Multiple sequence alignment - TraesCS5B01G235700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G235700 chr5B 100.000 3489 0 0 1 3489 416161809 416158321 0.000000e+00 6444.0
1 TraesCS5B01G235700 chr5D 93.427 2845 108 28 688 3489 353077569 353074761 0.000000e+00 4145.0
2 TraesCS5B01G235700 chr5D 83.178 107 13 5 586 691 353077483 353077381 3.710000e-15 93.5
3 TraesCS5B01G235700 chr5A 90.228 2855 165 40 688 3484 452686759 452689557 0.000000e+00 3622.0
4 TraesCS5B01G235700 chr5A 92.623 122 4 4 1 120 585551999 585551881 1.670000e-38 171.0
5 TraesCS5B01G235700 chr5A 86.916 107 9 5 586 691 452686844 452686946 7.910000e-22 115.0
6 TraesCS5B01G235700 chr6A 88.931 524 34 14 1648 2171 555421086 555420587 2.960000e-175 625.0
7 TraesCS5B01G235700 chr6A 91.935 124 5 4 1 122 560887624 560887504 5.990000e-38 169.0
8 TraesCS5B01G235700 chr6A 91.406 128 3 6 1 125 564862697 564862575 5.990000e-38 169.0
9 TraesCS5B01G235700 chr3A 89.958 478 45 1 1511 1988 12434043 12434517 6.400000e-172 614.0
10 TraesCS5B01G235700 chr3A 86.343 432 49 7 117 546 550470857 550470434 2.450000e-126 462.0
11 TraesCS5B01G235700 chr1B 87.185 437 47 7 117 551 671544337 671543908 4.050000e-134 488.0
12 TraesCS5B01G235700 chr1B 100.000 33 0 0 1561 1593 328649739 328649771 1.050000e-05 62.1
13 TraesCS5B01G235700 chr4B 86.353 425 49 5 117 541 618630399 618629984 4.110000e-124 455.0
14 TraesCS5B01G235700 chr4B 85.882 425 51 5 117 541 618637172 618636757 8.890000e-121 444.0
15 TraesCS5B01G235700 chr4B 95.699 93 4 0 1511 1603 429345446 429345354 2.170000e-32 150.0
16 TraesCS5B01G235700 chr2D 85.880 432 50 8 117 547 279048804 279049225 1.910000e-122 449.0
17 TraesCS5B01G235700 chr2D 83.982 437 59 7 117 549 176561000 176560571 3.240000e-110 409.0
18 TraesCS5B01G235700 chrUn 85.882 425 51 5 117 541 332622267 332621852 8.890000e-121 444.0
19 TraesCS5B01G235700 chr1A 85.068 442 58 4 117 557 13970021 13969587 8.890000e-121 444.0
20 TraesCS5B01G235700 chr7D 84.527 433 55 6 119 547 558090275 558090699 5.390000e-113 418.0
21 TraesCS5B01G235700 chr2B 94.262 122 5 2 1 121 180653946 180653826 5.950000e-43 185.0
22 TraesCS5B01G235700 chr2B 94.017 117 4 3 2 117 490904692 490904578 1.290000e-39 174.0
23 TraesCS5B01G235700 chr7A 92.623 122 5 4 1 120 292854533 292854414 4.630000e-39 172.0
24 TraesCS5B01G235700 chr3B 93.277 119 4 3 1 117 125950365 125950481 4.630000e-39 172.0
25 TraesCS5B01G235700 chr3B 92.562 121 5 3 1 120 481654450 481654333 1.670000e-38 171.0
26 TraesCS5B01G235700 chr3B 91.339 127 6 4 1 126 705134851 705134973 5.990000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G235700 chr5B 416158321 416161809 3488 True 6444.00 6444 100.0000 1 3489 1 chr5B.!!$R1 3488
1 TraesCS5B01G235700 chr5D 353074761 353077569 2808 True 2119.25 4145 88.3025 586 3489 2 chr5D.!!$R1 2903
2 TraesCS5B01G235700 chr5A 452686759 452689557 2798 False 1868.50 3622 88.5720 586 3484 2 chr5A.!!$F1 2898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 610 0.030101 CCGATCAGCGTCTCCTCTTC 59.970 60.0 0.0 0.0 38.67 2.87 F
652 653 0.319125 GCCTGTAGCGTCCTCTATGC 60.319 60.0 0.0 0.0 40.71 3.14 F
701 702 0.606096 AACGCCCAGTAAATTTGGCC 59.394 50.0 10.7 0.0 40.87 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1715 1732 1.379044 GAAGGACGACTCCCGGGTA 60.379 63.158 22.86 6.41 43.93 3.69 R
2432 2457 1.464608 CACACGAAGTAACATGGCCTG 59.535 52.381 3.32 2.01 41.61 4.85 R
2585 2621 5.001232 TGCACACAGGAAAAAGATACTACC 58.999 41.667 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.564854 CTTGTGCTAAATTGCTAAATCTGC 57.435 37.500 0.00 0.00 0.00 4.26
24 25 5.641783 TGTGCTAAATTGCTAAATCTGCA 57.358 34.783 0.00 0.00 38.80 4.41
37 38 9.762933 TTGCTAAATCTGCAAAGAACTAAAATT 57.237 25.926 0.00 0.00 45.81 1.82
38 39 9.195411 TGCTAAATCTGCAAAGAACTAAAATTG 57.805 29.630 0.00 0.00 37.51 2.32
39 40 8.650714 GCTAAATCTGCAAAGAACTAAAATTGG 58.349 33.333 0.00 0.00 0.00 3.16
40 41 9.912634 CTAAATCTGCAAAGAACTAAAATTGGA 57.087 29.630 0.00 0.00 0.00 3.53
42 43 9.612066 AAATCTGCAAAGAACTAAAATTGGAAA 57.388 25.926 0.00 0.00 0.00 3.13
43 44 9.612066 AATCTGCAAAGAACTAAAATTGGAAAA 57.388 25.926 0.00 0.00 0.00 2.29
44 45 9.612066 ATCTGCAAAGAACTAAAATTGGAAAAA 57.388 25.926 0.00 0.00 0.00 1.94
81 82 9.444600 TTTATTTGGTCAAGTAGTCTAATCACC 57.555 33.333 2.72 2.72 0.00 4.02
82 83 5.416271 TTGGTCAAGTAGTCTAATCACCC 57.584 43.478 6.13 0.00 0.00 4.61
83 84 3.773119 TGGTCAAGTAGTCTAATCACCCC 59.227 47.826 6.13 0.00 0.00 4.95
84 85 3.134262 GGTCAAGTAGTCTAATCACCCCC 59.866 52.174 0.00 0.00 0.00 5.40
108 109 4.323553 CCCCCTTCTAGACATACTTTCG 57.676 50.000 0.00 0.00 0.00 3.46
109 110 3.958798 CCCCCTTCTAGACATACTTTCGA 59.041 47.826 0.00 0.00 0.00 3.71
110 111 4.589374 CCCCCTTCTAGACATACTTTCGAT 59.411 45.833 0.00 0.00 0.00 3.59
111 112 5.279056 CCCCCTTCTAGACATACTTTCGATC 60.279 48.000 0.00 0.00 0.00 3.69
112 113 5.279056 CCCCTTCTAGACATACTTTCGATCC 60.279 48.000 0.00 0.00 0.00 3.36
113 114 5.302059 CCCTTCTAGACATACTTTCGATCCA 59.698 44.000 0.00 0.00 0.00 3.41
114 115 6.183360 CCCTTCTAGACATACTTTCGATCCAA 60.183 42.308 0.00 0.00 0.00 3.53
115 116 6.697892 CCTTCTAGACATACTTTCGATCCAAC 59.302 42.308 0.00 0.00 0.00 3.77
116 117 6.769134 TCTAGACATACTTTCGATCCAACA 57.231 37.500 0.00 0.00 0.00 3.33
117 118 6.796426 TCTAGACATACTTTCGATCCAACAG 58.204 40.000 0.00 0.00 0.00 3.16
118 119 4.184629 AGACATACTTTCGATCCAACAGC 58.815 43.478 0.00 0.00 0.00 4.40
119 120 4.081420 AGACATACTTTCGATCCAACAGCT 60.081 41.667 0.00 0.00 0.00 4.24
120 121 5.127194 AGACATACTTTCGATCCAACAGCTA 59.873 40.000 0.00 0.00 0.00 3.32
121 122 5.918608 ACATACTTTCGATCCAACAGCTAT 58.081 37.500 0.00 0.00 0.00 2.97
122 123 5.755375 ACATACTTTCGATCCAACAGCTATG 59.245 40.000 0.00 0.00 0.00 2.23
123 124 4.207891 ACTTTCGATCCAACAGCTATGT 57.792 40.909 0.00 0.00 43.15 2.29
142 143 4.508461 TGTTTCTGAAACATGCCTCATG 57.492 40.909 27.14 5.35 45.79 3.07
143 144 3.248266 GTTTCTGAAACATGCCTCATGC 58.752 45.455 24.32 0.00 44.80 4.06
144 145 5.766960 TGTTTCTGAAACATGCCTCATGCA 61.767 41.667 27.14 4.99 46.53 3.96
154 155 2.776312 GCCTCATGCATCAATGTCTG 57.224 50.000 0.00 0.00 40.77 3.51
155 156 2.294979 GCCTCATGCATCAATGTCTGA 58.705 47.619 0.00 0.00 40.77 3.27
156 157 2.033049 GCCTCATGCATCAATGTCTGAC 59.967 50.000 0.00 0.00 40.77 3.51
157 158 2.617308 CCTCATGCATCAATGTCTGACC 59.383 50.000 5.17 0.00 36.69 4.02
158 159 3.275999 CTCATGCATCAATGTCTGACCA 58.724 45.455 5.17 0.00 36.69 4.02
159 160 3.011818 TCATGCATCAATGTCTGACCAC 58.988 45.455 5.17 0.00 36.69 4.16
160 161 2.865119 TGCATCAATGTCTGACCACT 57.135 45.000 5.17 0.00 36.69 4.00
161 162 2.703416 TGCATCAATGTCTGACCACTC 58.297 47.619 5.17 0.00 36.69 3.51
162 163 2.038820 TGCATCAATGTCTGACCACTCA 59.961 45.455 5.17 0.00 36.69 3.41
163 164 2.417933 GCATCAATGTCTGACCACTCAC 59.582 50.000 5.17 0.00 36.69 3.51
164 165 3.867600 GCATCAATGTCTGACCACTCACT 60.868 47.826 5.17 0.00 36.69 3.41
165 166 3.667497 TCAATGTCTGACCACTCACTC 57.333 47.619 5.17 0.00 0.00 3.51
166 167 3.234353 TCAATGTCTGACCACTCACTCT 58.766 45.455 5.17 0.00 0.00 3.24
167 168 3.256879 TCAATGTCTGACCACTCACTCTC 59.743 47.826 5.17 0.00 0.00 3.20
168 169 2.666272 TGTCTGACCACTCACTCTCT 57.334 50.000 5.17 0.00 0.00 3.10
169 170 3.790089 TGTCTGACCACTCACTCTCTA 57.210 47.619 5.17 0.00 0.00 2.43
170 171 4.100279 TGTCTGACCACTCACTCTCTAA 57.900 45.455 5.17 0.00 0.00 2.10
171 172 3.821600 TGTCTGACCACTCACTCTCTAAC 59.178 47.826 5.17 0.00 0.00 2.34
172 173 3.075148 TCTGACCACTCACTCTCTAACG 58.925 50.000 0.00 0.00 0.00 3.18
173 174 1.540267 TGACCACTCACTCTCTAACGC 59.460 52.381 0.00 0.00 0.00 4.84
174 175 0.889306 ACCACTCACTCTCTAACGCC 59.111 55.000 0.00 0.00 0.00 5.68
175 176 0.179161 CCACTCACTCTCTAACGCCG 60.179 60.000 0.00 0.00 0.00 6.46
176 177 0.179161 CACTCACTCTCTAACGCCGG 60.179 60.000 0.00 0.00 0.00 6.13
177 178 1.313812 ACTCACTCTCTAACGCCGGG 61.314 60.000 2.18 0.00 0.00 5.73
178 179 2.202756 CACTCTCTAACGCCGGGC 60.203 66.667 9.54 9.54 0.00 6.13
205 206 2.507102 GCGCTGCAACTCGAGCTA 60.507 61.111 13.61 0.00 32.70 3.32
206 207 1.880340 GCGCTGCAACTCGAGCTAT 60.880 57.895 13.61 0.00 32.70 2.97
207 208 1.922903 CGCTGCAACTCGAGCTATG 59.077 57.895 13.61 10.61 32.70 2.23
208 209 0.803768 CGCTGCAACTCGAGCTATGT 60.804 55.000 13.61 0.00 32.70 2.29
209 210 1.363744 GCTGCAACTCGAGCTATGTT 58.636 50.000 13.61 0.00 32.12 2.71
210 211 1.734465 GCTGCAACTCGAGCTATGTTT 59.266 47.619 13.61 0.00 32.12 2.83
211 212 2.222908 GCTGCAACTCGAGCTATGTTTC 60.223 50.000 13.61 0.00 32.12 2.78
212 213 3.257393 CTGCAACTCGAGCTATGTTTCT 58.743 45.455 13.61 0.00 0.00 2.52
213 214 2.995939 TGCAACTCGAGCTATGTTTCTG 59.004 45.455 13.61 0.00 0.00 3.02
214 215 3.254060 GCAACTCGAGCTATGTTTCTGA 58.746 45.455 13.61 0.00 0.00 3.27
215 216 3.679980 GCAACTCGAGCTATGTTTCTGAA 59.320 43.478 13.61 0.00 0.00 3.02
216 217 4.152402 GCAACTCGAGCTATGTTTCTGAAA 59.848 41.667 13.61 0.00 0.00 2.69
