTATGCAAAAGTTAGAGCCAAAATG 59.132 34.615 0.00 0.00 0.00 2.32
2415 2440 4.630111 TGCAAAAGTTAGAGCCAAAATGG 58.370 39.130 0.00 0.00 41.55 3.16
2416 2441 4.100808 TGCAAAAGTTAGAGCCAAAATGGT 59.899 37.500 0.00 0.00 40.46 3.55
2417 2442 4.448732 GCAAAAGTTAGAGCCAAAATGGTG 59.551 41.667 0.00 0.00 40.46 4.17
2418 2443 5.600696 CAAAAGTTAGAGCCAAAATGGTGT 58.399 37.500 0.00 0.00 40.46 4.16
2419 2444 4.853924 AAGTTAGAGCCAAAATGGTGTG 57.146 40.909 0.00 0.00 40.46 3.82
2420 2445 2.558359 AGTTAGAGCCAAAATGGTGTGC 59.442 45.455 0.00 0.00 40.46 4.57
2421 2446 2.558359 GTTAGAGCCAAAATGGTGTGCT 59.442 45.455 0.00 0.00 40.46 4.40
2422 2447 2.584835 AGAGCCAAAATGGTGTGCTA 57.415 45.000 0.00 0.00 40.46 3.49
2423 2448 3.091633 AGAGCCAAAATGGTGTGCTAT 57.908 42.857 0.00 0.00 40.46 2.97
2424 2449 4.235079 AGAGCCAAAATGGTGTGCTATA 57.765 40.909 0.00 0.00 40.46 1.31
2425 2450 4.796606 AGAGCCAAAATGGTGTGCTATAT 58.203 39.130 0.00 0.00 40.46 0.86
2426 2451 5.940617 AGAGCCAAAATGGTGTGCTATATA 58.059 37.500 0.00 0.00 40.46 0.86
2427 2452 6.364701 AGAGCCAAAATGGTGTGCTATATAA 58.635 36.000 0.00 0.00 40.46 0.98
2428 2453 6.488006 AGAGCCAAAATGGTGTGCTATATAAG 59.512 38.462 0.00 0.00 40.46 1.73
2429 2454 6.129179 AGCCAAAATGGTGTGCTATATAAGT 58.871 36.000 0.00 0.00 40.46 2.24
2430 2455 6.263168 AGCCAAAATGGTGTGCTATATAAGTC 59.737 38.462 0.00 0.00 40.46 3.01
2431 2456 6.263168 GCCAAAATGGTGTGCTATATAAGTCT 59.737 38.462 0.00 0.00 40.46 3.24
2432 2457 7.642669 CCAAAATGGTGTGCTATATAAGTCTG 58.357 38.462 0.00 0.00 31.35 3.51
2433 2458 6.867662 AAATGGTGTGCTATATAAGTCTGC 57.132 37.500 0.00 0.00 0.00 4.26
2434 2459 4.336889 TGGTGTGCTATATAAGTCTGCC 57.663 45.455 0.00 0.00 0.00 4.85
2435 2460 3.071023 TGGTGTGCTATATAAGTCTGCCC 59.929 47.826 0.00 0.00 0.00 5.36
2436 2461 3.557264 GGTGTGCTATATAAGTCTGCCCC 60.557 52.174 0.00 0.00 0.00 5.80
2437 2462 2.299013 TGTGCTATATAAGTCTGCCCCG 59.701 50.000 0.00 0.00 0.00 5.73
2438 2463 1.899814 TGCTATATAAGTCTGCCCCGG 59.100 52.381 0.00 0.00 0.00 5.73
2439 2464 2.176889 GCTATATAAGTCTGCCCCGGA 58.823 52.381 0.73 0.00 0.00 5.14
2440 2465 2.565834 GCTATATAAGTCTGCCCCGGAA 59.434 50.000 0.73 0.00 0.00 4.30
2441 2466 3.368531 GCTATATAAGTCTGCCCCGGAAG 60.369 52.174 0.73 0.00 0.00 3.46
2442 2467 2.170012 TATAAGTCTGCCCCGGAAGT 57.830 50.000 0.73 0.00 0.00 3.01
2443 2468 1.286248 ATAAGTCTGCCCCGGAAGTT 58.714 50.000 0.73 0.00 0.00 2.66
2444 2469 0.611714 TAAGTCTGCCCCGGAAGTTC 59.388 55.000 0.73 0.00 0.00 3.01
2445 2470 2.046217 GTCTGCCCCGGAAGTTCC 60.046 66.667 12.27 12.27 0.00 3.62
2464 2489 2.942641 GGACAAAACTTCCGGGGAG 58.057 57.895 0.00 0.00 0.00 4.30
2465 2490 0.608308 GGACAAAACTTCCGGGGAGG 60.608 60.000 7.39 0.00 42.97 4.30
2466 2491 0.109913 GACAAAACTTCCGGGGAGGT 59.890 55.000 7.39 0.00 41.99 3.85
2467 2492 0.554305 ACAAAACTTCCGGGGAGGTT 59.446 50.000 7.39 2.85 44.50 3.50
2468 2493 0.958822 CAAAACTTCCGGGGAGGTTG 59.041 55.000 14.95 6.51 42.34 3.77
2469 2494 0.826256 AAAACTTCCGGGGAGGTTGC 60.826 55.000 14.95 0.00 42.34 4.17
2470 2495 3.546714 AACTTCCGGGGAGGTTGCG 62.547 63.158 13.68 0.00 41.75 4.85
2471 2496 4.778143 CTTCCGGGGAGGTTGCGG 62.778 72.222 0.00 0.00 41.99 5.69
2476 2501 3.723922 GGGGAGGTTGCGGGCTAA 61.724 66.667 0.00 0.00 0.00 3.09
2477 2502 2.124695 GGGAGGTTGCGGGCTAAG 60.125 66.667 0.00 0.00 0.00 2.18
2478 2503 2.824489 GGAGGTTGCGGGCTAAGC 60.824 66.667 0.00 0.00 0.00 3.09
2479 2504 2.046314 GAGGTTGCGGGCTAAGCA 60.046 61.111 0.00 0.00 43.59 3.91
2480 2505 2.045926 AGGTTGCGGGCTAAGCAG 60.046 61.111 0.00 0.00 46.01 4.24
2481 2506 2.046314 GGTTGCGGGCTAAGCAGA 60.046 61.111 0.00 0.00 46.01 4.26
2482 2507 1.674322 GGTTGCGGGCTAAGCAGAA 60.674 57.895 0.00 0.00 46.01 3.02
2483 2508 1.241315 GGTTGCGGGCTAAGCAGAAA 61.241 55.000 0.00 0.00 46.01 2.52
2484 2509 0.109735 GTTGCGGGCTAAGCAGAAAC 60.110 55.000 0.00 0.00 46.01 2.78
2485 2510 0.250727 TTGCGGGCTAAGCAGAAACT 60.251 50.000 0.00 0.00 46.01 2.66
2486 2511 0.250727 TGCGGGCTAAGCAGAAACTT 60.251 50.000 0.00 0.00 40.01 2.66
2487 2512 0.881796 GCGGGCTAAGCAGAAACTTT 59.118 50.000 0.00 0.00 34.19 2.66
