Multiple sequence alignment - TraesCS5B01G236700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G236700 chr5B 100.000 2279 0 0 1 2279 417806967 417804689 0.000000e+00 4209
1 TraesCS5B01G236700 chr5B 87.368 190 20 3 1 186 491144654 491144843 4.930000e-52 215
2 TraesCS5B01G236700 chr5B 87.634 186 20 2 4 186 645890262 645890077 1.770000e-51 213
3 TraesCS5B01G236700 chr5D 91.886 1972 63 41 371 2279 353656812 353654875 0.000000e+00 2665
4 TraesCS5B01G236700 chr5D 93.850 439 22 2 246 684 353664606 353664173 0.000000e+00 656
5 TraesCS5B01G236700 chr5D 85.302 381 28 12 1 374 353657716 353657357 3.580000e-98 368
6 TraesCS5B01G236700 chr5D 87.368 190 17 4 4 188 269163445 269163258 6.380000e-51 211
7 TraesCS5B01G236700 chr5A 90.323 1922 92 35 399 2271 454706227 454704351 0.000000e+00 2433
8 TraesCS5B01G236700 chr5A 86.702 188 10 4 187 374 454710633 454710461 6.420000e-46 195
9 TraesCS5B01G236700 chr6B 80.268 821 146 13 953 1762 614312865 614312050 2.500000e-169 604
10 TraesCS5B01G236700 chr6B 80.024 821 148 13 953 1762 614438175 614437360 5.420000e-166 593
11 TraesCS5B01G236700 chr6B 80.024 821 148 13 953 1762 614583233 614582418 5.420000e-166 593
12 TraesCS5B01G236700 chr6B 79.976 824 143 17 953 1762 636584770 636585585 2.520000e-164 588
13 TraesCS5B01G236700 chr6A 79.928 832 149 15 943 1762 554825749 554824924 1.510000e-166 595
14 TraesCS5B01G236700 chr6A 79.808 832 150 13 943 1762 564975976 564975151 7.010000e-165 590
15 TraesCS5B01G236700 chr6D 79.157 830 159 10 943 1762 422191867 422191042 1.530000e-156 562
16 TraesCS5B01G236700 chr2B 86.935 199 22 3 1 195 20563887 20564085 1.060000e-53 220
17 TraesCS5B01G236700 chr2A 87.895 190 19 3 1 186 33501036 33501225 1.060000e-53 220
18 TraesCS5B01G236700 chr3D 88.108 185 18 3 4 184 536372362 536372178 1.370000e-52 217
19 TraesCS5B01G236700 chr7D 87.234 188 21 2 4 188 248468384 248468197 6.380000e-51 211
20 TraesCS5B01G236700 chr7D 87.234 188 21 2 4 188 638071411 638071224 6.380000e-51 211
21 TraesCS5B01G236700 chr2D 86.911 191 21 3 1 187 553549832 553550022 6.380000e-51 211


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G236700 chr5B 417804689 417806967 2278 True 4209.0 4209 100.000 1 2279 1 chr5B.!!$R1 2278
1 TraesCS5B01G236700 chr5D 353654875 353657716 2841 True 1516.5 2665 88.594 1 2279 2 chr5D.!!$R3 2278
2 TraesCS5B01G236700 chr5A 454704351 454706227 1876 True 2433.0 2433 90.323 399 2271 1 chr5A.!!$R1 1872