217 218 5.612865 CAACTCGAGCTATGTTTCTGAAAC 58.387 41.667 22.94 22.94 41.73 2.78
231 232 4.836125 TCTGAAACAAGATCCTTGTTGC 57.164 40.909 21.27 20.02 41.30 4.17
232 233 4.206375 TCTGAAACAAGATCCTTGTTGCA 58.794 39.130 23.99 23.99 43.57 4.08
233 234 4.572985 TGAAACAAGATCCTTGTTGCAG 57.427 40.909 22.57 0.00 41.60 4.41
234 235 4.206375 TGAAACAAGATCCTTGTTGCAGA 58.794 39.130 22.57 7.52 41.60 4.26
235 236 4.644234 TGAAACAAGATCCTTGTTGCAGAA 59.356 37.500 22.57 6.95 41.60 3.02
236 237 5.126869 TGAAACAAGATCCTTGTTGCAGAAA 59.873 36.000 22.57 6.66 41.60 2.52
237 238 5.596836 AACAAGATCCTTGTTGCAGAAAA 57.403 34.783 20.27 0.00 40.70 2.29
238 239 5.596836 ACAAGATCCTTGTTGCAGAAAAA 57.403 34.783 6.53 0.00 29.38 1.94
239 240 5.594926 ACAAGATCCTTGTTGCAGAAAAAG 58.405 37.500 6.53 0.00 29.38 2.27
240 241 5.127682 ACAAGATCCTTGTTGCAGAAAAAGT 59.872 36.000 6.53 0.00 29.38 2.66
241 242 5.444663 AGATCCTTGTTGCAGAAAAAGTC 57.555 39.130 0.00 0.00 0.00 3.01
242 243 4.279420 AGATCCTTGTTGCAGAAAAAGTCC 59.721 41.667 0.00 0.00 0.00 3.85
243 244 3.631250 TCCTTGTTGCAGAAAAAGTCCT 58.369 40.909 0.00 0.00 0.00 3.85
244 245 4.023291 TCCTTGTTGCAGAAAAAGTCCTT 58.977 39.130 0.00 0.00 0.00 3.36
245 246 4.097892 TCCTTGTTGCAGAAAAAGTCCTTC 59.902 41.667 0.00 0.00 0.00 3.46
246 247 4.142182 CCTTGTTGCAGAAAAAGTCCTTCA 60.142 41.667 0.00 0.00 0.00 3.02
247 248 4.370364 TGTTGCAGAAAAAGTCCTTCAC 57.630 40.909 0.00 0.00 0.00 3.18
248 249 3.181501 TGTTGCAGAAAAAGTCCTTCACG 60.182 43.478 0.00 0.00 0.00 4.35
249 250 1.946768 TGCAGAAAAAGTCCTTCACGG 59.053 47.619 0.00 0.00 0.00 4.94
250 251 1.335051 GCAGAAAAAGTCCTTCACGGC 60.335 52.381 0.00 0.00 0.00 5.68
251 252 1.266989 CAGAAAAAGTCCTTCACGGCC 59.733 52.381 0.00 0.00 0.00 6.13
252 253 0.237498 GAAAAAGTCCTTCACGGCCG 59.763 55.000 26.86 26.86 0.00 6.13
253 254 0.179040 AAAAAGTCCTTCACGGCCGA 60.179 50.000 35.90 7.50 0.00 5.54
254 255 0.179040 AAAAGTCCTTCACGGCCGAA 60.179 50.000 35.90 16.42 0.00 4.30
255 256 0.179040 AAAGTCCTTCACGGCCGAAA 60.179 50.000 35.90 23.48 0.00 3.46
256 257 0.036306 AAGTCCTTCACGGCCGAAAT 59.964 50.000 35.90 6.51 0.00 2.17
257 258 0.036306 AGTCCTTCACGGCCGAAATT 59.964 50.000 35.90 6.02 0.00 1.82
258 259 0.879090 GTCCTTCACGGCCGAAATTT 59.121 50.000 35.90 5.52 0.00 1.82
259 260 1.268625 GTCCTTCACGGCCGAAATTTT 59.731 47.619 35.90 4.54 0.00 1.82
260 261 1.957877 TCCTTCACGGCCGAAATTTTT 59.042 42.857 35.90 3.57 0.00 1.94
261 262 2.030628 TCCTTCACGGCCGAAATTTTTC 60.031 45.455 35.90 0.00 0.00 2.29
262 263 2.030274 CCTTCACGGCCGAAATTTTTCT 60.030 45.455 35.90 1.64 35.07 2.52
263 264 3.552068 CCTTCACGGCCGAAATTTTTCTT 60.552 43.478 35.90 0.68 35.07 2.52
264 265 3.719173 TCACGGCCGAAATTTTTCTTT 57.281 38.095 35.90 0.00 35.07 2.52
265 266 4.048241 TCACGGCCGAAATTTTTCTTTT 57.952 36.364 35.90 0.00 35.07 2.27
266 267 4.045783 TCACGGCCGAAATTTTTCTTTTC 58.954 39.130 35.90 0.00 35.07 2.29
267 268 4.048504 CACGGCCGAAATTTTTCTTTTCT 58.951 39.130 35.90 0.00 35.07 2.52
268 269 4.506288 CACGGCCGAAATTTTTCTTTTCTT 59.494 37.500 35.90 0.00 35.07 2.52
269 270 5.006261 CACGGCCGAAATTTTTCTTTTCTTT 59.994 36.000 35.90 0.00 35.07 2.52
270 271 5.233476 ACGGCCGAAATTTTTCTTTTCTTTC 59.767 36.000 35.90 0.00 35.07 2.62
271 272 5.333035 CGGCCGAAATTTTTCTTTTCTTTCC 60.333 40.000 24.07 0.00 35.07 3.13
272 273 5.333035 GGCCGAAATTTTTCTTTTCTTTCCG 60.333 40.000 0.00 0.00 35.07 4.30
273 274 5.460748 GCCGAAATTTTTCTTTTCTTTCCGA 59.539 36.000 0.00 0.00 35.07 4.55
274 275 6.019398 GCCGAAATTTTTCTTTTCTTTCCGAA 60.019 34.615 0.00 0.00 35.07 4.30
275 276 7.464844 GCCGAAATTTTTCTTTTCTTTCCGAAA 60.465 33.333 0.00 0.00 39.76 3.46
276 277 7.844169 CCGAAATTTTTCTTTTCTTTCCGAAAC 59.156 33.333 0.00 0.00 41.13 2.78
277 278 8.376942 CGAAATTTTTCTTTTCTTTCCGAAACA 58.623 29.630 0.00 0.00 41.13 2.83
290 291 8.682128 TCTTTCCGAAACAAAATATATGTTGC 57.318 30.769 14.51 1.11 39.98 4.17
291 292 8.300286 TCTTTCCGAAACAAAATATATGTTGCA 58.700 29.630 14.51 0.00 39.98 4.08
292 293 8.459521 TTTCCGAAACAAAATATATGTTGCAG 57.540 30.769 14.51 4.88 39.98 4.41
293 294 7.384439 TCCGAAACAAAATATATGTTGCAGA 57.616 32.000 14.51 3.39 39.98 4.26
294 295 7.821652 TCCGAAACAAAATATATGTTGCAGAA 58.178 30.769 14.51 0.00 39.98 3.02
295 296 8.300286 TCCGAAACAAAATATATGTTGCAGAAA 58.700 29.630 14.51 0.00 39.98 2.52
296 297 9.086336 CCGAAACAAAATATATGTTGCAGAAAT 57.914 29.630 14.51 0.00 39.98 2.17
308 309 7.846644 ATGTTGCAGAAATCTTTTGAAACAA 57.153 28.000 7.36 0.00 0.00 2.83
309 310 7.293402 TGTTGCAGAAATCTTTTGAAACAAG 57.707 32.000 1.93 0.00 0.00 3.16
310 311 7.095910 TGTTGCAGAAATCTTTTGAAACAAGA 58.904 30.769 1.93 0.00 34.74 3.02
311 312 7.063308 TGTTGCAGAAATCTTTTGAAACAAGAC 59.937 33.333 1.93 0.00 33.04 3.01
312 313 6.042143 TGCAGAAATCTTTTGAAACAAGACC 58.958 36.000 0.00 0.00 33.04 3.85
313 314 5.463392 GCAGAAATCTTTTGAAACAAGACCC 59.537 40.000 0.00 0.00 33.04 4.46
314 315 5.687285 CAGAAATCTTTTGAAACAAGACCCG 59.313 40.000 0.00 0.00 33.04 5.28
315 316 5.592688 AGAAATCTTTTGAAACAAGACCCGA 59.407 36.000 0.00 0.00 33.04 5.14
316 317 5.438761 AATCTTTTGAAACAAGACCCGAG 57.561 39.130 0.00 0.00 33.04 4.63
317 318 3.881220 TCTTTTGAAACAAGACCCGAGT 58.119 40.909 0.00 0.00 0.00 4.18
318 319 4.266714 TCTTTTGAAACAAGACCCGAGTT 58.733 39.130 0.00 0.00 0.00 3.01
319 320 4.095782 TCTTTTGAAACAAGACCCGAGTTG 59.904 41.667 0.00 0.00 0.00 3.16
320 321 1.305201 TGAAACAAGACCCGAGTTGC 58.695 50.000 0.00 0.00 0.00 4.17
321 322 1.305201 GAAACAAGACCCGAGTTGCA 58.695 50.000 0.00 0.00 0.00 4.08
322 323 1.264288 GAAACAAGACCCGAGTTGCAG 59.736 52.381 0.00 0.00 0.00 4.41
323 324 0.468226 AACAAGACCCGAGTTGCAGA 59.532 50.000 0.00 0.00 0.00 4.26
324 325 0.468226 ACAAGACCCGAGTTGCAGAA 59.532 50.000 0.00 0.00 0.00 3.02
325 326 1.134220 ACAAGACCCGAGTTGCAGAAA 60.134 47.619 0.00 0.00 0.00 2.52
326 327 1.946768 CAAGACCCGAGTTGCAGAAAA 59.053 47.619 0.00 0.00 0.00 2.29
327 328 1.884235 AGACCCGAGTTGCAGAAAAG 58.116 50.000 0.00 0.00 0.00 2.27
328 329 1.416401 AGACCCGAGTTGCAGAAAAGA 59.584 47.619 0.00 0.00 0.00 2.52
329 330 2.158813 AGACCCGAGTTGCAGAAAAGAA 60.159 45.455 0.00 0.00 0.00 2.52
330 331 2.616842 GACCCGAGTTGCAGAAAAGAAA 59.383 45.455 0.00 0.00 0.00 2.52
331 332 3.020984 ACCCGAGTTGCAGAAAAGAAAA 58.979 40.909 0.00 0.00 0.00 2.29
332 333 3.445805 ACCCGAGTTGCAGAAAAGAAAAA 59.554 39.130 0.00 0.00 0.00 1.94
333 334 3.796717 CCCGAGTTGCAGAAAAGAAAAAC 59.203 43.478 0.00 0.00 0.00 2.43
334 335 4.440112 CCCGAGTTGCAGAAAAGAAAAACT 60.440 41.667 0.00 0.00 0.00 2.66
335 336 5.102313 CCGAGTTGCAGAAAAGAAAAACTT 58.898 37.500 0.00 0.00 40.98 2.66
336 337 5.230097 CCGAGTTGCAGAAAAGAAAAACTTC 59.770 40.000 0.00 0.00 37.93 3.01
337 338 5.799936 CGAGTTGCAGAAAAGAAAAACTTCA 59.200 36.000 0.00 0.00 37.93 3.02
338 339 6.237306 CGAGTTGCAGAAAAGAAAAACTTCAC 60.237 38.462 0.00 0.00 37.93 3.18
339 340 5.869344 AGTTGCAGAAAAGAAAAACTTCACC 59.131 36.000 0.00 0.00 37.93 4.02
340 341 5.398603 TGCAGAAAAGAAAAACTTCACCA 57.601 34.783 0.00 0.00 37.93 4.17
341 342 5.976458 TGCAGAAAAGAAAAACTTCACCAT 58.024 33.333 0.00 0.00 37.93 3.55
342 343 6.042143 TGCAGAAAAGAAAAACTTCACCATC 58.958 36.000 0.00 0.00 37.93 3.51
343 344 5.173854 GCAGAAAAGAAAAACTTCACCATCG 59.826 40.000 0.00 0.00 37.93 3.84
344 345 6.494842 CAGAAAAGAAAAACTTCACCATCGA 58.505 36.000 0.00 0.00 37.93 3.59
345 346 6.972328 CAGAAAAGAAAAACTTCACCATCGAA 59.028 34.615 0.00 0.00 37.93 3.71
346 347 7.649306 CAGAAAAGAAAAACTTCACCATCGAAT 59.351 33.333 0.00 0.00 37.93 3.34
347 348 7.862873 AGAAAAGAAAAACTTCACCATCGAATC 59.137 33.333 0.00 0.00 37.93 2.52
348 349 6.633500 AAGAAAAACTTCACCATCGAATCA 57.367 33.333 0.00 0.00 32.91 2.57
349 350 6.824305 AGAAAAACTTCACCATCGAATCAT 57.176 33.333 0.00 0.00 0.00 2.45
350 351 7.219484 AGAAAAACTTCACCATCGAATCATT 57.781 32.000 0.00 0.00 0.00 2.57
351 352 7.661040 AGAAAAACTTCACCATCGAATCATTT 58.339 30.769 0.00 0.00 0.00 2.32
352 353 8.143835 AGAAAAACTTCACCATCGAATCATTTT 58.856 29.630 0.00 0.00 0.00 1.82
353 354 8.661352 AAAAACTTCACCATCGAATCATTTTT 57.339 26.923 0.00 0.00 0.00 1.94
380 381 7.958053 TTCTTTCTTTCTAAAACTAGTCCCG 57.042 36.000 0.00 0.00 0.00 5.14
381 382 7.059202 TCTTTCTTTCTAAAACTAGTCCCGT 57.941 36.000 0.00 0.00 0.00 5.28
382 383 8.181904 TCTTTCTTTCTAAAACTAGTCCCGTA 57.818 34.615 0.00 0.00 0.00 4.02
383 384 8.810041 TCTTTCTTTCTAAAACTAGTCCCGTAT 58.190 33.333 0.00 0.00 0.00 3.06
384 385 9.433153 CTTTCTTTCTAAAACTAGTCCCGTATT 57.567 33.333 0.00 0.00 0.00 1.89
385 386 8.767478 TTCTTTCTAAAACTAGTCCCGTATTG 57.233 34.615 0.00 0.00 0.00 1.90
386 387 6.815142 TCTTTCTAAAACTAGTCCCGTATTGC 59.185 38.462 0.00 0.00 0.00 3.56
387 388 5.664294 TCTAAAACTAGTCCCGTATTGCA 57.336 39.130 0.00 0.00 0.00 4.08
388 389 5.657474 TCTAAAACTAGTCCCGTATTGCAG 58.343 41.667 0.00 0.00 0.00 4.41
389 390 4.546829 AAAACTAGTCCCGTATTGCAGA 57.453 40.909 0.00 0.00 0.00 4.26
390 391 4.546829 AAACTAGTCCCGTATTGCAGAA 57.453 40.909 0.00 0.00 0.00 3.02
391 392 4.546829 AACTAGTCCCGTATTGCAGAAA 57.453 40.909 0.00 0.00 0.00 2.52