2488 2513 1.401539 GCGGGCTAAGCAGAAACTTTG 60.402 52.381 0.00 0.00 34.19 2.77
2489 2514 1.401539 CGGGCTAAGCAGAAACTTTGC 60.402 52.381 2.72 2.72 44.37 3.68
2490 2515 1.613437 GGGCTAAGCAGAAACTTTGCA 59.387 47.619 11.61 0.00 46.09 4.08
2491 2516 2.608016 GGGCTAAGCAGAAACTTTGCAC 60.608 50.000 11.61 5.33 46.09 4.57
2492 2517 2.310577 GCTAAGCAGAAACTTTGCACG 58.689 47.619 5.96 0.00 44.46 5.34
2493 2518 2.310577 CTAAGCAGAAACTTTGCACGC 58.689 47.619 0.00 0.00 43.92 5.34
2494 2519 0.592247 AAGCAGAAACTTTGCACGCG 60.592 50.000 3.53 3.53 43.92 6.01
2495 2520 2.010817 GCAGAAACTTTGCACGCGG 61.011 57.895 12.47 0.00 41.17 6.46
2496 2521 1.355210 CAGAAACTTTGCACGCGGT 59.645 52.632 12.47 0.00 0.00 5.68
2497 2522 0.929824 CAGAAACTTTGCACGCGGTG 60.930 55.000 12.47 7.75 36.51 4.94
2498 2523 1.063488 GAAACTTTGCACGCGGTGT 59.937 52.632 12.47 0.00 35.75 4.16
2511 2536 3.039134 GGTGTGCCCCGAAAACTG 58.961 61.111 0.00 0.00 0.00 3.16
2512 2537 1.527380 GGTGTGCCCCGAAAACTGA 60.527 57.895 0.00 0.00 0.00 3.41
2513 2538 1.104577 GGTGTGCCCCGAAAACTGAA 61.105 55.000 0.00 0.00 0.00 3.02
2514 2539 0.741915 GTGTGCCCCGAAAACTGAAA 59.258 50.000 0.00 0.00 0.00 2.69
2515 2540 1.339929 GTGTGCCCCGAAAACTGAAAT 59.660 47.619 0.00 0.00 0.00 2.17
2516 2541 2.035632 TGTGCCCCGAAAACTGAAATT 58.964 42.857 0.00 0.00 0.00 1.82
2517 2542 2.432510 TGTGCCCCGAAAACTGAAATTT 59.567 40.909 0.00 0.00 0.00 1.82
2518 2543 3.057019 GTGCCCCGAAAACTGAAATTTC 58.943 45.455 11.41 11.41 34.25 2.17
2519 2544 2.695666 TGCCCCGAAAACTGAAATTTCA 59.304 40.909 19.45 19.45 36.75 2.69
2520 2545 3.133003 TGCCCCGAAAACTGAAATTTCAA 59.867 39.130 20.82 6.29 36.75 2.69
2521 2546 4.202305 TGCCCCGAAAACTGAAATTTCAAT 60.202 37.500 20.82 9.42 36.75 2.57
2522 2547 5.011125 TGCCCCGAAAACTGAAATTTCAATA 59.989 36.000 20.82 0.00 36.75 1.90
2523 2548 6.106003 GCCCCGAAAACTGAAATTTCAATAT 58.894 36.000 20.82 7.73 36.75 1.28
2524 2549 6.593770 GCCCCGAAAACTGAAATTTCAATATT 59.406 34.615 20.82 14.85 36.75 1.28
2525 2550 7.762159 GCCCCGAAAACTGAAATTTCAATATTA 59.238 33.333 20.82 0.00 36.75 0.98
2526 2551 9.816354 CCCCGAAAACTGAAATTTCAATATTAT 57.184 29.630 20.82 6.48 36.75 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 62 3.181468 GGTCATGTGCAGATCTCATCAGA 60.181 47.826 0.00 0.00 0.00 3.27
115 124 3.457380 ACAATCATGACAGCTACCCATCT 59.543 43.478 0.00 0.00 0.00 2.90
125 134 3.733988 GCATCAGCCAACAATCATGACAG 60.734 47.826 0.00 0.00 33.58 3.51
156 165 3.554524 CATGACAAACAAAGCCTACACG 58.445 45.455 0.00 0.00 0.00 4.49
197 206 7.180408 ACAAGCTCTACTGGAAGGTCTTATTAA 59.820 37.037 0.00 0.00 39.30 1.40
241 250 6.375455 ACAAAGGATCATGGTATGAACAAGAC 59.625 38.462 0.00 0.00 43.50 3.01
305 314 6.651225 ACAAAAAGAAGTCAGCACCTAGATAC 59.349 38.462 0.00 0.00 0.00 2.24
306 315 6.650807 CACAAAAAGAAGTCAGCACCTAGATA 59.349 38.462 0.00 0.00 0.00 1.98
355 364 5.873179 TTTTCCGAACATAGCCTACAAAG 57.127 39.130 0.00 0.00 0.00 2.77
433 442 4.836125 ACAGACAGCACCAACAAATTAG 57.164 40.909 0.00 0.00 0.00 1.73
459 469 5.393243 GCACCAGTTAATAAAATTACCGCCA 60.393 40.000 0.00 0.00 0.00 5.69
486 496 8.599055 ATCACATGTAGTAAGCACAATCTATG 57.401 34.615 0.00 0.00 0.00 2.23
528 538 3.857052 TGTACCGTGCCTGAAATAGAAG 58.143 45.455 0.00 0.00 0.00 2.85
669 681 6.904626 ACTGGTCCAAGCAATCTCTTTATAT 58.095 36.000 0.00 0.00 0.00 0.86
670 682 6.313519 ACTGGTCCAAGCAATCTCTTTATA 57.686 37.500 0.00 0.00 0.00 0.98
671 683 5.184892 ACTGGTCCAAGCAATCTCTTTAT 57.815 39.130 0.00 0.00 0.00 1.40
672 684 4.640771 ACTGGTCCAAGCAATCTCTTTA 57.359 40.909 0.00 0.00 0.00 1.85
674 686 3.584848 AGTACTGGTCCAAGCAATCTCTT 59.415 43.478 0.00 0.00 0.00 2.85
678 690 3.055819 TCTGAGTACTGGTCCAAGCAATC 60.056 47.826 0.00 0.00 0.00 2.67
679 691 2.906389 TCTGAGTACTGGTCCAAGCAAT 59.094 45.455 0.00 0.00 0.00 3.56
680 692 2.325484 TCTGAGTACTGGTCCAAGCAA 58.675 47.619 0.00 0.00 0.00 3.91
681 693 2.009681 TCTGAGTACTGGTCCAAGCA 57.990 50.000 0.00 0.00 0.00 3.91
682 694 3.402628 TTTCTGAGTACTGGTCCAAGC 57.597 47.619 0.00 0.00 0.00 4.01
683 695 4.065789 GGTTTTCTGAGTACTGGTCCAAG 58.934 47.826 0.00 0.00 0.00 3.61