3 TraesCS5B01G236700 chr6B 614312050 614312865 815 True 604.0 604 80.268 953 1762 1 chr6B.!!$R1 809
4 TraesCS5B01G236700 chr6B 614437360 614438175 815 True 593.0 593 80.024 953 1762 1 chr6B.!!$R2 809
5 TraesCS5B01G236700 chr6B 614582418 614583233 815 True 593.0 593 80.024 953 1762 1 chr6B.!!$R3 809
6 TraesCS5B01G236700 chr6B 636584770 636585585 815 False 588.0 588 79.976 953 1762 1 chr6B.!!$F1 809
7 TraesCS5B01G236700 chr6A 554824924 554825749 825 True 595.0 595 79.928 943 1762 1 chr6A.!!$R1 819
8 TraesCS5B01G236700 chr6A 564975151 564975976 825 True 590.0 590 79.808 943 1762 1 chr6A.!!$R2 819
9 TraesCS5B01G236700 chr6D 422191042 422191867 825 True 562.0 562 79.157 943 1762 1 chr6D.!!$R1 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.032515 TAATCCCCAGCTGACCGAGA 60.033 55.0 17.39 4.42 0.0 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 2349 0.318784 ACTCTGCGACGACTGTTTCC 60.319 55.0 0.0 0.0 0.0 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.908903 TGGTAACACTTCTGTCAATATTGTTTT 58.091 29.630 14.97 0.00 46.17 2.43
34 35 8.349245 CACTTCTGTCAATATTGTTTTGGTGTA 58.651 33.333 14.97 0.00 0.00 2.90
37 38 8.322906 TCTGTCAATATTGTTTTGGTGTAGAG 57.677 34.615 14.97 1.31 0.00 2.43
101 102 2.953648 TGGCTAATTGATAGTCGACCGA 59.046 45.455 13.01 0.16 39.19 4.69
150 151 8.463930 TTTTATTAATCACTAATCCCCAGCTG 57.536 34.615 6.78 6.78 32.28 4.24
151 152 5.912149 ATTAATCACTAATCCCCAGCTGA 57.088 39.130 17.39 0.00 0.00 4.26
152 153 3.567478 AATCACTAATCCCCAGCTGAC 57.433 47.619 17.39 0.00 0.00 3.51
153 154 1.204146 TCACTAATCCCCAGCTGACC 58.796 55.000 17.39 0.00 0.00 4.02
155 156 0.325296 ACTAATCCCCAGCTGACCGA 60.325 55.000 17.39 7.57 0.00 4.69
156 157 0.390860 CTAATCCCCAGCTGACCGAG 59.609 60.000 17.39 0.00 0.00 4.63
157 158 0.032515 TAATCCCCAGCTGACCGAGA 60.033 55.000 17.39 4.42 0.00 4.04
158 159 0.692419 AATCCCCAGCTGACCGAGAT 60.692 55.000 17.39 6.68 0.00 2.75
159 160 1.406065 ATCCCCAGCTGACCGAGATG 61.406 60.000 17.39 0.00 37.87 2.90
160 161 2.202987 CCCAGCTGACCGAGATGC 60.203 66.667 17.39 0.00 36.71 3.91
161 162 2.729479 CCCAGCTGACCGAGATGCT 61.729 63.158 17.39 0.00 36.71 3.79
162 163 1.395045 CCCAGCTGACCGAGATGCTA 61.395 60.000 17.39 0.00 36.71 3.49
163 164 0.461548 CCAGCTGACCGAGATGCTAA 59.538 55.000 17.39 0.00 36.71 3.09
164 165 1.565305 CAGCTGACCGAGATGCTAAC 58.435 55.000 8.42 0.00 29.56 2.34
165 166 0.101399 AGCTGACCGAGATGCTAACG 59.899 55.000 0.00 0.00 33.64 3.18
166 167 0.100682 GCTGACCGAGATGCTAACGA 59.899 55.000 0.00 0.00 0.00 3.85