392 393 4.755266 ACTAGTCCCGTATTGCAGAAAT 57.245 40.909 0.00 0.00 0.00 2.17
393 394 4.694339 ACTAGTCCCGTATTGCAGAAATC 58.306 43.478 0.00 0.00 0.00 2.17
394 395 3.914426 AGTCCCGTATTGCAGAAATCT 57.086 42.857 0.00 0.00 0.00 2.40
395 396 5.597182 ACTAGTCCCGTATTGCAGAAATCTA 59.403 40.000 0.00 0.00 0.00 1.98
396 397 4.950050 AGTCCCGTATTGCAGAAATCTAG 58.050 43.478 0.00 0.00 0.00 2.43
397 398 4.406003 AGTCCCGTATTGCAGAAATCTAGT 59.594 41.667 0.00 0.00 0.00 2.57
398 399 4.508124 GTCCCGTATTGCAGAAATCTAGTG 59.492 45.833 0.00 0.00 0.00 2.74
399 400 4.404394 TCCCGTATTGCAGAAATCTAGTGA 59.596 41.667 0.00 0.00 0.00 3.41
400 401 5.105106 TCCCGTATTGCAGAAATCTAGTGAA 60.105 40.000 0.00 0.00 0.00 3.18
401 402 5.584649 CCCGTATTGCAGAAATCTAGTGAAA 59.415 40.000 0.00 0.00 0.00 2.69
402 403 6.456988 CCCGTATTGCAGAAATCTAGTGAAAC 60.457 42.308 0.00 0.00 0.00 2.78
403 404 6.178507 CGTATTGCAGAAATCTAGTGAAACG 58.821 40.000 0.00 0.00 45.86 3.60
404 405 5.551760 ATTGCAGAAATCTAGTGAAACGG 57.448 39.130 0.00 0.00 45.86 4.44
405 406 3.334691 TGCAGAAATCTAGTGAAACGGG 58.665 45.455 0.00 0.00 45.86 5.28
406 407 3.007506 TGCAGAAATCTAGTGAAACGGGA 59.992 43.478 0.00 0.00 45.86 5.14
407 408 4.192317 GCAGAAATCTAGTGAAACGGGAT 58.808 43.478 0.00 0.00 45.86 3.85
408 409 4.271291 GCAGAAATCTAGTGAAACGGGATC 59.729 45.833 0.00 0.00 45.86 3.36
409 410 4.811557 CAGAAATCTAGTGAAACGGGATCC 59.188 45.833 1.92 1.92 45.86 3.36
410 411 4.717280 AGAAATCTAGTGAAACGGGATCCT 59.283 41.667 12.58 0.00 45.86 3.24
411 412 5.189934 AGAAATCTAGTGAAACGGGATCCTT 59.810 40.000 12.58 0.00 45.86 3.36
412 413 6.383147 AGAAATCTAGTGAAACGGGATCCTTA 59.617 38.462 12.58 0.00 45.86 2.69
413 414 6.749036 AATCTAGTGAAACGGGATCCTTAT 57.251 37.500 12.58 0.00 45.86 1.73
414 415 6.749036 ATCTAGTGAAACGGGATCCTTATT 57.251 37.500 12.58 3.92 45.86 1.40
415 416 5.914033 TCTAGTGAAACGGGATCCTTATTG 58.086 41.667 12.58 0.00 45.86 1.90
416 417 3.279434 AGTGAAACGGGATCCTTATTGC 58.721 45.455 12.58 3.07 45.86 3.56
417 418 3.013921 GTGAAACGGGATCCTTATTGCA 58.986 45.455 12.58 5.77 0.00 4.08
418 419 3.442273 GTGAAACGGGATCCTTATTGCAA 59.558 43.478 12.58 0.00 0.00 4.08
419 420 3.694072 TGAAACGGGATCCTTATTGCAAG 59.306 43.478 12.58 0.00 0.00 4.01
420 421 3.644966 AACGGGATCCTTATTGCAAGA 57.355 42.857 12.58 0.00 0.00 3.02
421 422 3.644966 ACGGGATCCTTATTGCAAGAA 57.355 42.857 12.58 6.31 0.00 2.52
422 423 3.963129 ACGGGATCCTTATTGCAAGAAA 58.037 40.909 12.58 2.55 0.00 2.52
423 424 4.340617 ACGGGATCCTTATTGCAAGAAAA 58.659 39.130 12.58 0.00 0.00 2.29
424 425 4.770010 ACGGGATCCTTATTGCAAGAAAAA 59.230 37.500 12.58 0.00 0.00 1.94
425 426 5.105756 ACGGGATCCTTATTGCAAGAAAAAG 60.106 40.000 12.58 7.20 0.00 2.27
426 427 5.125417 CGGGATCCTTATTGCAAGAAAAAGA 59.875 40.000 12.58 5.74 0.00 2.52
427 428 6.333416 GGGATCCTTATTGCAAGAAAAAGAC 58.667 40.000 12.58 0.00 0.00 3.01
428 429 6.153510 GGGATCCTTATTGCAAGAAAAAGACT 59.846 38.462 12.58 0.00 0.00 3.24
429 430 7.031975 GGATCCTTATTGCAAGAAAAAGACTG 58.968 38.462 8.03 0.00 0.00 3.51
430 431 6.331369 TCCTTATTGCAAGAAAAAGACTGG 57.669 37.500 8.03 4.01 0.00 4.00
431 432 4.925646 CCTTATTGCAAGAAAAAGACTGGC 59.074 41.667 8.03 0.00 35.14 4.85
432 433 2.888834 TTGCAAGAAAAAGACTGGCC 57.111 45.000 0.00 0.00 33.79 5.36
433 434 0.667993 TGCAAGAAAAAGACTGGCCG 59.332 50.000 0.00 0.00 33.79 6.13
434 435 0.668535 GCAAGAAAAAGACTGGCCGT 59.331 50.000 0.00 0.00 0.00 5.68
435 436 1.600413 GCAAGAAAAAGACTGGCCGTG 60.600 52.381 4.94 0.00 0.00 4.94
436 437 1.676006 CAAGAAAAAGACTGGCCGTGT 59.324 47.619 4.94 2.77 0.00 4.49
437 438 1.308998 AGAAAAAGACTGGCCGTGTG 58.691 50.000 5.91 0.00 0.00 3.82
438 439 1.134220 AGAAAAAGACTGGCCGTGTGA 60.134 47.619 5.91 0.00 0.00 3.58
439 440 1.264288 GAAAAAGACTGGCCGTGTGAG 59.736 52.381 5.91 0.00 0.00 3.51
440 441 0.468226 AAAAGACTGGCCGTGTGAGA 59.532 50.000 5.91 0.00 0.00 3.27
441 442 0.249911 AAAGACTGGCCGTGTGAGAC 60.250 55.000 5.91 0.00 0.00 3.36
442 443 1.115930 AAGACTGGCCGTGTGAGACT 61.116 55.000 5.91 0.00 0.00 3.24
443 444 1.373497 GACTGGCCGTGTGAGACTG 60.373 63.158 5.91 0.00 0.00 3.51
444 445 1.806461 GACTGGCCGTGTGAGACTGA 61.806 60.000 5.91 0.00 0.00 3.41
445 446 1.373497 CTGGCCGTGTGAGACTGAC 60.373 63.158 0.00 0.00 0.00 3.51
446 447 1.810606 CTGGCCGTGTGAGACTGACT 61.811 60.000 0.00 0.00 0.00 3.41
447 448 1.367840 GGCCGTGTGAGACTGACTT 59.632 57.895 0.00 0.00 0.00 3.01
448 449 0.946221 GGCCGTGTGAGACTGACTTG 60.946 60.000 0.00 0.00 0.00 3.16
449 450 0.249489 GCCGTGTGAGACTGACTTGT 60.249 55.000 0.00 0.00 0.00 3.16
450 451 1.000607 GCCGTGTGAGACTGACTTGTA 60.001 52.381 0.00 0.00 0.00 2.41
451 452 2.352814 GCCGTGTGAGACTGACTTGTAT 60.353 50.000 0.00 0.00 0.00 2.29
452 453 3.502920 CCGTGTGAGACTGACTTGTATC 58.497 50.000 0.00 0.00 0.00 2.24
453 454 3.502920 CGTGTGAGACTGACTTGTATCC 58.497 50.000 0.00 0.00 0.00 2.59
454 455 3.057526 CGTGTGAGACTGACTTGTATCCA 60.058 47.826 0.00 0.00 0.00 3.41
455 456 4.489810 GTGTGAGACTGACTTGTATCCAG 58.510 47.826 0.00 0.00 0.00 3.86
456 457 3.056536 TGTGAGACTGACTTGTATCCAGC 60.057 47.826 0.00 0.00 0.00 4.85
457 458 2.164422 TGAGACTGACTTGTATCCAGCG 59.836 50.000 0.00 0.00 0.00 5.18
458 459 2.164624 GAGACTGACTTGTATCCAGCGT 59.835 50.000 0.00 0.00 0.00 5.07
459 460 2.094494 AGACTGACTTGTATCCAGCGTG 60.094 50.000 0.00 0.00 0.00 5.34
460 461 1.066858 ACTGACTTGTATCCAGCGTGG 60.067 52.381 0.00 0.00 39.43 4.94
461 462 0.391130 TGACTTGTATCCAGCGTGGC 60.391 55.000 0.00 0.00 37.47 5.01
462 463 1.078426 ACTTGTATCCAGCGTGGCC 60.078 57.895 0.00 0.00 37.47 5.36
463 464 2.125310 TTGTATCCAGCGTGGCCG 60.125 61.111 0.00 0.00 37.47 6.13
464 465 2.572095 CTTGTATCCAGCGTGGCCGA 62.572 60.000 0.00 0.00 37.47 5.54
465 466 1.966901 TTGTATCCAGCGTGGCCGAT 61.967 55.000 0.00 0.00 37.47 4.18
466 467 1.227556 GTATCCAGCGTGGCCGATT 60.228 57.895 0.00 0.00 37.47 3.34
467 468 1.227527 TATCCAGCGTGGCCGATTG 60.228 57.895 0.00 0.00 37.47 2.67
468 469 1.681486 TATCCAGCGTGGCCGATTGA 61.681 55.000 0.00 0.00 37.47 2.57
469 470 2.930385 ATCCAGCGTGGCCGATTGAG 62.930 60.000 0.00 0.00 37.47 3.02
470 471 3.869272 CAGCGTGGCCGATTGAGC 61.869 66.667 0.00 0.00 35.63 4.26
471 472 4.393155 AGCGTGGCCGATTGAGCA 62.393 61.111 0.00 0.00 35.63 4.26
472 473 3.869272 GCGTGGCCGATTGAGCAG 61.869 66.667 0.00 0.00 35.63 4.24
473 474 3.197790 CGTGGCCGATTGAGCAGG 61.198 66.667 0.00 0.00 35.63 4.85
474 475 2.268920 GTGGCCGATTGAGCAGGA 59.731 61.111 0.00 0.00 0.00 3.86
475 476 1.153086 GTGGCCGATTGAGCAGGAT 60.153 57.895 0.00 0.00 0.00 3.24
476 477 0.749454 GTGGCCGATTGAGCAGGATT 60.749 55.000 0.00 0.00 0.00 3.01
477 478 0.749091 TGGCCGATTGAGCAGGATTG 60.749 55.000 0.00 0.00 0.00 2.67
478 479 0.464373 GGCCGATTGAGCAGGATTGA 60.464 55.000 0.00 0.00 0.00 2.57
479 480 1.602311 GCCGATTGAGCAGGATTGAT 58.398 50.000 0.00 0.00 0.00 2.57
480 481 1.534595 GCCGATTGAGCAGGATTGATC 59.465 52.381 0.00 0.00 40.13 2.92
481 482 2.809665 GCCGATTGAGCAGGATTGATCT 60.810 50.000 0.00 0.00 40.37 2.75
482 483 2.806818 CCGATTGAGCAGGATTGATCTG 59.193 50.000 0.00 0.00 40.37 2.90
483 484 3.493873 CCGATTGAGCAGGATTGATCTGA 60.494 47.826 0.00 0.00 40.37 3.27
484 485 3.493877 CGATTGAGCAGGATTGATCTGAC 59.506 47.826 0.00 0.00 40.37 3.51
485 486 2.591571 TGAGCAGGATTGATCTGACG 57.408 50.000 0.00 0.00 40.37 4.35
486 487 1.137675 TGAGCAGGATTGATCTGACGG 59.862 52.381 0.00 0.00 40.37 4.79
487 488 1.137872 GAGCAGGATTGATCTGACGGT 59.862 52.381 0.00 0.00 36.79 4.83
488 489 1.556911 AGCAGGATTGATCTGACGGTT 59.443 47.619 0.00 0.00 34.36 4.44
489 490 2.766263 AGCAGGATTGATCTGACGGTTA 59.234 45.455 0.00 0.00 34.36 2.85
490 491 3.389329 AGCAGGATTGATCTGACGGTTAT 59.611 43.478 0.00 0.00 34.36 1.89
491 492 3.496130 GCAGGATTGATCTGACGGTTATG 59.504 47.826 0.00 0.00 34.36 1.90
492 493 3.496130 CAGGATTGATCTGACGGTTATGC 59.504 47.826 0.00 0.00 34.36 3.14
493 494 3.134623 AGGATTGATCTGACGGTTATGCA 59.865 43.478 0.00 0.00 0.00 3.96
494 495 3.876914 GGATTGATCTGACGGTTATGCAA 59.123 43.478 0.00 0.00 0.00 4.08
495 496 4.024556 GGATTGATCTGACGGTTATGCAAG 60.025 45.833 0.00 0.00 0.00 4.01
496 497 2.279741 TGATCTGACGGTTATGCAAGC 58.720 47.619 0.00 0.00 0.00 4.01
532 533 3.372730 GTGCATCAGCCGGCCAAA 61.373 61.111 26.15 9.50 41.13 3.28
533 534 3.063704 TGCATCAGCCGGCCAAAG 61.064 61.111 26.15 12.78 41.13 2.77
534 535 3.830192 GCATCAGCCGGCCAAAGG 61.830 66.667 26.15 11.96 33.58 3.11
535 536 2.361610 CATCAGCCGGCCAAAGGT 60.362 61.111 26.15 3.90 0.00 3.50
536 537 1.077787 CATCAGCCGGCCAAAGGTA 60.078 57.895 26.15 0.50 0.00 3.08
537 538 0.679640 CATCAGCCGGCCAAAGGTAA 60.680 55.000 26.15 0.00 0.00 2.85
538 539 0.394352 ATCAGCCGGCCAAAGGTAAG 60.394 55.000 26.15 1.85 0.00 2.34
539 540 2.046285 CAGCCGGCCAAAGGTAAGG 61.046 63.158 26.15 0.00 0.00 2.69
540 541 2.035155 GCCGGCCAAAGGTAAGGT 59.965 61.111 18.11 0.00 0.00 3.50
541 542 1.605451 GCCGGCCAAAGGTAAGGTT 60.605 57.895 18.11 0.00 0.00 3.50
542 543 1.183030 GCCGGCCAAAGGTAAGGTTT 61.183 55.000 18.11 0.00 0.00 3.27