748 763 3.444742 TGGACCAGATAAGCATTGCAAAG 59.555 43.478 11.91 0.00 0.00 2.77
758 773 3.117738 AGGGCAAAGATGGACCAGATAAG 60.118 47.826 0.00 0.00 0.00 1.73
792 807 1.882623 CTTGCACTGAAAGGAACCTCC 59.117 52.381 0.00 0.00 39.30 4.30
870 887 1.002544 GCTGAACAGAGCTAAGGTGGT 59.997 52.381 5.97 0.00 35.95 4.16
902 919 4.036852 GTGCCCTTGATGAAGGTTTATAGC 59.963 45.833 10.28 5.53 46.84 2.97
978 995 1.179152 TGCAGATGGTTTGATGCAGG 58.821 50.000 0.00 0.00 43.34 4.85
984 1001 2.226200 CGACATGTTGCAGATGGTTTGA 59.774 45.455 0.00 0.00 0.00 2.69
1029 1046 1.798079 CGGAGCTTCGCTAGGTTGTAC 60.798 57.143 0.00 0.00 39.88 2.90
1170 1187 3.157252 GAGATCCGGCCAGGCTCA 61.157 66.667 12.43 0.00 37.60 4.26
1284 1301 0.620410 CCTCCAGGTCCATGTACCCA 60.620 60.000 3.42 0.00 40.71 4.51
1353 1370 0.387929 TGTCGAACACGAAGAAGGCT 59.612 50.000 0.00 0.00 37.78 4.58
1520 1537 1.141665 CTCGGGCGTGTCATCATGA 59.858 57.895 0.00 0.00 32.78 3.07
1530 1547 2.042843 ATCCTCTTCCTCGGGCGT 60.043 61.111 0.00 0.00 0.00 5.68
1619 1640 9.628746 TCCTTTTGTTTACAAGTTTCAGTTTAC 57.371 29.630 0.00 0.00 37.15 2.01
1655 1676 8.880750 AGAAGCATAGGAACGTTTATTTACTTC 58.119 33.333 17.21 17.21 0.00 3.01
1690 1711 6.643388 ACAAATAGTCTGTCATATGTGCTGA 58.357 36.000 1.90 4.42 0.00 4.26
1764 1785 6.024049 GGTCGAAACTTTGAATATGAGCTTG 58.976 40.000 0.00 0.00 0.00 4.01
1773 1794 7.116233 GTGCAATAATTGGTCGAAACTTTGAAT 59.884 33.333 0.00 0.00 0.00 2.57
1777 1798 5.010617 AGGTGCAATAATTGGTCGAAACTTT 59.989 36.000 0.00 0.00 0.00 2.66
1820 1842 5.694910 GTCGAAACTTTTCTACTCCACATGA 59.305 40.000 0.00 0.00 35.07 3.07
1826 1848 4.995487 ACATGGTCGAAACTTTTCTACTCC 59.005 41.667 0.00 2.17 34.43 3.85
1863 1885 3.314553 ACACAGTTATTTCCGTCAGACG 58.685 45.455 16.50 16.50 42.11 4.18
1877 1899 7.807977 AAGAGTTACATGATCAAACACAGTT 57.192 32.000 0.00 0.00 0.00 3.16
1894 1916 9.787435 ATTATCCACTTACACAACAAAGAGTTA 57.213 29.630 0.00 0.00 38.74 2.24
1919 1941 9.224267 AGCTAATGATTCGCATTTCTTGTATAT 57.776 29.630 4.47 0.00 44.68 0.86
1920 1942 8.607441 AGCTAATGATTCGCATTTCTTGTATA 57.393 30.769 4.47 0.00 44.68 1.47
1921 1943 7.502120 AGCTAATGATTCGCATTTCTTGTAT 57.498 32.000 4.47 0.00 44.68 2.29
1950 1972 7.337689 CCATGATATCATACCGGAAATGTGAAT 59.662 37.037 17.77 7.03 34.26 2.57
1963 1985 9.935241 ATACACTTGACTTCCATGATATCATAC 57.065 33.333 17.77 6.57 34.26 2.39
1984 2006 8.597662 TTGACAACAGGAGTAAAAGTATACAC 57.402 34.615 5.50 0.00 0.00 2.90
1986 2008 8.718734 CCTTTGACAACAGGAGTAAAAGTATAC 58.281 37.037 9.54 0.00 0.00 1.47
2044 2066 1.371558 GTCCTATCCATGCGTCCCC 59.628 63.158 0.00 0.00 0.00 4.81
2046 2068 0.464036 TGTGTCCTATCCATGCGTCC 59.536 55.000 0.00 0.00 0.00 4.79
2048 2070 2.356135 GTTTGTGTCCTATCCATGCGT 58.644 47.619 0.00 0.00 0.00 5.24
2049 2071 1.670811 GGTTTGTGTCCTATCCATGCG 59.329 52.381 0.00 0.00 0.00 4.73
2082 2105 8.312564 AGAGGAAGACTGTATAACCTAACAAAC 58.687 37.037 0.00 0.00 0.00 2.93
2130 2155 7.256261 TCTTAATTAAGTTCTTGGCCATGCCA 61.256 38.462 21.69 3.13 44.26 4.92
2131 2156 5.127031 TCTTAATTAAGTTCTTGGCCATGCC 59.873 40.000 21.69 2.97 40.58 4.40
2132 2157 6.207691 TCTTAATTAAGTTCTTGGCCATGC 57.792 37.500 21.69 0.00 34.93 4.06
2133 2158 7.147846 ACCATCTTAATTAAGTTCTTGGCCATG 60.148 37.037 21.69 9.88 34.93 3.66
2134 2159 6.897413 ACCATCTTAATTAAGTTCTTGGCCAT 59.103 34.615 21.69 5.10 34.93 4.40
2135 2160 6.252995 ACCATCTTAATTAAGTTCTTGGCCA 58.747 36.000 21.69 0.00 34.93 5.36
2136 2161 6.603599 AGACCATCTTAATTAAGTTCTTGGCC 59.396 38.462 21.69 16.39 34.93 5.36
2137 2162 7.336931 TGAGACCATCTTAATTAAGTTCTTGGC 59.663 37.037 21.69 17.62 34.93 4.52
2138 2163 8.792830 TGAGACCATCTTAATTAAGTTCTTGG 57.207 34.615 21.69 22.39 34.93 3.61
2143 2168 9.753674 TCCATTTGAGACCATCTTAATTAAGTT 57.246 29.630 21.69 12.90 34.93 2.66
2144 2169 9.401058 CTCCATTTGAGACCATCTTAATTAAGT 57.599 33.333 21.69 6.35 44.42 2.24
2145 2170 9.618890 TCTCCATTTGAGACCATCTTAATTAAG 57.381 33.333 17.60 17.60 45.29 1.85
2160 2185 2.964740 TCGAGCACTTCTCCATTTGAG 58.035 47.619 0.00 0.00 42.90 3.02
2161 2186 3.244215 ACTTCGAGCACTTCTCCATTTGA 60.244 43.478 0.00 0.00 38.62 2.69