167 168 1.269309 GCTGACCGAGATGCTAACGAT 60.269 52.381 0.00 0.00 0.00 3.73
168 169 2.389059 CTGACCGAGATGCTAACGATG 58.611 52.381 0.00 0.00 0.00 3.84
169 170 1.132588 GACCGAGATGCTAACGATGC 58.867 55.000 0.00 0.00 0.00 3.91
170 171 0.595053 ACCGAGATGCTAACGATGCG 60.595 55.000 0.00 0.00 0.00 4.73
171 172 0.317854 CCGAGATGCTAACGATGCGA 60.318 55.000 0.00 0.00 0.00 5.10
172 173 1.667177 CCGAGATGCTAACGATGCGAT 60.667 52.381 0.00 0.00 0.00 4.58
173 174 2.414161 CCGAGATGCTAACGATGCGATA 60.414 50.000 0.00 0.00 0.00 2.92
174 175 3.430008 CGAGATGCTAACGATGCGATAT 58.570 45.455 0.00 0.00 0.00 1.63
175 176 3.480308 CGAGATGCTAACGATGCGATATC 59.520 47.826 0.00 0.00 0.00 1.63
213 214 8.826293 AAAAATAATGCCCATGGATTTCAATT 57.174 26.923 15.22 6.09 0.00 2.32
214 215 8.826293 AAAATAATGCCCATGGATTTCAATTT 57.174 26.923 15.22 8.92 0.00 1.82
215 216 8.826293 AAATAATGCCCATGGATTTCAATTTT 57.174 26.923 15.22 0.76 0.00 1.82
216 217 8.826293 AATAATGCCCATGGATTTCAATTTTT 57.174 26.923 15.22 2.80 0.00 1.94
243 245 2.915079 CCATGCCCACGTATCCCA 59.085 61.111 0.00 0.00 0.00 4.37
294 296 4.020928 TCATTTGTACGAGGAAGTAAGCCA 60.021 41.667 0.00 0.00 0.00 4.75
298 300 2.457366 ACGAGGAAGTAAGCCAAGTG 57.543 50.000 0.00 0.00 0.00 3.16
301 303 0.038310 AGGAAGTAAGCCAAGTGCCC 59.962 55.000 0.00 0.00 42.71 5.36
316 318 0.938713 TGCCCGTGTTTTTACACTCG 59.061 50.000 6.83 0.00 38.40 4.18
334 336 0.719465 CGGTTTACATCGAGCCACAC 59.281 55.000 0.00 0.00 0.00 3.82
335 337 0.719465 GGTTTACATCGAGCCACACG 59.281 55.000 0.00 0.00 0.00 4.49
362 370 8.995220 GTGACATGTAATTTTCCTGTAGTGTTA 58.005 33.333 0.00 0.00 0.00 2.41
369 377 9.908152 GTAATTTTCCTGTAGTGTTAGCAATTT 57.092 29.630 0.00 0.00 0.00 1.82
390 946 9.743057 CAATTTTAAGTGAACACAGGATTAACA 57.257 29.630 7.68 0.00 0.00 2.41
417 973 6.620629 CGTACGAATATCAAACGCGTAAAATT 59.379 34.615 14.46 8.54 38.88 1.82
418 974 7.782505 CGTACGAATATCAAACGCGTAAAATTA 59.217 33.333 14.46 1.41 38.88 1.40
419 975 9.407514 GTACGAATATCAAACGCGTAAAATTAA 57.592 29.630 14.46 0.00 38.88 1.40
453 1009 2.048222 TCACGCTCCTTCCGCAAG 60.048 61.111 0.00 0.00 0.00 4.01
471 1027 1.376037 GGTTGGAAGGAGAGCGGTG 60.376 63.158 0.00 0.00 0.00 4.94
491 1047 4.552355 GTGGTGGTACAAACTTTATTGCC 58.448 43.478 0.00 0.00 44.16 4.52
568 1124 0.163146 GGTGCGAAGTTGCTAACGTC 59.837 55.000 0.00 0.00 36.68 4.34
569 1125 1.137513 GTGCGAAGTTGCTAACGTCT 58.862 50.000 11.02 0.00 37.68 4.18
570 1126 2.322161 GTGCGAAGTTGCTAACGTCTA 58.678 47.619 11.02 0.00 37.68 2.59
