Multiple sequence alignment - TraesCS5B01G235800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G235800 chr5B 100.000 3324 0 0 1 3324 416388892 416392215 0.000000e+00 6139.0
1 TraesCS5B01G235800 chr5B 92.042 1244 85 6 1137 2369 416418105 416419345 0.000000e+00 1736.0
2 TraesCS5B01G235800 chr5B 96.393 305 11 0 357 661 674376775 674376471 1.380000e-138 503.0
3 TraesCS5B01G235800 chr5B 100.000 40 0 0 2630 2669 416391468 416391507 1.280000e-09 75.0
4 TraesCS5B01G235800 chr5B 100.000 40 0 0 2577 2616 416391521 416391560 1.280000e-09 75.0
5 TraesCS5B01G235800 chr5D 94.052 1967 81 14 658 2616 353425241 353427179 0.000000e+00 2952.0
6 TraesCS5B01G235800 chr5D 89.808 1403 112 15 948 2341 353431969 353433349 0.000000e+00 1770.0
7 TraesCS5B01G235800 chr5D 91.667 360 17 6 1 356 353424907 353425257 1.390000e-133 486.0
8 TraesCS5B01G235800 chr5D 81.408 554 59 21 2810 3324 353427274 353427822 2.390000e-111 412.0
9 TraesCS5B01G235800 chr5A 93.022 1820 81 17 723 2525 452268592 452266802 0.000000e+00 2615.0
10 TraesCS5B01G235800 chr5A 93.392 1241 78 4 1124 2363 452211098 452209861 0.000000e+00 1834.0
11 TraesCS5B01G235800 chr5A 87.014 1440 143 22 948 2369 454346563 454347976 0.000000e+00 1583.0
12 TraesCS5B01G235800 chr5A 96.393 305 10 1 357 660 139481495 139481191 4.950000e-138 501.0
13 TraesCS5B01G235800 chr5A 90.083 363 22 5 1 356 452270803 452270448 3.020000e-125 459.0
14 TraesCS5B01G235800 chr5A 76.687 489 61 30 2847 3288 452266383 452265901 4.320000e-54 222.0
15 TraesCS5B01G235800 chr3B 96.393 305 10 1 357 660 536901300 536900996 4.950000e-138 501.0
16 TraesCS5B01G235800 chr3B 96.382 304 11 0 357 660 623667280 623667583 4.950000e-138 501.0
17 TraesCS5B01G235800 chr3B 79.435 496 77 11 1758 2236 694175072 694174585 8.890000e-86 327.0
18 TraesCS5B01G235800 chr3B 87.273 275 33 2 1466 1739 694175470 694175197 2.490000e-81 313.0
19 TraesCS5B01G235800 chr6A 95.779 308 13 0 357 664 181910152 181909845 6.400000e-137 497.0
20 TraesCS5B01G235800 chr1A 95.223 314 14 1 357 670 42226162 42225850 2.300000e-136 496.0
21 TraesCS5B01G235800 chr1A 93.373 332 18 4 340 670 516695533 516695205 3.850000e-134 488.0
22 TraesCS5B01G235800 chr2B 94.410 322 15 3 341 660 77779275 77779595 2.980000e-135 492.0
23 TraesCS5B01G235800 chr6B 93.884 327 16 4 357 679 551808491 551808817 1.070000e-134 490.0
24 TraesCS5B01G235800 chr3A 79.600 500 77 13 1758 2240 660053907 660053416 5.310000e-88 335.0
25 TraesCS5B01G235800 chr3A 86.909 275 34 2 1466 1739 660003145 660002872 1.160000e-79 307.0
26 TraesCS5B01G235800 chr3A 86.545 275 35 2 1466 1739 660054300 660054027 5.390000e-78 302.0
27 TraesCS5B01G235800 chr3A 71.616 458 101 26 1787 2231 653417480 653417039 7.590000e-17 99.0
28 TraesCS5B01G235800 chr3D 72.368 456 101 22 1787 2231 517812017 517811576 1.620000e-23 121.0
29 TraesCS5B01G235800 chr3D 90.698 43 3 1 2754 2796 12360220 12360261 4.630000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G235800 chr5B 416388892 416392215 3323 False 2096.333333 6139 100.000000 1 3324 3 chr5B.!!$F2 3323
1 TraesCS5B01G235800 chr5B 416418105 416419345 1240 False 1736.000000 1736 92.042000 1137 2369 1 chr5B.!!$F1 1232
2 TraesCS5B01G235800 chr5D 353431969 353433349 1380 False 1770.000000 1770 89.808000 948 2341 1 chr5D.!!$F1 1393
3 TraesCS5B01G235800 chr5D 353424907 353427822 2915 False 1283.333333 2952 89.042333 1 3324 3 chr5D.!!$F2 3323
4 TraesCS5B01G235800 chr5A 452209861 452211098 1237 True 1834.000000 1834 93.392000 1124 2363 1 chr5A.!!$R2 1239
5 TraesCS5B01G235800 chr5A 454346563 454347976 1413 False 1583.000000 1583 87.014000 948 2369 1 chr5A.!!$F1 1421
6 TraesCS5B01G235800 chr5A 452265901 452270803 4902 True 1098.666667 2615 86.597333 1 3288 3 chr5A.!!$R3 3287
7 TraesCS5B01G235800 chr3B 694174585 694175470 885 True 320.000000 327 83.354000 1466 2236 2 chr3B.!!$R2 770
8 TraesCS5B01G235800 chr3A 660053416 660054300 884 True 318.500000 335 83.072500 1466 2240 2 chr3A.!!$R3 774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
474 484 0.033366 GGGTTTTCGGCAATGCACTT 59.967 50.0 7.79 0.0 0.00 3.16 F
571 581 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.0 4.96 0.0 31.08 2.90 F
635 645 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.0 13.26 0.0 46.56 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1480 3335 2.027605 CACACCAGCACGTCGTCT 59.972 61.111 0.00 0.0 0.0 4.18 R
2032 3993 2.281484 TGCTCAAACAGGTCGGCC 60.281 61.111 0.00 0.0 0.0 6.13 R
2398 4381 2.360165 GCTTGTGATTCATGGCCTTAGG 59.640 50.000 3.32 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 71 4.490743 TCGAAACGAATAGTTGAGCATCA 58.509 39.130 0.00 0.00 43.37 3.07
71 73 5.062183 TCGAAACGAATAGTTGAGCATCAAG 59.938 40.000 0.00 0.00 44.64 3.02
97 99 5.070446 ACAAATATCAGCGGATGAAGGAGTA 59.930 40.000 9.82 0.00 42.53 2.59
98 100 4.792521 ATATCAGCGGATGAAGGAGTAC 57.207 45.455 9.82 0.00 42.53 2.73
119 121 5.118729 ACATGAAAATGGTACCCCGAATA 57.881 39.130 10.07 0.00 0.00 1.75
140 142 0.468585 TTGCATGCCTGGATCATCCC 60.469 55.000 16.68 0.00 35.03 3.85
153 155 4.329462 GATCATCCCGATCCCTATTAGC 57.671 50.000 0.00 0.00 44.25 3.09
219 229 5.398169 CATAGTATCAAGAGATCCTGTCGC 58.602 45.833 0.00 0.00 35.67 5.19
220 230 3.291584 AGTATCAAGAGATCCTGTCGCA 58.708 45.455 0.00 0.00 35.67 5.10
221 231 3.894427 AGTATCAAGAGATCCTGTCGCAT 59.106 43.478 0.00 0.00 35.67 4.73
222 232 2.591571 TCAAGAGATCCTGTCGCATG 57.408 50.000 0.00 0.00 0.00 4.06
223 233 0.935898 CAAGAGATCCTGTCGCATGC 59.064 55.000 7.91 7.91 0.00 4.06
224 234 0.179062 AAGAGATCCTGTCGCATGCC 60.179 55.000 13.15 0.00 0.00 4.40
225 235 1.953138 GAGATCCTGTCGCATGCCG 60.953 63.158 13.15 7.68 38.61 5.69
254 264 9.823647 TGCCTAATAAATCTAGAGAAACAAGAG 57.176 33.333 0.00 0.00 0.00 2.85
297 307 0.322008 GACTGCCCAAGGAGTTCCAG 60.322 60.000 0.28 0.00 38.89 3.86
348 358 3.006112 TGTTGGCTACCAAAGAACACA 57.994 42.857 0.00 0.00 45.73 3.72
349 359 2.685897 TGTTGGCTACCAAAGAACACAC 59.314 45.455 0.00 0.00 45.73 3.82
350 360 1.588674 TGGCTACCAAAGAACACACG 58.411 50.000 0.00 0.00 0.00 4.49
351 361 0.872388 GGCTACCAAAGAACACACGG 59.128 55.000 0.00 0.00 0.00 4.94
352 362 1.589803 GCTACCAAAGAACACACGGT 58.410 50.000 0.00 0.00 0.00 4.83
353 363 1.944709 GCTACCAAAGAACACACGGTT 59.055 47.619 0.00 0.00 44.10 4.44
354 364 2.356695 GCTACCAAAGAACACACGGTTT 59.643 45.455 0.00 0.00 40.63 3.27
355 365 3.560896 GCTACCAAAGAACACACGGTTTA 59.439 43.478 0.00 0.00 40.63 2.01
356 366 4.319261 GCTACCAAAGAACACACGGTTTAG 60.319 45.833 0.00 0.00 40.63 1.85
357 367 2.356695 ACCAAAGAACACACGGTTTAGC 59.643 45.455 0.00 0.00 40.63 3.09
358 368 2.601266 CCAAAGAACACACGGTTTAGCG 60.601 50.000 0.00 0.00 40.63 4.26
359 369 2.228138 AAGAACACACGGTTTAGCGA 57.772 45.000 8.45 0.00 40.63 4.93
