Multiple sequence alignment - TraesCS5B01G237400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G237400 chr5B 100.000 2855 0 0 1 2855 418375702 418372848 0.000000e+00 5273.0
1 TraesCS5B01G237400 chr5B 84.694 1176 118 33 727 1874 419643983 419645124 0.000000e+00 1118.0
2 TraesCS5B01G237400 chr5B 97.368 342 8 1 2347 2687 430166746 430167087 5.300000e-162 580.0
3 TraesCS5B01G237400 chr5B 86.667 240 21 10 1568 1796 419620473 419620712 3.650000e-64 255.0
4 TraesCS5B01G237400 chr5B 86.471 170 17 3 2182 2346 662143 661975 6.280000e-42 182.0
5 TraesCS5B01G237400 chr5A 91.015 1625 96 25 435 2028 454817763 454816158 0.000000e+00 2146.0
6 TraesCS5B01G237400 chr5A 83.788 1172 116 33 733 1874 457003406 457004533 0.000000e+00 1044.0
7 TraesCS5B01G237400 chr5A 78.718 733 94 28 1067 1789 456974799 456975479 1.570000e-117 433.0
8 TraesCS5B01G237400 chr5A 83.043 460 63 9 1 448 454818403 454817947 1.230000e-108 403.0
9 TraesCS5B01G237400 chr5D 93.255 1364 62 13 688 2028 354031868 354030512 0.000000e+00 1982.0
10 TraesCS5B01G237400 chr5D 85.320 1158 104 30 729 1874 354890813 354891916 0.000000e+00 1136.0
11 TraesCS5B01G237400 chr5D 94.811 212 11 0 1568 1779 354837331 354837542 5.900000e-87 331.0
12 TraesCS5B01G237400 chr5D 92.500 120 9 0 2161 2280 530428310 530428429 3.780000e-39 172.0
13 TraesCS5B01G237400 chr5D 89.744 117 9 3 2165 2279 480605200 480605315 2.290000e-31 147.0
14 TraesCS5B01G237400 chr5D 92.045 88 7 0 2259 2346 299406174 299406087 1.070000e-24 124.0
15 TraesCS5B01G237400 chr4B 97.287 516 12 2 2341 2855 613037716 613038230 0.000000e+00 874.0
16 TraesCS5B01G237400 chr4B 84.314 153 18 3 2163 2314 126324476 126324623 8.240000e-31 145.0
17 TraesCS5B01G237400 chr4B 87.156 109 11 3 2238 2345 107663081 107662975 1.390000e-23 121.0
18 TraesCS5B01G237400 chr3B 97.446 509 13 0 2347 2855 188463683 188464191 0.000000e+00 869.0
19 TraesCS5B01G237400 chr3B 96.498 514 13 1 2347 2855 188491746 188492259 0.000000e+00 845.0
20 TraesCS5B01G237400 chr3B 91.667 108 8 1 2179 2285 421903057 421902950 6.370000e-32 148.0
21 TraesCS5B01G237400 chr1B 97.053 509 15 0 2347 2855 29268172 29268680 0.000000e+00 857.0
22 TraesCS5B01G237400 chr3A 96.857 509 16 0 2347 2855 728056519 728056011 0.000000e+00 852.0
23 TraesCS5B01G237400 chr3A 88.235 187 22 0 2161 2347 531452018 531452204 1.030000e-54 224.0
24 TraesCS5B01G237400 chrUn 97.953 342 6 1 2347 2687 342508104 342507763 2.450000e-165 592.0
25 TraesCS5B01G237400 chrUn 97.953 342 6 1 2347 2687 399642073 399642414 2.450000e-165 592.0
26 TraesCS5B01G237400 chr6A 97.368 342 8 1 2347 2687 228524255 228523914 5.300000e-162 580.0
27 TraesCS5B01G237400 chr7D 90.533 169 16 0 2685 2853 220315239 220315407 1.030000e-54 224.0
28 TraesCS5B01G237400 chr7D 91.011 89 8 0 2258 2346 54373432 54373520 1.390000e-23 121.0
29 TraesCS5B01G237400 chr6B 88.525 183 20 1 2163 2345 283316605 283316786 1.330000e-53 220.0
30 TraesCS5B01G237400 chr3D 87.898 157 17 1 2161 2317 520722603 520722757 1.750000e-42 183.0
31 TraesCS5B01G237400 chr4D 94.059 101 6 0 2181 2281 177433204 177433304 1.370000e-33 154.0
32 TraesCS5B01G237400 chr1D 88.991 109 12 0 2239 2347 76975372 76975264 4.960000e-28 135.0
33 TraesCS5B01G237400 chr1A 90.816 98 6 3 2250 2346 551875741 551875836 8.300000e-26 128.0
34 TraesCS5B01G237400 chr7B 91.111 90 8 0 2258 2347 736300466 736300377 3.860000e-24 122.0
35 TraesCS5B01G237400 chr2A 95.238 42 2 0 2159 2200 31088733 31088774 1.840000e-07 67.6
36 TraesCS5B01G237400 chr2B 93.182 44 3 0 2158 2201 474405777 474405734 6.600000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G237400 chr5B 418372848 418375702 2854 True 5273.0 5273 100.000 1 2855 1 chr5B.!!$R2 2854
1 TraesCS5B01G237400 chr5B 419643983 419645124 1141 False 1118.0 1118 84.694 727 1874 1 chr5B.!!$F2 1147
2 TraesCS5B01G237400 chr5A 454816158 454818403 2245 True 1274.5 2146 87.029 1 2028 2 chr5A.!!$R1 2027
3 TraesCS5B01G237400 chr5A 457003406 457004533 1127 False 1044.0 1044 83.788 733 1874 1 chr5A.!!$F2 1141
4 TraesCS5B01G237400 chr5A 456974799 456975479 680 False 433.0 433 78.718 1067 1789 1 chr5A.!!$F1 722
5 TraesCS5B01G237400 chr5D 354030512 354031868 1356 True 1982.0 1982 93.255 688 2028 1 chr5D.!!$R2 1340
6 TraesCS5B01G237400 chr5D 354890813 354891916 1103 False 1136.0 1136 85.320 729 1874 1 chr5D.!!$F2 1145
7 TraesCS5B01G237400 chr4B 613037716 613038230 514 False 874.0 874 97.287 2341 2855 1 chr4B.!!$F2 514
8 TraesCS5B01G237400 chr3B 188463683 188464191 508 False 869.0 869 97.446 2347 2855 1 chr3B.!!$F1 508
9 TraesCS5B01G237400 chr3B 188491746 188492259 513 False 845.0 845 96.498 2347 2855 1 chr3B.!!$F2 508
10 TraesCS5B01G237400 chr1B 29268172 29268680 508 False 857.0 857 97.053 2347 2855 1 chr1B.!!$F1 508
11 TraesCS5B01G237400 chr3A 728056011 728056519 508 True 852.0 852 96.857 2347 2855 1 chr3A.!!$R1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 80 0.388006 GCGTGGATTTTTGGGAACGG 60.388 55.0 0.0 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 2340 0.181114 AGAACAGCAAGACCACAGCA 59.819 50.0 0.0 0.0 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.601546 AGCAATTTTTGGTGGGATAAAATAAGA 58.398 29.630 0.00 0.00 40.37 2.10
53 54 7.365497 AGAAAAATCTTCTTGGGTGAATGTT 57.635 32.000 0.00 0.00 0.00 2.71
65 67 2.143122 GTGAATGTTCTTGAGCGTGGA 58.857 47.619 0.00 0.00 0.00 4.02
72 74 3.243367 TGTTCTTGAGCGTGGATTTTTGG 60.243 43.478 0.00 0.00 0.00 3.28
74 76 1.885887 CTTGAGCGTGGATTTTTGGGA 59.114 47.619 0.00 0.00 0.00 4.37
75 77 1.988293 TGAGCGTGGATTTTTGGGAA 58.012 45.000 0.00 0.00 0.00 3.97
76 78 1.611491 TGAGCGTGGATTTTTGGGAAC 59.389 47.619 0.00 0.00 0.00 3.62
77 79 0.596082 AGCGTGGATTTTTGGGAACG 59.404 50.000 0.00 0.00 0.00 3.95
78 80 0.388006 GCGTGGATTTTTGGGAACGG 60.388 55.000 0.00 0.00 0.00 4.44
83 87 2.107552 TGGATTTTTGGGAACGGTCTCT 59.892 45.455 0.03 0.00 0.00 3.10
84 88 3.154710 GGATTTTTGGGAACGGTCTCTT 58.845 45.455 0.03 0.00 0.00 2.85
87 91 1.961793 TTTGGGAACGGTCTCTTGTG 58.038 50.000 0.03 0.00 0.00 3.33
92 96 1.865340 GGAACGGTCTCTTGTGTGTTC 59.135 52.381 0.00 0.00 36.02 3.18
95 99 1.340248 ACGGTCTCTTGTGTGTTCGAT 59.660 47.619 0.00 0.00 0.00 3.59
97 101 2.338500 GGTCTCTTGTGTGTTCGATCC 58.662 52.381 0.00 0.00 0.00 3.36
98 102 2.338500 GTCTCTTGTGTGTTCGATCCC 58.662 52.381 0.00 0.00 0.00 3.85
102 106 0.669318 TTGTGTGTTCGATCCCGCTC 60.669 55.000 0.00 0.00 35.37 5.03
103 107 1.810030 GTGTGTTCGATCCCGCTCC 60.810 63.158 0.00 0.00 35.37 4.70
116 120 1.643832 CGCTCCCGCATCTTAAAGC 59.356 57.895 0.00 0.00 35.30 3.51
117 121 1.089481 CGCTCCCGCATCTTAAAGCA 61.089 55.000 0.00 0.00 35.30 3.91