575 1131 4.341099 CGAAGTTGCTAACGTCTACTAGG 58.659 47.826 11.02 0.00 37.68 3.02
911 1467 0.248743 CATGCATGCGTGACCATTCC 60.249 55.000 31.95 0.00 35.09 3.01
919 1475 1.812571 GCGTGACCATTCCAGAAATGT 59.187 47.619 0.00 0.00 42.80 2.71
920 1476 3.006940 GCGTGACCATTCCAGAAATGTA 58.993 45.455 0.00 0.00 42.80 2.29
921 1477 3.181510 GCGTGACCATTCCAGAAATGTAC 60.182 47.826 0.00 0.00 42.80 2.90
1765 2330 1.152984 CCCGGCATGTATCCTGCAA 60.153 57.895 0.00 0.00 41.47 4.08
1766 2331 0.538057 CCCGGCATGTATCCTGCAAT 60.538 55.000 0.00 0.00 41.47 3.56
1767 2332 1.321474 CCGGCATGTATCCTGCAATT 58.679 50.000 0.00 0.00 41.47 2.32
1768 2333 1.001048 CCGGCATGTATCCTGCAATTG 60.001 52.381 0.00 0.00 41.47 2.32
1796 2361 1.070776 GCACGAAAGGAAACAGTCGTC 60.071 52.381 0.00 0.00 46.27 4.20
1807 2372 1.520494 ACAGTCGTCGCAGAGTTAGA 58.480 50.000 0.00 0.00 36.95 2.10
1809 2374 2.488545 ACAGTCGTCGCAGAGTTAGAAT 59.511 45.455 0.00 0.00 36.95 2.40
1848 2414 0.392461 AGCAACAACACACGTGACCT 60.392 50.000 25.01 2.03 0.00 3.85
1855 2421 3.570975 ACAACACACGTGACCTGTAGATA 59.429 43.478 25.01 0.00 0.00 1.98
1858 2432 4.582869 ACACACGTGACCTGTAGATAGTA 58.417 43.478 25.01 0.00 0.00 1.82
1885 2459 2.872038 GCCTTGAGATGAAACGGAGTGT 60.872 50.000 0.00 0.00 45.00 3.55
1894 2468 0.395312 AAACGGAGTGTGTAGGTGGG 59.605 55.000 0.00 0.00 45.00 4.61
1966 2540 0.322456 TGAGCATGTTGTACCAGCCC 60.322 55.000 0.00 0.00 0.00 5.19
2042 2634 3.814283 CCAGTTAGCCTACTAGGAGTACG 59.186 52.174 6.26 0.00 37.67 3.67
2057 2649 1.014352 GTACGGCACATCAATGGTCC 58.986 55.000 0.00 0.00 0.00 4.46
2058 2650 0.461163 TACGGCACATCAATGGTCCG 60.461 55.000 17.70 17.70 45.59 4.79
2059 2651 1.745115 CGGCACATCAATGGTCCGT 60.745 57.895 13.54 0.00 39.90 4.69
2060 2652 0.461163 CGGCACATCAATGGTCCGTA 60.461 55.000 13.54 0.00 39.90 4.02
2068 2686 0.373370 CAATGGTCCGTACGTGCATG 59.627 55.000 15.21 3.82 0.00 4.06
2070 2688 2.125673 GGTCCGTACGTGCATGCT 60.126 61.111 20.33 0.40 0.00 3.79
2071 2689 1.140161 GGTCCGTACGTGCATGCTA 59.860 57.895 20.33 2.15 0.00 3.49
2073 2691 0.179145 GTCCGTACGTGCATGCTAGT 60.179 55.000 20.33 19.70 0.00 2.57
2082 2700 2.487934 GTGCATGCTAGTATCACCTGG 58.512 52.381 20.33 0.00 0.00 4.45
2087 2705 4.769688 CATGCTAGTATCACCTGGAACAA 58.230 43.478 0.00 0.00 38.70 2.83
2109 2727 0.678950 TCTCCGTCTGTGCATTGACA 59.321 50.000 17.91 0.00 33.18 3.58
2183 2801 0.181350 CTCCCCATAACTCTGGTGCC 59.819 60.000 0.00 0.00 34.23 5.01
2205 2845 1.455786 GTGTGTGTAGCGCTAACACTG 59.544 52.381 35.33 0.00 45.95 3.66