360 370 2.228138 AGAACACACGGTTTAGCGAA 57.772 45.000 8.45 0.00 40.63 4.70
361 371 2.762745 AGAACACACGGTTTAGCGAAT 58.237 42.857 8.45 0.00 40.63 3.34
362 372 2.735134 AGAACACACGGTTTAGCGAATC 59.265 45.455 8.45 0.00 40.63 2.52
363 373 2.157834 ACACACGGTTTAGCGAATCA 57.842 45.000 8.45 0.00 0.00 2.57
364 374 2.485903 ACACACGGTTTAGCGAATCAA 58.514 42.857 8.45 0.00 0.00 2.57
365 375 2.222445 ACACACGGTTTAGCGAATCAAC 59.778 45.455 8.45 0.00 0.00 3.18
366 376 1.802365 ACACGGTTTAGCGAATCAACC 59.198 47.619 8.45 0.00 37.24 3.77
367 377 2.073816 CACGGTTTAGCGAATCAACCT 58.926 47.619 8.45 0.00 38.28 3.50
368 378 2.073816 ACGGTTTAGCGAATCAACCTG 58.926 47.619 8.45 0.00 38.28 4.00
369 379 2.073816 CGGTTTAGCGAATCAACCTGT 58.926 47.619 0.00 0.00 38.28 4.00
370 380 2.159707 CGGTTTAGCGAATCAACCTGTG 60.160 50.000 0.00 0.00 38.28 3.66
371 381 2.161609 GGTTTAGCGAATCAACCTGTGG 59.838 50.000 0.00 0.00 37.56 4.17
372 382 2.812011 GTTTAGCGAATCAACCTGTGGT 59.188 45.455 0.00 0.00 37.65 4.16
382 392 2.525105 AACCTGTGGTTGAGTTGGTT 57.475 45.000 0.71 0.00 45.07 3.67
383 393 3.655615 AACCTGTGGTTGAGTTGGTTA 57.344 42.857 0.71 0.00 45.07 2.85
384 394 3.208747 ACCTGTGGTTGAGTTGGTTAG 57.791 47.619 0.00 0.00 27.29 2.34
385 395 2.158667 ACCTGTGGTTGAGTTGGTTAGG 60.159 50.000 0.00 0.00 27.29 2.69
386 396 2.158667 CCTGTGGTTGAGTTGGTTAGGT 60.159 50.000 0.00 0.00 0.00 3.08
387 397 2.878406 CTGTGGTTGAGTTGGTTAGGTG 59.122 50.000 0.00 0.00 0.00 4.00
388 398 2.227194 GTGGTTGAGTTGGTTAGGTGG 58.773 52.381 0.00 0.00 0.00 4.61
389 399 2.128535 TGGTTGAGTTGGTTAGGTGGA 58.871 47.619 0.00 0.00 0.00 4.02
390 400 2.158726 TGGTTGAGTTGGTTAGGTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
391 401 2.158726 GGTTGAGTTGGTTAGGTGGACA 60.159 50.000 0.00 0.00 0.00 4.02
392 402 3.139077 GTTGAGTTGGTTAGGTGGACAG 58.861 50.000 0.00 0.00 0.00 3.51
393 403 2.404559 TGAGTTGGTTAGGTGGACAGT 58.595 47.619 0.00 0.00 0.00 3.55
394 404 2.104111 TGAGTTGGTTAGGTGGACAGTG 59.896 50.000 0.00 0.00 0.00 3.66
395 405 1.420138 AGTTGGTTAGGTGGACAGTGG 59.580 52.381 0.00 0.00 0.00 4.00
396 406 1.142262 GTTGGTTAGGTGGACAGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
397 407 2.369532 GTTGGTTAGGTGGACAGTGGTA 59.630 50.000 0.00 0.00 0.00 3.25
398 408 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
399 409 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
400 410 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
401 411 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
402 412 0.620700 AGGTGGACAGTGGTATCCCC 60.621 60.000 0.00 0.00 33.69 4.81
403 413 0.912487 GGTGGACAGTGGTATCCCCA 60.912 60.000 0.00 0.00 42.51 4.96
410 420 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
411 421 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
412 422 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
413 423 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
429 439 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
430 440 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
431 441 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
432 442 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
433 443 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
434 444 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
435 445 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
436 446 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
437 447 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
438 448 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
439 449 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
440 450 2.418368 TCCTGGTGCTCGCATTATTT 57.582 45.000 0.00 0.00 0.00 1.40
441 451 2.288666 TCCTGGTGCTCGCATTATTTC 58.711 47.619 0.00 0.00 0.00 2.17
442 452 2.092968 TCCTGGTGCTCGCATTATTTCT 60.093 45.455 0.00 0.00 0.00 2.52
443 453 2.032550 CCTGGTGCTCGCATTATTTCTG 59.967 50.000 0.00 0.00 0.00 3.02
444 454 2.016318 TGGTGCTCGCATTATTTCTGG 58.984 47.619 0.00 0.00 0.00 3.86
445 455 2.288666 GGTGCTCGCATTATTTCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
446 456 2.880890 GGTGCTCGCATTATTTCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
447 457 3.316308 GGTGCTCGCATTATTTCTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
448 458 4.202050 GGTGCTCGCATTATTTCTGGATTT 60.202 41.667 0.00 0.00 0.00 2.17
449 459 5.008613 GGTGCTCGCATTATTTCTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
450 460 6.294176 GGTGCTCGCATTATTTCTGGATTTAT 60.294 38.462 0.00 0.00 0.00 1.40
451 461 7.141363 GTGCTCGCATTATTTCTGGATTTATT 58.859 34.615 0.00 0.00 0.00 1.40
452 462 7.649306 GTGCTCGCATTATTTCTGGATTTATTT 59.351 33.333 0.00 0.00 0.00 1.40
453 463 7.862372 TGCTCGCATTATTTCTGGATTTATTTC 59.138 33.333 0.00 0.00 0.00 2.17
454 464 7.862372 GCTCGCATTATTTCTGGATTTATTTCA 59.138 33.333 0.00 0.00 0.00 2.69
455 465 9.390795 CTCGCATTATTTCTGGATTTATTTCAG 57.609 33.333 0.00 0.00 0.00 3.02
456 466 8.352201 TCGCATTATTTCTGGATTTATTTCAGG 58.648 33.333 0.00 0.00 0.00 3.86
457 467 7.596248 CGCATTATTTCTGGATTTATTTCAGGG 59.404 37.037 0.00 0.00 0.00 4.45
458 468 8.424133 GCATTATTTCTGGATTTATTTCAGGGT 58.576 33.333 0.00 0.00 0.00 4.34
463 473 6.509418 TCTGGATTTATTTCAGGGTTTTCG 57.491 37.500 0.00 0.00 0.00 3.46
464 474 5.417580 TCTGGATTTATTTCAGGGTTTTCGG 59.582 40.000 0.00 0.00 0.00 4.30
465 475 4.081917 TGGATTTATTTCAGGGTTTTCGGC 60.082 41.667 0.00 0.00 0.00 5.54
466 476 4.081917 GGATTTATTTCAGGGTTTTCGGCA 60.082 41.667 0.00 0.00 0.00 5.69
467 477 4.939052 TTTATTTCAGGGTTTTCGGCAA 57.061 36.364 0.00 0.00 0.00 4.52
468 478 5.476091 TTTATTTCAGGGTTTTCGGCAAT 57.524 34.783 0.00 0.00 0.00 3.56
469 479 2.810439 TTTCAGGGTTTTCGGCAATG 57.190 45.000 0.00 0.00 0.00 2.82
470 480 0.316841 TTCAGGGTTTTCGGCAATGC 59.683 50.000 0.00 0.00 0.00 3.56
471 481 0.825425 TCAGGGTTTTCGGCAATGCA 60.825 50.000 7.79 0.00 0.00 3.96
472 482 0.667184 CAGGGTTTTCGGCAATGCAC 60.667 55.000 7.79 0.00 0.00 4.57
473 483 0.827507 AGGGTTTTCGGCAATGCACT 60.828 50.000 7.79 0.00 0.00 4.40
474 484 0.033366 GGGTTTTCGGCAATGCACTT 59.967 50.000 7.79 0.00 0.00 3.16
475 485 1.540146 GGGTTTTCGGCAATGCACTTT 60.540 47.619 7.79 0.00 0.00 2.66
476 486 1.792367 GGTTTTCGGCAATGCACTTTC 59.208 47.619 7.79 0.00 0.00 2.62
477 487 2.468831 GTTTTCGGCAATGCACTTTCA 58.531 42.857 7.79 0.00 0.00 2.69
478 488 2.420628 TTTCGGCAATGCACTTTCAG 57.579 45.000 7.79 0.00 0.00 3.02
479 489 1.317613 TTCGGCAATGCACTTTCAGT 58.682 45.000 7.79 0.00 0.00 3.41
481 491 0.387622 CGGCAATGCACTTTCAGTGG 60.388 55.000 7.79 0.00 46.01 4.00
482 492 0.037975 GGCAATGCACTTTCAGTGGG 60.038 55.000 7.79 0.00 46.01 4.61
483 493 0.961019 GCAATGCACTTTCAGTGGGA 59.039 50.000 0.00 0.00 46.01 4.37
484 494 1.068055 GCAATGCACTTTCAGTGGGAG 60.068 52.381 0.00 0.00 46.01 4.30
485 495 1.542915 CAATGCACTTTCAGTGGGAGG 59.457 52.381 6.05 0.00 46.01 4.30