120 124 2.878406 GCTCCCGCATCTTAAAGCAATA 59.122 45.455 0.00 0.00 35.78 1.90
122 126 4.555511 GCTCCCGCATCTTAAAGCAATAAG 60.556 45.833 2.93 2.93 33.91 1.73
123 127 4.523083 TCCCGCATCTTAAAGCAATAAGT 58.477 39.130 7.99 0.00 35.01 2.24
124 128 4.335315 TCCCGCATCTTAAAGCAATAAGTG 59.665 41.667 7.99 7.25 35.01 3.16
136 140 2.418609 GCAATAAGTGGTGGCAATTCCC 60.419 50.000 0.00 0.00 0.00 3.97
141 145 1.305971 TGGTGGCAATTCCCATGGG 60.306 57.895 26.30 26.30 37.20 4.00
148 152 1.682005 AATTCCCATGGGCACACCG 60.682 57.895 27.41 0.00 44.64 4.94
161 165 2.819595 CACCGTTCGCTCCCATGG 60.820 66.667 4.14 4.14 0.00 3.66
169 173 2.370445 CGCTCCCATGGACCCTCTT 61.370 63.158 15.22 0.00 0.00 2.85
170 174 1.529309 GCTCCCATGGACCCTCTTC 59.471 63.158 15.22 0.00 0.00 2.87
185 189 2.289694 CCTCTTCAGGGAACGACACAAT 60.290 50.000 0.00 0.00 35.89 2.71
188 192 3.007940 TCTTCAGGGAACGACACAATCAT 59.992 43.478 0.00 0.00 0.00 2.45
190 194 3.750371 TCAGGGAACGACACAATCATTT 58.250 40.909 0.00 0.00 0.00 2.32
216 220 3.270027 CCATACAACATCCTGAGCGAAA 58.730 45.455 0.00 0.00 0.00 3.46
221 225 1.270907 ACATCCTGAGCGAAAGACCT 58.729 50.000 0.00 0.00 0.00 3.85
230 234 3.182967 GAGCGAAAGACCTCATGTGTAG 58.817 50.000 0.00 0.00 0.00 2.74
251 255 2.501261 CATGCACACTCCCCTATGATG 58.499 52.381 0.00 0.00 0.00 3.07
262 266 4.170449 TCCCCTATGATGTAGCATGACAT 58.830 43.478 0.00 0.00 42.82 3.06
263 267 4.598807 TCCCCTATGATGTAGCATGACATT 59.401 41.667 0.00 0.00 40.18 2.71
268 272 7.118825 CCCTATGATGTAGCATGACATTTACTG 59.881 40.741 0.00 0.00 40.18 2.74
276 280 7.552330 TGTAGCATGACATTTACTGAAAGCATA 59.448 33.333 0.00 0.00 37.60 3.14
277 281 7.024340 AGCATGACATTTACTGAAAGCATAG 57.976 36.000 0.00 0.00 37.60 2.23
291 295 9.849279 ACTGAAAGCATAGATGGCAACTTCTCA 62.849 40.741 1.54 0.00 42.38 3.27
302 314 2.808543 GCAACTTCTCAGGACAATTCGT 59.191 45.455 0.00 0.00 0.00 3.85
327 339 1.546923 CTGCAACATGGCAATTCCTGA 59.453 47.619 0.00 0.00 44.40 3.86
366 378 2.040412 CCTTCTCTTAGCCCACCACTTT 59.960 50.000 0.00 0.00 0.00 2.66
393 405 3.009723 ACTACAGCATGACAAATTCCGG 58.990 45.455 0.00 0.00 39.69 5.14
404 416 4.522405 TGACAAATTCCGGAAACACATGAT 59.478 37.500 23.08 0.00 0.00 2.45
413 425 7.083875 TCCGGAAACACATGATAATTTTCTC 57.916 36.000 0.00 0.00 0.00 2.87
414 426 5.965334 CCGGAAACACATGATAATTTTCTCG 59.035 40.000 0.00 6.48 0.00 4.04
430 442 6.438259 TTTTCTCGGTTGTTGTATGACAAA 57.562 33.333 0.00 0.00 40.15 2.83
432 444 6.627395 TTCTCGGTTGTTGTATGACAAATT 57.373 33.333 0.00 0.00 40.15 1.82
433 445 7.731882 TTCTCGGTTGTTGTATGACAAATTA 57.268 32.000 0.00 0.00 40.15 1.40
461 670 8.786898 TCTACTATAGCATGGCATTGATTTTTC 58.213 33.333 0.00 0.00 0.00 2.29
464 673 9.135189 ACTATAGCATGGCATTGATTTTTCTTA 57.865 29.630 0.00 0.00 0.00 2.10
465 674 9.622004 CTATAGCATGGCATTGATTTTTCTTAG 57.378 33.333 0.00 0.00 0.00 2.18
466 675 5.114081 AGCATGGCATTGATTTTTCTTAGC 58.886 37.500 0.00 0.00 0.00 3.09
469 682 6.511121 GCATGGCATTGATTTTTCTTAGCATG 60.511 38.462 0.00 0.00 0.00 4.06
484 697 8.846943 TTCTTAGCATGACAAATTTCTCTGTA 57.153 30.769 0.00 0.00 0.00 2.74
523 738 6.590068 AGCTCTGTTATAGCATGACAATTCT 58.410 36.000 0.00 0.00 42.62 2.40
575 790 6.211515 CAGAAATGTTCCCTGAGAGTTTTTG 58.788 40.000 0.00 0.00 0.00 2.44
577 792 6.381133 AGAAATGTTCCCTGAGAGTTTTTGTT 59.619 34.615 0.00 0.00 0.00 2.83
592 808 5.765677 AGTTTTTGTTAGGGAAAGCTCTCTC 59.234 40.000 0.00 0.00 33.13 3.20
593 809 4.974645 TTTGTTAGGGAAAGCTCTCTCA 57.025 40.909 0.00 0.00 33.13 3.27
598 814 1.480137 AGGGAAAGCTCTCTCATGACG 59.520 52.381 0.00 0.00 0.00 4.35
605 821 1.269309 GCTCTCTCATGACGCCGTTAT 60.269 52.381 0.00 0.00 0.00 1.89
612 828 2.034179 TCATGACGCCGTTATCTCGAAT 59.966 45.455 0.00 0.00 0.00 3.34
613 829 1.835121 TGACGCCGTTATCTCGAATG 58.165 50.000 0.00 0.00 0.00 2.67
616 832 0.778815 CGCCGTTATCTCGAATGAGC 59.221 55.000 0.00 0.00 42.26 4.26
619 835 2.030185 GCCGTTATCTCGAATGAGCCTA 60.030 50.000 0.00 0.00 42.26 3.93
627 843 1.136305 TCGAATGAGCCTACCGGAAAG 59.864 52.381 9.46 4.81 0.00 2.62
722 938 8.801882 ATGATTGCATCCAAATTGAGAAAAAT 57.198 26.923 0.00 0.00 34.05 1.82
785 1005 6.512177 AGCTCGAATATTTGTTACTTAGCG 57.488 37.500 2.57 0.00 0.00 4.26
794 1014 2.406130 TGTTACTTAGCGTTGAACCCG 58.594 47.619 0.00 0.00 0.00 5.28
798 1018 0.442699 CTTAGCGTTGAACCCGAAGC 59.557 55.000 0.00 0.00 0.00 3.86
893 1115 2.885164 TCATGCGCGTCCACATCG 60.885 61.111 8.43 0.00 0.00 3.84
1005 1245 2.045524 CAGAGGAGAGGCCACATACAT 58.954 52.381 5.01 0.00 40.02 2.29
1014 1285 1.131126 GGCCACATACATATCGCATGC 59.869 52.381 7.91 7.91 0.00 4.06
1153 1433 3.621225 TGCCTCATCAGGGAGACG 58.379 61.111 0.00 0.00 40.75 4.18
1246 1532 0.382158 ACGACGATGACATGCTCGAT 59.618 50.000 16.81 4.54 38.24 3.59
1504 1796 1.881903 CTCGAGCCCTGAGAAGTGCA 61.882 60.000 0.00 0.00 35.43 4.57
1538 1833 1.681486 GAGAAGGAAGAGGCGGAGGG 61.681 65.000 0.00 0.00 0.00 4.30
1919 2220 1.000506 GACACACCGACCTGCTTAGAA 59.999 52.381 0.00 0.00 0.00 2.10
1930 2231 4.368067 ACCTGCTTAGAATGGGGTAGTAA 58.632 43.478 0.00 0.00 0.00 2.24
1969 2273 3.252458 GGTATTTCGTTCAACCTTGCACT 59.748 43.478 0.00 0.00 0.00 4.40
1997 2301 1.004277 GGGGAGCACACCAAGATTACA 59.996 52.381 0.00 0.00 39.83 2.41
1998 2302 2.357154 GGGGAGCACACCAAGATTACAT 60.357 50.000 0.00 0.00 39.83 2.29
2025 2331 3.819337 TCTATACAGGGTACGAGATGTGC 59.181 47.826 0.00 0.00 0.00 4.57
2028 2334 0.248661 CAGGGTACGAGATGTGCGAG 60.249 60.000 0.00 0.00 33.41 5.03
2029 2335 0.393944 AGGGTACGAGATGTGCGAGA 60.394 55.000 0.00 0.00 33.41 4.04
2030 2336 0.029567 GGGTACGAGATGTGCGAGAG 59.970 60.000 0.00 0.00 33.41 3.20
2031 2337 0.733729 GGTACGAGATGTGCGAGAGT 59.266 55.000 0.00 0.00 33.41 3.24
2032 2338 1.532090 GGTACGAGATGTGCGAGAGTG 60.532 57.143 0.00 0.00 33.41 3.51
2033 2339 0.098905 TACGAGATGTGCGAGAGTGC 59.901 55.000 0.00 0.00 0.00 4.40
2034 2340 1.138459 CGAGATGTGCGAGAGTGCT 59.862 57.895 0.00 0.00 35.36 4.40
2035 2341 1.138636 CGAGATGTGCGAGAGTGCTG 61.139 60.000 0.00 0.00 35.36 4.41
2036 2342 1.419874 GAGATGTGCGAGAGTGCTGC 61.420 60.000 0.00 0.00 35.36 5.25
2037 2343 1.447489 GATGTGCGAGAGTGCTGCT 60.447 57.895 0.00 0.00 35.36 4.24
2038 2344 1.694018 GATGTGCGAGAGTGCTGCTG 61.694 60.000 0.00 0.00 35.36 4.41
2039 2345 2.356793 GTGCGAGAGTGCTGCTGT 60.357 61.111 0.00 0.00 35.36 4.40
2040 2346 2.356673 TGCGAGAGTGCTGCTGTG 60.357 61.111 0.00 0.00 35.36 3.66
2041 2347 3.117171 GCGAGAGTGCTGCTGTGG 61.117 66.667 0.00 0.00 0.00 4.17
2042 2348 2.341543 CGAGAGTGCTGCTGTGGT 59.658 61.111 0.00 0.00 0.00 4.16
2043 2349 1.735920 CGAGAGTGCTGCTGTGGTC 60.736 63.158 0.00 0.00 0.00 4.02
2044 2350 1.670590 GAGAGTGCTGCTGTGGTCT 59.329 57.895 0.00 0.00 0.00 3.85
2045 2351 0.034616 GAGAGTGCTGCTGTGGTCTT 59.965 55.000 0.00 0.00 0.00 3.01
