Multiple sequence alignment - TraesCS5B01G234300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G234300 chr5B 100.000 8462 0 0 1 8462 412452841 412444380 0.000000e+00 15627.0
1 TraesCS5B01G234300 chr5B 100.000 28 0 0 1644 1671 192285787 192285814 1.500000e-02 52.8
2 TraesCS5B01G234300 chr5D 93.977 2806 94 20 4895 7635 351333270 351330475 0.000000e+00 4176.0
3 TraesCS5B01G234300 chr5D 95.549 1303 53 4 2553 3854 351335610 351334312 0.000000e+00 2080.0
4 TraesCS5B01G234300 chr5D 95.432 1007 36 6 873 1871 351337312 351336308 0.000000e+00 1596.0
5 TraesCS5B01G234300 chr5D 91.327 980 45 15 3864 4811 351334257 351333286 0.000000e+00 1303.0
6 TraesCS5B01G234300 chr5D 91.197 852 47 9 7634 8459 351330394 351329545 0.000000e+00 1133.0
7 TraesCS5B01G234300 chr5D 92.937 623 29 7 1872 2482 351336251 351335632 0.000000e+00 893.0
8 TraesCS5B01G234300 chr5D 89.524 630 25 11 124 723 351393681 351393063 0.000000e+00 760.0
9 TraesCS5B01G234300 chr5A 93.568 2332 87 15 4892 7173 451726544 451724226 0.000000e+00 3417.0
10 TraesCS5B01G234300 chr5A 93.706 1144 55 6 740 1876 451730816 451729683 0.000000e+00 1698.0
11 TraesCS5B01G234300 chr5A 91.561 1185 59 16 7165 8317 451724193 451723018 0.000000e+00 1596.0
12 TraesCS5B01G234300 chr5A 96.226 901 32 2 2571 3471 451728773 451727875 0.000000e+00 1474.0
13 TraesCS5B01G234300 chr5A 91.199 1034 59 15 3864 4875 451727554 451726531 0.000000e+00 1376.0
14 TraesCS5B01G234300 chr5A 90.955 597 32 13 127 723 451731376 451730802 0.000000e+00 784.0
15 TraesCS5B01G234300 chr5A 92.710 535 28 7 1969 2495 451729306 451728775 0.000000e+00 761.0
16 TraesCS5B01G234300 chr5A 94.265 279 14 2 3576 3854 451727878 451727602 7.850000e-115 425.0
17 TraesCS5B01G234300 chr5A 95.570 158 7 0 8302 8459 451721597 451721440 3.920000e-63 254.0
18 TraesCS5B01G234300 chr5A 99.000 100 1 0 1872 1971 451729563 451729464 6.750000e-41 180.0
19 TraesCS5B01G234300 chr3D 95.312 64 3 0 2494 2557 400684028 400683965 1.500000e-17 102.0
20 TraesCS5B01G234300 chr2D 92.754 69 5 0 2489 2557 619480786 619480854 5.400000e-17 100.0
21 TraesCS5B01G234300 chr4B 91.549 71 6 0 2487 2557 512752906 512752836 1.940000e-16 99.0
22 TraesCS5B01G234300 chr4B 88.889 81 4 3 2495 2570 17268139 17268059 2.510000e-15 95.3
23 TraesCS5B01G234300 chr4D 90.541 74 5 2 2485 2557 469582366 469582294 6.990000e-16 97.1
24 TraesCS5B01G234300 chr4A 88.608 79 9 0 2495 2573 737380794 737380716 6.990000e-16 97.1
25 TraesCS5B01G234300 chr7B 86.585 82 11 0 2490 2571 736761474 736761393 3.250000e-14 91.6
26 TraesCS5B01G234300 chr7B 86.585 82 11 0 2490 2571 737097882 737097963 3.250000e-14 91.6
27 TraesCS5B01G234300 chr7B 86.585 82 11 0 2490 2571 737398518 737398599 3.250000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G234300 chr5B 412444380 412452841 8461 True 15627.0 15627 100.000000 1 8462 1 chr5B.!!$R1 8461