486 496 1.067295 ATGCACTTTCAGTGGGAGGA 58.933 50.000 6.05 0.00 46.01 3.71
487 497 0.397941 TGCACTTTCAGTGGGAGGAG 59.602 55.000 6.05 0.00 46.01 3.69
488 498 0.687354 GCACTTTCAGTGGGAGGAGA 59.313 55.000 6.05 0.00 46.01 3.71
489 499 1.609320 GCACTTTCAGTGGGAGGAGAC 60.609 57.143 6.05 0.00 46.01 3.36
490 500 0.969894 ACTTTCAGTGGGAGGAGACG 59.030 55.000 0.00 0.00 0.00 4.18
491 501 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
492 502 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
493 503 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
494 504 0.112606 TCAGTGGGAGGAGACGTTCT 59.887 55.000 0.00 0.00 0.00 3.01
495 505 0.528470 CAGTGGGAGGAGACGTTCTC 59.472 60.000 0.00 0.00 42.66 2.87
496 506 0.961358 AGTGGGAGGAGACGTTCTCG 60.961 60.000 0.00 0.00 44.28 4.04
516 526 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
519 529 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
521 531 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
524 534 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
525 535 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
526 536 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
527 537 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
528 538 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
529 539 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
530 540 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
531 541 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
532 542 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
533 543 4.741342 CCTACGGTGACTTCGTAAATCTT 58.259 43.478 0.00 0.00 41.62 2.40
534 544 5.677091 GCCTACGGTGACTTCGTAAATCTTA 60.677 44.000 0.00 0.00 41.62 2.10
535 545 6.324819 CCTACGGTGACTTCGTAAATCTTAA 58.675 40.000 0.00 0.00 41.62 1.85
536 546 6.471519 CCTACGGTGACTTCGTAAATCTTAAG 59.528 42.308 0.00 0.00 41.62 1.85
537 547 6.017400 ACGGTGACTTCGTAAATCTTAAGA 57.983 37.500 7.82 7.82 39.22 2.10
538 548 6.628185 ACGGTGACTTCGTAAATCTTAAGAT 58.372 36.000 12.37 12.37 39.22 2.40
539 549 6.530534 ACGGTGACTTCGTAAATCTTAAGATG 59.469 38.462 18.61 6.47 39.22 2.90
540 550 6.750501 CGGTGACTTCGTAAATCTTAAGATGA 59.249 38.462 18.61 8.72 34.49 2.92
541 551 7.435488 CGGTGACTTCGTAAATCTTAAGATGAT 59.565 37.037 18.61 12.88 34.49 2.45
542 552 9.745880 GGTGACTTCGTAAATCTTAAGATGATA 57.254 33.333 18.61 11.94 34.49 2.15
546 556 9.209175 ACTTCGTAAATCTTAAGATGATATGCC 57.791 33.333 18.61 3.91 34.49 4.40
547 557 7.812309 TCGTAAATCTTAAGATGATATGCCG 57.188 36.000 18.61 13.49 34.49 5.69
548 558 6.811665 TCGTAAATCTTAAGATGATATGCCGG 59.188 38.462 18.61 0.00 34.49 6.13
549 559 5.886960 AAATCTTAAGATGATATGCCGGC 57.113 39.130 22.73 22.73 34.49 6.13
550 560 4.833478 ATCTTAAGATGATATGCCGGCT 57.167 40.909 29.70 15.76 32.68 5.52
551 561 4.193826 TCTTAAGATGATATGCCGGCTC 57.806 45.455 29.70 17.89 0.00 4.70
552 562 3.578282 TCTTAAGATGATATGCCGGCTCA 59.422 43.478 29.70 23.34 0.00 4.26
553 563 2.469274 AAGATGATATGCCGGCTCAG 57.531 50.000 29.70 0.00 0.00 3.35
554 564 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
555 565 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
556 566 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
557 567 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
558 568 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
559 569 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
560 570 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
561 571 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
562 572 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
563 573 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
564 574 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
565 575 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
566 576 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
567 577 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
568 578 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
569 579 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
570 580 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
571 581 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
572 582 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
573 583 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
574 584 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
575 585 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
576 586 1.457643 TCGGAGGTGCTCATAGGGG 60.458 63.158 0.00 0.00 31.08 4.79
577 587 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
578 588 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
579 589 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
580 590 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
581 591 0.941963 AGGTGCTCATAGGGGTAGGA 59.058 55.000 0.00 0.00 0.00 2.94
582 592 1.509961 AGGTGCTCATAGGGGTAGGAT 59.490 52.381 0.00 0.00 0.00 3.24
583 593 1.625818 GGTGCTCATAGGGGTAGGATG 59.374 57.143 0.00 0.00 0.00 3.51
584 594 2.330216 GTGCTCATAGGGGTAGGATGT 58.670 52.381 0.00 0.00 0.00 3.06
585 595 2.037772 GTGCTCATAGGGGTAGGATGTG 59.962 54.545 0.00 0.00 0.00 3.21
586 596 1.002544 GCTCATAGGGGTAGGATGTGC 59.997 57.143 0.00 0.00 0.00 4.57
587 597 1.273606 CTCATAGGGGTAGGATGTGCG 59.726 57.143 0.00 0.00 0.00 5.34
588 598 1.048601 CATAGGGGTAGGATGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
589 599 1.048601 ATAGGGGTAGGATGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
590 600 0.324923 TAGGGGTAGGATGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
591 601 1.449601 GGGGTAGGATGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
592 602 1.295423 GGGTAGGATGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
593 603 1.019278 GGGTAGGATGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
594 604 1.635663 GGTAGGATGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
595 605 1.736282 TAGGATGTGCGTGTGTGCG 60.736 57.895 0.00 0.00 37.81 5.34
596 606 2.428960 TAGGATGTGCGTGTGTGCGT 62.429 55.000 0.00 0.00 37.81 5.24
597 607 2.631428 GATGTGCGTGTGTGCGTT 59.369 55.556 0.00 0.00 37.81 4.84
598 608 1.438710 GATGTGCGTGTGTGCGTTC 60.439 57.895 0.00 0.00 37.81 3.95
599 609 2.100024 GATGTGCGTGTGTGCGTTCA 62.100 55.000 0.00 0.00 37.81 3.18
600 610 1.506309 ATGTGCGTGTGTGCGTTCAT 61.506 50.000 0.00 0.00 37.81 2.57
601 611 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
602 612 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
603 613 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
604 614 1.011968 GCGTGTGTGCGTTCATAGGA 61.012 55.000 0.00 0.00 0.00 2.94
605 615 1.424403 CGTGTGTGCGTTCATAGGAA 58.576 50.000 0.00 0.00 0.00 3.36
606 616 1.999735 CGTGTGTGCGTTCATAGGAAT 59.000 47.619 0.00 0.00 35.05 3.01
607 617 2.222796 CGTGTGTGCGTTCATAGGAATG 60.223 50.000 4.97 4.97 41.92 2.67