2206 2846 0.438830 GTGTGTAGCGCTAACACTGC 59.561 55.000 32.46 25.29 45.95 4.40
2207 2847 0.032815 TGTGTAGCGCTAACACTGCA 59.967 50.000 31.39 19.65 45.95 4.41
2263 2907 6.830324 TGGATATAGAGCTTGCTTTTTGTGAT 59.170 34.615 0.00 0.00 0.00 3.06
2271 2915 3.082698 TGCTTTTTGTGATGCAGACAC 57.917 42.857 16.55 16.55 38.55 3.67
2272 2916 2.046313 GCTTTTTGTGATGCAGACACG 58.954 47.619 17.67 7.80 40.61 4.49
2273 2917 2.541588 GCTTTTTGTGATGCAGACACGT 60.542 45.455 17.67 0.00 40.61 4.49
2276 2920 0.602638 TTGTGATGCAGACACGTCCC 60.603 55.000 17.67 0.22 40.61 4.46
2278 2922 2.509336 GATGCAGACACGTCCCGG 60.509 66.667 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.999009 GGTTTCCAACACTAAAATAAGCTATAC 57.001 33.333 0.00 0.00 0.00 1.47
44 45 7.883391 TCACAGGTTTCCAACACTAAAATAA 57.117 32.000 0.00 0.00 0.00 1.40
85 86 7.813148 ATCGATTTTATCGGTCGACTATCAATT 59.187 33.333 16.46 4.44 43.84 2.32
136 137 0.325296 TCGGTCAGCTGGGGATTAGT 60.325 55.000 15.13 0.00 0.00 2.24
141 142 2.060383 CATCTCGGTCAGCTGGGGA 61.060 63.158 15.13 3.34 0.00 4.81
142 143 2.503061 CATCTCGGTCAGCTGGGG 59.497 66.667 15.13 3.48 0.00 4.96
143 144 1.395045 TAGCATCTCGGTCAGCTGGG 61.395 60.000 15.13 3.86 37.94 4.45
144 145 0.461548 TTAGCATCTCGGTCAGCTGG 59.538 55.000 15.13 0.00 37.94 4.85
145 146 1.565305 GTTAGCATCTCGGTCAGCTG 58.435 55.000 7.63 7.63 37.94 4.24
149 150 1.536072 GCATCGTTAGCATCTCGGTCA 60.536 52.381 0.00 0.00 0.00 4.02
150 151 1.132588 GCATCGTTAGCATCTCGGTC 58.867 55.000 0.00 0.00 0.00 4.79
151 152 0.595053 CGCATCGTTAGCATCTCGGT 60.595 55.000 0.00 0.00 0.00 4.69
152 153 0.317854 TCGCATCGTTAGCATCTCGG 60.318 55.000 0.00 0.00 0.00 4.63
153 154 1.691127 ATCGCATCGTTAGCATCTCG 58.309 50.000 0.00 0.00 0.00 4.04
155 156 3.445450 AGGATATCGCATCGTTAGCATCT 59.555 43.478 0.00 0.00 0.00 2.90
156 157 3.775202 AGGATATCGCATCGTTAGCATC 58.225 45.455 0.00 0.00 0.00 3.91
157 158 3.193479 TGAGGATATCGCATCGTTAGCAT 59.807 43.478 0.00 0.00 0.00 3.79
158 159 2.556622 TGAGGATATCGCATCGTTAGCA 59.443 45.455 0.00 0.00 0.00 3.49
159 160 3.217599 TGAGGATATCGCATCGTTAGC 57.782 47.619 0.00 0.00 0.00 3.09
160 161 4.546570 TGTTGAGGATATCGCATCGTTAG 58.453 43.478 0.00 0.00 0.00 2.34
161 162 4.577834 TGTTGAGGATATCGCATCGTTA 57.422 40.909 0.00 0.00 0.00 3.18
162 163 3.452755 TGTTGAGGATATCGCATCGTT 57.547 42.857 0.00 0.00 0.00 3.85
163 164 3.667497 ATGTTGAGGATATCGCATCGT 57.333 42.857 0.00 0.00 0.00 3.73
164 165 3.989817 TCAATGTTGAGGATATCGCATCG 59.010 43.478 0.00 0.00 32.50 3.84
165 166 7.601073 TTATCAATGTTGAGGATATCGCATC 57.399 36.000 1.65 0.00 41.08 3.91