2046 2352 0.250209 AGAGTGCTGCTGTGGTCTTG 60.250 55.000 0.00 0.00 0.00 3.02
2047 2353 1.849976 GAGTGCTGCTGTGGTCTTGC 61.850 60.000 0.00 0.00 0.00 4.01
2048 2354 1.895707 GTGCTGCTGTGGTCTTGCT 60.896 57.895 0.00 0.00 0.00 3.91
2049 2355 1.895231 TGCTGCTGTGGTCTTGCTG 60.895 57.895 0.00 0.00 0.00 4.41
2050 2356 1.895707 GCTGCTGTGGTCTTGCTGT 60.896 57.895 0.00 0.00 0.00 4.40
2051 2357 1.450531 GCTGCTGTGGTCTTGCTGTT 61.451 55.000 0.00 0.00 0.00 3.16
2052 2358 0.590195 CTGCTGTGGTCTTGCTGTTC 59.410 55.000 0.00 0.00 0.00 3.18
2053 2359 0.181114 TGCTGTGGTCTTGCTGTTCT 59.819 50.000 0.00 0.00 0.00 3.01
2054 2360 1.312815 GCTGTGGTCTTGCTGTTCTT 58.687 50.000 0.00 0.00 0.00 2.52
2055 2361 1.265365 GCTGTGGTCTTGCTGTTCTTC 59.735 52.381 0.00 0.00 0.00 2.87
2056 2362 2.843701 CTGTGGTCTTGCTGTTCTTCT 58.156 47.619 0.00 0.00 0.00 2.85
2057 2363 2.805099 CTGTGGTCTTGCTGTTCTTCTC 59.195 50.000 0.00 0.00 0.00 2.87
2058 2364 2.147150 GTGGTCTTGCTGTTCTTCTCC 58.853 52.381 0.00 0.00 0.00 3.71
2059 2365 2.050144 TGGTCTTGCTGTTCTTCTCCT 58.950 47.619 0.00 0.00 0.00 3.69
2060 2366 2.439507 TGGTCTTGCTGTTCTTCTCCTT 59.560 45.455 0.00 0.00 0.00 3.36
2061 2367 2.810852 GGTCTTGCTGTTCTTCTCCTTG 59.189 50.000 0.00 0.00 0.00 3.61
2062 2368 3.495100 GGTCTTGCTGTTCTTCTCCTTGA 60.495 47.826 0.00 0.00 0.00 3.02
2063 2369 4.130118 GTCTTGCTGTTCTTCTCCTTGAA 58.870 43.478 0.00 0.00 0.00 2.69
2075 2381 3.074412 TCTCCTTGAAGAATTTGTCCGC 58.926 45.455 0.00 0.00 0.00 5.54
2076 2382 1.804151 TCCTTGAAGAATTTGTCCGCG 59.196 47.619 0.00 0.00 0.00 6.46
2077 2383 1.535462 CCTTGAAGAATTTGTCCGCGT 59.465 47.619 4.92 0.00 0.00 6.01
2078 2384 2.739913 CCTTGAAGAATTTGTCCGCGTA 59.260 45.455 4.92 0.00 0.00 4.42
2079 2385 3.187637 CCTTGAAGAATTTGTCCGCGTAA 59.812 43.478 4.92 0.00 0.00 3.18
2080 2386 4.142687 CCTTGAAGAATTTGTCCGCGTAAT 60.143 41.667 4.92 0.00 0.00 1.89
2081 2387 4.593597 TGAAGAATTTGTCCGCGTAATC 57.406 40.909 4.92 0.00 0.00 1.75
2082 2388 3.061563 TGAAGAATTTGTCCGCGTAATCG 59.938 43.478 4.92 0.00 40.37 3.34
2083 2389 2.613691 AGAATTTGTCCGCGTAATCGT 58.386 42.857 4.92 0.00 39.49 3.73
2084 2390 3.772932 AGAATTTGTCCGCGTAATCGTA 58.227 40.909 4.92 0.00 39.49 3.43
2085 2391 4.175516 AGAATTTGTCCGCGTAATCGTAA 58.824 39.130 4.92 0.00 39.49 3.18
2086 2392 4.807304 AGAATTTGTCCGCGTAATCGTAAT 59.193 37.500 4.92 0.00 39.49 1.89
2087 2393 4.703899 ATTTGTCCGCGTAATCGTAATC 57.296 40.909 4.92 0.00 39.49 1.75
2088 2394 2.124011 TGTCCGCGTAATCGTAATCC 57.876 50.000 4.92 0.00 39.49 3.01
2089 2395 1.269206 TGTCCGCGTAATCGTAATCCC 60.269 52.381 4.92 0.00 39.49 3.85
2090 2396 1.031235 TCCGCGTAATCGTAATCCCA 58.969 50.000 4.92 0.00 39.49 4.37
2091 2397 1.001048 TCCGCGTAATCGTAATCCCAG 60.001 52.381 4.92 0.00 39.49 4.45
2092 2398 1.269413 CCGCGTAATCGTAATCCCAGT 60.269 52.381 4.92 0.00 39.49 4.00
2093 2399 2.030893 CCGCGTAATCGTAATCCCAGTA 60.031 50.000 4.92 0.00 39.49 2.74
2094 2400 3.550639 CCGCGTAATCGTAATCCCAGTAA 60.551 47.826 4.92 0.00 39.49 2.24
2095 2401 3.423206 CGCGTAATCGTAATCCCAGTAAC 59.577 47.826 0.00 0.00 39.49 2.50
2096 2402 4.614946 GCGTAATCGTAATCCCAGTAACT 58.385 43.478 0.00 0.00 39.49 2.24
2097 2403 4.443394 GCGTAATCGTAATCCCAGTAACTG 59.557 45.833 0.00 0.00 39.49 3.16
2098 2404 5.734220 GCGTAATCGTAATCCCAGTAACTGA 60.734 44.000 0.00 0.00 39.49 3.41
2099 2405 5.913514 CGTAATCGTAATCCCAGTAACTGAG 59.086 44.000 0.00 0.00 32.44 3.35
2100 2406 6.238566 CGTAATCGTAATCCCAGTAACTGAGA 60.239 42.308 0.00 0.00 32.44 3.27
2101 2407 6.732896 AATCGTAATCCCAGTAACTGAGAT 57.267 37.500 0.00 0.00 30.30 2.75
2102 2408 5.515797 TCGTAATCCCAGTAACTGAGATG 57.484 43.478 0.00 0.00 29.61 2.90
2103 2409 4.051922 CGTAATCCCAGTAACTGAGATGC 58.948 47.826 0.00 0.00 29.61 3.91
2104 2410 4.441495 CGTAATCCCAGTAACTGAGATGCA 60.441 45.833 0.00 0.00 29.61 3.96
2105 2411 3.550437 ATCCCAGTAACTGAGATGCAC 57.450 47.619 0.00 0.00 28.01 4.57
2106 2412 1.204704 TCCCAGTAACTGAGATGCACG 59.795 52.381 0.00 0.00 32.44 5.34
2107 2413 1.066858 CCCAGTAACTGAGATGCACGT 60.067 52.381 0.00 0.00 32.44 4.49
2108 2414 1.995484 CCAGTAACTGAGATGCACGTG 59.005 52.381 12.28 12.28 32.44 4.49
2109 2415 1.391485 CAGTAACTGAGATGCACGTGC 59.609 52.381 33.11 33.11 36.05 5.34
2110 2416 1.273606 AGTAACTGAGATGCACGTGCT 59.726 47.619 37.59 24.51 42.66 4.40
2111 2417 2.069273 GTAACTGAGATGCACGTGCTT 58.931 47.619 37.59 32.37 42.66 3.91
2112 2418 1.597742 AACTGAGATGCACGTGCTTT 58.402 45.000 37.59 26.23 42.66 3.51
2113 2419 1.151668 ACTGAGATGCACGTGCTTTC 58.848 50.000 37.59 31.31 42.66 2.62
2114 2420 1.270518 ACTGAGATGCACGTGCTTTCT 60.271 47.619 37.59 34.67 42.66 2.52
2115 2421 1.128136 CTGAGATGCACGTGCTTTCTG 59.872 52.381 35.19 28.03 42.66 3.02
2116 2422 1.270252 TGAGATGCACGTGCTTTCTGA 60.270 47.619 35.19 28.81 42.66 3.27
2117 2423 2.005451 GAGATGCACGTGCTTTCTGAT 58.995 47.619 35.19 24.24 42.66 2.90
2118 2424 2.417933 GAGATGCACGTGCTTTCTGATT 59.582 45.455 35.19 20.63 42.66 2.57
2119 2425 2.816087 AGATGCACGTGCTTTCTGATTT 59.184 40.909 37.59 16.54 42.66 2.17
2120 2426 3.254166 AGATGCACGTGCTTTCTGATTTT 59.746 39.130 37.59 16.23 42.66 1.82
2121 2427 2.998772 TGCACGTGCTTTCTGATTTTC 58.001 42.857 37.59 8.00 42.66 2.29
2122 2428 2.357323 TGCACGTGCTTTCTGATTTTCA 59.643 40.909 37.59 12.99 42.66 2.69
2123 2429 2.975851 GCACGTGCTTTCTGATTTTCAG 59.024 45.455 32.55 0.00 40.88 3.02
2124 2430 3.303990 GCACGTGCTTTCTGATTTTCAGA 60.304 43.478 32.55 3.14 43.78 3.27
2125 2431 5.132570 GCACGTGCTTTCTGATTTTCAGAG 61.133 45.833 32.55 0.00 44.93 3.35
2136 2442 5.244785 TGATTTTCAGAGCTGCATCAATC 57.755 39.130 1.02 1.78 0.00 2.67
2137 2443 4.703093 TGATTTTCAGAGCTGCATCAATCA 59.297 37.500 1.02 4.29 0.00 2.57
2138 2444 5.359860 TGATTTTCAGAGCTGCATCAATCAT 59.640 36.000 1.02 0.00 0.00 2.45
2139 2445 4.632538 TTTCAGAGCTGCATCAATCATG 57.367 40.909 1.02 0.00 35.29 3.07
2140 2446 3.553828 TCAGAGCTGCATCAATCATGA 57.446 42.857 1.02 0.00 40.57 3.07
2142 2448 5.223449 TCAGAGCTGCATCAATCATGATA 57.777 39.130 9.04 0.00 44.53 2.15
2143 2449 5.805728 TCAGAGCTGCATCAATCATGATAT 58.194 37.500 9.04 0.00 44.53 1.63
2144 2450 6.942976 TCAGAGCTGCATCAATCATGATATA 58.057 36.000 9.04 0.12 44.53 0.86
2145 2451 7.391620 TCAGAGCTGCATCAATCATGATATAA 58.608 34.615 9.04 0.00 44.53 0.98
2146 2452 8.047310 TCAGAGCTGCATCAATCATGATATAAT 58.953 33.333 9.04 0.17 44.53 1.28
2147 2453 8.678199 CAGAGCTGCATCAATCATGATATAATT 58.322 33.333 9.04 0.00 44.53 1.40
2148 2454 9.244292 AGAGCTGCATCAATCATGATATAATTT 57.756 29.630 9.04 0.00 44.53 1.82
2149 2455 9.856488 GAGCTGCATCAATCATGATATAATTTT 57.144 29.630 9.04 0.00 44.53 1.82
2172 2478 8.697846 TTTATTGTACACAAATACTCTCTCCG 57.302 34.615 0.00 0.00 39.55 4.63
2173 2479 5.717078 TTGTACACAAATACTCTCTCCGT 57.283 39.130 0.00 0.00 32.11 4.69