608 618 3.000041 GTGTGTGCGTTCATAGGAATGA 59.000 45.455 13.33 0.00 41.62 2.57
609 619 3.062639 GTGTGTGCGTTCATAGGAATGAG 59.937 47.826 13.33 0.26 42.97 2.90
610 620 3.262420 GTGTGCGTTCATAGGAATGAGT 58.738 45.455 13.33 0.00 42.97 3.41
611 621 3.062639 GTGTGCGTTCATAGGAATGAGTG 59.937 47.826 13.33 0.00 42.97 3.51
612 622 3.262420 GTGCGTTCATAGGAATGAGTGT 58.738 45.455 13.33 0.00 42.97 3.55
613 623 4.081917 TGTGCGTTCATAGGAATGAGTGTA 60.082 41.667 13.33 0.00 42.97 2.90
614 624 5.050490 GTGCGTTCATAGGAATGAGTGTAT 58.950 41.667 13.33 0.00 42.97 2.29
615 625 5.049828 TGCGTTCATAGGAATGAGTGTATG 58.950 41.667 13.33 0.00 42.97 2.39
616 626 4.084328 GCGTTCATAGGAATGAGTGTATGC 60.084 45.833 13.33 0.00 42.97 3.14
617 627 4.148871 CGTTCATAGGAATGAGTGTATGCG 59.851 45.833 3.19 0.00 42.97 4.73
618 628 3.653344 TCATAGGAATGAGTGTATGCGC 58.347 45.455 0.00 0.00 37.20 6.09
619 629 2.134201 TAGGAATGAGTGTATGCGCG 57.866 50.000 0.00 0.00 0.00 6.86
620 630 0.175760 AGGAATGAGTGTATGCGCGT 59.824 50.000 8.43 7.55 0.00 6.01
621 631 0.301687 GGAATGAGTGTATGCGCGTG 59.698 55.000 13.61 0.00 0.00 5.34
622 632 0.999406 GAATGAGTGTATGCGCGTGT 59.001 50.000 13.61 0.00 0.00 4.49
623 633 2.190161 GAATGAGTGTATGCGCGTGTA 58.810 47.619 13.61 0.00 0.00 2.90
624 634 2.509052 ATGAGTGTATGCGCGTGTAT 57.491 45.000 13.61 4.63 0.00 2.29
625 635 3.636282 ATGAGTGTATGCGCGTGTATA 57.364 42.857 13.61 2.40 0.00 1.47
626 636 3.636282 TGAGTGTATGCGCGTGTATAT 57.364 42.857 13.61 0.00 0.00 0.86
627 637 3.305110 TGAGTGTATGCGCGTGTATATG 58.695 45.455 13.61 0.00 0.00 1.78
628 638 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
629 639 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
630 640 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
633 643 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
634 644 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
635 645 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
636 646 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
637 647 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
638 648 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
639 649 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
640 650 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
641 651 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
642 652 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
643 653 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
644 654 2.680312 ATGAGCGCTTGTGTCTGTAT 57.320 45.000 13.26 0.00 0.00 2.29
645 655 2.455674 TGAGCGCTTGTGTCTGTATT 57.544 45.000 13.26 0.00 0.00 1.89
646 656 2.068519 TGAGCGCTTGTGTCTGTATTG 58.931 47.619 13.26 0.00 0.00 1.90
647 657 2.288763 TGAGCGCTTGTGTCTGTATTGA 60.289 45.455 13.26 0.00 0.00 2.57
648 658 2.932614 GAGCGCTTGTGTCTGTATTGAT 59.067 45.455 13.26 0.00 0.00 2.57
649 659 2.674852 AGCGCTTGTGTCTGTATTGATG 59.325 45.455 2.64 0.00 0.00 3.07
650 660 2.789092 GCGCTTGTGTCTGTATTGATGC 60.789 50.000 0.00 0.00 0.00 3.91
651 661 2.674852 CGCTTGTGTCTGTATTGATGCT 59.325 45.455 0.00 0.00 0.00 3.79
652 662 3.865164 CGCTTGTGTCTGTATTGATGCTA 59.135 43.478 0.00 0.00 0.00 3.49
653 663 4.329801 CGCTTGTGTCTGTATTGATGCTAA 59.670 41.667 0.00 0.00 0.00 3.09
654 664 5.163864 CGCTTGTGTCTGTATTGATGCTAAA 60.164 40.000 0.00 0.00 0.00 1.85
655 665 6.611381 GCTTGTGTCTGTATTGATGCTAAAA 58.389 36.000 0.00 0.00 0.00 1.52
656 666 7.083858 GCTTGTGTCTGTATTGATGCTAAAAA 58.916 34.615 0.00 0.00 0.00 1.94
681 691 6.549912 AAGGAACACACGGTTTATTTAGTC 57.450 37.500 0.00 0.00 40.63 2.59
685 695 4.824289 ACACACGGTTTATTTAGTCGGAT 58.176 39.130 0.00 0.00 0.00 4.18
699 1401 4.392921 AGTCGGATGTTGGTATCTTCAG 57.607 45.455 0.00 0.00 0.00 3.02
700 1402 3.769844 AGTCGGATGTTGGTATCTTCAGT 59.230 43.478 0.00 0.00 0.00 3.41
702 1404 4.567159 GTCGGATGTTGGTATCTTCAGTTC 59.433 45.833 0.00 0.00 0.00 3.01
712 1414 9.313118 GTTGGTATCTTCAGTTCAAAATTGTTT 57.687 29.630 0.00 0.00 0.00 2.83
843 2661 3.570125 GCAAGTTTTGAGGCCTCTTAGTT 59.430 43.478 32.28 21.34 0.00 2.24
858 2676 7.044181 GCCTCTTAGTTAAATTACGTACCCTT 58.956 38.462 0.00 0.00 0.00 3.95
1064 2900 1.303561 AGGCGACCTGGTACGTACA 60.304 57.895 26.02 11.97 29.57 2.90
1066 2902 1.512734 GCGACCTGGTACGTACACG 60.513 63.158 26.02 20.71 46.33 4.49
1067 2903 1.512734 CGACCTGGTACGTACACGC 60.513 63.158 26.02 10.43 44.43 5.34
1072 2908 2.126346 GGTACGTACACGCGGCTT 60.126 61.111 26.02 0.00 44.43 4.35
1178 3021 0.608856 TTGTGCATGCAGGTGTAGGG 60.609 55.000 23.41 0.00 0.00 3.53
1395 3238 2.363018 GCTCCCCTGCTTTTCCCC 60.363 66.667 0.00 0.00 0.00 4.81
1626 3481 4.473520 CTGGCTCCGCGGTTGGAT 62.474 66.667 27.15 0.00 37.41 3.41
2332 4315 1.006337 CAGAGCCTGATCTAGCCGC 60.006 63.158 4.20 0.00 32.44 6.53
2345 4328 0.913205 TAGCCGCCCATCTACCAAAA 59.087 50.000 0.00 0.00 0.00 2.44
2346 4329 0.039035 AGCCGCCCATCTACCAAAAA 59.961 50.000 0.00 0.00 0.00 1.94
2395 4378 8.401955 AATTCCACCCCTAGAAAATCTACTAA 57.598 34.615 0.00 0.00 0.00 2.24
2396 4379 7.817910 TTCCACCCCTAGAAAATCTACTAAA 57.182 36.000 0.00 0.00 0.00 1.85
2397 4380 8.401955 TTCCACCCCTAGAAAATCTACTAAAT 57.598 34.615 0.00 0.00 0.00 1.40
2398 4381 8.030913 TCCACCCCTAGAAAATCTACTAAATC 57.969 38.462 0.00 0.00 0.00 2.17
2399 4382 7.072076 TCCACCCCTAGAAAATCTACTAAATCC 59.928 40.741 0.00 0.00 0.00 3.01
2422 4405 0.458669 GGCCATGAATCACAAGCAGG 59.541 55.000 0.00 0.00 34.77 4.85
2523 4538 6.939730 TGTGTGAAGTGATGGTAATGTATGTT 59.060 34.615 0.00 0.00 0.00 2.71
2531 4546 5.877564 TGATGGTAATGTATGTTTGAGCGAA 59.122 36.000 0.00 0.00 0.00 4.70
2564 4579 4.702831 TCTCTTTTGTGTGTATGTGCAGA 58.297 39.130 0.00 0.00 0.00 4.26
2574 4589 2.813754 TGTATGTGCAGAAAACTCAGCC 59.186 45.455 0.00 0.00 0.00 4.85
2604 4619 4.843220 AGCTGCAATCTATTTATGTGCC 57.157 40.909 1.02 0.00 34.25 5.01
2605 4620 4.467769 AGCTGCAATCTATTTATGTGCCT 58.532 39.130 1.02 0.00 34.25 4.75
2606 4621 4.891756 AGCTGCAATCTATTTATGTGCCTT 59.108 37.500 1.02 0.00 34.25 4.35
2607 4622 5.361857 AGCTGCAATCTATTTATGTGCCTTT 59.638 36.000 1.02 0.00 34.25 3.11
2608 4623 5.461078 GCTGCAATCTATTTATGTGCCTTTG 59.539 40.000 0.00 0.00 34.25 2.77
2609 4624 6.528537 TGCAATCTATTTATGTGCCTTTGT 57.471 33.333 0.00 0.00 34.25 2.83
2610 4625 6.331845 TGCAATCTATTTATGTGCCTTTGTG 58.668 36.000 0.00 0.00 34.25 3.33
2611 4626 6.071447 TGCAATCTATTTATGTGCCTTTGTGT 60.071 34.615 0.00 0.00 34.25 3.72
2612 4627 6.813152 GCAATCTATTTATGTGCCTTTGTGTT 59.187 34.615 0.00 0.00 0.00 3.32
2613 4628 7.201461 GCAATCTATTTATGTGCCTTTGTGTTG 60.201 37.037 0.00 0.00 0.00 3.33
2614 4629 6.266168 TCTATTTATGTGCCTTTGTGTTGG 57.734 37.500 0.00 0.00 0.00 3.77
2615 4630 4.953940 ATTTATGTGCCTTTGTGTTGGT 57.046 36.364 0.00 0.00 0.00 3.67
2616 4631 3.724508 TTATGTGCCTTTGTGTTGGTG 57.275 42.857 0.00 0.00 0.00 4.17
2617 4632 1.774110 ATGTGCCTTTGTGTTGGTGA 58.226 45.000 0.00 0.00 0.00 4.02