543 544 1.334160 CCGGCCAAAGGTAAGGTTTT 58.666 50.000 2.24 0.00 0.00 2.43
544 545 1.271379 CCGGCCAAAGGTAAGGTTTTC 59.729 52.381 2.24 0.00 0.00 2.29
545 546 1.271379 CGGCCAAAGGTAAGGTTTTCC 59.729 52.381 2.24 0.00 41.05 3.13
546 547 1.621814 GGCCAAAGGTAAGGTTTTCCC 59.378 52.381 0.00 0.00 41.86 3.97
548 549 3.500836 GGCCAAAGGTAAGGTTTTCCCTA 60.501 47.826 0.00 0.00 45.47 3.53
549 550 3.762288 GCCAAAGGTAAGGTTTTCCCTAG 59.238 47.826 0.00 0.00 45.47 3.02
550 551 4.507869 GCCAAAGGTAAGGTTTTCCCTAGA 60.508 45.833 0.00 0.00 45.47 2.43
551 552 5.637127 CCAAAGGTAAGGTTTTCCCTAGAA 58.363 41.667 0.00 0.00 45.47 2.10
552 553 6.253758 CCAAAGGTAAGGTTTTCCCTAGAAT 58.746 40.000 0.00 0.00 45.47 2.40
553 554 7.407729 CCAAAGGTAAGGTTTTCCCTAGAATA 58.592 38.462 0.00 0.00 45.47 1.75
554 555 7.891712 CCAAAGGTAAGGTTTTCCCTAGAATAA 59.108 37.037 0.00 0.00 45.47 1.40
555 556 9.304335 CAAAGGTAAGGTTTTCCCTAGAATAAA 57.696 33.333 0.00 0.00 45.47 1.40
557 558 9.696572 AAGGTAAGGTTTTCCCTAGAATAAATC 57.303 33.333 0.00 0.00 45.47 2.17
558 559 8.842764 AGGTAAGGTTTTCCCTAGAATAAATCA 58.157 33.333 0.00 0.00 45.47 2.57
559 560 8.900781 GGTAAGGTTTTCCCTAGAATAAATCAC 58.099 37.037 0.00 0.00 45.47 3.06
560 561 9.682465 GTAAGGTTTTCCCTAGAATAAATCACT 57.318 33.333 0.00 0.00 45.47 3.41
561 562 8.809468 AAGGTTTTCCCTAGAATAAATCACTC 57.191 34.615 0.00 0.00 45.47 3.51
562 563 7.048512 AGGTTTTCCCTAGAATAAATCACTCG 58.951 38.462 0.00 0.00 43.87 4.18
563 564 7.046033 GGTTTTCCCTAGAATAAATCACTCGA 58.954 38.462 0.00 0.00 0.00 4.04
564 565 7.011202 GGTTTTCCCTAGAATAAATCACTCGAC 59.989 40.741 0.00 0.00 0.00 4.20
565 566 5.786264 TCCCTAGAATAAATCACTCGACC 57.214 43.478 0.00 0.00 0.00 4.79
566 567 5.205821 TCCCTAGAATAAATCACTCGACCA 58.794 41.667 0.00 0.00 0.00 4.02
567 568 5.068723 TCCCTAGAATAAATCACTCGACCAC 59.931 44.000 0.00 0.00 0.00 4.16
568 569 5.163447 CCCTAGAATAAATCACTCGACCACA 60.163 44.000 0.00 0.00 0.00 4.17
569 570 6.338146 CCTAGAATAAATCACTCGACCACAA 58.662 40.000 0.00 0.00 0.00 3.33
570 571 6.986817 CCTAGAATAAATCACTCGACCACAAT 59.013 38.462 0.00 0.00 0.00 2.71
571 572 6.668541 AGAATAAATCACTCGACCACAATG 57.331 37.500 0.00 0.00 0.00 2.82
572 573 6.173339 AGAATAAATCACTCGACCACAATGT 58.827 36.000 0.00 0.00 0.00 2.71
573 574 7.327975 AGAATAAATCACTCGACCACAATGTA 58.672 34.615 0.00 0.00 0.00 2.29
574 575 7.492669 AGAATAAATCACTCGACCACAATGTAG 59.507 37.037 0.00 0.00 0.00 2.74
575 576 3.526931 ATCACTCGACCACAATGTAGG 57.473 47.619 0.00 0.00 0.00 3.18
576 577 1.067142 TCACTCGACCACAATGTAGGC 60.067 52.381 2.53 0.00 0.00 3.93
577 578 1.066858 CACTCGACCACAATGTAGGCT 60.067 52.381 0.00 0.00 0.00 4.58
578 579 1.204941 ACTCGACCACAATGTAGGCTC 59.795 52.381 0.00 0.00 0.00 4.70
579 580 0.535335 TCGACCACAATGTAGGCTCC 59.465 55.000 0.00 0.00 0.00 4.70
580 581 0.537188 CGACCACAATGTAGGCTCCT 59.463 55.000 0.00 0.00 0.00 3.69
581 582 1.066143 CGACCACAATGTAGGCTCCTT 60.066 52.381 0.00 0.00 0.00 3.36
582 583 2.359900 GACCACAATGTAGGCTCCTTG 58.640 52.381 0.00 0.00 0.00 3.61
583 584 1.098050 CCACAATGTAGGCTCCTTGC 58.902 55.000 0.00 0.00 41.94 4.01
584 585 0.729116 CACAATGTAGGCTCCTTGCG 59.271 55.000 0.00 0.00 44.05 4.85
585 586 0.324943 ACAATGTAGGCTCCTTGCGT 59.675 50.000 0.00 0.00 44.05 5.24
586 587 0.729116 CAATGTAGGCTCCTTGCGTG 59.271 55.000 0.00 0.00 44.05 5.34
587 588 0.613260 AATGTAGGCTCCTTGCGTGA 59.387 50.000 0.00 0.00 44.05 4.35
588 589 0.108138 ATGTAGGCTCCTTGCGTGAC 60.108 55.000 0.00 0.00 44.05 3.67
589 590 1.292223 GTAGGCTCCTTGCGTGACA 59.708 57.895 0.00 0.00 44.05 3.58
590 591 1.014564 GTAGGCTCCTTGCGTGACAC 61.015 60.000 0.00 0.00 44.05 3.67
591 592 2.167398 TAGGCTCCTTGCGTGACACC 62.167 60.000 0.00 0.00 44.05 4.16
592 593 3.414700 GCTCCTTGCGTGACACCG 61.415 66.667 0.00 0.00 0.00 4.94
593 594 2.338620 CTCCTTGCGTGACACCGA 59.661 61.111 0.00 0.00 0.00 4.69
594 595 1.079819 CTCCTTGCGTGACACCGAT 60.080 57.895 0.00 0.00 0.00 4.18
595 596 1.078759 CTCCTTGCGTGACACCGATC 61.079 60.000 0.00 0.00 0.00 3.69
596 597 1.374125 CCTTGCGTGACACCGATCA 60.374 57.895 0.00 0.00 0.00 2.92
597 598 1.354337 CCTTGCGTGACACCGATCAG 61.354 60.000 0.00 0.00 0.00 2.90
598 599 1.959899 CTTGCGTGACACCGATCAGC 61.960 60.000 0.00 0.00 0.00 4.26
599 600 3.545481 GCGTGACACCGATCAGCG 61.545 66.667 0.00 0.00 40.47 5.18
600 601 2.126463 CGTGACACCGATCAGCGT 60.126 61.111 0.00 0.00 38.67 5.07
601 602 2.152699 CGTGACACCGATCAGCGTC 61.153 63.158 0.00 0.00 38.67 5.19
602 603 1.213013 GTGACACCGATCAGCGTCT 59.787 57.895 0.00 0.00 38.67 4.18
603 604 0.798771 GTGACACCGATCAGCGTCTC 60.799 60.000 0.00 0.00 38.67 3.36
604 605 1.226717 GACACCGATCAGCGTCTCC 60.227 63.158 0.00 0.00 38.67 3.71
605 606 1.658686 GACACCGATCAGCGTCTCCT 61.659 60.000 0.00 0.00 38.67 3.69
606 607 1.064946 CACCGATCAGCGTCTCCTC 59.935 63.158 0.00 0.00 38.67 3.71
607 608 1.077357 ACCGATCAGCGTCTCCTCT 60.077 57.895 0.00 0.00 38.67 3.69
608 609 0.681564 ACCGATCAGCGTCTCCTCTT 60.682 55.000 0.00 0.00 38.67 2.85
609 610 0.030101 CCGATCAGCGTCTCCTCTTC 59.970 60.000 0.00 0.00 38.67 2.87
610 611 0.030101 CGATCAGCGTCTCCTCTTCC 59.970 60.000 0.00 0.00 34.64 3.46
611 612 1.398692 GATCAGCGTCTCCTCTTCCT 58.601 55.000 0.00 0.00 0.00 3.36
612 613 1.754226 GATCAGCGTCTCCTCTTCCTT 59.246 52.381 0.00 0.00 0.00 3.36
613 614 1.633774 TCAGCGTCTCCTCTTCCTTT 58.366 50.000 0.00 0.00 0.00 3.11
614 615 1.971357 TCAGCGTCTCCTCTTCCTTTT 59.029 47.619 0.00 0.00 0.00 2.27
615 616 2.368875 TCAGCGTCTCCTCTTCCTTTTT 59.631 45.455 0.00 0.00 0.00 1.94
634 635 3.951775 TTTTCTCTCTCTCTGGTCTGC 57.048 47.619 0.00 0.00 0.00 4.26
635 636 1.846007 TTCTCTCTCTCTGGTCTGCC 58.154 55.000 0.00 0.00 0.00 4.85
636 637 0.998928 TCTCTCTCTCTGGTCTGCCT 59.001 55.000 0.00 0.00 35.27 4.75
637 638 1.105457 CTCTCTCTCTGGTCTGCCTG 58.895 60.000 0.00 0.00 35.27 4.85
638 639 0.407528 TCTCTCTCTGGTCTGCCTGT 59.592 55.000 0.00 0.00 35.49 4.00
639 640 1.636003 TCTCTCTCTGGTCTGCCTGTA 59.364 52.381 0.00 0.00 35.49 2.74
640 641 2.023673 CTCTCTCTGGTCTGCCTGTAG 58.976 57.143 0.00 0.00 35.49 2.74
641 642 0.459489 CTCTCTGGTCTGCCTGTAGC 59.541 60.000 0.00 0.00 44.14 3.58
651 652 3.875838 GCCTGTAGCGTCCTCTATG 57.124 57.895 0.00 0.00 0.00 2.23
652 653 0.319125 GCCTGTAGCGTCCTCTATGC 60.319 60.000 0.00 0.00 40.71 3.14
668 669 3.200593 GCTGGAGGCATCGCTGTG 61.201 66.667 0.00 0.00 41.35 3.66
669 670 2.513204 CTGGAGGCATCGCTGTGG 60.513 66.667 0.00 0.00 0.00 4.17
670 671 4.783621 TGGAGGCATCGCTGTGGC 62.784 66.667 3.95 3.95 44.31 5.01
684 685 4.912395 TGGCTGCCCCCACACAAC 62.912 66.667 17.53 0.00 0.00 3.32
691 692 4.579384 CCCCACACAACGCCCAGT 62.579 66.667 0.00 0.00 0.00 4.00
701 702 0.606096 AACGCCCAGTAAATTTGGCC 59.394 50.000 10.70 0.00 40.87 5.36
712 713 7.317390 CCAGTAAATTTGGCCGTAAAAAGTAT 58.683 34.615 0.00 0.00 0.00 2.12
714 715 9.498307 CAGTAAATTTGGCCGTAAAAAGTATAG 57.502 33.333 0.00 0.00 0.00 1.31
716 717 9.494479 GTAAATTTGGCCGTAAAAAGTATAGAC 57.506 33.333 0.00 0.00 0.00 2.59
720 721 7.507733 TTGGCCGTAAAAAGTATAGACAAAA 57.492 32.000 0.00 0.00 0.00 2.44
721 722 7.507733 TGGCCGTAAAAAGTATAGACAAAAA 57.492 32.000 0.00 0.00 0.00 1.94
722 723 7.361894 TGGCCGTAAAAAGTATAGACAAAAAC 58.638 34.615 0.00 0.00 0.00 2.43
723 724 7.013083 TGGCCGTAAAAAGTATAGACAAAAACA 59.987 33.333 0.00 0.00 0.00 2.83
737 738 6.153756 AGACAAAAACACTAACACAAACCAC 58.846 36.000 0.00 0.00 0.00 4.16
747 748 5.650266 ACTAACACAAACCACTTGATCACAA 59.350 36.000 0.00 0.00 38.50 3.33
794 806 1.402968 AGCGTCGCCTCTTCGTTTATA 59.597 47.619 14.86 0.00 0.00 0.98
821 833 2.097629 TCTTGTCTGGATTAGAGCGTCG 59.902 50.000 0.00 0.00 35.70 5.12
1263 1280 1.691195 GCTCTACTCCTTCCAGGGCC 61.691 65.000 0.00 0.00 35.59 5.80
1715 1732 0.664761 TCGACGTCGTCCACTTCTTT 59.335 50.000 34.40 0.00 40.80 2.52
2189 2206 0.818445 GATGGAGCTCCGAGGACGTA 60.818 60.000 27.43 7.99 39.43 3.57
2351 2372 5.444745 CGTCGGCAGTTAATCTTTCTTCTTC 60.445 44.000 0.00 0.00 0.00 2.87
2353 2374 4.938226 CGGCAGTTAATCTTTCTTCTTCCT 59.062 41.667 0.00 0.00 0.00 3.36
2404 2429 6.853872 TCGATTAAACAACAACACTTGTATGC 59.146 34.615 0.00 0.00 44.59 3.14
2492 2517 4.349871 GCCGTGTTCACGTGCGTC 62.350 66.667 20.93 4.12 0.00 5.19
2546 2572 3.425758 CGGAAATTAACGCTGTTCTTCCC 60.426 47.826 15.67 0.00 0.00 3.97
2718 2762 5.346281 GCTTTTGCAGTCAGTACAGTAGTAG 59.654 44.000 0.00 0.00 46.58 2.57
2719 2763 6.401047 TTTTGCAGTCAGTACAGTAGTAGT 57.599 37.500 0.00 0.00 34.19 2.73
2721 2765 6.738832 TTGCAGTCAGTACAGTAGTAGTAG 57.261 41.667 0.00 0.00 32.65 2.57
2792 2841 3.264706 TCCATCCAAGATCCAACCGTAAA 59.735 43.478 0.00 0.00 0.00 2.01
2799 2848 2.480845 GATCCAACCGTAAAGGGATCG 58.519 52.381 0.00 0.00 44.40 3.69
2871 2927 2.351350 CCGTTGCATTAGTTGACCAACC 60.351 50.000 9.07 0.00 42.06 3.77
2946 3006 3.578282 TCCTTGAGTGTTCAGCATACTCA 59.422 43.478 0.00 0.00 46.42 3.41
2983 3046 0.240411 GTCTGCAAGCCAAGCAAGAG 59.760 55.000 0.00 0.00 42.17 2.85
3002 3065 2.353889 GAGCATCTGAACGTGCATCATT 59.646 45.455 0.00 0.00 43.63 2.57