2174 2480 5.717078 TGTACACAAATACTCTCTCCGTT 57.283 39.130 0.00 0.00 0.00 4.44
2175 2481 5.706916 TGTACACAAATACTCTCTCCGTTC 58.293 41.667 0.00 0.00 0.00 3.95
2176 2482 4.189639 ACACAAATACTCTCTCCGTTCC 57.810 45.455 0.00 0.00 0.00 3.62
2177 2483 3.833070 ACACAAATACTCTCTCCGTTCCT 59.167 43.478 0.00 0.00 0.00 3.36
2178 2484 5.014858 ACACAAATACTCTCTCCGTTCCTA 58.985 41.667 0.00 0.00 0.00 2.94
2179 2485 5.479375 ACACAAATACTCTCTCCGTTCCTAA 59.521 40.000 0.00 0.00 0.00 2.69
2180 2486 6.014840 ACACAAATACTCTCTCCGTTCCTAAA 60.015 38.462 0.00 0.00 0.00 1.85
2181 2487 7.042335 CACAAATACTCTCTCCGTTCCTAAAT 58.958 38.462 0.00 0.00 0.00 1.40
2182 2488 8.195436 CACAAATACTCTCTCCGTTCCTAAATA 58.805 37.037 0.00 0.00 0.00 1.40
2183 2489 8.196103 ACAAATACTCTCTCCGTTCCTAAATAC 58.804 37.037 0.00 0.00 0.00 1.89
2184 2490 8.414778 CAAATACTCTCTCCGTTCCTAAATACT 58.585 37.037 0.00 0.00 0.00 2.12
2185 2491 7.748691 ATACTCTCTCCGTTCCTAAATACTC 57.251 40.000 0.00 0.00 0.00 2.59
2186 2492 4.888823 ACTCTCTCCGTTCCTAAATACTCC 59.111 45.833 0.00 0.00 0.00 3.85
2187 2493 4.213513 TCTCTCCGTTCCTAAATACTCCC 58.786 47.826 0.00 0.00 0.00 4.30
2188 2494 4.079327 TCTCTCCGTTCCTAAATACTCCCT 60.079 45.833 0.00 0.00 0.00 4.20
2189 2495 4.213513 TCTCCGTTCCTAAATACTCCCTC 58.786 47.826 0.00 0.00 0.00 4.30
2190 2496 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
2191 2497 2.035576 CCGTTCCTAAATACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
2192 2498 2.692041 CGTTCCTAAATACTCCCTCCGT 59.308 50.000 0.00 0.00 0.00 4.69
2193 2499 3.243334 CGTTCCTAAATACTCCCTCCGTC 60.243 52.174 0.00 0.00 0.00 4.79
2194 2500 2.954792 TCCTAAATACTCCCTCCGTCC 58.045 52.381 0.00 0.00 0.00 4.79
2195 2501 1.969208 CCTAAATACTCCCTCCGTCCC 59.031 57.143 0.00 0.00 0.00 4.46
2196 2502 2.674420 CTAAATACTCCCTCCGTCCCA 58.326 52.381 0.00 0.00 0.00 4.37
2197 2503 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
2198 2504 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2199 2505 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2200 2506 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2201 2507 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2202 2508 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2203 2509 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2204 2510 1.064979 TCCCTCCGTCCCAAAATAAGC 60.065 52.381 0.00 0.00 0.00 3.09
2205 2511 1.014352 CCTCCGTCCCAAAATAAGCG 58.986 55.000 0.00 0.00 0.00 4.68
2206 2512 1.677820 CCTCCGTCCCAAAATAAGCGT 60.678 52.381 0.00 0.00 0.00 5.07
2207 2513 1.664151 CTCCGTCCCAAAATAAGCGTC 59.336 52.381 0.00 0.00 0.00 5.19
2208 2514 1.276989 TCCGTCCCAAAATAAGCGTCT 59.723 47.619 0.00 0.00 0.00 4.18
2209 2515 2.081462 CCGTCCCAAAATAAGCGTCTT 58.919 47.619 0.00 0.00 0.00 3.01
2210 2516 2.159572 CCGTCCCAAAATAAGCGTCTTG 60.160 50.000 2.86 0.00 0.00 3.02
2211 2517 2.739913 CGTCCCAAAATAAGCGTCTTGA 59.260 45.455 2.86 0.00 0.00 3.02
2212 2518 3.424433 CGTCCCAAAATAAGCGTCTTGAC 60.424 47.826 2.86 0.00 0.00 3.18
2213 2519 3.078837 TCCCAAAATAAGCGTCTTGACC 58.921 45.455 2.86 0.00 0.00 4.02
2214 2520 3.081804 CCCAAAATAAGCGTCTTGACCT 58.918 45.455 2.86 0.00 0.00 3.85
2215 2521 3.506067 CCCAAAATAAGCGTCTTGACCTT 59.494 43.478 2.86 8.65 0.00 3.50
2216 2522 4.698304 CCCAAAATAAGCGTCTTGACCTTA 59.302 41.667 11.29 11.29 0.00 2.69
2217 2523 5.163754 CCCAAAATAAGCGTCTTGACCTTAG 60.164 44.000 13.13 0.00 0.00 2.18
2218 2524 5.411669 CCAAAATAAGCGTCTTGACCTTAGT 59.588 40.000 13.13 9.86 0.00 2.24
2219 2525 6.592607 CCAAAATAAGCGTCTTGACCTTAGTA 59.407 38.462 13.13 0.23 0.00 1.82
2220 2526 7.412672 CCAAAATAAGCGTCTTGACCTTAGTAC 60.413 40.741 13.13 0.00 0.00 2.73
2221 2527 5.909621 ATAAGCGTCTTGACCTTAGTACA 57.090 39.130 0.00 0.00 0.00 2.90
2222 2528 4.595762 AAGCGTCTTGACCTTAGTACAA 57.404 40.909 0.00 0.00 0.00 2.41
2223 2529 4.803098 AGCGTCTTGACCTTAGTACAAT 57.197 40.909 0.00 0.00 0.00 2.71
2224 2530 5.148651 AGCGTCTTGACCTTAGTACAATT 57.851 39.130 0.00 0.00 0.00 2.32
2225 2531 5.548406 AGCGTCTTGACCTTAGTACAATTT 58.452 37.500 0.00 0.00 0.00 1.82
2226 2532 5.995897 AGCGTCTTGACCTTAGTACAATTTT 59.004 36.000 0.00 0.00 0.00 1.82
2227 2533 7.156673 AGCGTCTTGACCTTAGTACAATTTTA 58.843 34.615 0.00 0.00 0.00 1.52
2228 2534 7.822822 AGCGTCTTGACCTTAGTACAATTTTAT 59.177 33.333 0.00 0.00 0.00 1.40
2229 2535 9.090692 GCGTCTTGACCTTAGTACAATTTTATA 57.909 33.333 0.00 0.00 0.00 0.98
2255 2561 9.310716 ACTAAAGTTAGTACAAAGTTGAGACAC 57.689 33.333 1.81 0.00 41.92 3.67
2256 2562 9.530633 CTAAAGTTAGTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 0.00 3.55
2257 2563 8.788325 AAAGTTAGTACAAAGTTGAGACACTT 57.212 30.769 0.00 0.98 38.74 3.16
2258 2564 9.880157 AAAGTTAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
2264 2570 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
2265 2571 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
2266 2572 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
2267 2573 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2268 2574 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2269 2575 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2270 2576 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2271 2577 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2272 2578 3.581332 AGACACTTATTTTGGGACGGAGA 59.419 43.478 0.00 0.00 0.00 3.71
2273 2579 3.933332 GACACTTATTTTGGGACGGAGAG 59.067 47.826 0.00 0.00 0.00 3.20
2274 2580 3.581332 ACACTTATTTTGGGACGGAGAGA 59.419 43.478 0.00 0.00 0.00 3.10
2275 2581 4.041198 ACACTTATTTTGGGACGGAGAGAA 59.959 41.667 0.00 0.00 0.00 2.87
2276 2582 5.186198 CACTTATTTTGGGACGGAGAGAAT 58.814 41.667 0.00 0.00 0.00 2.40
2277 2583 6.070424 ACACTTATTTTGGGACGGAGAGAATA 60.070 38.462 0.00 0.00 0.00 1.75
2278 2584 6.992715 CACTTATTTTGGGACGGAGAGAATAT 59.007 38.462 0.00 0.00 0.00 1.28
2279 2585 8.148351 CACTTATTTTGGGACGGAGAGAATATA 58.852 37.037 0.00 0.00 0.00 0.86
2280 2586 8.711170 ACTTATTTTGGGACGGAGAGAATATAA 58.289 33.333 0.00 0.00 0.00 0.98
2281 2587 9.209175 CTTATTTTGGGACGGAGAGAATATAAG 57.791 37.037 0.00 0.00 0.00 1.73
2282 2588 6.555463 TTTTGGGACGGAGAGAATATAAGT 57.445 37.500 0.00 0.00 0.00 2.24
2283 2589 5.786264 TTGGGACGGAGAGAATATAAGTC 57.214 43.478 0.00 0.00 0.00 3.01
2284 2590 5.063017 TGGGACGGAGAGAATATAAGTCT 57.937 43.478 0.00 0.00 0.00 3.24
2285 2591 5.455872 TGGGACGGAGAGAATATAAGTCTT 58.544 41.667 0.00 0.00 0.00 3.01
2286 2592 5.897824 TGGGACGGAGAGAATATAAGTCTTT 59.102 40.000 0.00 0.00 0.00 2.52
2287 2593 6.383147 TGGGACGGAGAGAATATAAGTCTTTT 59.617 38.462 0.00 0.00 0.00 2.27
2288 2594 7.093024 TGGGACGGAGAGAATATAAGTCTTTTT 60.093 37.037 0.00 0.00 0.00 1.94