2618 4633 1.550327 TGTGCCTTTGTGTTGGTGAA 58.450 45.000 0.00 0.00 0.00 3.18
2619 4634 1.895798 TGTGCCTTTGTGTTGGTGAAA 59.104 42.857 0.00 0.00 0.00 2.69
2620 4635 2.300152 TGTGCCTTTGTGTTGGTGAAAA 59.700 40.909 0.00 0.00 0.00 2.29
2621 4636 3.244215 TGTGCCTTTGTGTTGGTGAAAAA 60.244 39.130 0.00 0.00 0.00 1.94
2657 4672 4.843220 AGCTGCAATCTATTTATGTGCC 57.157 40.909 1.02 0.00 34.25 5.01
2685 4701 0.242017 GGTTTGCTAAGCTGCAGTGG 59.758 55.000 16.64 0.00 44.27 4.00
2700 4716 3.142174 GCAGTGGAGCACTAGTCTTTTT 58.858 45.455 0.00 0.00 43.43 1.94
2733 4749 1.171308 TCACCTAGAAGCTAACGCGT 58.829 50.000 5.58 5.58 42.32 6.01
2739 4755 4.354155 AAGCTAACGCGTGCTTCA 57.646 50.000 25.77 4.59 45.09 3.02
2740 4756 1.860078 AAGCTAACGCGTGCTTCAC 59.140 52.632 25.77 8.58 45.09 3.18
2741 4757 1.566018 AAGCTAACGCGTGCTTCACC 61.566 55.000 25.77 6.59 45.09 4.02
2742 4758 2.769617 CTAACGCGTGCTTCACCG 59.230 61.111 14.98 6.38 35.41 4.94
2743 4759 3.348967 CTAACGCGTGCTTCACCGC 62.349 63.158 14.98 0.00 33.67 5.68
2751 4767 4.736631 GCTTCACCGCGCCGTTTC 62.737 66.667 0.00 0.00 0.00 2.78
2752 4768 3.342627 CTTCACCGCGCCGTTTCA 61.343 61.111 0.00 0.00 0.00 2.69
2753 4769 3.573489 CTTCACCGCGCCGTTTCAC 62.573 63.158 0.00 0.00 0.00 3.18
2767 4783 3.793775 TTCACCGCGCCGTTCTTCA 62.794 57.895 0.00 0.00 0.00 3.02
2769 4785 4.295119 ACCGCGCCGTTCTTCACT 62.295 61.111 0.00 0.00 0.00 3.41
2784 4800 6.594159 CGTTCTTCACTTGTGGGATTAACTAT 59.406 38.462 0.64 0.00 0.00 2.12
2791 4807 9.362151 TCACTTGTGGGATTAACTATTCTTTTT 57.638 29.630 0.64 0.00 0.00 1.94
2854 4989 9.936759 ATTATTACGGATGGTTGTTTCATTTTT 57.063 25.926 0.00 0.00 0.00 1.94
2929 5064 5.806654 TCATATATTGTGCTGGTCTGCTA 57.193 39.130 1.84 0.00 0.00 3.49
2933 5068 2.857186 TTGTGCTGGTCTGCTATTGA 57.143 45.000 1.84 0.00 0.00 2.57
2972 5107 6.547880 TCTGAGAGAAGAGTGAACTTGTTAGT 59.452 38.462 0.00 0.00 35.68 2.24
2995 5158 3.050275 GTCTTGGTGTCTGCCGGC 61.050 66.667 22.73 22.73 0.00 6.13
3010 5173 1.667830 CGGCGGTGATTGTGTGAGT 60.668 57.895 0.00 0.00 0.00 3.41
3016 5179 2.028476 CGGTGATTGTGTGAGTCCCTTA 60.028 50.000 0.00 0.00 0.00 2.69
3031 5194 4.282195 AGTCCCTTATGAGCTCTTATTCCG 59.718 45.833 16.19 1.96 0.00 4.30
3057 5220 5.484173 TGAAATCATGGAATCGTTGCTAC 57.516 39.130 0.00 0.00 0.00 3.58
3059 5222 5.065090 TGAAATCATGGAATCGTTGCTACAG 59.935 40.000 0.00 0.00 0.00 2.74
3075 5238 3.321648 AGCACTCACATGGGCCGA 61.322 61.111 0.00 0.00 0.00 5.54
3102 5265 1.291588 CTCTGCCTCGCTCAACACT 59.708 57.895 0.00 0.00 0.00 3.55
3107 5270 2.091112 CCTCGCTCAACACTGCTCG 61.091 63.158 0.00 0.00 0.00 5.03
3108 5271 2.724708 CTCGCTCAACACTGCTCGC 61.725 63.158 0.00 0.00 0.00 5.03
3120 5283 2.049063 GCTCGCTGTTCGGTCACT 60.049 61.111 0.00 0.00 39.05 3.41
3122 5285 1.891060 GCTCGCTGTTCGGTCACTTG 61.891 60.000 0.00 0.00 39.05 3.16
3137 5308 3.634910 GTCACTTGCTTAACTTTTCCCCA 59.365 43.478 0.00 0.00 0.00 4.96
3142 5313 3.904717 TGCTTAACTTTTCCCCACTTGA 58.095 40.909 0.00 0.00 0.00 3.02
3145 5316 5.365314 TGCTTAACTTTTCCCCACTTGATTT 59.635 36.000 0.00 0.00 0.00 2.17
3158 5329 5.705441 CCCACTTGATTTACTGCTAACTCAA 59.295 40.000 0.00 0.00 33.07 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 71 5.297776 CCTTCATCCGCTGATATTTGTTCTT 59.702 40.000 0.00 0.00 32.72 2.52
71 73 4.816385 TCCTTCATCCGCTGATATTTGTTC 59.184 41.667 0.00 0.00 32.72 3.18
83 85 2.890808 TCATGTACTCCTTCATCCGC 57.109 50.000 0.00 0.00 0.00 5.54
119 121 1.688772 GATGATCCAGGCATGCAAGT 58.311 50.000 21.36 0.00 0.00 3.16
140 142 4.022464 GATCACTCGCTAATAGGGATCG 57.978 50.000 7.50 2.72 42.39 3.69
188 198 6.661377 GGATCTCTTGATACTATGCCTAGTCA 59.339 42.308 4.81 0.00 39.04 3.41
222 232 4.253685 TCTAGATTTATTAGGCATGCGGC 58.746 43.478 12.44 0.00 43.74 6.53
223 233 5.724328 TCTCTAGATTTATTAGGCATGCGG 58.276 41.667 12.44 0.00 0.00 5.69
224 234 7.171508 TGTTTCTCTAGATTTATTAGGCATGCG 59.828 37.037 12.44 0.00 0.00 4.73
225 235 8.383318 TGTTTCTCTAGATTTATTAGGCATGC 57.617 34.615 9.90 9.90 0.00 4.06
254 264 2.827921 ACCCTTCAATTGGTCATGCTTC 59.172 45.455 5.42 0.00 0.00 3.86
297 307 0.889186 ACTGGTGTTTGCCATCGGAC 60.889 55.000 0.00 0.00 37.96 4.79
348 358 2.073816 CAGGTTGATTCGCTAAACCGT 58.926 47.619 0.00 0.00 46.51 4.83
349 359 2.073816 ACAGGTTGATTCGCTAAACCG 58.926 47.619 0.00 0.00 46.51 4.44
350 360 2.161609 CCACAGGTTGATTCGCTAAACC 59.838 50.000 0.00 0.00 43.08 3.27
351 361 2.812011 ACCACAGGTTGATTCGCTAAAC 59.188 45.455 0.00 0.00 27.29 2.01
352 362 3.134574 ACCACAGGTTGATTCGCTAAA 57.865 42.857 0.00 0.00 27.29 1.85
353 363 2.851263 ACCACAGGTTGATTCGCTAA 57.149 45.000 0.00 0.00 27.29 3.09
354 364 2.851263 AACCACAGGTTGATTCGCTA 57.149 45.000 0.00 0.00 45.07 4.26
355 365 3.725754 AACCACAGGTTGATTCGCT 57.274 47.368 0.00 0.00 45.07 4.93
364 374 2.158667 CCTAACCAACTCAACCACAGGT 60.159 50.000 0.00 0.00 37.65 4.00
365 375 2.158667 ACCTAACCAACTCAACCACAGG 60.159 50.000 0.00 0.00 0.00 4.00
366 376 2.878406 CACCTAACCAACTCAACCACAG 59.122 50.000 0.00 0.00 0.00 3.66
367 377 2.422235 CCACCTAACCAACTCAACCACA 60.422 50.000 0.00 0.00 0.00 4.17
368 378 2.158726 TCCACCTAACCAACTCAACCAC 60.159 50.000 0.00 0.00 0.00 4.16
369 379 2.128535 TCCACCTAACCAACTCAACCA 58.871 47.619 0.00 0.00 0.00 3.67
370 380 2.158726 TGTCCACCTAACCAACTCAACC 60.159 50.000 0.00 0.00 0.00 3.77
371 381 3.139077 CTGTCCACCTAACCAACTCAAC 58.861 50.000 0.00 0.00 0.00 3.18
372 382 2.775384 ACTGTCCACCTAACCAACTCAA 59.225 45.455 0.00 0.00 0.00 3.02
373 383 2.104111 CACTGTCCACCTAACCAACTCA 59.896 50.000 0.00 0.00 0.00 3.41
374 384 2.550208 CCACTGTCCACCTAACCAACTC 60.550 54.545 0.00 0.00 0.00 3.01
375 385 1.420138 CCACTGTCCACCTAACCAACT 59.580 52.381 0.00 0.00 0.00 3.16
376 386 1.142262 ACCACTGTCCACCTAACCAAC 59.858 52.381 0.00 0.00 0.00 3.77
377 387 1.513858 ACCACTGTCCACCTAACCAA 58.486 50.000 0.00 0.00 0.00 3.67
378 388 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
379 389 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
380 390 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
395 405 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
396 406 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
406 416 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
411 421 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
412 422 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
413 423 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
414 424 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
415 425 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
416 426 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
417 427 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
418 428 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
419 429 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
420 430 2.645838 AATAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