2162 2187 3.070018 ACTTCGAGCACTTCTCCATTTG 58.930 45.455 0.00 0.00 38.62 2.32
2163 2188 3.409026 ACTTCGAGCACTTCTCCATTT 57.591 42.857 0.00 0.00 38.62 2.32
2164 2189 4.220821 TCTTACTTCGAGCACTTCTCCATT 59.779 41.667 0.00 0.00 38.62 3.16
2165 2190 3.764434 TCTTACTTCGAGCACTTCTCCAT 59.236 43.478 0.00 0.00 38.62 3.41
2166 2191 3.154710 TCTTACTTCGAGCACTTCTCCA 58.845 45.455 0.00 0.00 38.62 3.86
2167 2192 3.851976 TCTTACTTCGAGCACTTCTCC 57.148 47.619 0.00 0.00 38.62 3.71
2168 2193 5.224135 ACTTTCTTACTTCGAGCACTTCTC 58.776 41.667 0.00 0.00 38.47 2.87
2169 2194 5.203060 ACTTTCTTACTTCGAGCACTTCT 57.797 39.130 0.00 0.00 0.00 2.85
2170 2195 5.107414 GGAACTTTCTTACTTCGAGCACTTC 60.107 44.000 0.00 0.00 0.00 3.01
2171 2196 4.750598 GGAACTTTCTTACTTCGAGCACTT 59.249 41.667 0.00 0.00 0.00 3.16
2172 2197 4.308265 GGAACTTTCTTACTTCGAGCACT 58.692 43.478 0.00 0.00 0.00 4.40
2173 2198 3.121445 CGGAACTTTCTTACTTCGAGCAC 59.879 47.826 0.00 0.00 0.00 4.40
2174 2199 3.314553 CGGAACTTTCTTACTTCGAGCA 58.685 45.455 0.00 0.00 0.00 4.26
2175 2200 2.092368 GCGGAACTTTCTTACTTCGAGC 59.908 50.000 0.00 0.00 0.00 5.03
2176 2201 3.314553 TGCGGAACTTTCTTACTTCGAG 58.685 45.455 0.00 0.00 0.00 4.04
2177 2202 3.374220 TGCGGAACTTTCTTACTTCGA 57.626 42.857 0.00 0.00 0.00 3.71
2178 2203 3.241678 CGATGCGGAACTTTCTTACTTCG 60.242 47.826 0.00 0.00 0.00 3.79
2179 2204 3.678548 ACGATGCGGAACTTTCTTACTTC 59.321 43.478 0.00 0.00 0.00 3.01
2180 2205 3.660865 ACGATGCGGAACTTTCTTACTT 58.339 40.909 0.00 0.00 0.00 2.24
2181 2206 3.251571 GACGATGCGGAACTTTCTTACT 58.748 45.455 0.00 0.00 0.00 2.24
2182 2207 2.991190 TGACGATGCGGAACTTTCTTAC 59.009 45.455 0.00 0.00 0.00 2.34
2183 2208 3.306917 TGACGATGCGGAACTTTCTTA 57.693 42.857 0.00 0.00 0.00 2.10
2184 2209 2.163818 TGACGATGCGGAACTTTCTT 57.836 45.000 0.00 0.00 0.00 2.52
2185 2210 2.163818 TTGACGATGCGGAACTTTCT 57.836 45.000 0.00 0.00 0.00 2.52
2186 2211 2.961522 TTTGACGATGCGGAACTTTC 57.038 45.000 0.00 0.00 0.00 2.62
2187 2212 2.875933 TCTTTTGACGATGCGGAACTTT 59.124 40.909 0.00 0.00 0.00 2.66
2188 2213 2.489971 TCTTTTGACGATGCGGAACTT 58.510 42.857 0.00 0.00 0.00 2.66
2189 2214 2.163818 TCTTTTGACGATGCGGAACT 57.836 45.000 0.00 0.00 0.00 3.01
2190 2215 2.478894 TCTTCTTTTGACGATGCGGAAC 59.521 45.455 0.00 0.00 0.00 3.62
2191 2216 2.761559 TCTTCTTTTGACGATGCGGAA 58.238 42.857 0.00 0.00 0.00 4.30
2192 2217 2.448926 TCTTCTTTTGACGATGCGGA 57.551 45.000 0.00 0.00 0.00 5.54
2193 2218 3.058914 AGTTTCTTCTTTTGACGATGCGG 60.059 43.478 0.00 0.00 0.00 5.69
2194 2219 4.133856 AGTTTCTTCTTTTGACGATGCG 57.866 40.909 0.00 0.00 0.00 4.73
2195 2220 5.743872 ACAAAGTTTCTTCTTTTGACGATGC 59.256 36.000 3.49 0.00 35.77 3.91
2196 2221 7.740519 AACAAAGTTTCTTCTTTTGACGATG 57.259 32.000 3.49 0.00 35.77 3.84
2198 2223 9.849166 AAATAACAAAGTTTCTTCTTTTGACGA 57.151 25.926 3.49 0.00 35.77 4.20
2199 2224 9.885743 CAAATAACAAAGTTTCTTCTTTTGACG 57.114 29.630 3.49 0.00 35.77 4.35
2201 2226 9.377312 CCCAAATAACAAAGTTTCTTCTTTTGA 57.623 29.630 10.72 0.00 35.77 2.69
2202 2227 8.122330 GCCCAAATAACAAAGTTTCTTCTTTTG 58.878 33.333 0.00 0.00 35.77 2.44
2203 2228 7.282224 GGCCCAAATAACAAAGTTTCTTCTTTT 59.718 33.333 0.00 0.00 35.77 2.27
2204 2229 6.765989 GGCCCAAATAACAAAGTTTCTTCTTT 59.234 34.615 0.00 0.00 38.04 2.52
2205 2230 6.126911 TGGCCCAAATAACAAAGTTTCTTCTT 60.127 34.615 0.00 0.00 0.00 2.52
2206 2231 5.365314 TGGCCCAAATAACAAAGTTTCTTCT 59.635 36.000 0.00 0.00 0.00 2.85
2207 2232 5.606505 TGGCCCAAATAACAAAGTTTCTTC 58.393 37.500 0.00 0.00 0.00 2.87
2208 2233 5.622346 TGGCCCAAATAACAAAGTTTCTT 57.378 34.783 0.00 0.00 0.00 2.52
2209 2234 5.823861 ATGGCCCAAATAACAAAGTTTCT 57.176 34.783 0.00 0.00 0.00 2.52
2210 2235 5.580691 GCTATGGCCCAAATAACAAAGTTTC 59.419 40.000 0.00 0.00 0.00 2.78
2211 2236 5.012561 TGCTATGGCCCAAATAACAAAGTTT 59.987 36.000 0.00 0.00 37.74 2.66
2212 2237 4.530161 TGCTATGGCCCAAATAACAAAGTT 59.470 37.500 0.00 0.00 37.74 2.66
2213 2238 4.093011 TGCTATGGCCCAAATAACAAAGT 58.907 39.130 0.00 0.00 37.74 2.66
2214 2239 4.734398 TGCTATGGCCCAAATAACAAAG 57.266 40.909 0.00 0.00 37.74 2.77