2289 2595 8.419442 GGGACGGAGAGAATATAAGTCTTTTTA 58.581 37.037 0.00 0.00 0.00 1.52
2290 2596 9.465985 GGACGGAGAGAATATAAGTCTTTTTAG 57.534 37.037 0.00 0.00 0.00 1.85
2305 2611 8.897872 AGTCTTTTTAGAAATTTCACTACGGA 57.102 30.769 19.99 8.45 0.00 4.69
2306 2612 8.771766 AGTCTTTTTAGAAATTTCACTACGGAC 58.228 33.333 19.99 17.70 0.00 4.79
2307 2613 8.771766 GTCTTTTTAGAAATTTCACTACGGACT 58.228 33.333 19.99 0.00 0.00 3.85
2308 2614 9.985730 TCTTTTTAGAAATTTCACTACGGACTA 57.014 29.630 19.99 0.00 0.00 2.59
2310 2616 9.545105 TTTTTAGAAATTTCACTACGGACTACA 57.455 29.630 19.99 0.00 0.00 2.74
2311 2617 9.715121 TTTTAGAAATTTCACTACGGACTACAT 57.285 29.630 19.99 0.00 0.00 2.29
2313 2619 9.793252 TTAGAAATTTCACTACGGACTACATAC 57.207 33.333 19.99 0.00 0.00 2.39
2314 2620 6.971184 AGAAATTTCACTACGGACTACATACG 59.029 38.462 19.99 0.00 0.00 3.06
2315 2621 4.621068 TTTCACTACGGACTACATACGG 57.379 45.455 0.00 0.00 0.00 4.02
2316 2622 3.541996 TCACTACGGACTACATACGGA 57.458 47.619 0.00 0.00 0.00 4.69
2317 2623 3.461061 TCACTACGGACTACATACGGAG 58.539 50.000 0.00 0.00 43.89 4.63
2318 2624 2.032204 CACTACGGACTACATACGGAGC 60.032 54.545 0.00 0.00 42.12 4.70
2319 2625 2.216046 CTACGGACTACATACGGAGCA 58.784 52.381 0.00 0.00 31.15 4.26
2320 2626 1.466856 ACGGACTACATACGGAGCAA 58.533 50.000 0.00 0.00 0.00 3.91
2321 2627 1.820519 ACGGACTACATACGGAGCAAA 59.179 47.619 0.00 0.00 0.00 3.68
2322 2628 2.231964 ACGGACTACATACGGAGCAAAA 59.768 45.455 0.00 0.00 0.00 2.44
2323 2629 3.118884 ACGGACTACATACGGAGCAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
2324 2630 3.245284 CGGACTACATACGGAGCAAAATG 59.755 47.826 0.00 0.00 0.00 2.32
2325 2631 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
2326 2632 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
2327 2633 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2328 2634 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2329 2635 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2330 2636 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2331 2637 4.154195 ACATACGGAGCAAAATGAGTGAAC 59.846 41.667 0.00 0.00 0.00 3.18
2332 2638 1.880027 ACGGAGCAAAATGAGTGAACC 59.120 47.619 0.00 0.00 0.00 3.62
2333 2639 2.154462 CGGAGCAAAATGAGTGAACCT 58.846 47.619 0.00 0.00 0.00 3.50
2334 2640 3.244422 ACGGAGCAAAATGAGTGAACCTA 60.244 43.478 0.00 0.00 0.00 3.08
2335 2641 3.125316 CGGAGCAAAATGAGTGAACCTAC 59.875 47.826 0.00 0.00 0.00 3.18
2336 2642 4.072131 GGAGCAAAATGAGTGAACCTACA 58.928 43.478 0.00 0.00 0.00 2.74
2337 2643 4.083271 GGAGCAAAATGAGTGAACCTACAC 60.083 45.833 0.00 0.00 40.60 2.90
2489 2800 0.315886 TGAGCCGCGACTAAGTGAAA 59.684 50.000 8.23 0.00 0.00 2.69
2589 2901 3.173247 CGAGTACTTCGTGTGCACA 57.827 52.632 17.42 17.42 44.27 4.57
2803 3115 4.479993 GCCTCCCTGCAGCGTCAT 62.480 66.667 8.66 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.365497 AGAACATTCACCCAAGAAGATTTTT 57.635 32.000 0.00 0.00 0.00 1.94
35 36 5.634118 TCAAGAACATTCACCCAAGAAGAT 58.366 37.500 0.00 0.00 0.00 2.40
40 41 2.095567 CGCTCAAGAACATTCACCCAAG 60.096 50.000 0.00 0.00 0.00 3.61
44 45 1.197721 CCACGCTCAAGAACATTCACC 59.802 52.381 0.00 0.00 0.00 4.02
47 48 4.425577 AAATCCACGCTCAAGAACATTC 57.574 40.909 0.00 0.00 0.00 2.67
50 51 3.243367 CCAAAAATCCACGCTCAAGAACA 60.243 43.478 0.00 0.00 0.00 3.18
53 54 1.885887 CCCAAAAATCCACGCTCAAGA 59.114 47.619 0.00 0.00 0.00 3.02
65 67 3.317993 CACAAGAGACCGTTCCCAAAAAT 59.682 43.478 0.00 0.00 0.00 1.82
72 74 1.865340 GAACACACAAGAGACCGTTCC 59.135 52.381 0.00 0.00 0.00 3.62
74 76 1.135527 TCGAACACACAAGAGACCGTT 59.864 47.619 0.00 0.00 0.00 4.44
75 77 0.742505 TCGAACACACAAGAGACCGT 59.257 50.000 0.00 0.00 0.00 4.83
76 78 1.986378 GATCGAACACACAAGAGACCG 59.014 52.381 0.00 0.00 0.00 4.79
77 79 2.338500 GGATCGAACACACAAGAGACC 58.662 52.381 0.00 0.00 0.00 3.85
78 80 2.338500 GGGATCGAACACACAAGAGAC 58.662 52.381 0.00 0.00 0.00 3.36
83 87 0.669318 GAGCGGGATCGAACACACAA 60.669 55.000 0.00 0.00 39.00 3.33
84 88 1.080093 GAGCGGGATCGAACACACA 60.080 57.895 0.00 0.00 39.00 3.72
87 91 2.202892 GGGAGCGGGATCGAACAC 60.203 66.667 0.00 0.00 39.00 3.32
98 102 7.748333 CTTATTGCTTTAAGATGCGGGAGCG 62.748 48.000 0.00 0.00 44.10 5.03
102 106 4.498009 CCACTTATTGCTTTAAGATGCGGG 60.498 45.833 11.60 3.78 34.08 6.13
103 107 4.096382 ACCACTTATTGCTTTAAGATGCGG 59.904 41.667 11.60 8.88 34.08 5.69
106 110 5.105797 TGCCACCACTTATTGCTTTAAGATG 60.106 40.000 11.60 7.21 34.08 2.90
116 120 2.830923 TGGGAATTGCCACCACTTATTG 59.169 45.455 15.64 0.00 38.95 1.90
117 121 3.182887 TGGGAATTGCCACCACTTATT 57.817 42.857 15.64 0.00 38.95 1.40
120 124 1.269012 CATGGGAATTGCCACCACTT 58.731 50.000 22.15 1.45 37.05 3.16
122 126 1.616091 CCCATGGGAATTGCCACCAC 61.616 60.000 28.27 0.00 37.05 4.16
123 127 1.305971 CCCATGGGAATTGCCACCA 60.306 57.895 28.27 5.53 38.95 4.17
124 128 2.734720 GCCCATGGGAATTGCCACC 61.735 63.158 36.00 9.37 38.95 4.61
136 140 4.101790 GCGAACGGTGTGCCCATG 62.102 66.667 0.00 0.00 0.00 3.66
141 145 4.980805 TGGGAGCGAACGGTGTGC 62.981 66.667 3.17 0.00 0.00 4.57
169 173 3.417069 AATGATTGTGTCGTTCCCTGA 57.583 42.857 0.00 0.00 30.08 3.86
170 174 3.119849 GGAAATGATTGTGTCGTTCCCTG 60.120 47.826 0.00 0.00 37.53 4.45
175 179 3.081804 GGGAGGAAATGATTGTGTCGTT 58.918 45.455 0.00 0.00 37.67 3.85
176 180 2.039746 TGGGAGGAAATGATTGTGTCGT 59.960 45.455 0.00 0.00 0.00 4.34
177 181 2.710377 TGGGAGGAAATGATTGTGTCG 58.290 47.619 0.00 0.00 0.00 4.35
185 189 4.478317 AGGATGTTGTATGGGAGGAAATGA 59.522 41.667 0.00 0.00 0.00 2.57
188 192 3.849574 TCAGGATGTTGTATGGGAGGAAA 59.150 43.478 0.00 0.00 37.40 3.13
190 194 3.041211 CTCAGGATGTTGTATGGGAGGA 58.959 50.000 0.00 0.00 37.40 3.71
230 234 0.181114 TCATAGGGGAGTGTGCATGC 59.819 55.000 11.82 11.82 0.00 4.06
235 239 2.700371 TGCTACATCATAGGGGAGTGTG 59.300 50.000 0.00 0.00 0.00 3.82
236 240 3.046283 TGCTACATCATAGGGGAGTGT 57.954 47.619 0.00 0.00 0.00 3.55
237 241 3.580022 TCATGCTACATCATAGGGGAGTG 59.420 47.826 0.00 0.00 0.00 3.51
241 245 4.564782 ATGTCATGCTACATCATAGGGG 57.435 45.455 0.00 0.00 35.08 4.79
251 255 6.182039 TGCTTTCAGTAAATGTCATGCTAC 57.818 37.500 0.00 0.00 0.00 3.58
262 266 5.945784 AGTTGCCATCTATGCTTTCAGTAAA 59.054 36.000 0.00 0.00 0.00 2.01
263 267 5.500234 AGTTGCCATCTATGCTTTCAGTAA 58.500 37.500 0.00 0.00 0.00 2.24
268 272 4.637534 TGAGAAGTTGCCATCTATGCTTTC 59.362 41.667 0.00 0.00 0.00 2.62
276 280 1.980765 TGTCCTGAGAAGTTGCCATCT 59.019 47.619 0.00 0.00 0.00 2.90
277 281 2.479566 TGTCCTGAGAAGTTGCCATC 57.520 50.000 0.00 0.00 0.00 3.51
293 297 5.709907 CATGTTGCAGCATGACGAATTGTC 61.710 45.833 32.70 0.00 46.65 3.18
294 298 1.608109 TGTTGCAGCATGACGAATTGT 59.392 42.857 0.00 0.00 39.69 2.71
302 314 0.899019 ATTGCCATGTTGCAGCATGA 59.101 45.000 36.27 21.75 46.65 3.07