166 167 7.984422 TTTATCAATGTTGAGGATATCGCAT 57.016 32.000 1.65 0.00 41.08 4.73
167 168 7.800155 TTTTATCAATGTTGAGGATATCGCA 57.200 32.000 1.65 0.00 41.08 5.10
173 174 9.768662 GGCATTATTTTTATCAATGTTGAGGAT 57.231 29.630 1.65 0.00 41.08 3.24
174 175 8.203485 GGGCATTATTTTTATCAATGTTGAGGA 58.797 33.333 1.65 0.00 41.08 3.71
175 176 7.986320 TGGGCATTATTTTTATCAATGTTGAGG 59.014 33.333 1.65 0.00 41.08 3.86
215 216 1.120184 TGGGCATGGCAGCTGAAAAA 61.120 50.000 20.43 0.00 34.17 1.94
216 217 1.533513 TGGGCATGGCAGCTGAAAA 60.534 52.632 20.43 1.23 34.17 2.29
217 218 2.117858 TGGGCATGGCAGCTGAAA 59.882 55.556 20.43 4.25 34.17 2.69
294 296 2.356695 GAGTGTAAAAACACGGGCACTT 59.643 45.455 3.22 0.00 44.71 3.16
298 300 0.236449 CCGAGTGTAAAAACACGGGC 59.764 55.000 5.45 0.00 46.53 6.13
301 303 5.141355 TGTAAACCGAGTGTAAAAACACG 57.859 39.130 3.22 0.00 44.71 4.49
316 318 0.719465 CGTGTGGCTCGATGTAAACC 59.281 55.000 0.00 0.00 0.00 3.27
318 320 0.319083 ACCGTGTGGCTCGATGTAAA 59.681 50.000 0.00 0.00 39.70 2.01
334 336 5.642063 ACTACAGGAAAATTACATGTCACCG 59.358 40.000 0.00 0.00 34.28 4.94
335 337 6.430000 ACACTACAGGAAAATTACATGTCACC 59.570 38.462 0.00 0.00 34.28 4.02
362 370 6.655078 ATCCTGTGTTCACTTAAAATTGCT 57.345 33.333 4.59 0.00 0.00 3.91
369 377 6.539464 ACGTTGTTAATCCTGTGTTCACTTAA 59.461 34.615 4.59 0.00 0.00 1.85
390 946 2.916716 ACGCGTTTGATATTCGTACGTT 59.083 40.909 16.05 6.93 34.89 3.99
453 1009 1.376037 CACCGCTCTCCTTCCAACC 60.376 63.158 0.00 0.00 0.00 3.77
471 1027 5.708697 ACTAGGCAATAAAGTTTGTACCACC 59.291 40.000 0.00 0.00 0.00 4.61
568 1124 0.797542 CGGCGCTAGCTACCTAGTAG 59.202 60.000 13.93 0.00 42.51 2.57
569 1125 1.233285 GCGGCGCTAGCTACCTAGTA 61.233 60.000 26.86 0.00 42.51 1.82
570 1126 2.553727 GCGGCGCTAGCTACCTAGT 61.554 63.158 26.86 0.00 42.51 2.57
919 1475 8.570488 TCGTCGAGCCATATTTTCTTATTAGTA 58.430 33.333 0.00 0.00 0.00 1.82
920 1476 7.431249 TCGTCGAGCCATATTTTCTTATTAGT 58.569 34.615 0.00 0.00 0.00 2.24
921 1477 7.869016 TCGTCGAGCCATATTTTCTTATTAG 57.131 36.000 0.00 0.00 0.00 1.73
1329 1894 2.503375 GTCGCCAGGACGTACGTG 60.503 66.667 28.16 12.57 35.61 4.49
1674 2239 4.514577 CTCATCGCGGCCTTCGGT 62.515 66.667 6.13 4.45 39.69 4.69
1770 2335 1.612950 TGTTTCCTTTCGTGCATGCAT 59.387 42.857 25.64 0.00 0.00 3.96
1771 2336 1.001487 CTGTTTCCTTTCGTGCATGCA 60.001 47.619 18.46 18.46 0.00 3.96
1772 2337 1.001378 ACTGTTTCCTTTCGTGCATGC 60.001 47.619 11.82 11.82 0.00 4.06
1773 2338 2.662791 CGACTGTTTCCTTTCGTGCATG 60.663 50.000 0.00 0.00 0.00 4.06