3003 3066 2.096980 AGCATCTGAACGTGCATCATTG 59.903 45.455 0.00 0.00 43.63 2.82
3029 3092 1.400494 GTGGCTGGCGGTAACTAATTG 59.600 52.381 0.00 0.00 0.00 2.32
3030 3093 0.380733 GGCTGGCGGTAACTAATTGC 59.619 55.000 0.00 0.00 0.00 3.56
3104 3172 1.715785 GAGAGGATTAGGGAGCAGCT 58.284 55.000 0.00 0.00 0.00 4.24
3145 3213 1.675641 CCGTCCCTTTCCTTGCCTG 60.676 63.158 0.00 0.00 0.00 4.85
3204 3278 2.107041 TTGTCCCGTTGTCATCGCCT 62.107 55.000 0.00 0.00 0.00 5.52
3205 3279 1.810030 GTCCCGTTGTCATCGCCTC 60.810 63.158 0.00 0.00 0.00 4.70
3382 3471 0.030638 GCCTCGCTTTTGCTTGTGAA 59.969 50.000 0.00 0.00 44.80 3.18
3384 3473 1.600413 CCTCGCTTTTGCTTGTGAACC 60.600 52.381 0.00 0.00 44.80 3.62
3401 3494 0.760189 ACCATGGGCAGCTTTGTTGT 60.760 50.000 18.09 0.00 0.00 3.32
3487 3584 2.388232 GGACACGGCGCAGGTAAAG 61.388 63.158 13.26 0.00 0.00 1.85
3488 3585 3.023591 GACACGGCGCAGGTAAAGC 62.024 63.158 13.26 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.023357 TGCAGATTTAGCAATTTAGCACAA 57.977 33.333 0.00 0.00 39.39 3.33
2 3 5.641783 TGCAGATTTAGCAATTTAGCACA 57.358 34.783 0.00 0.00 39.39 4.57
12 13 9.195411 CAATTTTAGTTCTTTGCAGATTTAGCA 57.805 29.630 0.00 0.00 40.85 3.49
13 14 8.650714 CCAATTTTAGTTCTTTGCAGATTTAGC 58.349 33.333 0.00 0.00 0.00 3.09
14 15 9.912634 TCCAATTTTAGTTCTTTGCAGATTTAG 57.087 29.630 0.00 0.00 0.00 1.85
16 17 9.612066 TTTCCAATTTTAGTTCTTTGCAGATTT 57.388 25.926 0.00 0.00 0.00 2.17
17 18 9.612066 TTTTCCAATTTTAGTTCTTTGCAGATT 57.388 25.926 0.00 0.00 0.00 2.40
18 19 9.612066 TTTTTCCAATTTTAGTTCTTTGCAGAT 57.388 25.926 0.00 0.00 0.00 2.90
55 56 9.444600 GGTGATTAGACTACTTGACCAAATAAA 57.555 33.333 0.00 0.00 0.00 1.40
56 57 8.044908 GGGTGATTAGACTACTTGACCAAATAA 58.955 37.037 0.00 0.00 0.00 1.40
57 58 7.365295 GGGGTGATTAGACTACTTGACCAAATA 60.365 40.741 0.00 0.00 0.00 1.40
58 59 6.415573 GGGTGATTAGACTACTTGACCAAAT 58.584 40.000 0.00 0.00 0.00 2.32
59 60 5.280317 GGGGTGATTAGACTACTTGACCAAA 60.280 44.000 0.00 0.00 0.00 3.28
60 61 4.224370 GGGGTGATTAGACTACTTGACCAA 59.776 45.833 0.00 0.00 0.00 3.67
61 62 3.773119 GGGGTGATTAGACTACTTGACCA 59.227 47.826 0.00 0.00 0.00 4.02
62 63 3.134262 GGGGGTGATTAGACTACTTGACC 59.866 52.174 0.00 0.00 0.00 4.02
63 64 4.403585 GGGGGTGATTAGACTACTTGAC 57.596 50.000 0.00 0.00 0.00 3.18
87 88 3.958798 TCGAAAGTATGTCTAGAAGGGGG 59.041 47.826 0.00 0.00 0.00 5.40
88 89 5.279056 GGATCGAAAGTATGTCTAGAAGGGG 60.279 48.000 0.00 0.00 0.00 4.79
89 90 5.302059 TGGATCGAAAGTATGTCTAGAAGGG 59.698 44.000 0.00 0.00 0.00 3.95
90 91 6.392625 TGGATCGAAAGTATGTCTAGAAGG 57.607 41.667 0.00 0.00 0.00 3.46
91 92 7.258441 TGTTGGATCGAAAGTATGTCTAGAAG 58.742 38.462 0.00 0.00 0.00 2.85
92 93 7.165460 TGTTGGATCGAAAGTATGTCTAGAA 57.835 36.000 0.00 0.00 0.00 2.10
93 94 6.680625 GCTGTTGGATCGAAAGTATGTCTAGA 60.681 42.308 0.00 0.00 0.00 2.43
94 95 5.460419 GCTGTTGGATCGAAAGTATGTCTAG 59.540 44.000 0.00 0.00 0.00 2.43
95 96 5.127194 AGCTGTTGGATCGAAAGTATGTCTA 59.873 40.000 0.00 0.00 0.00 2.59
96 97 4.081420 AGCTGTTGGATCGAAAGTATGTCT 60.081 41.667 0.00 0.00 0.00 3.41
97 98 4.184629 AGCTGTTGGATCGAAAGTATGTC 58.815 43.478 0.00 0.00 0.00 3.06
98 99 4.207891 AGCTGTTGGATCGAAAGTATGT 57.792 40.909 0.00 0.00 0.00 2.29
99 100 5.755375 ACATAGCTGTTGGATCGAAAGTATG 59.245 40.000 0.00 1.02 28.70 2.39
100 101 5.918608 ACATAGCTGTTGGATCGAAAGTAT 58.081 37.500 0.00 0.00 28.70 2.12
101 102 5.339008 ACATAGCTGTTGGATCGAAAGTA 57.661 39.130 0.00 0.00 28.70 2.24
102 103 4.207891 ACATAGCTGTTGGATCGAAAGT 57.792 40.909 0.00 0.00 28.70 2.66
103 104 5.352569 AGAAACATAGCTGTTGGATCGAAAG 59.647 40.000 0.00 0.00 44.83 2.62
104 105 5.122239 CAGAAACATAGCTGTTGGATCGAAA 59.878 40.000 0.00 0.00 44.83 3.46
105 106 4.631377 CAGAAACATAGCTGTTGGATCGAA 59.369 41.667 0.00 0.00 44.83 3.71
106 107 4.081697 TCAGAAACATAGCTGTTGGATCGA 60.082 41.667 0.00 0.00 44.83 3.59
107 108 4.183865 TCAGAAACATAGCTGTTGGATCG 58.816 43.478 0.00 0.00 44.83 3.69
108 109 6.072508 TGTTTCAGAAACATAGCTGTTGGATC 60.073 38.462 22.53 0.00 45.79 3.36
109 110 5.769662 TGTTTCAGAAACATAGCTGTTGGAT 59.230 36.000 22.53 0.00 45.79 3.41
110 111 5.129634 TGTTTCAGAAACATAGCTGTTGGA 58.870 37.500 22.53 0.00 45.79 3.53
111 112 5.437289 TGTTTCAGAAACATAGCTGTTGG 57.563 39.130 22.53 0.00 45.79 3.77
122 123 3.248266 GCATGAGGCATGTTTCAGAAAC 58.752 45.455 17.85 17.85 43.10 2.78
123 124 3.581024 GCATGAGGCATGTTTCAGAAA 57.419 42.857 8.95 0.00 43.10 2.52
135 136 2.033049 GTCAGACATTGATGCATGAGGC 59.967 50.000 2.46 0.00 45.13 4.70
136 137 2.617308 GGTCAGACATTGATGCATGAGG 59.383 50.000 2.46 0.00 38.29 3.86
137 138 3.064958 GTGGTCAGACATTGATGCATGAG 59.935 47.826 2.46 0.00 38.29 2.90
138 139 3.011818 GTGGTCAGACATTGATGCATGA 58.988 45.455 2.46 0.00 38.29 3.07
139 140 3.014623 AGTGGTCAGACATTGATGCATG 58.985 45.455 2.46 0.00 38.29 4.06
140 141 3.276857 GAGTGGTCAGACATTGATGCAT 58.723 45.455 0.00 0.00 38.29 3.96
141 142 2.038820 TGAGTGGTCAGACATTGATGCA 59.961 45.455 2.17 0.00 38.29 3.96
142 143 2.417933 GTGAGTGGTCAGACATTGATGC 59.582 50.000 2.17 0.00 38.29 3.91
143 144 3.931468 GAGTGAGTGGTCAGACATTGATG 59.069 47.826 2.17 0.00 38.29 3.07
144 145 3.837146 AGAGTGAGTGGTCAGACATTGAT 59.163 43.478 2.17 0.00 38.29 2.57
145 146 3.234353 AGAGTGAGTGGTCAGACATTGA 58.766 45.455 2.17 0.00 31.53 2.57
146 147 3.257873 AGAGAGTGAGTGGTCAGACATTG 59.742 47.826 2.17 0.00 31.53 2.82
147 148 3.505386 AGAGAGTGAGTGGTCAGACATT 58.495 45.455 2.17 0.00 31.53 2.71
148 149 3.168035 AGAGAGTGAGTGGTCAGACAT 57.832 47.619 2.17 0.00 31.53 3.06
149 150 2.666272 AGAGAGTGAGTGGTCAGACA 57.334 50.000 2.17 0.00 31.53 3.41
150 151 3.120130 CGTTAGAGAGTGAGTGGTCAGAC 60.120 52.174 0.00 0.00 31.53 3.51
151 152 3.075148 CGTTAGAGAGTGAGTGGTCAGA 58.925 50.000 0.00 0.00 31.53 3.27
152 153 2.414824 GCGTTAGAGAGTGAGTGGTCAG 60.415 54.545 0.00 0.00 31.53 3.51
153 154 1.540267 GCGTTAGAGAGTGAGTGGTCA 59.460 52.381 0.00 0.00 0.00 4.02
154 155 1.135344 GGCGTTAGAGAGTGAGTGGTC 60.135 57.143 0.00 0.00 0.00 4.02
155 156 0.889306 GGCGTTAGAGAGTGAGTGGT 59.111 55.000 0.00 0.00 0.00 4.16
156 157 0.179161 CGGCGTTAGAGAGTGAGTGG 60.179 60.000 0.00 0.00 0.00 4.00
157 158 0.179161 CCGGCGTTAGAGAGTGAGTG 60.179 60.000 6.01 0.00 0.00 3.51
158 159 1.313812 CCCGGCGTTAGAGAGTGAGT 61.314 60.000 6.01 0.00 0.00 3.41
159 160 1.433879 CCCGGCGTTAGAGAGTGAG 59.566 63.158 6.01 0.00 0.00 3.51
160 161 2.707849 GCCCGGCGTTAGAGAGTGA 61.708 63.158 6.01 0.00 0.00 3.41
161 162 2.202756 GCCCGGCGTTAGAGAGTG 60.203 66.667 6.01 0.00 0.00 3.51
187 188 3.989698 TAGCTCGAGTTGCAGCGCC 62.990 63.158 15.13 0.00 40.84 6.53
188 189 1.880340 ATAGCTCGAGTTGCAGCGC 60.880 57.895 15.13 0.00 40.84 5.92
189 190 0.803768 ACATAGCTCGAGTTGCAGCG 60.804 55.000 15.13 0.00 40.84 5.18
190 191 1.363744 AACATAGCTCGAGTTGCAGC 58.636 50.000 15.13 0.00 35.73 5.25
191 192 3.061831 CAGAAACATAGCTCGAGTTGCAG 59.938 47.826 15.13 5.18 0.00 4.41
192 193 2.995939 CAGAAACATAGCTCGAGTTGCA 59.004 45.455 15.13 0.00 0.00 4.08
193 194 3.254060 TCAGAAACATAGCTCGAGTTGC 58.746 45.455 15.13 0.00 0.00 4.17
194 195 5.177511 TGTTTCAGAAACATAGCTCGAGTTG 59.822 40.000 22.53 11.85 45.79 3.16
195 196 5.297547 TGTTTCAGAAACATAGCTCGAGTT 58.702 37.500 22.53 11.13 45.79 3.01
196 197 4.883083 TGTTTCAGAAACATAGCTCGAGT 58.117 39.130 22.53 3.51 45.79 4.18
207 208 5.460091 GCAACAAGGATCTTGTTTCAGAAAC 59.540 40.000 19.54 17.85 40.30 2.78
208 209 5.126869 TGCAACAAGGATCTTGTTTCAGAAA 59.873 36.000 19.54 0.00 40.30 2.52
209 210 4.644234 TGCAACAAGGATCTTGTTTCAGAA 59.356 37.500 19.54 5.05 40.30 3.02
210 211 4.206375 TGCAACAAGGATCTTGTTTCAGA 58.794 39.130 19.54 2.37 40.30 3.27
211 212 4.543692 CTGCAACAAGGATCTTGTTTCAG 58.456 43.478 25.82 25.82 43.26 3.02
212 213 4.206375 TCTGCAACAAGGATCTTGTTTCA 58.794 39.130 19.54 19.23 40.30 2.69
213 214 4.836125 TCTGCAACAAGGATCTTGTTTC 57.164 40.909 19.54 16.35 40.30 2.78
214 215 5.596836 TTTCTGCAACAAGGATCTTGTTT 57.403 34.783 19.54 6.51 40.30 2.83
215 216 5.596836 TTTTCTGCAACAAGGATCTTGTT 57.403 34.783 17.23 17.23 42.75 2.83
216 217 5.127682 ACTTTTTCTGCAACAAGGATCTTGT 59.872 36.000 7.41 7.41 0.00 3.16
217 218 5.594926 ACTTTTTCTGCAACAAGGATCTTG 58.405 37.500 6.15 6.15 0.00 3.02
218 219 5.221322 GGACTTTTTCTGCAACAAGGATCTT 60.221 40.000 0.00 0.00 0.00 2.40
219 220 4.279420 GGACTTTTTCTGCAACAAGGATCT 59.721 41.667 0.00 0.00 0.00 2.75
220 221 4.279420 AGGACTTTTTCTGCAACAAGGATC 59.721 41.667 0.00 0.00 0.00 3.36
221 222 4.218312 AGGACTTTTTCTGCAACAAGGAT 58.782 39.130 0.00 0.00 0.00 3.24
222 223 3.631250 AGGACTTTTTCTGCAACAAGGA 58.369 40.909 0.00 0.00 0.00 3.36
223 224 4.142182 TGAAGGACTTTTTCTGCAACAAGG 60.142 41.667 0.00 0.00 0.00 3.61
224 225 4.800471 GTGAAGGACTTTTTCTGCAACAAG 59.200 41.667 0.00 0.00 0.00 3.16
225 226 4.674101 CGTGAAGGACTTTTTCTGCAACAA 60.674 41.667 0.00 0.00 0.00 2.83
226 227 3.181501 CGTGAAGGACTTTTTCTGCAACA 60.182 43.478 0.00 0.00 0.00 3.33
227 228 3.363178 CGTGAAGGACTTTTTCTGCAAC 58.637 45.455 0.00 0.00 0.00 4.17