2215 2240 5.396213 GGATTGCTATGGCCCAAATAACAAA 60.396 40.000 0.00 0.00 37.74 2.83
2216 2241 4.100808 GGATTGCTATGGCCCAAATAACAA 59.899 41.667 0.00 0.00 37.74 2.83
2217 2242 3.640967 GGATTGCTATGGCCCAAATAACA 59.359 43.478 0.00 0.00 37.74 2.41
2218 2243 3.640967 TGGATTGCTATGGCCCAAATAAC 59.359 43.478 0.00 0.00 37.74 1.89
2219 2244 3.896888 CTGGATTGCTATGGCCCAAATAA 59.103 43.478 0.00 0.00 37.74 1.40
2220 2245 3.117169 ACTGGATTGCTATGGCCCAAATA 60.117 43.478 0.00 0.00 37.74 1.40
2221 2246 2.322658 CTGGATTGCTATGGCCCAAAT 58.677 47.619 0.00 0.00 37.74 2.32
2222 2247 1.006998 ACTGGATTGCTATGGCCCAAA 59.993 47.619 0.00 0.00 37.74 3.28
2223 2248 0.630673 ACTGGATTGCTATGGCCCAA 59.369 50.000 0.00 0.00 37.74 4.12
2224 2249 0.183492 GACTGGATTGCTATGGCCCA 59.817 55.000 0.00 0.00 37.74 5.36
2225 2250 0.475906 AGACTGGATTGCTATGGCCC 59.524 55.000 0.00 0.00 37.74 5.80
2226 2251 1.141657 TGAGACTGGATTGCTATGGCC 59.858 52.381 0.00 0.00 37.74 5.36
2227 2252 2.627515 TGAGACTGGATTGCTATGGC 57.372 50.000 0.00 0.00 39.26 4.40
2228 2253 4.283978 AGAGATGAGACTGGATTGCTATGG 59.716 45.833 0.00 0.00 0.00 2.74
2229 2254 5.471556 AGAGATGAGACTGGATTGCTATG 57.528 43.478 0.00 0.00 0.00 2.23
2230 2255 6.211184 CCTTAGAGATGAGACTGGATTGCTAT 59.789 42.308 0.00 0.00 0.00 2.97
2231 2256 5.538053 CCTTAGAGATGAGACTGGATTGCTA 59.462 44.000 0.00 0.00 0.00 3.49
2232 2257 4.344679 CCTTAGAGATGAGACTGGATTGCT 59.655 45.833 0.00 0.00 0.00 3.91
2233 2258 4.630111 CCTTAGAGATGAGACTGGATTGC 58.370 47.826 0.00 0.00 0.00 3.56
2234 2259 4.502950 GGCCTTAGAGATGAGACTGGATTG 60.503 50.000 0.00 0.00 0.00 2.67
2235 2260 3.645687 GGCCTTAGAGATGAGACTGGATT 59.354 47.826 0.00 0.00 0.00 3.01
2236 2261 3.238597 GGCCTTAGAGATGAGACTGGAT 58.761 50.000 0.00 0.00 0.00 3.41
2237 2262 2.672098 GGCCTTAGAGATGAGACTGGA 58.328 52.381 0.00 0.00 0.00 3.86
2238 2263 1.339610 CGGCCTTAGAGATGAGACTGG 59.660 57.143 0.00 0.00 0.00 4.00
2239 2264 2.302260 TCGGCCTTAGAGATGAGACTG 58.698 52.381 0.00 0.00 0.00 3.51
2240 2265 2.738587 TCGGCCTTAGAGATGAGACT 57.261 50.000 0.00 0.00 0.00 3.24
2241 2266 2.691011 ACTTCGGCCTTAGAGATGAGAC 59.309 50.000 0.00 0.00 0.00 3.36
2242 2267 3.019799 ACTTCGGCCTTAGAGATGAGA 57.980 47.619 0.00 0.00 0.00 3.27
2243 2268 3.118956 ACAACTTCGGCCTTAGAGATGAG 60.119 47.826 0.00 0.00 0.00 2.90
2244 2269 2.832129 ACAACTTCGGCCTTAGAGATGA 59.168 45.455 0.00 0.00 0.00 2.92
2245 2270 2.932614 CACAACTTCGGCCTTAGAGATG 59.067 50.000 0.00 0.88 0.00 2.90
2246 2271 2.567615 ACACAACTTCGGCCTTAGAGAT 59.432 45.455 0.00 0.00 0.00 2.75
2247 2272 1.968493 ACACAACTTCGGCCTTAGAGA 59.032 47.619 0.00 0.00 0.00 3.10
2248 2273 2.457366 ACACAACTTCGGCCTTAGAG 57.543 50.000 0.00 0.00 0.00 2.43
2249 2274 2.875933 CAAACACAACTTCGGCCTTAGA 59.124 45.455 0.00 0.00 0.00 2.10
2250 2275 2.875933 TCAAACACAACTTCGGCCTTAG 59.124 45.455 0.00 0.00 0.00 2.18
2251 2276 2.920524 TCAAACACAACTTCGGCCTTA 58.079 42.857 0.00 0.00 0.00 2.69
2252 2277 1.757682 TCAAACACAACTTCGGCCTT 58.242 45.000 0.00 0.00 0.00 4.35
2253 2278 1.676006 CTTCAAACACAACTTCGGCCT 59.324 47.619 0.00 0.00 0.00 5.19
2254 2279 1.404035 ACTTCAAACACAACTTCGGCC 59.596 47.619 0.00 0.00 0.00 6.13
2255 2280 2.844122 ACTTCAAACACAACTTCGGC 57.156 45.000 0.00 0.00 0.00 5.54
2256 2281 6.018262 TCTGAATACTTCAAACACAACTTCGG 60.018 38.462 0.00 0.00 39.58 4.30
2257 2282 6.943981 TCTGAATACTTCAAACACAACTTCG 58.056 36.000 0.00 0.00 39.58 3.79
2258 2283 9.736023 AAATCTGAATACTTCAAACACAACTTC 57.264 29.630 0.00 0.00 39.58 3.01
2260 2285 9.520204 CAAAATCTGAATACTTCAAACACAACT 57.480 29.630 0.00 0.00 39.58 3.16
2261 2286 9.301153 ACAAAATCTGAATACTTCAAACACAAC 57.699 29.630 0.00 0.00 39.58 3.32
2278 2303 9.694520 CGAATAGTGTTCTGAATACAAAATCTG 57.305 33.333 17.71 5.51 0.00 2.90
2279 2304 8.883731 CCGAATAGTGTTCTGAATACAAAATCT 58.116 33.333 17.71 0.89 0.00 2.40
2280 2305 7.640240 GCCGAATAGTGTTCTGAATACAAAATC 59.360 37.037 17.71 9.89 0.00 2.17
2281 2306 7.120579 TGCCGAATAGTGTTCTGAATACAAAAT 59.879 33.333 17.71 6.92 0.00 1.82
2282 2307 6.428465 TGCCGAATAGTGTTCTGAATACAAAA 59.572 34.615 17.71 5.11 0.00 2.44