1774 2339 1.531149 CGACTGTTTCCTTTCGTGCAT 59.469 47.619 0.00 0.00 0.00 3.96
1775 2340 0.934496 CGACTGTTTCCTTTCGTGCA 59.066 50.000 0.00 0.00 0.00 4.57
1781 2346 1.202486 TCTGCGACGACTGTTTCCTTT 60.202 47.619 0.00 0.00 0.00 3.11
1784 2349 0.318784 ACTCTGCGACGACTGTTTCC 60.319 55.000 0.00 0.00 0.00 3.13
1785 2350 1.488527 AACTCTGCGACGACTGTTTC 58.511 50.000 0.00 0.00 0.00 2.78
1848 2414 7.898014 TCTCAAGGCAAATCTACTATCTACA 57.102 36.000 0.00 0.00 0.00 2.74
1855 2421 5.352569 CGTTTCATCTCAAGGCAAATCTACT 59.647 40.000 0.00 0.00 0.00 2.57
1858 2432 3.441572 CCGTTTCATCTCAAGGCAAATCT 59.558 43.478 0.00 0.00 0.00 2.40
1885 2459 4.992982 TGGCTGCCCCCACCTACA 62.993 66.667 17.53 0.00 0.00 2.74
1894 2468 4.008933 ACTCACGTCTGGCTGCCC 62.009 66.667 17.53 0.00 0.00 5.36
1936 2510 1.304713 CATGCTCAAGGCCCAGGTT 60.305 57.895 0.00 0.00 40.92 3.50
1966 2540 3.965539 CTCGTGGAGCAAGCAGGGG 62.966 68.421 0.00 0.00 0.00 4.79
1969 2543 1.739562 GGACTCGTGGAGCAAGCAG 60.740 63.158 0.00 0.00 32.04 4.24
1976 2550 0.679505 TTCAACTGGGACTCGTGGAG 59.320 55.000 0.00 0.00 35.52 3.86
2019 2611 2.668625 ACTCCTAGTAGGCTAACTGGC 58.331 52.381 11.75 0.00 42.15 4.85
2042 2634 1.014352 GTACGGACCATTGATGTGCC 58.986 55.000 0.00 0.00 0.00 5.01
2057 2649 2.719556 GTGATACTAGCATGCACGTACG 59.280 50.000 21.98 15.01 0.00 3.67
2058 2650 3.050619 GGTGATACTAGCATGCACGTAC 58.949 50.000 21.98 10.69 0.00 3.67
2059 2651 2.956333 AGGTGATACTAGCATGCACGTA 59.044 45.455 21.98 19.41 0.00 3.57
2060 2652 1.757118 AGGTGATACTAGCATGCACGT 59.243 47.619 21.98 17.84 0.00 4.49
2068 2686 4.737855 TCTTGTTCCAGGTGATACTAGC 57.262 45.455 0.00 0.00 0.00 3.42
2070 2688 5.598830 GGAGATCTTGTTCCAGGTGATACTA 59.401 44.000 0.00 0.00 33.55 1.82
2071 2689 4.407296 GGAGATCTTGTTCCAGGTGATACT 59.593 45.833 0.00 0.00 33.55 2.12
2073 2691 3.384789 CGGAGATCTTGTTCCAGGTGATA 59.615 47.826 0.00 0.00 32.87 2.15
2082 2700 1.996191 GCACAGACGGAGATCTTGTTC 59.004 52.381 0.00 0.00 0.00 3.18
2087 2705 1.827344 TCAATGCACAGACGGAGATCT 59.173 47.619 0.00 0.00 0.00 2.75
2159 2777 0.471617 CAGAGTTATGGGGAGGCAGG 59.528 60.000 0.00 0.00 0.00 4.85
2183 2801 0.665068 TGTTAGCGCTACACACACGG 60.665 55.000 18.63 0.00 0.00 4.94
2205 2845 3.667261 CACAAGTACTACACACGTACTGC 59.333 47.826 0.00 0.00 44.89 4.40
2206 2846 4.224433 CCACAAGTACTACACACGTACTG 58.776 47.826 0.00 0.00 44.89 2.74
2207 2847 3.304928 GCCACAAGTACTACACACGTACT 60.305 47.826 0.00 0.00 46.93 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.