228 229 2.357637 CCGTGAAGGACTTTTTCTGCAA 59.642 45.455 0.00 0.00 45.00 4.08
229 230 1.946768 CCGTGAAGGACTTTTTCTGCA 59.053 47.619 0.00 0.00 45.00 4.41
230 231 1.335051 GCCGTGAAGGACTTTTTCTGC 60.335 52.381 0.00 0.00 45.00 4.26
231 232 2.688364 GCCGTGAAGGACTTTTTCTG 57.312 50.000 0.00 0.00 45.00 3.02
240 241 1.611519 AAAATTTCGGCCGTGAAGGA 58.388 45.000 27.15 0.06 45.00 3.36
241 242 2.030274 AGAAAAATTTCGGCCGTGAAGG 60.030 45.455 27.15 0.00 41.92 3.46
242 243 3.282831 AGAAAAATTTCGGCCGTGAAG 57.717 42.857 27.15 0.00 41.92 3.02
243 244 3.719173 AAGAAAAATTTCGGCCGTGAA 57.281 38.095 27.15 20.99 41.92 3.18
244 245 3.719173 AAAGAAAAATTTCGGCCGTGA 57.281 38.095 27.15 15.52 41.92 4.35
245 246 4.048504 AGAAAAGAAAAATTTCGGCCGTG 58.951 39.130 27.15 0.00 41.92 4.94
246 247 4.316205 AGAAAAGAAAAATTTCGGCCGT 57.684 36.364 27.15 2.66 41.92 5.68
247 248 5.333035 GGAAAGAAAAGAAAAATTTCGGCCG 60.333 40.000 22.12 22.12 41.92 6.13
248 249 5.333035 CGGAAAGAAAAGAAAAATTTCGGCC 60.333 40.000 0.00 0.00 41.92 6.13
249 250 5.460748 TCGGAAAGAAAAGAAAAATTTCGGC 59.539 36.000 0.00 0.00 41.92 5.54
250 251 7.458038 TTCGGAAAGAAAAGAAAAATTTCGG 57.542 32.000 0.00 0.00 40.78 4.30
264 265 9.134734 GCAACATATATTTTGTTTCGGAAAGAA 57.865 29.630 8.78 8.78 35.18 2.52
265 266 8.300286 TGCAACATATATTTTGTTTCGGAAAGA 58.700 29.630 12.10 0.00 35.18 2.52
266 267 8.459521 TGCAACATATATTTTGTTTCGGAAAG 57.540 30.769 12.10 0.00 35.18 2.62
267 268 8.300286 TCTGCAACATATATTTTGTTTCGGAAA 58.700 29.630 12.10 0.00 34.27 3.13
268 269 7.821652 TCTGCAACATATATTTTGTTTCGGAA 58.178 30.769 12.10 0.00 34.27 4.30
269 270 7.384439 TCTGCAACATATATTTTGTTTCGGA 57.616 32.000 12.10 4.64 34.62 4.55
270 271 8.459521 TTTCTGCAACATATATTTTGTTTCGG 57.540 30.769 12.10 2.61 35.18 4.30
282 283 9.545105 TTGTTTCAAAAGATTTCTGCAACATAT 57.455 25.926 0.00 0.00 0.00 1.78
283 284 8.939201 TTGTTTCAAAAGATTTCTGCAACATA 57.061 26.923 0.00 0.00 0.00 2.29
284 285 7.765360 TCTTGTTTCAAAAGATTTCTGCAACAT 59.235 29.630 0.00 0.00 0.00 2.71
285 286 7.063308 GTCTTGTTTCAAAAGATTTCTGCAACA 59.937 33.333 0.00 0.00 36.14 3.33
286 287 7.394099 GTCTTGTTTCAAAAGATTTCTGCAAC 58.606 34.615 0.00 0.00 36.14 4.17
287 288 6.534793 GGTCTTGTTTCAAAAGATTTCTGCAA 59.465 34.615 0.00 0.00 36.14 4.08
288 289 6.042143 GGTCTTGTTTCAAAAGATTTCTGCA 58.958 36.000 0.00 0.00 36.14 4.41
289 290 5.463392 GGGTCTTGTTTCAAAAGATTTCTGC 59.537 40.000 0.00 0.00 36.14 4.26
290 291 5.687285 CGGGTCTTGTTTCAAAAGATTTCTG 59.313 40.000 0.00 0.00 36.14 3.02
291 292 5.592688 TCGGGTCTTGTTTCAAAAGATTTCT 59.407 36.000 0.00 0.00 36.14 2.52
292 293 5.827666 TCGGGTCTTGTTTCAAAAGATTTC 58.172 37.500 0.00 0.00 36.14 2.17
293 294 5.359860 ACTCGGGTCTTGTTTCAAAAGATTT 59.640 36.000 0.00 0.00 36.14 2.17
294 295 4.887655 ACTCGGGTCTTGTTTCAAAAGATT 59.112 37.500 0.00 0.00 36.14 2.40
295 296 4.461198 ACTCGGGTCTTGTTTCAAAAGAT 58.539 39.130 0.00 0.00 36.14 2.40
296 297 3.881220 ACTCGGGTCTTGTTTCAAAAGA 58.119 40.909 0.00 0.00 0.00 2.52
297 298 4.351192 CAACTCGGGTCTTGTTTCAAAAG 58.649 43.478 0.00 0.00 0.00 2.27
298 299 3.428316 GCAACTCGGGTCTTGTTTCAAAA 60.428 43.478 0.00 0.00 0.00 2.44
299 300 2.098443 GCAACTCGGGTCTTGTTTCAAA 59.902 45.455 0.00 0.00 0.00 2.69
300 301 1.673920 GCAACTCGGGTCTTGTTTCAA 59.326 47.619 0.00 0.00 0.00 2.69
301 302 1.305201 GCAACTCGGGTCTTGTTTCA 58.695 50.000 0.00 0.00 0.00 2.69
302 303 1.264288 CTGCAACTCGGGTCTTGTTTC 59.736 52.381 0.00 0.00 0.00 2.78
303 304 1.134220 TCTGCAACTCGGGTCTTGTTT 60.134 47.619 0.00 0.00 0.00 2.83
304 305 0.468226 TCTGCAACTCGGGTCTTGTT 59.532 50.000 0.00 0.00 0.00 2.83
305 306 0.468226 TTCTGCAACTCGGGTCTTGT 59.532 50.000 0.00 0.00 0.00 3.16
306 307 1.593196 TTTCTGCAACTCGGGTCTTG 58.407 50.000 0.00 0.00 0.00 3.02
307 308 2.158813 TCTTTTCTGCAACTCGGGTCTT 60.159 45.455 0.00 0.00 0.00 3.01
308 309 1.416401 TCTTTTCTGCAACTCGGGTCT 59.584 47.619 0.00 0.00 0.00 3.85
309 310 1.878953 TCTTTTCTGCAACTCGGGTC 58.121 50.000 0.00 0.00 0.00 4.46
310 311 2.341846 TTCTTTTCTGCAACTCGGGT 57.658 45.000 0.00 0.00 0.00 5.28
311 312 3.708563 TTTTCTTTTCTGCAACTCGGG 57.291 42.857 0.00 0.00 0.00 5.14
312 313 4.672409 AGTTTTTCTTTTCTGCAACTCGG 58.328 39.130 0.00 0.00 0.00 4.63
313 314 5.799936 TGAAGTTTTTCTTTTCTGCAACTCG 59.200 36.000 0.00 0.00 36.40 4.18
314 315 6.035005 GGTGAAGTTTTTCTTTTCTGCAACTC 59.965 38.462 0.00 0.00 36.40 3.01
315 316 5.869344 GGTGAAGTTTTTCTTTTCTGCAACT 59.131 36.000 0.00 0.00 36.40 3.16
316 317 5.637387 TGGTGAAGTTTTTCTTTTCTGCAAC 59.363 36.000 0.00 0.00 36.40 4.17
317 318 5.788450 TGGTGAAGTTTTTCTTTTCTGCAA 58.212 33.333 0.00 0.00 36.40 4.08
318 319 5.398603 TGGTGAAGTTTTTCTTTTCTGCA 57.601 34.783 0.00 0.00 36.40 4.41
319 320 5.173854 CGATGGTGAAGTTTTTCTTTTCTGC 59.826 40.000 0.00 0.00 36.40 4.26
320 321 6.494842 TCGATGGTGAAGTTTTTCTTTTCTG 58.505 36.000 0.00 0.00 36.40 3.02
321 322 6.693315 TCGATGGTGAAGTTTTTCTTTTCT 57.307 33.333 0.00 0.00 36.40 2.52
322 323 7.647715 TGATTCGATGGTGAAGTTTTTCTTTTC 59.352 33.333 0.00 0.00 36.40 2.29
323 324 7.488322 TGATTCGATGGTGAAGTTTTTCTTTT 58.512 30.769 0.00 0.00 36.40 2.27
324 325 7.038154 TGATTCGATGGTGAAGTTTTTCTTT 57.962 32.000 0.00 0.00 36.40 2.52
325 326 6.633500 TGATTCGATGGTGAAGTTTTTCTT 57.367 33.333 0.00 0.00 39.32 2.52
326 327 6.824305 ATGATTCGATGGTGAAGTTTTTCT 57.176 33.333 0.00 0.00 34.31 2.52
327 328 7.873739 AAATGATTCGATGGTGAAGTTTTTC 57.126 32.000 0.00 0.00 0.00 2.29
328 329 8.661352 AAAAATGATTCGATGGTGAAGTTTTT 57.339 26.923 0.00 0.00 32.34 1.94
354 355 8.833493 CGGGACTAGTTTTAGAAAGAAAGAAAA 58.167 33.333 0.00 0.00 0.00 2.29
355 356 7.989170 ACGGGACTAGTTTTAGAAAGAAAGAAA 59.011 33.333 0.00 0.00 0.00 2.52
356 357 7.503549 ACGGGACTAGTTTTAGAAAGAAAGAA 58.496 34.615 0.00 0.00 0.00 2.52
357 358 7.059202 ACGGGACTAGTTTTAGAAAGAAAGA 57.941 36.000 0.00 0.00 0.00 2.52
358 359 8.999220 ATACGGGACTAGTTTTAGAAAGAAAG 57.001 34.615 0.00 0.00 0.00 2.62
359 360 9.211485 CAATACGGGACTAGTTTTAGAAAGAAA 57.789 33.333 0.00 0.00 0.00 2.52
360 361 7.332678 GCAATACGGGACTAGTTTTAGAAAGAA 59.667 37.037 0.00 0.00 0.00 2.52
361 362 6.815142 GCAATACGGGACTAGTTTTAGAAAGA 59.185 38.462 0.00 0.00 0.00 2.52
362 363 6.592607 TGCAATACGGGACTAGTTTTAGAAAG 59.407 38.462 0.00 0.00 0.00 2.62
363 364 6.465948 TGCAATACGGGACTAGTTTTAGAAA 58.534 36.000 0.00 0.00 0.00 2.52
364 365 6.040209 TGCAATACGGGACTAGTTTTAGAA 57.960 37.500 0.00 0.00 0.00 2.10
365 366 5.419788 TCTGCAATACGGGACTAGTTTTAGA 59.580 40.000 0.00 0.00 0.00 2.10
366 367 5.657474 TCTGCAATACGGGACTAGTTTTAG 58.343 41.667 0.00 0.00 0.00 1.85
367 368 5.664294 TCTGCAATACGGGACTAGTTTTA 57.336 39.130 0.00 0.00 0.00 1.52
368 369 4.546829 TCTGCAATACGGGACTAGTTTT 57.453 40.909 0.00 0.00 0.00 2.43
369 370 4.546829 TTCTGCAATACGGGACTAGTTT 57.453 40.909 0.00 0.00 0.00 2.66
370 371 4.546829 TTTCTGCAATACGGGACTAGTT 57.453 40.909 0.00 0.00 0.00 2.24
371 372 4.406003 AGATTTCTGCAATACGGGACTAGT 59.594 41.667 0.00 0.00 0.00 2.57
372 373 4.950050 AGATTTCTGCAATACGGGACTAG 58.050 43.478 0.00 0.00 0.00 2.57
373 374 5.597182 ACTAGATTTCTGCAATACGGGACTA 59.403 40.000 0.00 0.00 0.00 2.59
374 375 3.914426 AGATTTCTGCAATACGGGACT 57.086 42.857 0.00 0.00 0.00 3.85
375 376 4.508124 CACTAGATTTCTGCAATACGGGAC 59.492 45.833 0.00 0.00 0.00 4.46
376 377 4.404394 TCACTAGATTTCTGCAATACGGGA 59.596 41.667 0.00 0.00 0.00 5.14
377 378 4.693283 TCACTAGATTTCTGCAATACGGG 58.307 43.478 0.00 0.00 0.00 5.28
378 379 6.478588 GTTTCACTAGATTTCTGCAATACGG 58.521 40.000 0.00 0.00 0.00 4.02
379 380 6.178507 CGTTTCACTAGATTTCTGCAATACG 58.821 40.000 0.00 0.00 0.00 3.06
380 381 6.456988 CCCGTTTCACTAGATTTCTGCAATAC 60.457 42.308 0.00 0.00 0.00 1.89
381 382 5.584649 CCCGTTTCACTAGATTTCTGCAATA 59.415 40.000 0.00 0.00 0.00 1.90
382 383 4.396166 CCCGTTTCACTAGATTTCTGCAAT 59.604 41.667 0.00 0.00 0.00 3.56
383 384 3.751175 CCCGTTTCACTAGATTTCTGCAA 59.249 43.478 0.00 0.00 0.00 4.08
384 385 3.007506 TCCCGTTTCACTAGATTTCTGCA 59.992 43.478 0.00 0.00 0.00 4.41
385 386 3.596214 TCCCGTTTCACTAGATTTCTGC 58.404 45.455 0.00 0.00 0.00 4.26
386 387 4.811557 GGATCCCGTTTCACTAGATTTCTG 59.188 45.833 0.00 0.00 0.00 3.02
387 388 4.717280 AGGATCCCGTTTCACTAGATTTCT 59.283 41.667 8.55 0.00 0.00 2.52
388 389 5.024785 AGGATCCCGTTTCACTAGATTTC 57.975 43.478 8.55 0.00 0.00 2.17
389 390 5.437191 AAGGATCCCGTTTCACTAGATTT 57.563 39.130 8.55 0.00 0.00 2.17
390 391 6.749036 ATAAGGATCCCGTTTCACTAGATT 57.251 37.500 8.55 0.00 0.00 2.40
391 392 6.525629 CAATAAGGATCCCGTTTCACTAGAT 58.474 40.000 8.55 0.00 0.00 1.98
392 393 5.684030 GCAATAAGGATCCCGTTTCACTAGA 60.684 44.000 8.55 0.00 0.00 2.43
393 394 4.511826 GCAATAAGGATCCCGTTTCACTAG 59.488 45.833 8.55 0.00 0.00 2.57
394 395 4.080807 TGCAATAAGGATCCCGTTTCACTA 60.081 41.667 8.55 0.00 0.00 2.74
395 396 3.279434 GCAATAAGGATCCCGTTTCACT 58.721 45.455 8.55 0.00 0.00 3.41
396 397 3.013921 TGCAATAAGGATCCCGTTTCAC 58.986 45.455 8.55 0.00 0.00 3.18