307 319 1.546923 TCAGGAATTGCCATGTTGCAG 59.453 47.619 0.00 0.00 43.21 4.41
346 358 3.425162 AAAGTGGTGGGCTAAGAGAAG 57.575 47.619 0.00 0.00 0.00 2.85
366 378 7.360861 CGGAATTTGTCATGCTGTAGTAGAAAA 60.361 37.037 0.00 0.00 0.00 2.29
379 391 4.235939 TGTGTTTCCGGAATTTGTCATG 57.764 40.909 19.62 0.00 0.00 3.07
383 395 6.582677 TTATCATGTGTTTCCGGAATTTGT 57.417 33.333 19.62 0.56 0.00 2.83
393 405 7.807907 ACAACCGAGAAAATTATCATGTGTTTC 59.192 33.333 0.00 0.00 0.00 2.78
404 416 7.731882 TGTCATACAACAACCGAGAAAATTA 57.268 32.000 0.00 0.00 0.00 1.40
413 425 9.485591 GTAGAATAATTTGTCATACAACAACCG 57.514 33.333 0.00 0.00 37.90 4.44
432 444 9.964354 AAATCAATGCCATGCTATAGTAGAATA 57.036 29.630 0.84 0.00 0.00 1.75
433 445 8.874744 AAATCAATGCCATGCTATAGTAGAAT 57.125 30.769 0.84 0.00 0.00 2.40
465 674 9.793252 ACAATATTACAGAGAAATTTGTCATGC 57.207 29.630 16.80 0.00 0.00 4.06
492 705 8.152898 TGTCATGCTATAACAGAGCTATTTGAT 58.847 33.333 0.00 0.00 40.76 2.57
493 706 7.500141 TGTCATGCTATAACAGAGCTATTTGA 58.500 34.615 0.00 0.00 40.76 2.69
494 707 7.719778 TGTCATGCTATAACAGAGCTATTTG 57.280 36.000 0.00 0.00 40.76 2.32
500 713 6.857777 AGAATTGTCATGCTATAACAGAGC 57.142 37.500 0.00 0.00 40.53 4.09
537 752 6.930722 GGAACATTTCTGGAATTGTCATGTTT 59.069 34.615 10.08 0.00 34.35 2.83
539 754 5.047092 GGGAACATTTCTGGAATTGTCATGT 60.047 40.000 10.08 2.75 34.84 3.21
540 755 5.186409 AGGGAACATTTCTGGAATTGTCATG 59.814 40.000 10.08 0.00 34.84 3.07
542 757 4.523943 CAGGGAACATTTCTGGAATTGTCA 59.476 41.667 10.08 0.00 34.84 3.58
543 758 4.766891 TCAGGGAACATTTCTGGAATTGTC 59.233 41.667 10.08 5.76 34.84 3.18
544 759 4.739793 TCAGGGAACATTTCTGGAATTGT 58.260 39.130 5.40 5.40 36.72 2.71
545 760 5.012239 TCTCAGGGAACATTTCTGGAATTG 58.988 41.667 4.36 4.36 0.00 2.32
575 790 4.438148 GTCATGAGAGAGCTTTCCCTAAC 58.562 47.826 0.00 0.00 0.00 2.34
577 792 2.690497 CGTCATGAGAGAGCTTTCCCTA 59.310 50.000 0.00 0.00 0.00 3.53
592 808 1.835121 TTCGAGATAACGGCGTCATG 58.165 50.000 15.17 0.30 0.00 3.07
593 809 2.034179 TCATTCGAGATAACGGCGTCAT 59.966 45.455 15.17 3.14 0.00 3.06
598 814 1.140816 GGCTCATTCGAGATAACGGC 58.859 55.000 0.00 0.00 42.34 5.68
605 821 0.106868 TCCGGTAGGCTCATTCGAGA 60.107 55.000 0.00 0.00 41.36 4.04
612 828 0.245539 CGTTCTTTCCGGTAGGCTCA 59.754 55.000 0.00 0.00 37.47 4.26
613 829 0.529378 TCGTTCTTTCCGGTAGGCTC 59.471 55.000 0.00 0.00 37.47 4.70
616 832 1.133790 ACGATCGTTCTTTCCGGTAGG 59.866 52.381 16.60 0.00 39.46 3.18
619 835 3.900446 AACGATCGTTCTTTCCGGT 57.100 47.368 27.11 2.27 32.09 5.28
647 863 2.928396 CGTGTCCTCCCTGGGGTT 60.928 66.667 14.00 0.00 36.20 4.11
731 947 7.441458 AGTGTACTAGACATTGACCAAGTTTTC 59.559 37.037 0.00 0.00 41.14 2.29
785 1005 5.337554 GGTTTATAATGCTTCGGGTTCAAC 58.662 41.667 0.00 0.00 0.00 3.18
794 1014 6.372937 GCTAGATGGAGGGTTTATAATGCTTC 59.627 42.308 0.00 0.00 0.00 3.86
798 1018 7.036220 CGTAGCTAGATGGAGGGTTTATAATG 58.964 42.308 0.00 0.00 0.00 1.90
893 1115 3.798954 CTTCGGCTGAGCGGGGATC 62.799 68.421 12.17 0.00 0.00 3.36
908 1132 0.170339 CGGCGGATGGGTTTTTCTTC 59.830 55.000 0.00 0.00 0.00 2.87
972 1202 4.492955 CTCTGGTGAAGAGCGAGC 57.507 61.111 0.00 0.00 45.93 5.03
1153 1433 3.083600 GACATGGCAGTGCGCGTAC 62.084 63.158 20.26 20.26 43.84 3.67
1467 1759 0.892063 AGACCTTCTCCAGAACGCTC 59.108 55.000 0.00 0.00 0.00 5.03
1881 2182 3.876589 CTGCTAACACACGGGCGGT 62.877 63.158 0.00 0.00 0.00 5.68
1919 2220 5.518865 AGCACATGAAAATTACTACCCCAT 58.481 37.500 0.00 0.00 0.00 4.00
1930 2231 6.455360 AAATACCGATGAGCACATGAAAAT 57.545 33.333 0.00 0.00 36.82 1.82
1969 2273 0.542805 GGTGTGCTCCCCGGTATTTA 59.457 55.000 0.00 0.00 0.00 1.40
1997 2301 5.888901 TCTCGTACCCTGTATAGATTGGAT 58.111 41.667 0.00 0.00 0.00 3.41
1998 2302 5.314718 TCTCGTACCCTGTATAGATTGGA 57.685 43.478 0.00 0.00 0.00 3.53
2025 2331 1.735920 GACCACAGCAGCACTCTCG 60.736 63.158 0.00 0.00 0.00 4.04
2028 2334 1.849976 GCAAGACCACAGCAGCACTC 61.850 60.000 0.00 0.00 0.00 3.51
2029 2335 1.895707 GCAAGACCACAGCAGCACT 60.896 57.895 0.00 0.00 0.00 4.40
2030 2336 1.895707 AGCAAGACCACAGCAGCAC 60.896 57.895 0.00 0.00 0.00 4.40
2031 2337 1.895231 CAGCAAGACCACAGCAGCA 60.895 57.895 0.00 0.00 0.00 4.41
2032 2338 1.450531 AACAGCAAGACCACAGCAGC 61.451 55.000 0.00 0.00 0.00 5.25
2033 2339 0.590195 GAACAGCAAGACCACAGCAG 59.410 55.000 0.00 0.00 0.00 4.24
2034 2340 0.181114 AGAACAGCAAGACCACAGCA 59.819 50.000 0.00 0.00 0.00 4.41
2035 2341 1.265365 GAAGAACAGCAAGACCACAGC 59.735 52.381 0.00 0.00 0.00 4.40
2036 2342 2.805099 GAGAAGAACAGCAAGACCACAG 59.195 50.000 0.00 0.00 0.00 3.66
2037 2343 2.485479 GGAGAAGAACAGCAAGACCACA 60.485 50.000 0.00 0.00 0.00 4.17
2038 2344 2.147150 GGAGAAGAACAGCAAGACCAC 58.853 52.381 0.00 0.00 0.00 4.16
2039 2345 2.050144 AGGAGAAGAACAGCAAGACCA 58.950 47.619 0.00 0.00 0.00 4.02
2040 2346 2.810852 CAAGGAGAAGAACAGCAAGACC 59.189 50.000 0.00 0.00 0.00 3.85
2041 2347 3.733337 TCAAGGAGAAGAACAGCAAGAC 58.267 45.455 0.00 0.00 0.00 3.01
2042 2348 4.422073 TTCAAGGAGAAGAACAGCAAGA 57.578 40.909 0.00 0.00 0.00 3.02
2053 2359 3.502211 GCGGACAAATTCTTCAAGGAGAA 59.498 43.478 0.00 0.00 39.76 2.87
2054 2360 3.074412 GCGGACAAATTCTTCAAGGAGA 58.926 45.455 0.00 0.00 0.00 3.71
2055 2361 2.159653 CGCGGACAAATTCTTCAAGGAG 60.160 50.000 0.00 0.00 0.00 3.69
2056 2362 1.804151 CGCGGACAAATTCTTCAAGGA 59.196 47.619 0.00 0.00 0.00 3.36
2057 2363 1.535462 ACGCGGACAAATTCTTCAAGG 59.465 47.619 12.47 0.00 0.00 3.61
2058 2364 2.969443 ACGCGGACAAATTCTTCAAG 57.031 45.000 12.47 0.00 0.00 3.02
2059 2365 4.434989 CGATTACGCGGACAAATTCTTCAA 60.435 41.667 12.47 0.00 0.00 2.69
2060 2366 3.061563 CGATTACGCGGACAAATTCTTCA 59.938 43.478 12.47 0.00 0.00 3.02
2061 2367 3.061697 ACGATTACGCGGACAAATTCTTC 59.938 43.478 12.47 0.00 43.96 2.87
2062 2368 2.997986 ACGATTACGCGGACAAATTCTT 59.002 40.909 12.47 0.00 43.96 2.52
2063 2369 2.613691 ACGATTACGCGGACAAATTCT 58.386 42.857 12.47 0.00 43.96 2.40
2064 2370 4.503767 TTACGATTACGCGGACAAATTC 57.496 40.909 12.47 0.00 43.96 2.17
2065 2371 4.025480 GGATTACGATTACGCGGACAAATT 60.025 41.667 12.47 0.00 43.96 1.82
2066 2372 3.492011 GGATTACGATTACGCGGACAAAT 59.508 43.478 12.47 4.39 43.96 2.32
2067 2373 2.859538 GGATTACGATTACGCGGACAAA 59.140 45.455 12.47 0.00 43.96 2.83
2068 2374 2.462889 GGATTACGATTACGCGGACAA 58.537 47.619 12.47 1.09 43.96 3.18
2069 2375 1.269206 GGGATTACGATTACGCGGACA 60.269 52.381 12.47 0.00 43.96 4.02
2070 2376 1.269206 TGGGATTACGATTACGCGGAC 60.269 52.381 12.47 0.00 43.96 4.79
2071 2377 1.001048 CTGGGATTACGATTACGCGGA 60.001 52.381 12.47 0.00 43.96 5.54
2072 2378 1.269413 ACTGGGATTACGATTACGCGG 60.269 52.381 12.47 0.00 43.96 6.46
2073 2379 2.129823 ACTGGGATTACGATTACGCG 57.870 50.000 3.53 3.53 43.96 6.01