421 431 2.092968 AGAAATAATGCGAGCACCAGGA 60.093 45.455 0.00 0.00 0.00 3.86
422 432 2.032550 CAGAAATAATGCGAGCACCAGG 59.967 50.000 0.00 0.00 0.00 4.45
423 433 2.032550 CCAGAAATAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
424 434 2.016318 CCAGAAATAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
425 435 2.288666 TCCAGAAATAATGCGAGCACC 58.711 47.619 0.00 0.00 0.00 5.01
426 436 4.558538 AATCCAGAAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
427 437 6.882610 ATAAATCCAGAAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
428 438 7.862372 TGAAATAAATCCAGAAATAATGCGAGC 59.138 33.333 0.00 0.00 0.00 5.03
429 439 9.390795 CTGAAATAAATCCAGAAATAATGCGAG 57.609 33.333 0.00 0.00 0.00 5.03
430 440 8.352201 CCTGAAATAAATCCAGAAATAATGCGA 58.648 33.333 0.00 0.00 0.00 5.10
431 441 7.596248 CCCTGAAATAAATCCAGAAATAATGCG 59.404 37.037 0.00 0.00 0.00 4.73
432 442 8.424133 ACCCTGAAATAAATCCAGAAATAATGC 58.576 33.333 0.00 0.00 0.00 3.56
437 447 8.034804 CGAAAACCCTGAAATAAATCCAGAAAT 58.965 33.333 0.00 0.00 0.00 2.17
438 448 7.375053 CGAAAACCCTGAAATAAATCCAGAAA 58.625 34.615 0.00 0.00 0.00 2.52
439 449 6.071616 CCGAAAACCCTGAAATAAATCCAGAA 60.072 38.462 0.00 0.00 0.00 3.02
440 450 5.417580 CCGAAAACCCTGAAATAAATCCAGA 59.582 40.000 0.00 0.00 0.00 3.86
441 451 5.650543 CCGAAAACCCTGAAATAAATCCAG 58.349 41.667 0.00 0.00 0.00 3.86
442 452 4.081917 GCCGAAAACCCTGAAATAAATCCA 60.082 41.667 0.00 0.00 0.00 3.41
443 453 4.081917 TGCCGAAAACCCTGAAATAAATCC 60.082 41.667 0.00 0.00 0.00 3.01
444 454 5.066968 TGCCGAAAACCCTGAAATAAATC 57.933 39.130 0.00 0.00 0.00 2.17
445 455 5.476091 TTGCCGAAAACCCTGAAATAAAT 57.524 34.783 0.00 0.00 0.00 1.40
446 456 4.939052 TTGCCGAAAACCCTGAAATAAA 57.061 36.364 0.00 0.00 0.00 1.40
447 457 4.815269 CATTGCCGAAAACCCTGAAATAA 58.185 39.130 0.00 0.00 0.00 1.40
448 458 3.367910 GCATTGCCGAAAACCCTGAAATA 60.368 43.478 0.00 0.00 0.00 1.40
449 459 2.612721 GCATTGCCGAAAACCCTGAAAT 60.613 45.455 0.00 0.00 0.00 2.17
450 460 1.270041 GCATTGCCGAAAACCCTGAAA 60.270 47.619 0.00 0.00 0.00 2.69
451 461 0.316841 GCATTGCCGAAAACCCTGAA 59.683 50.000 0.00 0.00 0.00 3.02
452 462 0.825425 TGCATTGCCGAAAACCCTGA 60.825 50.000 6.12 0.00 0.00 3.86
453 463 0.667184 GTGCATTGCCGAAAACCCTG 60.667 55.000 6.12 0.00 0.00 4.45
454 464 0.827507 AGTGCATTGCCGAAAACCCT 60.828 50.000 6.12 0.00 0.00 4.34
455 465 0.033366 AAGTGCATTGCCGAAAACCC 59.967 50.000 6.12 0.00 0.00 4.11
456 466 1.792367 GAAAGTGCATTGCCGAAAACC 59.208 47.619 6.12 0.00 0.00 3.27
457 467 2.468831 TGAAAGTGCATTGCCGAAAAC 58.531 42.857 6.12 0.00 0.00 2.43
458 468 2.741612 CTGAAAGTGCATTGCCGAAAA 58.258 42.857 6.12 0.00 0.00 2.29
459 469 2.420628 CTGAAAGTGCATTGCCGAAA 57.579 45.000 6.12 0.00 0.00 3.46
472 482 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
473 483 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
474 484 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
475 485 0.112606 AGAACGTCTCCTCCCACTGA 59.887 55.000 0.00 0.00 0.00 3.41
476 486 0.528470 GAGAACGTCTCCTCCCACTG 59.472 60.000 0.00 0.00 37.55 3.66
477 487 0.961358 CGAGAACGTCTCCTCCCACT 60.961 60.000 8.73 0.00 40.34 4.00
478 488 1.507174 CGAGAACGTCTCCTCCCAC 59.493 63.158 8.73 0.00 40.34 4.61
479 489 3.998156 CGAGAACGTCTCCTCCCA 58.002 61.111 8.73 0.00 40.34 4.37
498 508 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
499 509 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
512 522 7.246311 TCTTAAGATTTACGAAGTCACCGTAG 58.754 38.462 0.00 0.00 43.93 3.51
513 523 7.144722 TCTTAAGATTTACGAAGTCACCGTA 57.855 36.000 0.00 0.00 43.93 4.02
514 524 6.017400 TCTTAAGATTTACGAAGTCACCGT 57.983 37.500 0.00 0.00 43.93 4.83
515 525 6.750501 TCATCTTAAGATTTACGAAGTCACCG 59.249 38.462 15.49 0.00 35.39 4.94
516 526 8.649973 ATCATCTTAAGATTTACGAAGTCACC 57.350 34.615 15.49 0.00 35.39 4.02
520 530 9.209175 GGCATATCATCTTAAGATTTACGAAGT 57.791 33.333 15.49 0.00 37.29 3.01
521 531 8.376203 CGGCATATCATCTTAAGATTTACGAAG 58.624 37.037 15.49 3.04 31.21 3.79
522 532 7.330946 CCGGCATATCATCTTAAGATTTACGAA 59.669 37.037 15.49 0.00 31.21 3.85
523 533 6.811665 CCGGCATATCATCTTAAGATTTACGA 59.188 38.462 15.49 10.07 31.21 3.43
524 534 6.455646 GCCGGCATATCATCTTAAGATTTACG 60.456 42.308 24.80 12.15 31.21 3.18
525 535 6.595716 AGCCGGCATATCATCTTAAGATTTAC 59.404 38.462 31.54 2.79 31.21 2.01
526 536 6.711277 AGCCGGCATATCATCTTAAGATTTA 58.289 36.000 31.54 10.60 31.21 1.40
527 537 5.564550 AGCCGGCATATCATCTTAAGATTT 58.435 37.500 31.54 8.78 31.21 2.17
528 538 5.171339 AGCCGGCATATCATCTTAAGATT 57.829 39.130 31.54 5.12 31.21 2.40
529 539 4.223700 TGAGCCGGCATATCATCTTAAGAT 59.776 41.667 31.54 12.37 34.56 2.40
530 540 3.578282 TGAGCCGGCATATCATCTTAAGA 59.422 43.478 31.54 7.82 0.00 2.10
531 541 3.930336 TGAGCCGGCATATCATCTTAAG 58.070 45.455 31.54 0.00 0.00 1.85
532 542 3.324846 ACTGAGCCGGCATATCATCTTAA 59.675 43.478 31.54 0.00 0.00 1.85
533 543 2.899900 ACTGAGCCGGCATATCATCTTA 59.100 45.455 31.54 0.00 0.00 2.10
534 544 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
535 545 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
536 546 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
537 547 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
538 548 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
539 549 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
540 550 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
541 551 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
542 552 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
543 553 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
544 554 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
545 555 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
546 556 2.477176 CCTCCGAGAGACTGAGCCG 61.477 68.421 0.00 0.00 0.00 5.52
547 557 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
548 558 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
549 559 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
550 560 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
551 561 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
552 562 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
553 563 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
554 564 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
555 565 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
556 566 0.468214 CCCTATGAGCACCTCCGAGA 60.468 60.000 0.00 0.00 0.00 4.04
557 567 1.467678 CCCCTATGAGCACCTCCGAG 61.468 65.000 0.00 0.00 0.00 4.63
558 568 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
559 569 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
560 570 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
561 571 1.133136 TCCTACCCCTATGAGCACCTC 60.133 57.143 0.00 0.00 0.00 3.85