397 398 3.358111 TGCAATAAGGATCCCGTTTCA 57.642 42.857 8.55 0.00 0.00 2.69
398 399 3.945285 TCTTGCAATAAGGATCCCGTTTC 59.055 43.478 8.55 0.00 0.00 2.78
399 400 3.963129 TCTTGCAATAAGGATCCCGTTT 58.037 40.909 8.55 0.00 0.00 3.60
400 401 3.644966 TCTTGCAATAAGGATCCCGTT 57.355 42.857 8.55 0.00 0.00 4.44
401 402 3.644966 TTCTTGCAATAAGGATCCCGT 57.355 42.857 8.55 0.00 0.00 5.28
402 403 4.981806 TTTTCTTGCAATAAGGATCCCG 57.018 40.909 8.55 0.00 0.00 5.14
403 404 6.153510 AGTCTTTTTCTTGCAATAAGGATCCC 59.846 38.462 8.55 0.00 0.00 3.85
404 405 7.031975 CAGTCTTTTTCTTGCAATAAGGATCC 58.968 38.462 2.48 2.48 0.00 3.36
405 406 7.031975 CCAGTCTTTTTCTTGCAATAAGGATC 58.968 38.462 0.00 0.00 0.00 3.36
406 407 6.573094 GCCAGTCTTTTTCTTGCAATAAGGAT 60.573 38.462 0.00 0.00 0.00 3.24
407 408 5.278957 GCCAGTCTTTTTCTTGCAATAAGGA 60.279 40.000 0.00 0.00 0.00 3.36
408 409 4.925646 GCCAGTCTTTTTCTTGCAATAAGG 59.074 41.667 0.00 0.00 0.00 2.69
409 410 4.925646 GGCCAGTCTTTTTCTTGCAATAAG 59.074 41.667 0.00 2.19 0.00 1.73
410 411 4.558496 CGGCCAGTCTTTTTCTTGCAATAA 60.558 41.667 2.24 0.00 0.00 1.40
411 412 3.057596 CGGCCAGTCTTTTTCTTGCAATA 60.058 43.478 2.24 0.00 0.00 1.90
412 413 2.288395 CGGCCAGTCTTTTTCTTGCAAT 60.288 45.455 2.24 0.00 0.00 3.56
413 414 1.066908 CGGCCAGTCTTTTTCTTGCAA 59.933 47.619 2.24 0.00 0.00 4.08
414 415 0.667993 CGGCCAGTCTTTTTCTTGCA 59.332 50.000 2.24 0.00 0.00 4.08
415 416 0.668535 ACGGCCAGTCTTTTTCTTGC 59.331 50.000 2.24 0.00 0.00 4.01
416 417 1.676006 ACACGGCCAGTCTTTTTCTTG 59.324 47.619 2.24 0.00 0.00 3.02
417 418 1.676006 CACACGGCCAGTCTTTTTCTT 59.324 47.619 2.24 0.00 0.00 2.52
418 419 1.134220 TCACACGGCCAGTCTTTTTCT 60.134 47.619 2.24 0.00 0.00 2.52
419 420 1.264288 CTCACACGGCCAGTCTTTTTC 59.736 52.381 2.24 0.00 0.00 2.29
420 421 1.134220 TCTCACACGGCCAGTCTTTTT 60.134 47.619 2.24 0.00 0.00 1.94
421 422 0.468226 TCTCACACGGCCAGTCTTTT 59.532 50.000 2.24 0.00 0.00 2.27
422 423 0.249911 GTCTCACACGGCCAGTCTTT 60.250 55.000 2.24 0.00 0.00 2.52
423 424 1.115930 AGTCTCACACGGCCAGTCTT 61.116 55.000 2.24 0.00 0.00 3.01
424 425 1.531840 AGTCTCACACGGCCAGTCT 60.532 57.895 2.24 0.00 0.00 3.24
425 426 1.373497 CAGTCTCACACGGCCAGTC 60.373 63.158 2.24 0.00 0.00 3.51
426 427 1.832608 TCAGTCTCACACGGCCAGT 60.833 57.895 2.24 0.00 0.00 4.00
427 428 1.373497 GTCAGTCTCACACGGCCAG 60.373 63.158 2.24 0.00 0.00 4.85
428 429 1.399744 AAGTCAGTCTCACACGGCCA 61.400 55.000 2.24 0.00 0.00 5.36
429 430 0.946221 CAAGTCAGTCTCACACGGCC 60.946 60.000 0.00 0.00 0.00 6.13
430 431 0.249489 ACAAGTCAGTCTCACACGGC 60.249 55.000 0.00 0.00 0.00 5.68
431 432 3.502920 GATACAAGTCAGTCTCACACGG 58.497 50.000 0.00 0.00 0.00 4.94
432 433 3.502920 GGATACAAGTCAGTCTCACACG 58.497 50.000 0.00 0.00 0.00 4.49
445 446 2.572095 TCGGCCACGCTGGATACAAG 62.572 60.000 2.24 0.00 43.22 3.16
446 447 1.966901 ATCGGCCACGCTGGATACAA 61.967 55.000 2.24 0.00 43.22 2.41
447 448 1.966901 AATCGGCCACGCTGGATACA 61.967 55.000 2.24 0.00 40.96 2.29
448 449 1.227556 AATCGGCCACGCTGGATAC 60.228 57.895 2.24 0.00 40.96 2.24
449 450 1.227527 CAATCGGCCACGCTGGATA 60.228 57.895 2.24 0.00 40.96 2.59
450 451 2.514592 CAATCGGCCACGCTGGAT 60.515 61.111 2.24 0.00 40.96 3.41
451 452 3.664025 CTCAATCGGCCACGCTGGA 62.664 63.158 2.24 0.00 40.96 3.86
452 453 3.197790 CTCAATCGGCCACGCTGG 61.198 66.667 2.24 0.25 41.55 4.85
453 454 3.869272 GCTCAATCGGCCACGCTG 61.869 66.667 2.24 0.00 40.69 5.18
454 455 4.393155 TGCTCAATCGGCCACGCT 62.393 61.111 2.24 0.00 40.69 5.07
455 456 3.869272 CTGCTCAATCGGCCACGC 61.869 66.667 2.24 0.00 40.69 5.34
456 457 2.930385 ATCCTGCTCAATCGGCCACG 62.930 60.000 2.24 0.00 42.74 4.94
457 458 0.749454 AATCCTGCTCAATCGGCCAC 60.749 55.000 2.24 0.00 0.00 5.01
458 459 0.749091 CAATCCTGCTCAATCGGCCA 60.749 55.000 2.24 0.00 0.00 5.36
459 460 0.464373 TCAATCCTGCTCAATCGGCC 60.464 55.000 0.00 0.00 0.00 6.13
460 461 1.534595 GATCAATCCTGCTCAATCGGC 59.465 52.381 0.00 0.00 0.00 5.54
461 462 2.806818 CAGATCAATCCTGCTCAATCGG 59.193 50.000 0.00 0.00 0.00 4.18
462 463 3.493877 GTCAGATCAATCCTGCTCAATCG 59.506 47.826 0.00 0.00 0.00 3.34
463 464 3.493877 CGTCAGATCAATCCTGCTCAATC 59.506 47.826 0.00 0.00 0.00 2.67
464 465 3.464907 CGTCAGATCAATCCTGCTCAAT 58.535 45.455 0.00 0.00 0.00 2.57
465 466 2.419159 CCGTCAGATCAATCCTGCTCAA 60.419 50.000 0.00 0.00 0.00 3.02
466 467 1.137675 CCGTCAGATCAATCCTGCTCA 59.862 52.381 0.00 0.00 0.00 4.26
467 468 1.137872 ACCGTCAGATCAATCCTGCTC 59.862 52.381 0.00 0.00 0.00 4.26
468 469 1.198713 ACCGTCAGATCAATCCTGCT 58.801 50.000 0.00 0.00 0.00 4.24
469 470 2.029838 AACCGTCAGATCAATCCTGC 57.970 50.000 0.00 0.00 0.00 4.85
470 471 3.496130 GCATAACCGTCAGATCAATCCTG 59.504 47.826 0.00 0.00 0.00 3.86
471 472 3.134623 TGCATAACCGTCAGATCAATCCT 59.865 43.478 0.00 0.00 0.00 3.24
472 473 3.466836 TGCATAACCGTCAGATCAATCC 58.533 45.455 0.00 0.00 0.00 3.01
473 474 4.553547 GCTTGCATAACCGTCAGATCAATC 60.554 45.833 0.00 0.00 0.00 2.67
474 475 3.313526 GCTTGCATAACCGTCAGATCAAT 59.686 43.478 0.00 0.00 0.00 2.57
475 476 2.677836 GCTTGCATAACCGTCAGATCAA 59.322 45.455 0.00 0.00 0.00 2.57
476 477 2.279741 GCTTGCATAACCGTCAGATCA 58.720 47.619 0.00 0.00 0.00 2.92
477 478 1.258982 CGCTTGCATAACCGTCAGATC 59.741 52.381 0.00 0.00 0.00 2.75
478 479 1.290203 CGCTTGCATAACCGTCAGAT 58.710 50.000 0.00 0.00 0.00 2.90
479 480 0.739462 CCGCTTGCATAACCGTCAGA 60.739 55.000 0.00 0.00 0.00 3.27
480 481 1.715585 CCGCTTGCATAACCGTCAG 59.284 57.895 0.00 0.00 0.00 3.51
481 482 2.395360 GCCGCTTGCATAACCGTCA 61.395 57.895 0.00 0.00 40.77 4.35
482 483 2.403586 GCCGCTTGCATAACCGTC 59.596 61.111 0.00 0.00 40.77 4.79
515 516 3.346631 CTTTGGCCGGCTGATGCAC 62.347 63.158 28.56 8.18 41.91 4.57
516 517 3.063704 CTTTGGCCGGCTGATGCA 61.064 61.111 28.56 12.88 41.91 3.96
517 518 3.830192 CCTTTGGCCGGCTGATGC 61.830 66.667 28.56 9.87 38.76 3.91
518 519 0.679640 TTACCTTTGGCCGGCTGATG 60.680 55.000 28.56 16.17 0.00 3.07
519 520 0.394352 CTTACCTTTGGCCGGCTGAT 60.394 55.000 28.56 8.85 0.00 2.90
520 521 1.002624 CTTACCTTTGGCCGGCTGA 60.003 57.895 28.56 12.69 0.00 4.26
521 522 2.046285 CCTTACCTTTGGCCGGCTG 61.046 63.158 28.56 13.87 0.00 4.85
522 523 2.076597 AACCTTACCTTTGGCCGGCT 62.077 55.000 28.56 7.78 0.00 5.52
523 524 1.183030 AAACCTTACCTTTGGCCGGC 61.183 55.000 21.18 21.18 0.00 6.13
524 525 1.271379 GAAAACCTTACCTTTGGCCGG 59.729 52.381 0.00 0.00 0.00 6.13
525 526 1.271379 GGAAAACCTTACCTTTGGCCG 59.729 52.381 0.00 0.00 0.00 6.13
526 527 1.621814 GGGAAAACCTTACCTTTGGCC 59.378 52.381 0.00 0.00 31.91 5.36
538 539 7.011202 GTCGAGTGATTTATTCTAGGGAAAACC 59.989 40.741 0.00 0.00 40.67 3.27
539 540 7.011202 GGTCGAGTGATTTATTCTAGGGAAAAC 59.989 40.741 0.00 0.00 34.90 2.43
540 541 7.046033 GGTCGAGTGATTTATTCTAGGGAAAA 58.954 38.462 0.00 0.00 34.90 2.29
541 542 6.155565 TGGTCGAGTGATTTATTCTAGGGAAA 59.844 38.462 0.00 0.00 34.90 3.13
542 543 5.659525 TGGTCGAGTGATTTATTCTAGGGAA 59.340 40.000 0.00 0.00 35.78 3.97
543 544 5.068723 GTGGTCGAGTGATTTATTCTAGGGA 59.931 44.000 0.00 0.00 0.00 4.20
544 545 5.163447 TGTGGTCGAGTGATTTATTCTAGGG 60.163 44.000 0.00 0.00 0.00 3.53
545 546 5.902681 TGTGGTCGAGTGATTTATTCTAGG 58.097 41.667 0.00 0.00 0.00 3.02
546 547 7.492669 ACATTGTGGTCGAGTGATTTATTCTAG 59.507 37.037 0.00 0.00 0.00 2.43
547 548 7.327975 ACATTGTGGTCGAGTGATTTATTCTA 58.672 34.615 0.00 0.00 0.00 2.10
548 549 6.173339 ACATTGTGGTCGAGTGATTTATTCT 58.827 36.000 0.00 0.00 0.00 2.40
549 550 6.422776 ACATTGTGGTCGAGTGATTTATTC 57.577 37.500 0.00 0.00 0.00 1.75
550 551 6.538742 CCTACATTGTGGTCGAGTGATTTATT 59.461 38.462 0.00 0.00 0.00 1.40
551 552 6.049149 CCTACATTGTGGTCGAGTGATTTAT 58.951 40.000 0.00 0.00 0.00 1.40
552 553 5.416083 CCTACATTGTGGTCGAGTGATTTA 58.584 41.667 0.00 0.00 0.00 1.40
553 554 4.253685 CCTACATTGTGGTCGAGTGATTT 58.746 43.478 0.00 0.00 0.00 2.17
554 555 3.861840 CCTACATTGTGGTCGAGTGATT 58.138 45.455 0.00 0.00 0.00 2.57
555 556 2.418746 GCCTACATTGTGGTCGAGTGAT 60.419 50.000 0.00 0.00 0.00 3.06
556 557 1.067142 GCCTACATTGTGGTCGAGTGA 60.067 52.381 0.00 0.00 0.00 3.41
557 558 1.066858 AGCCTACATTGTGGTCGAGTG 60.067 52.381 0.00 0.00 0.00 3.51
558 559 1.204941 GAGCCTACATTGTGGTCGAGT 59.795 52.381 0.00 0.00 0.00 4.18
559 560 1.471676 GGAGCCTACATTGTGGTCGAG 60.472 57.143 0.00 0.00 0.00 4.04
560 561 0.535335 GGAGCCTACATTGTGGTCGA 59.465 55.000 0.00 0.00 0.00 4.20
561 562 0.537188 AGGAGCCTACATTGTGGTCG 59.463 55.000 0.00 0.00 0.00 4.79
562 563 2.359900 CAAGGAGCCTACATTGTGGTC 58.640 52.381 0.00 0.00 0.00 4.02
563 564 1.614317 GCAAGGAGCCTACATTGTGGT 60.614 52.381 0.00 0.00 37.23 4.16
564 565 1.098050 GCAAGGAGCCTACATTGTGG 58.902 55.000 0.00 0.00 37.23 4.17
565 566 0.729116 CGCAAGGAGCCTACATTGTG 59.271 55.000 0.00 0.00 41.38 3.33
566 567 0.324943 ACGCAAGGAGCCTACATTGT 59.675 50.000 0.00 0.00 46.39 2.71
567 568 0.729116 CACGCAAGGAGCCTACATTG 59.271 55.000 0.00 0.00 46.39 2.82
568 569 0.613260 TCACGCAAGGAGCCTACATT 59.387 50.000 0.00 0.00 46.39 2.71