2283 2308 5.935206 TGCCGAATAGTGTTCTGAATACAAA 59.065 36.000 17.71 7.28 0.00 2.83
2284 2309 5.483811 TGCCGAATAGTGTTCTGAATACAA 58.516 37.500 17.71 0.00 0.00 2.41
2285 2310 5.079689 TGCCGAATAGTGTTCTGAATACA 57.920 39.130 17.71 6.10 0.00 2.29
2286 2311 7.891183 ATATGCCGAATAGTGTTCTGAATAC 57.109 36.000 9.00 9.00 0.00 1.89
2287 2312 9.639601 CTTATATGCCGAATAGTGTTCTGAATA 57.360 33.333 0.00 0.00 0.00 1.75
2288 2313 8.367911 TCTTATATGCCGAATAGTGTTCTGAAT 58.632 33.333 0.00 0.00 0.00 2.57
2289 2314 7.722363 TCTTATATGCCGAATAGTGTTCTGAA 58.278 34.615 0.00 0.00 0.00 3.02
2290 2315 7.284919 TCTTATATGCCGAATAGTGTTCTGA 57.715 36.000 0.00 0.00 0.00 3.27
2291 2316 7.946655 TTCTTATATGCCGAATAGTGTTCTG 57.053 36.000 0.00 0.00 0.00 3.02
2292 2317 7.169308 CGTTTCTTATATGCCGAATAGTGTTCT 59.831 37.037 0.00 0.00 0.00 3.01
2293 2318 7.042925 ACGTTTCTTATATGCCGAATAGTGTTC 60.043 37.037 0.00 0.00 0.00 3.18
2294 2319 6.759827 ACGTTTCTTATATGCCGAATAGTGTT 59.240 34.615 0.00 0.00 0.00 3.32
2295 2320 6.278363 ACGTTTCTTATATGCCGAATAGTGT 58.722 36.000 0.00 0.00 0.00 3.55
2296 2321 6.764877 ACGTTTCTTATATGCCGAATAGTG 57.235 37.500 0.00 0.00 0.00 2.74
2297 2322 7.709613 AGAAACGTTTCTTATATGCCGAATAGT 59.290 33.333 32.60 9.30 44.70 2.12
2298 2323 8.073355 AGAAACGTTTCTTATATGCCGAATAG 57.927 34.615 32.60 0.00 44.70 1.73
2299 2324 8.971321 GTAGAAACGTTTCTTATATGCCGAATA 58.029 33.333 39.66 19.82 44.70 1.75
2300 2325 6.920569 AGAAACGTTTCTTATATGCCGAAT 57.079 33.333 32.60 10.67 44.70 3.34
2301 2326 6.812656 TGTAGAAACGTTTCTTATATGCCGAA 59.187 34.615 39.66 20.46 44.70 4.30
2302 2327 6.254157 GTGTAGAAACGTTTCTTATATGCCGA 59.746 38.462 39.66 21.11 44.70 5.54
2303 2328 6.408428 GTGTAGAAACGTTTCTTATATGCCG 58.592 40.000 39.66 0.00 44.70 5.69
2304 2329 6.408428 CGTGTAGAAACGTTTCTTATATGCC 58.592 40.000 39.66 22.24 44.70 4.40
2305 2330 6.254157 TCCGTGTAGAAACGTTTCTTATATGC 59.746 38.462 39.66 23.35 44.70 3.14
2306 2331 7.745022 TCCGTGTAGAAACGTTTCTTATATG 57.255 36.000 39.66 29.08 44.70 1.78
2307 2332 8.814235 CAATCCGTGTAGAAACGTTTCTTATAT 58.186 33.333 39.66 23.85 44.70 0.86
2308 2333 7.814107 ACAATCCGTGTAGAAACGTTTCTTATA 59.186 33.333 39.66 25.83 46.01 0.98
2309 2334 6.647895 ACAATCCGTGTAGAAACGTTTCTTAT 59.352 34.615 39.66 23.51 46.01 1.73
2310 2335 5.984926 ACAATCCGTGTAGAAACGTTTCTTA 59.015 36.000 39.66 28.22 46.01 2.10
2311 2336 4.812626 ACAATCCGTGTAGAAACGTTTCTT 59.187 37.500 39.66 26.17 46.01 2.52
2313 2338 4.446719 AGACAATCCGTGTAGAAACGTTTC 59.553 41.667 29.36 29.36 41.96 2.78
2314 2339 4.374399 AGACAATCCGTGTAGAAACGTTT 58.626 39.130 14.57 14.57 41.96 3.60
2315 2340 3.986277 AGACAATCCGTGTAGAAACGTT 58.014 40.909 0.00 0.00 41.96 3.99
2316 2341 3.655276 AGACAATCCGTGTAGAAACGT 57.345 42.857 0.00 0.00 41.96 3.99
2317 2342 3.059044 CGAAGACAATCCGTGTAGAAACG 59.941 47.826 0.00 0.00 41.96 3.60
2318 2343 3.985925 ACGAAGACAATCCGTGTAGAAAC 59.014 43.478 0.00 0.00 41.96 2.78
2319 2344 4.022589 AGACGAAGACAATCCGTGTAGAAA 60.023 41.667 0.00 0.00 41.96 2.52
2320 2345 3.504906 AGACGAAGACAATCCGTGTAGAA 59.495 43.478 0.00 0.00 41.96 2.10
2321 2346 3.079578 AGACGAAGACAATCCGTGTAGA 58.920 45.455 0.00 0.00 41.96 2.59
2322 2347 3.427243 GAGACGAAGACAATCCGTGTAG 58.573 50.000 0.00 0.00 41.96 2.74
2323 2348 2.159612 CGAGACGAAGACAATCCGTGTA 60.160 50.000 0.00 0.00 41.96 2.90
2324 2349 1.401148 CGAGACGAAGACAATCCGTGT 60.401 52.381 0.00 0.00 45.74 4.49
2325 2350 1.260206 CGAGACGAAGACAATCCGTG 58.740 55.000 0.00 0.00 36.60 4.94
2326 2351 0.879765 ACGAGACGAAGACAATCCGT 59.120 50.000 0.00 0.00 39.41 4.69
2327 2352 1.536149 GACGAGACGAAGACAATCCG 58.464 55.000 0.00 0.00 0.00 4.18
2328 2353 1.129998 TCGACGAGACGAAGACAATCC 59.870 52.381 0.00 0.00 39.34 3.01
2329 2354 2.522372 TCGACGAGACGAAGACAATC 57.478 50.000 0.00 0.00 39.34 2.67
2330 2355 2.983402 TTCGACGAGACGAAGACAAT 57.017 45.000 6.33 0.00 45.21 2.71
2368 2393 9.763465 CATACAAATACCGATTTAGACGTTTTT 57.237 29.630 0.00 0.00 33.33 1.94
2369 2394 7.906527 GCATACAAATACCGATTTAGACGTTTT 59.093 33.333 0.00 0.00 33.33 2.43
2370 2395 7.064847 TGCATACAAATACCGATTTAGACGTTT 59.935 33.333 0.00 0.00 33.33 3.60