562 572 0.941963 TCCTACCCCTATGAGCACCT 59.058 55.000 0.00 0.00 0.00 4.00
563 573 1.625818 CATCCTACCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
564 574 2.037772 CACATCCTACCCCTATGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
565 575 2.329267 CACATCCTACCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
566 576 1.002544 GCACATCCTACCCCTATGAGC 59.997 57.143 0.00 0.00 31.75 4.26
567 577 1.273606 CGCACATCCTACCCCTATGAG 59.726 57.143 0.00 0.00 0.00 2.90
568 578 1.338107 CGCACATCCTACCCCTATGA 58.662 55.000 0.00 0.00 0.00 2.15
569 579 1.048601 ACGCACATCCTACCCCTATG 58.951 55.000 0.00 0.00 0.00 2.23
570 580 1.048601 CACGCACATCCTACCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
571 581 0.324923 ACACGCACATCCTACCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
572 582 1.612442 ACACGCACATCCTACCCCT 60.612 57.895 0.00 0.00 0.00 4.79
573 583 1.449601 CACACGCACATCCTACCCC 60.450 63.158 0.00 0.00 0.00 4.95
574 584 1.019278 CACACACGCACATCCTACCC 61.019 60.000 0.00 0.00 0.00 3.69
575 585 1.635663 GCACACACGCACATCCTACC 61.636 60.000 0.00 0.00 0.00 3.18
576 586 1.787847 GCACACACGCACATCCTAC 59.212 57.895 0.00 0.00 0.00 3.18
577 587 1.736282 CGCACACACGCACATCCTA 60.736 57.895 0.00 0.00 0.00 2.94
578 588 3.043713 CGCACACACGCACATCCT 61.044 61.111 0.00 0.00 0.00 3.24
579 589 2.764251 GAACGCACACACGCACATCC 62.764 60.000 0.00 0.00 36.19 3.51
580 590 1.438710 GAACGCACACACGCACATC 60.439 57.895 0.00 0.00 36.19 3.06
581 591 1.506309 ATGAACGCACACACGCACAT 61.506 50.000 0.00 0.00 36.19 3.21
582 592 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
583 593 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
584 594 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
585 595 1.011968 TCCTATGAACGCACACACGC 61.012 55.000 0.00 0.00 36.19 5.34
586 596 1.424403 TTCCTATGAACGCACACACG 58.576 50.000 0.00 0.00 39.50 4.49
587 597 3.000041 TCATTCCTATGAACGCACACAC 59.000 45.455 0.00 0.00 37.83 3.82
588 598 3.261580 CTCATTCCTATGAACGCACACA 58.738 45.455 0.00 0.00 40.17 3.72
589 599 3.062639 CACTCATTCCTATGAACGCACAC 59.937 47.826 0.00 0.00 40.17 3.82
590 600 3.261580 CACTCATTCCTATGAACGCACA 58.738 45.455 0.00 0.00 40.17 4.57
591 601 3.262420 ACACTCATTCCTATGAACGCAC 58.738 45.455 0.00 0.00 40.17 5.34
592 602 3.610040 ACACTCATTCCTATGAACGCA 57.390 42.857 0.00 0.00 40.17 5.24
593 603 4.084328 GCATACACTCATTCCTATGAACGC 60.084 45.833 0.00 0.00 40.17 4.84
594 604 4.148871 CGCATACACTCATTCCTATGAACG 59.851 45.833 0.00 0.00 40.17 3.95
595 605 4.084328 GCGCATACACTCATTCCTATGAAC 60.084 45.833 0.30 0.00 40.17 3.18
596 606 4.058124 GCGCATACACTCATTCCTATGAA 58.942 43.478 0.30 0.00 40.17 2.57
597 607 3.653344 GCGCATACACTCATTCCTATGA 58.347 45.455 0.30 0.00 38.45 2.15
598 608 2.409715 CGCGCATACACTCATTCCTATG 59.590 50.000 8.75 0.00 0.00 2.23
599 609 2.035961 ACGCGCATACACTCATTCCTAT 59.964 45.455 5.73 0.00 0.00 2.57
600 610 1.407618 ACGCGCATACACTCATTCCTA 59.592 47.619 5.73 0.00 0.00 2.94
601 611 0.175760 ACGCGCATACACTCATTCCT 59.824 50.000 5.73 0.00 0.00 3.36
602 612 0.301687 CACGCGCATACACTCATTCC 59.698 55.000 5.73 0.00 0.00 3.01
603 613 0.999406 ACACGCGCATACACTCATTC 59.001 50.000 5.73 0.00 0.00 2.67
604 614 2.287393 TACACGCGCATACACTCATT 57.713 45.000 5.73 0.00 0.00 2.57
605 615 2.509052 ATACACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
606 616 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
607 617 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
608 618 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
609 619 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
610 620 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
611 621 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
612 622 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
613 623 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
614 624 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
618 628 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
619 629 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
620 630 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
621 631 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
622 632 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
623 633 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
624 634 3.801114 ATACAGACACAAGCGCTCATA 57.199 42.857 12.06 0.00 0.00 2.15
625 635 2.674852 CAATACAGACACAAGCGCTCAT 59.325 45.455 12.06 0.00 0.00 2.90
626 636 2.068519 CAATACAGACACAAGCGCTCA 58.931 47.619 12.06 0.00 0.00 4.26
627 637 2.337583 TCAATACAGACACAAGCGCTC 58.662 47.619 12.06 0.00 0.00 5.03
628 638 2.455674 TCAATACAGACACAAGCGCT 57.544 45.000 2.64 2.64 0.00 5.92
629 639 2.789092 GCATCAATACAGACACAAGCGC 60.789 50.000 0.00 0.00 0.00 5.92
630 640 2.674852 AGCATCAATACAGACACAAGCG 59.325 45.455 0.00 0.00 0.00 4.68
631 641 5.801350 TTAGCATCAATACAGACACAAGC 57.199 39.130 0.00 0.00 0.00 4.01
655 665 7.774134 ACTAAATAAACCGTGTGTTCCTTTTT 58.226 30.769 0.00 0.00 35.67 1.94
656 666 7.337480 ACTAAATAAACCGTGTGTTCCTTTT 57.663 32.000 0.00 0.00 35.67 2.27
657 667 6.293027 CGACTAAATAAACCGTGTGTTCCTTT 60.293 38.462 0.00 0.00 35.67 3.11
658 668 5.178067 CGACTAAATAAACCGTGTGTTCCTT 59.822 40.000 0.00 0.00 35.67 3.36
659 669 4.687483 CGACTAAATAAACCGTGTGTTCCT 59.313 41.667 0.00 0.00 35.67 3.36
660 670 4.143052 CCGACTAAATAAACCGTGTGTTCC 60.143 45.833 0.00 0.00 35.67 3.62
661 671 4.685628 TCCGACTAAATAAACCGTGTGTTC 59.314 41.667 0.00 0.00 35.67 3.18
662 672 4.630111 TCCGACTAAATAAACCGTGTGTT 58.370 39.130 0.00 0.00 39.43 3.32
663 673 4.255833 TCCGACTAAATAAACCGTGTGT 57.744 40.909 0.00 0.00 0.00 3.72
664 674 4.628333 ACATCCGACTAAATAAACCGTGTG 59.372 41.667 0.00 0.00 0.00 3.82
665 675 4.824289 ACATCCGACTAAATAAACCGTGT 58.176 39.130 0.00 0.00 0.00 4.49
666 676 5.446741 CCAACATCCGACTAAATAAACCGTG 60.447 44.000 0.00 0.00 0.00 4.94
679 689 4.124851 ACTGAAGATACCAACATCCGAC 57.875 45.455 0.00 0.00 0.00 4.79
681 691 4.503910 TGAACTGAAGATACCAACATCCG 58.496 43.478 0.00 0.00 0.00 4.18
685 695 8.006298 ACAATTTTGAACTGAAGATACCAACA 57.994 30.769 0.00 0.00 0.00 3.33
699 1401 9.885934 AACACCAAAACTTAAACAATTTTGAAC 57.114 25.926 9.61 0.00 43.07 3.18
702 1404 9.884465 TTGAACACCAAAACTTAAACAATTTTG 57.116 25.926 0.00 0.00 41.10 2.44
775 2593 8.738645 ACCAGTGAGGAAATCTAAATTCATAC 57.261 34.615 0.00 0.00 41.22 2.39
858 2676 3.725459 CAGCATGCACGTGCCGAA 61.725 61.111 35.72 19.66 46.19 4.30
1064 2900 3.948719 TGGGGAAGAAAGCCGCGT 61.949 61.111 4.92 0.00 40.91 6.01
1066 2902 3.431725 CGTGGGGAAGAAAGCCGC 61.432 66.667 0.00 0.00 38.71 6.53
1067 2903 3.431725 GCGTGGGGAAGAAAGCCG 61.432 66.667 0.00 0.00 0.00 5.52
1072 2908 1.748493 GCATATTTGCGTGGGGAAGAA 59.252 47.619 0.00 0.00 39.49 2.52
1107 2943 0.973632 TCGCACACCTAGTTGGATGT 59.026 50.000 0.00 0.00 39.71 3.06