569 570 0.108138 GTCACGCAAGGAGCCTACAT 60.108 55.000 0.00 0.00 46.39 2.29
570 571 1.292223 GTCACGCAAGGAGCCTACA 59.708 57.895 0.00 0.00 46.39 2.74
571 572 1.014564 GTGTCACGCAAGGAGCCTAC 61.015 60.000 0.00 0.00 46.39 3.18
572 573 1.292223 GTGTCACGCAAGGAGCCTA 59.708 57.895 0.00 0.00 46.39 3.93
573 574 2.031163 GTGTCACGCAAGGAGCCT 59.969 61.111 0.00 0.00 46.39 4.58
574 575 3.050275 GGTGTCACGCAAGGAGCC 61.050 66.667 0.00 0.00 46.39 4.70
575 576 3.414700 CGGTGTCACGCAAGGAGC 61.415 66.667 0.00 0.00 46.39 4.70
576 577 1.078759 GATCGGTGTCACGCAAGGAG 61.079 60.000 0.00 0.00 46.39 3.69
577 578 1.080093 GATCGGTGTCACGCAAGGA 60.080 57.895 0.00 0.00 46.39 3.36
578 579 1.354337 CTGATCGGTGTCACGCAAGG 61.354 60.000 0.00 0.00 46.39 3.61
580 581 2.027073 GCTGATCGGTGTCACGCAA 61.027 57.895 2.89 0.00 0.00 4.85
581 582 2.432456 GCTGATCGGTGTCACGCA 60.432 61.111 2.89 0.00 0.00 5.24
582 583 3.545481 CGCTGATCGGTGTCACGC 61.545 66.667 6.95 0.00 33.78 5.34
583 584 2.126463 ACGCTGATCGGTGTCACG 60.126 61.111 15.10 5.97 43.86 4.35
584 585 0.798771 GAGACGCTGATCGGTGTCAC 60.799 60.000 37.11 30.69 45.75 3.67
585 586 1.506718 GAGACGCTGATCGGTGTCA 59.493 57.895 37.11 1.06 45.75 3.58
586 587 1.226717 GGAGACGCTGATCGGTGTC 60.227 63.158 32.08 32.08 44.28 3.67
587 588 1.658686 GAGGAGACGCTGATCGGTGT 61.659 60.000 20.55 20.55 43.86 4.16
588 589 1.064946 GAGGAGACGCTGATCGGTG 59.935 63.158 13.64 13.64 43.86 4.94
589 590 0.681564 AAGAGGAGACGCTGATCGGT 60.682 55.000 2.89 0.00 40.78 4.69
590 591 0.030101 GAAGAGGAGACGCTGATCGG 59.970 60.000 0.00 0.00 40.78 4.18
591 592 0.030101 GGAAGAGGAGACGCTGATCG 59.970 60.000 0.00 0.00 40.78 3.69
592 593 1.398692 AGGAAGAGGAGACGCTGATC 58.601 55.000 0.00 0.00 40.78 2.92
593 594 1.859302 AAGGAAGAGGAGACGCTGAT 58.141 50.000 0.00 0.00 40.78 2.90
594 595 1.633774 AAAGGAAGAGGAGACGCTGA 58.366 50.000 0.00 0.00 40.78 4.26
595 596 2.464157 AAAAGGAAGAGGAGACGCTG 57.536 50.000 0.00 0.00 40.78 5.18
613 614 3.007398 GGCAGACCAGAGAGAGAGAAAAA 59.993 47.826 0.00 0.00 35.26 1.94
614 615 2.564947 GGCAGACCAGAGAGAGAGAAAA 59.435 50.000 0.00 0.00 35.26 2.29
615 616 2.175202 GGCAGACCAGAGAGAGAGAAA 58.825 52.381 0.00 0.00 35.26 2.52
616 617 1.357420 AGGCAGACCAGAGAGAGAGAA 59.643 52.381 0.00 0.00 39.06 2.87
617 618 0.998928 AGGCAGACCAGAGAGAGAGA 59.001 55.000 0.00 0.00 39.06 3.10
618 619 1.105457 CAGGCAGACCAGAGAGAGAG 58.895 60.000 0.00 0.00 39.06 3.20
619 620 0.407528 ACAGGCAGACCAGAGAGAGA 59.592 55.000 0.00 0.00 39.06 3.10
620 621 2.023673 CTACAGGCAGACCAGAGAGAG 58.976 57.143 0.00 0.00 39.06 3.20
621 622 1.957591 GCTACAGGCAGACCAGAGAGA 60.958 57.143 0.00 0.00 41.35 3.10
622 623 0.459489 GCTACAGGCAGACCAGAGAG 59.541 60.000 0.00 0.00 41.35 3.20
623 624 1.315981 CGCTACAGGCAGACCAGAGA 61.316 60.000 0.00 0.00 41.91 3.10
624 625 1.140589 CGCTACAGGCAGACCAGAG 59.859 63.158 0.00 0.00 41.91 3.35
625 626 1.595993 GACGCTACAGGCAGACCAGA 61.596 60.000 0.00 0.00 41.91 3.86
626 627 1.153745 GACGCTACAGGCAGACCAG 60.154 63.158 0.00 0.00 41.91 4.00
627 628 2.646175 GGACGCTACAGGCAGACCA 61.646 63.158 0.00 0.00 41.91 4.02
628 629 2.184579 GGACGCTACAGGCAGACC 59.815 66.667 0.00 0.00 41.91 3.85
629 630 1.139947 GAGGACGCTACAGGCAGAC 59.860 63.158 0.00 0.00 41.91 3.51
630 631 0.255033 TAGAGGACGCTACAGGCAGA 59.745 55.000 0.00 0.00 41.91 4.26
631 632 1.000827 CATAGAGGACGCTACAGGCAG 60.001 57.143 0.00 0.00 41.91 4.85
632 633 1.032794 CATAGAGGACGCTACAGGCA 58.967 55.000 0.00 0.00 41.91 4.75
633 634 0.319125 GCATAGAGGACGCTACAGGC 60.319 60.000 0.00 0.00 37.64 4.85
634 635 1.000827 CAGCATAGAGGACGCTACAGG 60.001 57.143 0.00 0.00 33.82 4.00
635 636 1.000827 CCAGCATAGAGGACGCTACAG 60.001 57.143 0.00 0.00 33.82 2.74
636 637 1.032794 CCAGCATAGAGGACGCTACA 58.967 55.000 0.00 0.00 33.82 2.74
637 638 1.268352 CTCCAGCATAGAGGACGCTAC 59.732 57.143 0.00 0.00 33.82 3.58
638 639 1.610363 CTCCAGCATAGAGGACGCTA 58.390 55.000 0.00 0.00 33.82 4.26
639 640 2.424474 CTCCAGCATAGAGGACGCT 58.576 57.895 0.00 0.00 36.10 5.07
651 652 3.200593 CACAGCGATGCCTCCAGC 61.201 66.667 0.00 0.00 44.14 4.85
652 653 2.513204 CCACAGCGATGCCTCCAG 60.513 66.667 0.00 0.00 0.00 3.86
653 654 4.783621 GCCACAGCGATGCCTCCA 62.784 66.667 0.00 0.00 0.00 3.86
654 655 4.479993 AGCCACAGCGATGCCTCC 62.480 66.667 0.00 0.00 46.67 4.30
655 656 3.200593 CAGCCACAGCGATGCCTC 61.201 66.667 0.00 0.00 46.67 4.70
666 667 4.912395 TTGTGTGGGGGCAGCCAC 62.912 66.667 15.19 10.34 37.44 5.01
667 668 4.912395 GTTGTGTGGGGGCAGCCA 62.912 66.667 15.19 0.00 0.00 4.75
674 675 2.684192 TTACTGGGCGTTGTGTGGGG 62.684 60.000 0.00 0.00 0.00 4.96
675 676 0.820074 TTTACTGGGCGTTGTGTGGG 60.820 55.000 0.00 0.00 0.00 4.61
676 677 1.243902 ATTTACTGGGCGTTGTGTGG 58.756 50.000 0.00 0.00 0.00 4.17
677 678 3.049206 CAAATTTACTGGGCGTTGTGTG 58.951 45.455 0.00 0.00 0.00 3.82
678 679 2.035321 CCAAATTTACTGGGCGTTGTGT 59.965 45.455 0.00 0.00 0.00 3.72
679 680 2.671596 CCAAATTTACTGGGCGTTGTG 58.328 47.619 0.00 0.00 0.00 3.33
680 681 1.000394 GCCAAATTTACTGGGCGTTGT 60.000 47.619 1.86 0.00 36.58 3.32
681 682 1.708822 GCCAAATTTACTGGGCGTTG 58.291 50.000 1.86 0.00 36.58 4.10
686 687 4.522722 TTTTACGGCCAAATTTACTGGG 57.477 40.909 2.24 0.00 34.25 4.45
687 688 5.534407 ACTTTTTACGGCCAAATTTACTGG 58.466 37.500 2.24 0.00 36.99 4.00
688 689 9.498307 CTATACTTTTTACGGCCAAATTTACTG 57.502 33.333 2.24 0.00 0.00 2.74
689 690 9.452287 TCTATACTTTTTACGGCCAAATTTACT 57.548 29.630 2.24 0.00 0.00 2.24
690 691 9.494479 GTCTATACTTTTTACGGCCAAATTTAC 57.506 33.333 2.24 0.00 0.00 2.01
691 692 9.228949 TGTCTATACTTTTTACGGCCAAATTTA 57.771 29.630 2.24 0.00 0.00 1.40
712 713 7.175293 AGTGGTTTGTGTTAGTGTTTTTGTCTA 59.825 33.333 0.00 0.00 0.00 2.59
714 715 6.153756 AGTGGTTTGTGTTAGTGTTTTTGTC 58.846 36.000 0.00 0.00 0.00 3.18
716 717 6.642950 TCAAGTGGTTTGTGTTAGTGTTTTTG 59.357 34.615 0.00 0.00 38.01 2.44
720 721 5.650266 TGATCAAGTGGTTTGTGTTAGTGTT 59.350 36.000 0.00 0.00 38.01 3.32
721 722 5.065988 GTGATCAAGTGGTTTGTGTTAGTGT 59.934 40.000 0.00 0.00 38.01 3.55
722 723 5.065859 TGTGATCAAGTGGTTTGTGTTAGTG 59.934 40.000 0.00 0.00 38.01 2.74
723 724 5.189928 TGTGATCAAGTGGTTTGTGTTAGT 58.810 37.500 0.00 0.00 38.01 2.24
728 729 4.935702 ACATTGTGATCAAGTGGTTTGTG 58.064 39.130 0.00 0.00 38.01 3.33
737 738 3.276857 AGCAGCCTACATTGTGATCAAG 58.723 45.455 0.00 0.00 36.97 3.02
1008 1021 2.910688 AAAACGGCTGAGAGTGAAGA 57.089 45.000 0.00 0.00 0.00 2.87
1715 1732 1.379044 GAAGGACGACTCCCGGGTA 60.379 63.158 22.86 6.41 43.93 3.69
2063 2080 4.485834 TCGCCGTCGAACATCCCG 62.486 66.667 0.00 0.00 42.44 5.14
2334 2354 8.861086 GGGAAAAAGGAAGAAGAAAGATTAACT 58.139 33.333 0.00 0.00 0.00 2.24
2351 2372 2.115343 CTCCTTCGAGGGGAAAAAGG 57.885 55.000 14.38 1.05 38.47 3.11
2432 2457 1.464608 CACACGAAGTAACATGGCCTG 59.535 52.381 3.32 2.01 41.61 4.85
2583 2619 5.556915 CACACAGGAAAAAGATACTACCCA 58.443 41.667 0.00 0.00 0.00 4.51
2585 2621 5.001232 TGCACACAGGAAAAAGATACTACC 58.999 41.667 0.00 0.00 0.00 3.18
2586 2622 6.149474 ACATGCACACAGGAAAAAGATACTAC 59.851 38.462 0.00 0.00 0.00 2.73
2587 2623 6.149308 CACATGCACACAGGAAAAAGATACTA 59.851 38.462 0.00 0.00 0.00 1.82
2588 2624 5.048504 CACATGCACACAGGAAAAAGATACT 60.049 40.000 0.00 0.00 0.00 2.12
2718 2762 9.664332 TTAATCTCCTCGTGGATACTATACTAC 57.336 37.037 6.68 0.00 42.29 2.73
2719 2763 9.664332 GTTAATCTCCTCGTGGATACTATACTA 57.336 37.037 6.68 0.00 42.29 1.82
2721 2765 7.392673 TGGTTAATCTCCTCGTGGATACTATAC 59.607 40.741 6.68 2.16 42.29 1.47
2734 2778 3.553922 CGCAGGATCTGGTTAATCTCCTC 60.554 52.174 0.00 0.00 34.09 3.71
2792 2841 1.816074 TAAGTTTTTGCGCGATCCCT 58.184 45.000 12.10 0.00 0.00 4.20
2799 2848 5.511729 GTGATCCTGTAATAAGTTTTTGCGC 59.488 40.000 0.00 0.00 0.00 6.09
2871 2927 0.736325 CGTAGCCCGAACTCTTGGTG 60.736 60.000 0.00 0.00 39.56 4.17
2972 3035 1.135460 GTTCAGATGCTCTTGCTTGGC 60.135 52.381 0.00 0.00 40.48 4.52
2983 3046 2.447250 CAATGATGCACGTTCAGATGC 58.553 47.619 0.00 0.00 42.40 3.91
3156 3224 0.035152 TTTGGGACGAGCATGAGCAT 60.035 50.000 0.00 0.00 45.49 3.79
3157 3225 0.250684 TTTTGGGACGAGCATGAGCA 60.251 50.000 0.00 0.00 45.49 4.26
3158 3226 0.449388 CTTTTGGGACGAGCATGAGC 59.551 55.000 0.00 0.00 42.56 4.26
3159 3227 1.089920 CCTTTTGGGACGAGCATGAG 58.910 55.000 0.00 0.00 37.23 2.90
3160 3228 0.690192 TCCTTTTGGGACGAGCATGA 59.310 50.000 0.00 0.00 39.58 3.07
3161 3229 1.470098 CTTCCTTTTGGGACGAGCATG 59.530 52.381 0.00 0.00 45.03 4.06
3162 3230 1.614317 CCTTCCTTTTGGGACGAGCAT 60.614 52.381 0.00 0.00 45.03 3.79
3169 3243 2.316108 GACAAAGCCTTCCTTTTGGGA 58.684 47.619 2.54 0.00 41.75 4.37
3382 3471 0.760189 ACAACAAAGCTGCCCATGGT 60.760 50.000 11.73 0.00 0.00 3.55
3384 3473 1.504359 CAACAACAAAGCTGCCCATG 58.496 50.000 0.00 0.00 0.00 3.66
3401 3494 2.288666 GCACAGAACTCAAGTGACCAA 58.711 47.619 0.00 0.00 35.33 3.67
3431 3524 1.083489 CGGCGCATTAAAAGAGGACA 58.917 50.000 10.83 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.