2371 2396 6.535865 TGCATACAAATACCGATTTAGACGTT 59.464 34.615 0.00 0.00 33.33 3.99
2372 2397 6.044046 TGCATACAAATACCGATTTAGACGT 58.956 36.000 0.00 0.00 33.33 4.34
2373 2398 6.519353 TGCATACAAATACCGATTTAGACG 57.481 37.500 0.00 0.00 33.33 4.18
2374 2399 9.221775 CTTTTGCATACAAATACCGATTTAGAC 57.778 33.333 0.00 0.00 44.96 2.59
2375 2400 8.952278 ACTTTTGCATACAAATACCGATTTAGA 58.048 29.630 0.00 0.00 44.96 2.10
2376 2401 9.567848 AACTTTTGCATACAAATACCGATTTAG 57.432 29.630 0.00 0.00 44.96 1.85
2378 2403 9.567848 CTAACTTTTGCATACAAATACCGATTT 57.432 29.630 0.00 0.00 44.96 2.17
2379 2404 8.952278 TCTAACTTTTGCATACAAATACCGATT 58.048 29.630 0.00 0.00 44.96 3.34
2380 2405 8.500753 TCTAACTTTTGCATACAAATACCGAT 57.499 30.769 0.00 0.00 44.96 4.18
2381 2406 7.413657 GCTCTAACTTTTGCATACAAATACCGA 60.414 37.037 0.00 0.00 44.96 4.69
2382 2407 6.687105 GCTCTAACTTTTGCATACAAATACCG 59.313 38.462 0.00 0.00 44.96 4.02
2383 2408 6.972901 GGCTCTAACTTTTGCATACAAATACC 59.027 38.462 0.00 0.00 44.96 2.73
2384 2409 7.535139 TGGCTCTAACTTTTGCATACAAATAC 58.465 34.615 0.00 0.00 44.96 1.89
2385 2410 7.695480 TGGCTCTAACTTTTGCATACAAATA 57.305 32.000 0.00 0.00 44.96 1.40
2386 2411 6.588719 TGGCTCTAACTTTTGCATACAAAT 57.411 33.333 0.00 0.00 44.96 2.32
2387 2412 6.398234 TTGGCTCTAACTTTTGCATACAAA 57.602 33.333 0.00 0.00 43.97 2.83
2388 2413 6.398234 TTTGGCTCTAACTTTTGCATACAA 57.602 33.333 0.00 0.00 0.00 2.41
2389 2414 6.398234 TTTTGGCTCTAACTTTTGCATACA 57.602 33.333 0.00 0.00 0.00 2.29
2390 2415 6.311200 CCATTTTGGCTCTAACTTTTGCATAC 59.689 38.462 0.00 0.00 0.00 2.39
2391 2416 6.014669 ACCATTTTGGCTCTAACTTTTGCATA 60.015 34.615 0.00 0.00 42.67 3.14
2392 2417 5.221702 ACCATTTTGGCTCTAACTTTTGCAT 60.222 36.000 0.00 0.00 42.67 3.96
2393 2418 4.100808 ACCATTTTGGCTCTAACTTTTGCA 59.899 37.500 0.00 0.00 42.67 4.08
2394 2419 4.448732 CACCATTTTGGCTCTAACTTTTGC 59.551 41.667 0.00 0.00 42.67 3.68
2395 2420 5.463061 CACACCATTTTGGCTCTAACTTTTG 59.537 40.000 0.00 0.00 42.67 2.44
2396 2421 5.600696 CACACCATTTTGGCTCTAACTTTT 58.399 37.500 0.00 0.00 42.67 2.27
2397 2422 4.501400 GCACACCATTTTGGCTCTAACTTT 60.501 41.667 0.00 0.00 42.67 2.66
2398 2423 3.005791 GCACACCATTTTGGCTCTAACTT 59.994 43.478 0.00 0.00 42.67 2.66
2399 2424 2.558359 GCACACCATTTTGGCTCTAACT 59.442 45.455 0.00 0.00 42.67 2.24
2400 2425 2.558359 AGCACACCATTTTGGCTCTAAC 59.442 45.455 0.00 0.00 42.67 2.34
2401 2426 2.875296 AGCACACCATTTTGGCTCTAA 58.125 42.857 0.00 0.00 42.67 2.10
2402 2427 2.584835 AGCACACCATTTTGGCTCTA 57.415 45.000 0.00 0.00 42.67 2.43
2403 2428 2.584835 TAGCACACCATTTTGGCTCT 57.415 45.000 0.00 0.00 42.67 4.09
2404 2429 6.263168 ACTTATATAGCACACCATTTTGGCTC 59.737 38.462 0.00 0.00 42.67 4.70
2405 2430 6.129179 ACTTATATAGCACACCATTTTGGCT 58.871 36.000 0.00 0.00 42.67 4.75
2406 2431 6.263168 AGACTTATATAGCACACCATTTTGGC 59.737 38.462 0.00 0.00 42.67 4.52
2407 2432 7.642669 CAGACTTATATAGCACACCATTTTGG 58.357 38.462 0.00 0.00 45.02 3.28
2408 2433 7.134815 GCAGACTTATATAGCACACCATTTTG 58.865 38.462 0.00 0.00 0.00 2.44
2409 2434 6.263168 GGCAGACTTATATAGCACACCATTTT 59.737 38.462 0.00 0.00 0.00 1.82
2410 2435 5.765182 GGCAGACTTATATAGCACACCATTT 59.235 40.000 0.00 0.00 0.00 2.32
2411 2436 5.308825 GGCAGACTTATATAGCACACCATT 58.691 41.667 0.00 0.00 0.00 3.16
2412 2437 4.263068 GGGCAGACTTATATAGCACACCAT 60.263 45.833 0.00 0.00 0.00 3.55
2413 2438 3.071023 GGGCAGACTTATATAGCACACCA 59.929 47.826 0.00 0.00 0.00 4.17
2414 2439 3.557264 GGGGCAGACTTATATAGCACACC 60.557 52.174 0.00 0.00 0.00 4.16
2415 2440 3.665190 GGGGCAGACTTATATAGCACAC 58.335 50.000 0.00 0.00 0.00 3.82
2416 2441 2.299013 CGGGGCAGACTTATATAGCACA 59.701 50.000 0.00 0.00 0.00 4.57
2417 2442 2.353803 CCGGGGCAGACTTATATAGCAC 60.354 54.545 0.00 0.00 0.00 4.40
2418 2443 1.899814 CCGGGGCAGACTTATATAGCA 59.100 52.381 0.00 0.00 0.00 3.49
2419 2444 2.176889 TCCGGGGCAGACTTATATAGC 58.823 52.381 0.00 0.00 0.00 2.97
2420 2445 3.833070 ACTTCCGGGGCAGACTTATATAG 59.167 47.826 0.00 0.00 0.00 1.31
2421 2446 3.853207 ACTTCCGGGGCAGACTTATATA 58.147 45.455 0.00 0.00 0.00 0.86