1223 3066 2.490509 TGTCCTCGAAATTAGCTGTCGA 59.509 45.455 0.00 4.99 41.22 4.20
1395 3238 3.388703 GAGAGGCCAGCTGCAGAGG 62.389 68.421 20.43 19.20 43.89 3.69
1480 3335 2.027605 CACACCAGCACGTCGTCT 59.972 61.111 0.00 0.00 0.00 4.18
2032 3993 2.281484 TGCTCAAACAGGTCGGCC 60.281 61.111 0.00 0.00 0.00 6.13
2332 4315 4.081142 GGGGTGAAATTTTTGGTAGATGGG 60.081 45.833 0.00 0.00 0.00 4.00
2345 4328 9.816787 TTTAGTAGATACTTTTGGGGTGAAATT 57.183 29.630 0.00 0.00 37.73 1.82
2346 4329 9.990868 ATTTAGTAGATACTTTTGGGGTGAAAT 57.009 29.630 0.00 0.00 37.73 2.17
2395 4378 4.524802 TGTGATTCATGGCCTTAGGATT 57.475 40.909 3.32 0.00 0.00 3.01
2396 4379 4.467769 CTTGTGATTCATGGCCTTAGGAT 58.532 43.478 3.32 0.00 0.00 3.24
2397 4380 3.889815 CTTGTGATTCATGGCCTTAGGA 58.110 45.455 3.32 0.00 0.00 2.94
2398 4381 2.360165 GCTTGTGATTCATGGCCTTAGG 59.640 50.000 3.32 0.00 0.00 2.69
2399 4382 3.018856 TGCTTGTGATTCATGGCCTTAG 58.981 45.455 3.32 0.00 0.00 2.18
2436 4419 8.007405 TCTACCAGATTCTTTTATGACGATCA 57.993 34.615 0.00 0.00 0.00 2.92
2475 4458 6.820152 ACAAAATCATCTAGGGTACGTTTACC 59.180 38.462 0.00 0.00 46.63 2.85
2490 4473 6.017400 ACCATCACTTCACACAAAATCATC 57.983 37.500 0.00 0.00 0.00 2.92
2523 4538 4.877823 AGAGAAATGCATACATTCGCTCAA 59.122 37.500 17.22 0.00 45.90 3.02
2531 4546 6.985117 ACACACAAAAGAGAAATGCATACAT 58.015 32.000 0.00 0.00 38.49 2.29
2631 4646 8.514594 GGCACATAAATAGATTGCAGCTAATTA 58.485 33.333 7.99 7.99 34.76 1.40
2632 4647 7.232127 AGGCACATAAATAGATTGCAGCTAATT 59.768 33.333 0.00 4.04 34.76 1.40
2633 4648 6.718454 AGGCACATAAATAGATTGCAGCTAAT 59.282 34.615 0.00 0.00 34.76 1.73
2634 4649 6.064060 AGGCACATAAATAGATTGCAGCTAA 58.936 36.000 0.00 0.00 34.76 3.09
2635 4650 5.624159 AGGCACATAAATAGATTGCAGCTA 58.376 37.500 0.00 1.48 34.76 3.32
2636 4651 4.467769 AGGCACATAAATAGATTGCAGCT 58.532 39.130 0.00 0.00 34.76 4.24
2637 4652 4.843220 AGGCACATAAATAGATTGCAGC 57.157 40.909 0.00 0.00 34.76 5.25
2638 4653 6.474427 CACAAAGGCACATAAATAGATTGCAG 59.526 38.462 0.00 0.00 34.76 4.41
2639 4654 6.071447 ACACAAAGGCACATAAATAGATTGCA 60.071 34.615 0.00 0.00 34.76 4.08
2640 4655 6.332630 ACACAAAGGCACATAAATAGATTGC 58.667 36.000 0.00 0.00 0.00 3.56
2641 4656 7.276218 CCAACACAAAGGCACATAAATAGATTG 59.724 37.037 0.00 0.00 0.00 2.67
2642 4657 7.039082 ACCAACACAAAGGCACATAAATAGATT 60.039 33.333 0.00 0.00 0.00 2.40
2643 4658 6.437162 ACCAACACAAAGGCACATAAATAGAT 59.563 34.615 0.00 0.00 0.00 1.98
2644 4659 5.772672 ACCAACACAAAGGCACATAAATAGA 59.227 36.000 0.00 0.00 0.00 1.98
2645 4660 6.024552 ACCAACACAAAGGCACATAAATAG 57.975 37.500 0.00 0.00 0.00 1.73
2646 4661 6.412362 AACCAACACAAAGGCACATAAATA 57.588 33.333 0.00 0.00 0.00 1.40
2647 4662 4.953940 ACCAACACAAAGGCACATAAAT 57.046 36.364 0.00 0.00 0.00 1.40
2648 4663 4.744795 AACCAACACAAAGGCACATAAA 57.255 36.364 0.00 0.00 0.00 1.40
2649 4664 4.437239 CAAACCAACACAAAGGCACATAA 58.563 39.130 0.00 0.00 0.00 1.90
2650 4665 3.739519 GCAAACCAACACAAAGGCACATA 60.740 43.478 0.00 0.00 0.00 2.29
2651 4666 2.903798 CAAACCAACACAAAGGCACAT 58.096 42.857 0.00 0.00 0.00 3.21
2652 4667 1.674221 GCAAACCAACACAAAGGCACA 60.674 47.619 0.00 0.00 0.00 4.57
2653 4668 1.006086 GCAAACCAACACAAAGGCAC 58.994 50.000 0.00 0.00 0.00 5.01
2654 4669 0.901124 AGCAAACCAACACAAAGGCA 59.099 45.000 0.00 0.00 0.00 4.75
2655 4670 2.880963 TAGCAAACCAACACAAAGGC 57.119 45.000 0.00 0.00 0.00 4.35
2657 4672 3.798337 CAGCTTAGCAAACCAACACAAAG 59.202 43.478 7.07 0.00 0.00 2.77
2700 4716 6.720288 GCTTCTAGGTGATGTACTATCCCTAA 59.280 42.308 15.16 8.75 0.00 2.69
2701 4717 6.045695 AGCTTCTAGGTGATGTACTATCCCTA 59.954 42.308 14.39 14.39 0.00 3.53
2702 4718 5.081032 GCTTCTAGGTGATGTACTATCCCT 58.919 45.833 13.96 13.96 0.00 4.20
2714 4730 1.135489 CACGCGTTAGCTTCTAGGTGA 60.135 52.381 10.22 0.00 42.32 4.02
2717 4733 0.179134 AGCACGCGTTAGCTTCTAGG 60.179 55.000 17.41 0.00 38.01 3.02
2746 4762 4.712873 GAACGGCGCGGTGAAACG 62.713 66.667 22.01 9.97 38.12 3.60
2747 4763 2.759519 GAAGAACGGCGCGGTGAAAC 62.760 60.000 22.01 12.84 0.00 2.78
2748 4764 2.589442 AAGAACGGCGCGGTGAAA 60.589 55.556 22.01 0.00 0.00 2.69
2749 4765 3.039588 GAAGAACGGCGCGGTGAA 61.040 61.111 22.01 0.00 0.00 3.18
2750 4766 4.287781 TGAAGAACGGCGCGGTGA 62.288 61.111 22.01 0.93 0.00 4.02
2751 4767 4.072088 GTGAAGAACGGCGCGGTG 62.072 66.667 22.01 6.36 0.00 4.94
2752 4768 3.802418 AAGTGAAGAACGGCGCGGT 62.802 57.895 15.60 15.60 0.00 5.68
2753 4769 3.041940 AAGTGAAGAACGGCGCGG 61.042 61.111 14.03 14.03 0.00 6.46
2760 4776 7.923414 ATAGTTAATCCCACAAGTGAAGAAC 57.077 36.000 0.94 0.00 0.00 3.01
2814 4830 9.722056 CATCCGTAATAATCTTTTGGAGAAAAG 57.278 33.333 0.00 0.00 46.56 2.27
2815 4831 8.682710 CCATCCGTAATAATCTTTTGGAGAAAA 58.317 33.333 0.00 0.00 38.06 2.29
2816 4832 7.832187 ACCATCCGTAATAATCTTTTGGAGAAA 59.168 33.333 0.00 0.00 38.06 2.52
2817 4833 7.343357 ACCATCCGTAATAATCTTTTGGAGAA 58.657 34.615 0.00 0.00 38.06 2.87
2818 4834 6.895782 ACCATCCGTAATAATCTTTTGGAGA 58.104 36.000 0.00 0.00 39.13 3.71
2819 4835 7.067008 ACAACCATCCGTAATAATCTTTTGGAG 59.933 37.037 0.00 0.00 0.00 3.86
2820 4836 6.887545 ACAACCATCCGTAATAATCTTTTGGA 59.112 34.615 0.00 0.00 0.00 3.53
2821 4837 7.095695 ACAACCATCCGTAATAATCTTTTGG 57.904 36.000 0.00 0.00 0.00 3.28
2825 4841 7.931578 TGAAACAACCATCCGTAATAATCTT 57.068 32.000 0.00 0.00 0.00 2.40
2834 4850 5.017294 ACAAAAATGAAACAACCATCCGT 57.983 34.783 0.00 0.00 0.00 4.69
2836 4852 9.271828 AGATAAACAAAAATGAAACAACCATCC 57.728 29.630 0.00 0.00 0.00 3.51
2854 4989 3.053693 ACCCAAGCCAGCATAGATAAACA 60.054 43.478 0.00 0.00 0.00 2.83
2933 5068 9.820725 CTCTTCTCTCAGAACAAATATCATCTT 57.179 33.333 0.00 0.00 29.89 2.40
2972 5107 1.754226 GGCAGACACCAAGACCAAAAA 59.246 47.619 0.00 0.00 0.00 1.94
2995 5158 0.321671 AGGGACTCACACAATCACCG 59.678 55.000 0.00 0.00 0.00 4.94
3010 5173 3.006967 GCGGAATAAGAGCTCATAAGGGA 59.993 47.826 17.77 0.00 0.00 4.20
3016 5179 2.159099 TCAACGCGGAATAAGAGCTCAT 60.159 45.455 17.77 6.59 0.00 2.90
3031 5194 3.405170 ACGATTCCATGATTTCAACGC 57.595 42.857 0.00 0.00 0.00 4.84
3057 5220 3.129502 CGGCCCATGTGAGTGCTG 61.130 66.667 0.00 0.00 0.00 4.41
3059 5222 3.127533 GTCGGCCCATGTGAGTGC 61.128 66.667 0.00 0.00 0.00 4.40
3075 5238 1.145598 CGAGGCAGAGCATCATGGT 59.854 57.895 4.51 0.00 39.45 3.55
3102 5265 2.355837 GTGACCGAACAGCGAGCA 60.356 61.111 0.00 0.00 44.57 4.26
3107 5270 1.508632 TAAGCAAGTGACCGAACAGC 58.491 50.000 0.00 0.00 0.00 4.40
3108 5271 3.131396 AGTTAAGCAAGTGACCGAACAG 58.869 45.455 0.00 0.00 0.00 3.16
3120 5283 4.282496 TCAAGTGGGGAAAAGTTAAGCAA 58.718 39.130 0.00 0.00 0.00 3.91
3122 5285 5.468540 AATCAAGTGGGGAAAAGTTAAGC 57.531 39.130 0.00 0.00 0.00 3.09
3142 5313 4.911390 AGCTGGTTGAGTTAGCAGTAAAT 58.089 39.130 0.00 0.00 43.69 1.40
3145 5316 4.087182 AGTAGCTGGTTGAGTTAGCAGTA 58.913 43.478 0.00 0.00 43.69 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.