2074 2380 4.443394 CAGTTACTGGGATTACGATTACGC 59.557 45.833 4.14 0.00 43.96 4.42
2075 2381 5.824429 TCAGTTACTGGGATTACGATTACG 58.176 41.667 12.79 0.00 37.53 3.18
2076 2382 7.035840 TCTCAGTTACTGGGATTACGATTAC 57.964 40.000 11.36 0.00 35.88 1.89
2086 2392 1.204704 CGTGCATCTCAGTTACTGGGA 59.795 52.381 17.91 17.91 45.65 4.37
2087 2393 1.066858 ACGTGCATCTCAGTTACTGGG 60.067 52.381 12.79 9.50 32.35 4.45
2088 2394 1.995484 CACGTGCATCTCAGTTACTGG 59.005 52.381 12.79 3.67 31.51 4.00
2089 2395 1.391485 GCACGTGCATCTCAGTTACTG 59.609 52.381 34.52 5.94 41.59 2.74
2090 2396 1.273606 AGCACGTGCATCTCAGTTACT 59.726 47.619 39.21 13.86 45.16 2.24
2091 2397 1.714794 AGCACGTGCATCTCAGTTAC 58.285 50.000 39.21 8.27 45.16 2.50
2092 2398 2.455674 AAGCACGTGCATCTCAGTTA 57.544 45.000 39.21 0.00 45.16 2.24
2093 2399 1.532868 GAAAGCACGTGCATCTCAGTT 59.467 47.619 39.21 21.63 45.16 3.16
2094 2400 1.151668 GAAAGCACGTGCATCTCAGT 58.848 50.000 39.21 16.76 45.16 3.41
2095 2401 1.128136 CAGAAAGCACGTGCATCTCAG 59.872 52.381 39.21 24.98 45.16 3.35
2096 2402 1.150827 CAGAAAGCACGTGCATCTCA 58.849 50.000 39.21 0.00 45.16 3.27
2097 2403 1.432514 TCAGAAAGCACGTGCATCTC 58.567 50.000 39.21 29.53 45.16 2.75
2098 2404 2.105006 ATCAGAAAGCACGTGCATCT 57.895 45.000 39.21 34.70 45.16 2.90
2099 2405 2.907910 AATCAGAAAGCACGTGCATC 57.092 45.000 39.21 33.27 45.16 3.91
2100 2406 3.004629 TGAAAATCAGAAAGCACGTGCAT 59.995 39.130 39.21 27.93 45.16 3.96
2101 2407 2.357323 TGAAAATCAGAAAGCACGTGCA 59.643 40.909 39.21 20.36 45.16 4.57
2102 2408 2.998772 TGAAAATCAGAAAGCACGTGC 58.001 42.857 32.79 32.79 42.49 5.34
2113 2419 4.696899 TTGATGCAGCTCTGAAAATCAG 57.303 40.909 2.53 0.88 45.59 2.90
2114 2420 4.703093 TGATTGATGCAGCTCTGAAAATCA 59.297 37.500 2.53 6.28 0.00 2.57
2115 2421 5.244785 TGATTGATGCAGCTCTGAAAATC 57.755 39.130 2.53 3.51 0.00 2.17
2116 2422 5.359860 TCATGATTGATGCAGCTCTGAAAAT 59.640 36.000 2.53 0.00 31.32 1.82
2117 2423 4.703093 TCATGATTGATGCAGCTCTGAAAA 59.297 37.500 2.53 0.00 31.32 2.29
2118 2424 4.266714 TCATGATTGATGCAGCTCTGAAA 58.733 39.130 2.53 0.00 31.32 2.69
2119 2425 3.881220 TCATGATTGATGCAGCTCTGAA 58.119 40.909 2.53 0.00 31.32 3.02
2120 2426 3.553828 TCATGATTGATGCAGCTCTGA 57.446 42.857 2.53 0.00 31.32 3.27
2121 2427 7.611213 TTATATCATGATTGATGCAGCTCTG 57.389 36.000 14.65 0.00 42.60 3.35
2122 2428 8.809468 AATTATATCATGATTGATGCAGCTCT 57.191 30.769 14.65 0.00 42.60 4.09
2123 2429 9.856488 AAAATTATATCATGATTGATGCAGCTC 57.144 29.630 14.65 0.00 42.60 4.09
2146 2452 9.146984 CGGAGAGAGTATTTGTGTACAATAAAA 57.853 33.333 0.00 0.00 35.55 1.52
2147 2453 8.308931 ACGGAGAGAGTATTTGTGTACAATAAA 58.691 33.333 0.00 2.94 35.55 1.40
2148 2454 7.833786 ACGGAGAGAGTATTTGTGTACAATAA 58.166 34.615 0.00 0.00 35.55 1.40
2149 2455 7.400599 ACGGAGAGAGTATTTGTGTACAATA 57.599 36.000 0.00 0.00 35.55 1.90
2150 2456 6.282199 ACGGAGAGAGTATTTGTGTACAAT 57.718 37.500 0.00 0.00 35.55 2.71
2151 2457 5.717078 ACGGAGAGAGTATTTGTGTACAA 57.283 39.130 0.00 0.00 0.00 2.41
2152 2458 5.336213 GGAACGGAGAGAGTATTTGTGTACA 60.336 44.000 0.00 0.00 0.00 2.90
2153 2459 5.100943 GGAACGGAGAGAGTATTTGTGTAC 58.899 45.833 0.00 0.00 0.00 2.90
2154 2460 5.014858 AGGAACGGAGAGAGTATTTGTGTA 58.985 41.667 0.00 0.00 0.00 2.90
2155 2461 3.833070 AGGAACGGAGAGAGTATTTGTGT 59.167 43.478 0.00 0.00 0.00 3.72
2156 2462 4.457834 AGGAACGGAGAGAGTATTTGTG 57.542 45.455 0.00 0.00 0.00 3.33
2157 2463 6.600882 TTTAGGAACGGAGAGAGTATTTGT 57.399 37.500 0.00 0.00 0.00 2.83
2158 2464 8.414778 AGTATTTAGGAACGGAGAGAGTATTTG 58.585 37.037 0.00 0.00 0.00 2.32
2159 2465 8.536340 AGTATTTAGGAACGGAGAGAGTATTT 57.464 34.615 0.00 0.00 0.00 1.40
2160 2466 7.231115 GGAGTATTTAGGAACGGAGAGAGTATT 59.769 40.741 0.00 0.00 0.00 1.89
2161 2467 6.716173 GGAGTATTTAGGAACGGAGAGAGTAT 59.284 42.308 0.00 0.00 0.00 2.12
2162 2468 6.060788 GGAGTATTTAGGAACGGAGAGAGTA 58.939 44.000 0.00 0.00 0.00 2.59
2163 2469 4.888823 GGAGTATTTAGGAACGGAGAGAGT 59.111 45.833 0.00 0.00 0.00 3.24
2164 2470 4.278919 GGGAGTATTTAGGAACGGAGAGAG 59.721 50.000 0.00 0.00 0.00 3.20
2165 2471 4.079327 AGGGAGTATTTAGGAACGGAGAGA 60.079 45.833 0.00 0.00 0.00 3.10
2166 2472 4.216708 AGGGAGTATTTAGGAACGGAGAG 58.783 47.826 0.00 0.00 0.00 3.20
2167 2473 4.213513 GAGGGAGTATTTAGGAACGGAGA 58.786 47.826 0.00 0.00 0.00 3.71
2168 2474 3.321396 GGAGGGAGTATTTAGGAACGGAG 59.679 52.174 0.00 0.00 0.00 4.63
2169 2475 3.303049 GGAGGGAGTATTTAGGAACGGA 58.697 50.000 0.00 0.00 0.00 4.69
2170 2476 2.035576 CGGAGGGAGTATTTAGGAACGG 59.964 54.545 0.00 0.00 0.00 4.44
2171 2477 2.692041 ACGGAGGGAGTATTTAGGAACG 59.308 50.000 0.00 0.00 0.00 3.95
2172 2478 3.069300 GGACGGAGGGAGTATTTAGGAAC 59.931 52.174 0.00 0.00 0.00 3.62
2173 2479 3.303049 GGACGGAGGGAGTATTTAGGAA 58.697 50.000 0.00 0.00 0.00 3.36
2174 2480 2.425392 GGGACGGAGGGAGTATTTAGGA 60.425 54.545 0.00 0.00 0.00 2.94
2175 2481 1.969208 GGGACGGAGGGAGTATTTAGG 59.031 57.143 0.00 0.00 0.00 2.69
2176 2482 2.674420 TGGGACGGAGGGAGTATTTAG 58.326 52.381 0.00 0.00 0.00 1.85
2177 2483 2.852714 TGGGACGGAGGGAGTATTTA 57.147 50.000 0.00 0.00 0.00 1.40
2178 2484 1.961133 TTGGGACGGAGGGAGTATTT 58.039 50.000 0.00 0.00 0.00 1.40
2179 2485 1.961133 TTTGGGACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
2180 2486 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
2181 2487 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2182 2488 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2183 2489 2.919228 CTTATTTTGGGACGGAGGGAG 58.081 52.381 0.00 0.00 0.00 4.30
2184 2490 1.064979 GCTTATTTTGGGACGGAGGGA 60.065 52.381 0.00 0.00 0.00 4.20
2185 2491 1.389555 GCTTATTTTGGGACGGAGGG 58.610 55.000 0.00 0.00 0.00 4.30
2186 2492 1.014352 CGCTTATTTTGGGACGGAGG 58.986 55.000 0.00 0.00 0.00 4.30
2187 2493 1.664151 GACGCTTATTTTGGGACGGAG 59.336 52.381 0.00 0.00 0.00 4.63
2188 2494 1.276989 AGACGCTTATTTTGGGACGGA 59.723 47.619 0.00 0.00 0.00 4.69
2189 2495 1.734163 AGACGCTTATTTTGGGACGG 58.266 50.000 0.00 0.00 0.00 4.79
2190 2496 2.739913 TCAAGACGCTTATTTTGGGACG 59.260 45.455 0.00 0.00 0.00 4.79
2191 2497 3.119955 GGTCAAGACGCTTATTTTGGGAC 60.120 47.826 0.00 0.00 0.00 4.46
2192 2498 3.078837 GGTCAAGACGCTTATTTTGGGA 58.921 45.455 0.00 0.00 0.00 4.37
2193 2499 3.081804 AGGTCAAGACGCTTATTTTGGG 58.918 45.455 0.00 0.00 0.00 4.12
2194 2500 4.766404 AAGGTCAAGACGCTTATTTTGG 57.234 40.909 3.23 0.00 0.00 3.28
2195 2501 6.481954 ACTAAGGTCAAGACGCTTATTTTG 57.518 37.500 9.84 4.26 0.00 2.44
2196 2502 7.156673 TGTACTAAGGTCAAGACGCTTATTTT 58.843 34.615 9.84 3.97 0.00 1.82
2197 2503 6.694447 TGTACTAAGGTCAAGACGCTTATTT 58.306 36.000 9.84 5.53 0.00 1.40
2198 2504 6.276832 TGTACTAAGGTCAAGACGCTTATT 57.723 37.500 9.84 8.12 0.00 1.40