2422 2447 2.690840 ACTTCCGGGGCAGACTTATAT 58.309 47.619 0.00 0.00 0.00 0.86
2423 2448 2.170012 ACTTCCGGGGCAGACTTATA 57.830 50.000 0.00 0.00 0.00 0.98
2424 2449 1.209747 GAACTTCCGGGGCAGACTTAT 59.790 52.381 0.00 0.00 0.00 1.73
2425 2450 0.611714 GAACTTCCGGGGCAGACTTA 59.388 55.000 0.00 0.00 0.00 2.24
2426 2451 1.375326 GAACTTCCGGGGCAGACTT 59.625 57.895 0.00 0.00 0.00 3.01
2427 2452 2.593956 GGAACTTCCGGGGCAGACT 61.594 63.158 0.00 0.00 0.00 3.24
2428 2453 2.046217 GGAACTTCCGGGGCAGAC 60.046 66.667 0.00 0.00 0.00 3.51
2446 2471 0.608308 CCTCCCCGGAAGTTTTGTCC 60.608 60.000 0.73 0.00 33.16 4.02
2447 2472 0.109913 ACCTCCCCGGAAGTTTTGTC 59.890 55.000 0.73 0.00 36.31 3.18
2448 2473 0.554305 AACCTCCCCGGAAGTTTTGT 59.446 50.000 0.73 0.00 36.31 2.83
2449 2474 0.958822 CAACCTCCCCGGAAGTTTTG 59.041 55.000 0.73 2.26 36.31 2.44
2450 2475 0.826256 GCAACCTCCCCGGAAGTTTT 60.826 55.000 0.73 0.00 36.31 2.43
2451 2476 1.228459 GCAACCTCCCCGGAAGTTT 60.228 57.895 0.73 0.00 36.31 2.66
2452 2477 2.434774 GCAACCTCCCCGGAAGTT 59.565 61.111 0.73 0.00 36.31 2.66
2453 2478 4.016706 CGCAACCTCCCCGGAAGT 62.017 66.667 0.73 0.00 36.31 3.01
2454 2479 4.778143 CCGCAACCTCCCCGGAAG 62.778 72.222 0.73 0.00 44.55 3.46
2459 2484 3.699134 CTTAGCCCGCAACCTCCCC 62.699 68.421 0.00 0.00 0.00 4.81
2460 2485 2.124695 CTTAGCCCGCAACCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
2461 2486 2.824489 GCTTAGCCCGCAACCTCC 60.824 66.667 0.00 0.00 0.00 4.30
2462 2487 2.046314 TGCTTAGCCCGCAACCTC 60.046 61.111 0.29 0.00 33.87 3.85
2463 2488 2.045926 CTGCTTAGCCCGCAACCT 60.046 61.111 0.29 0.00 36.88 3.50
2464 2489 1.241315 TTTCTGCTTAGCCCGCAACC 61.241 55.000 0.29 0.00 36.88 3.77
2465 2490 0.109735 GTTTCTGCTTAGCCCGCAAC 60.110 55.000 0.29 0.00 36.88 4.17
2466 2491 0.250727 AGTTTCTGCTTAGCCCGCAA 60.251 50.000 0.29 0.00 36.88 4.85
2467 2492 0.250727 AAGTTTCTGCTTAGCCCGCA 60.251 50.000 0.29 0.00 35.80 5.69
2468 2493 0.881796 AAAGTTTCTGCTTAGCCCGC 59.118 50.000 0.29 0.00 0.00 6.13
2469 2494 1.401539 GCAAAGTTTCTGCTTAGCCCG 60.402 52.381 0.29 0.00 36.84 6.13
2470 2495 1.613437 TGCAAAGTTTCTGCTTAGCCC 59.387 47.619 0.29 0.00 40.59 5.19
2471 2496 2.666026 GTGCAAAGTTTCTGCTTAGCC 58.334 47.619 0.29 0.00 40.59 3.93
2472 2497 2.310577 CGTGCAAAGTTTCTGCTTAGC 58.689 47.619 0.00 0.00 40.59 3.09
2473 2498 2.310577 GCGTGCAAAGTTTCTGCTTAG 58.689 47.619 0.00 0.00 40.59 2.18
2474 2499 1.333702 CGCGTGCAAAGTTTCTGCTTA 60.334 47.619 0.00 0.00 40.59 3.09
2475 2500 0.592247 CGCGTGCAAAGTTTCTGCTT 60.592 50.000 0.00 0.00 40.59 3.91
2476 2501 1.009675 CGCGTGCAAAGTTTCTGCT 60.010 52.632 0.00 0.00 40.59 4.24
2477 2502 2.010817 CCGCGTGCAAAGTTTCTGC 61.011 57.895 4.92 0.00 40.35 4.26
2478 2503 0.929824 CACCGCGTGCAAAGTTTCTG 60.930 55.000 4.92 0.00 0.00 3.02
2479 2504 1.355210 CACCGCGTGCAAAGTTTCT 59.645 52.632 4.92 0.00 0.00 2.52
2480 2505 1.063488 ACACCGCGTGCAAAGTTTC 59.937 52.632 4.92 0.00 36.98 2.78
2481 2506 1.226547 CACACCGCGTGCAAAGTTT 60.227 52.632 4.92 0.00 39.19 2.66
2482 2507 2.407210 CACACCGCGTGCAAAGTT 59.593 55.556 4.92 0.00 39.19 2.66
2494 2519 1.104577 TTCAGTTTTCGGGGCACACC 61.105 55.000 0.00 0.00 39.11 4.16
2495 2520 0.741915 TTTCAGTTTTCGGGGCACAC 59.258 50.000 0.00 0.00 0.00 3.82
2496 2521 1.698506 ATTTCAGTTTTCGGGGCACA 58.301 45.000 0.00 0.00 0.00 4.57
2497 2522 2.812358 AATTTCAGTTTTCGGGGCAC 57.188 45.000 0.00 0.00 0.00 5.01
2498 2523 2.695666 TGAAATTTCAGTTTTCGGGGCA 59.304 40.909 16.91 0.00 36.16 5.36
2499 2524 3.378911 TGAAATTTCAGTTTTCGGGGC 57.621 42.857 16.91 0.00 36.16 5.80
2500 2525 9.816354 ATAATATTGAAATTTCAGTTTTCGGGG 57.184 29.630 19.71 0.00 38.61 5.73
2530 2555 2.063541 GATTCGGGCCCGCAAATCTG 62.064 60.000 34.79 15.21 39.59 2.90
2531 2556 1.823899 GATTCGGGCCCGCAAATCT 60.824 57.895 34.79 17.50 39.59 2.40
2532 2557 2.721859 GATTCGGGCCCGCAAATC 59.278 61.111 39.89 34.83 39.59 2.17
2533 2558 2.833121 GGATTCGGGCCCGCAAAT 60.833 61.111 39.89 32.42 39.59 2.32
2534 2559 4.352607 TGGATTCGGGCCCGCAAA 62.353 61.111 39.89 29.17 39.59 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.