2199 2505 5.909621 TGTACTAAGGTCAAGACGCTTAT 57.090 39.130 9.84 5.76 0.00 1.73
2200 2506 5.710513 TTGTACTAAGGTCAAGACGCTTA 57.289 39.130 0.00 9.33 0.00 3.09
2201 2507 4.595762 TTGTACTAAGGTCAAGACGCTT 57.404 40.909 0.00 8.34 0.00 4.68
2202 2508 4.803098 ATTGTACTAAGGTCAAGACGCT 57.197 40.909 0.00 0.00 0.00 5.07
2203 2509 5.857822 AAATTGTACTAAGGTCAAGACGC 57.142 39.130 0.00 0.00 0.00 5.19
2229 2535 9.310716 GTGTCTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
2230 2536 9.530633 AGTGTCTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
2231 2537 9.880157 AAGTGTCTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
2232 2538 8.788325 AAGTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
2238 2544 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2239 2545 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2240 2546 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2241 2547 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2242 2548 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2243 2549 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2244 2550 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2245 2551 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2246 2552 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2247 2553 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2248 2554 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2249 2555 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2250 2556 3.581332 TCTCCGTCCCAAAATAAGTGTCT 59.419 43.478 0.00 0.00 0.00 3.41
2251 2557 3.933332 CTCTCCGTCCCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
2252 2558 3.581332 TCTCTCCGTCCCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
2253 2559 4.202245 TCTCTCCGTCCCAAAATAAGTG 57.798 45.455 0.00 0.00 0.00 3.16
2254 2560 4.903045 TTCTCTCCGTCCCAAAATAAGT 57.097 40.909 0.00 0.00 0.00 2.24
2255 2561 9.209175 CTTATATTCTCTCCGTCCCAAAATAAG 57.791 37.037 0.00 0.00 0.00 1.73
2256 2562 8.711170 ACTTATATTCTCTCCGTCCCAAAATAA 58.289 33.333 0.00 0.00 0.00 1.40
2257 2563 8.258850 ACTTATATTCTCTCCGTCCCAAAATA 57.741 34.615 0.00 0.00 0.00 1.40
2258 2564 7.071321 AGACTTATATTCTCTCCGTCCCAAAAT 59.929 37.037 0.00 0.00 0.00 1.82
2259 2565 6.383147 AGACTTATATTCTCTCCGTCCCAAAA 59.617 38.462 0.00 0.00 0.00 2.44
2260 2566 5.897824 AGACTTATATTCTCTCCGTCCCAAA 59.102 40.000 0.00 0.00 0.00 3.28
2261 2567 5.455872 AGACTTATATTCTCTCCGTCCCAA 58.544 41.667 0.00 0.00 0.00 4.12
2262 2568 5.063017 AGACTTATATTCTCTCCGTCCCA 57.937 43.478 0.00 0.00 0.00 4.37
2263 2569 6.408107 AAAGACTTATATTCTCTCCGTCCC 57.592 41.667 0.00 0.00 0.00 4.46
2264 2570 9.465985 CTAAAAAGACTTATATTCTCTCCGTCC 57.534 37.037 0.00 0.00 0.00 4.79
2279 2585 9.333724 TCCGTAGTGAAATTTCTAAAAAGACTT 57.666 29.630 18.64 1.31 0.00 3.01
2280 2586 8.771766 GTCCGTAGTGAAATTTCTAAAAAGACT 58.228 33.333 18.64 13.41 0.00 3.24
2281 2587 8.771766 AGTCCGTAGTGAAATTTCTAAAAAGAC 58.228 33.333 18.64 16.54 0.00 3.01
2282 2588 8.897872 AGTCCGTAGTGAAATTTCTAAAAAGA 57.102 30.769 18.64 6.99 0.00 2.52
2284 2590 9.545105 TGTAGTCCGTAGTGAAATTTCTAAAAA 57.455 29.630 18.64 0.00 0.00 1.94
2285 2591 9.715121 ATGTAGTCCGTAGTGAAATTTCTAAAA 57.285 29.630 18.64 0.00 0.00 1.52
2287 2593 9.793252 GTATGTAGTCCGTAGTGAAATTTCTAA 57.207 33.333 18.64 2.12 0.00 2.10
2288 2594 8.124823 CGTATGTAGTCCGTAGTGAAATTTCTA 58.875 37.037 18.64 1.63 0.00 2.10
2289 2595 6.971184 CGTATGTAGTCCGTAGTGAAATTTCT 59.029 38.462 18.64 2.61 0.00 2.52
2290 2596 6.197842 CCGTATGTAGTCCGTAGTGAAATTTC 59.802 42.308 11.41 11.41 0.00 2.17
2291 2597 6.038356 CCGTATGTAGTCCGTAGTGAAATTT 58.962 40.000 0.00 0.00 0.00 1.82
2292 2598 5.357878 TCCGTATGTAGTCCGTAGTGAAATT 59.642 40.000 0.00 0.00 0.00 1.82
2293 2599 4.883585 TCCGTATGTAGTCCGTAGTGAAAT 59.116 41.667 0.00 0.00 0.00 2.17
2294 2600 4.260985 TCCGTATGTAGTCCGTAGTGAAA 58.739 43.478 0.00 0.00 0.00 2.69
2295 2601 3.872696 TCCGTATGTAGTCCGTAGTGAA 58.127 45.455 0.00 0.00 0.00 3.18
2296 2602 3.461061 CTCCGTATGTAGTCCGTAGTGA 58.539 50.000 0.00 0.00 0.00 3.41
2297 2603 2.032204 GCTCCGTATGTAGTCCGTAGTG 60.032 54.545 0.00 0.00 0.00 2.74
2298 2604 2.216898 GCTCCGTATGTAGTCCGTAGT 58.783 52.381 0.00 0.00 0.00 2.73
2299 2605 2.216046 TGCTCCGTATGTAGTCCGTAG 58.784 52.381 0.00 0.00 0.00 3.51
2300 2606 2.330440 TGCTCCGTATGTAGTCCGTA 57.670 50.000 0.00 0.00 0.00 4.02
2301 2607 1.466856 TTGCTCCGTATGTAGTCCGT 58.533 50.000 0.00 0.00 0.00 4.69
2302 2608 2.572191 TTTGCTCCGTATGTAGTCCG 57.428 50.000 0.00 0.00 0.00 4.79
2303 2609 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2304 2610 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2305 2611 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2306 2612 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2307 2613 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2308 2614 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2309 2615 4.437390 GGTTCACTCATTTTGCTCCGTATG 60.437 45.833 0.00 0.00 0.00 2.39
2310 2616 3.689649 GGTTCACTCATTTTGCTCCGTAT 59.310 43.478 0.00 0.00 0.00 3.06
2311 2617 3.071479 GGTTCACTCATTTTGCTCCGTA 58.929 45.455 0.00 0.00 0.00 4.02
2312 2618 1.880027 GGTTCACTCATTTTGCTCCGT 59.120 47.619 0.00 0.00 0.00 4.69
2313 2619 2.154462 AGGTTCACTCATTTTGCTCCG 58.846 47.619 0.00 0.00 0.00 4.63
2314 2620 4.072131 TGTAGGTTCACTCATTTTGCTCC 58.928 43.478 0.00 0.00 0.00 4.70
2315 2621 4.757149 AGTGTAGGTTCACTCATTTTGCTC 59.243 41.667 0.00 0.00 44.07 4.26
2316 2622 4.718961 AGTGTAGGTTCACTCATTTTGCT 58.281 39.130 0.00 0.00 44.07 3.91
2325 2631 7.304497 ACTCATTTTAGAGTGTAGGTTCACT 57.696 36.000 0.00 0.00 46.58 3.41
2337 2643 9.070149 GCTTTCAGCAATTTACTCATTTTAGAG 57.930 33.333 0.00 0.00 41.89 2.43
2338 2644 8.028938 GGCTTTCAGCAATTTACTCATTTTAGA 58.971 33.333 0.00 0.00 44.75 2.10
2339 2645 7.814107 TGGCTTTCAGCAATTTACTCATTTTAG 59.186 33.333 0.00 0.00 44.75 1.85
2340 2646 7.598493 GTGGCTTTCAGCAATTTACTCATTTTA 59.402 33.333 0.00 0.00 44.75 1.52
2341 2647 6.424812 GTGGCTTTCAGCAATTTACTCATTTT 59.575 34.615 0.00 0.00 44.75 1.82
2342 2648 5.928264 GTGGCTTTCAGCAATTTACTCATTT 59.072 36.000 0.00 0.00 44.75 2.32
2343 2649 5.473039 GTGGCTTTCAGCAATTTACTCATT 58.527 37.500 0.00 0.00 44.75 2.57
2344 2650 4.082026 GGTGGCTTTCAGCAATTTACTCAT 60.082 41.667 0.00 0.00 44.75 2.90
2345 2651 3.255642 GGTGGCTTTCAGCAATTTACTCA 59.744 43.478 0.00 0.00 44.75 3.41
2489 2800 1.607467 GGGCCAGGCATGTCAGTTT 60.607 57.895 15.19 0.00 0.00 2.66
2637 2949 2.029964 GTCGGGGTGCAGACGAAA 59.970 61.111 8.63 0.00 38.46 3.46
2803 3115 1.449423 CAATCGATCCGCCACCACA 60.449 57.895 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.