1 TraesCS5B01G234300 chr5D 351329545 351337312 7767 True 1863.5 4176 93.403167 873 8459 6 chr5D.!!$R2 7586
2 TraesCS5B01G234300 chr5D 351393063 351393681 618 True 760.0 760 89.524000 124 723 1 chr5D.!!$R1 599
3 TraesCS5B01G234300 chr5A 451721440 451731376 9936 True 1196.5 3417 93.876000 127 8459 10 chr5A.!!$R1 8332

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.109086 CCGTGAGTAGCCACACAGAG 60.109 60.000 0.00 0.00 36.89 3.35 F
116 117 0.390472 GTGAGTAGCCACACAGAGCC 60.390 60.000 0.00 0.00 37.04 4.70 F
800 829 0.532862 AACAACCAGGCACTCGACAG 60.533 55.000 0.00 0.00 34.60 3.51 F
1641 1680 0.948678 TACCTTTCAAAGTGCGGTGC 59.051 50.000 0.00 0.00 0.00 5.01 F
2876 3217 0.890996 GGGCTATGGATGGGAAAGCG 60.891 60.000 0.00 0.00 33.96 4.68 F
3581 3923 0.035056 ACCATAAGCCCAGCTGTCAC 60.035 55.000 13.81 1.03 39.62 3.67 F
4610 5029 1.072331 GGAAGCCACTTTCCACTCTGA 59.928 52.381 0.09 0.00 44.90 3.27 F
4800 5219 1.063972 TGCTTGCGCAGTTGTTCAC 59.936 52.632 11.31 0.00 42.25 3.18 F
6405 6877 0.324275 ATATGCAAAAGCGGTGGGGT 60.324 50.000 0.00 0.00 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1571 1610 0.383590 CATGCTCGAGACGACTGGAT 59.616 55.000 18.75 0.0 31.03 3.41 R
2034 2361 2.750350 CCCTCCCAGCTGACGTTT 59.250 61.111 17.39 0.0 0.00 3.60 R
2599 2940 0.961753 GCCCACTTCAGGACCAAAAG 59.038 55.000 0.00 0.0 0.00 2.27 R
2943 3284 2.026915 ACAGCACAGCATAGATGAACCA 60.027 45.455 0.00 0.0 0.00 3.67 R
4250 4642 0.892755 TCCCAGTGTCGATGGTGTAC 59.107 55.000 2.98 0.0 35.96 2.90 R
4615 5034 1.003233 GTGTACTGTTGGGAAGGAGGG 59.997 57.143 0.00 0.0 0.00 4.30 R
5629 6060 0.251922 AAGCACCATGCCCATGAAGT 60.252 50.000 9.73 0.0 46.52 3.01 R
6458 6930 0.885196 GGCCGCTTGGTTTGTGATTA 59.115 50.000 0.00 0.0 34.16 1.75 R
7745 8344 0.033011 AGATAGCGTGAGTGGGGAGT 60.033 55.000 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.189752 TGATCTCCAGTCCACTCTGC 58.810 55.000 0.00 0.00 34.47 4.26
20 21 1.189752 GATCTCCAGTCCACTCTGCA 58.810 55.000 0.00 0.00 34.47 4.41
21 22 1.136695 GATCTCCAGTCCACTCTGCAG 59.863 57.143 7.63 7.63 34.47 4.41
22 23 1.079266 CTCCAGTCCACTCTGCAGC 60.079 63.158 9.47 0.00 34.47 5.25
23 24 1.824224 CTCCAGTCCACTCTGCAGCA 61.824 60.000 9.47 0.00 34.47 4.41
24 25 1.071987 CCAGTCCACTCTGCAGCAA 59.928 57.895 9.47 0.00 34.47 3.91
25 26 1.233285 CCAGTCCACTCTGCAGCAAC 61.233 60.000 9.47 2.37 34.47 4.17
26 27 0.533531 CAGTCCACTCTGCAGCAACA 60.534 55.000 9.47 0.00 0.00 3.33
27 28 0.250209 AGTCCACTCTGCAGCAACAG 60.250 55.000 9.47 3.41 39.12 3.16
28 29 0.533755 GTCCACTCTGCAGCAACAGT 60.534 55.000 9.47 4.16 38.84 3.55
29 30 1.047801 TCCACTCTGCAGCAACAGTA 58.952 50.000 9.47 0.00 38.84 2.74
30 31 1.001293 TCCACTCTGCAGCAACAGTAG 59.999 52.381 9.47 1.34 38.84 2.57
31 32 1.270518 CCACTCTGCAGCAACAGTAGT 60.271 52.381 9.47 2.07 38.84 2.73
32 33 2.487934 CACTCTGCAGCAACAGTAGTT 58.512 47.619 9.47 0.00 38.84 2.24
33 34 2.478134 CACTCTGCAGCAACAGTAGTTC 59.522 50.000 9.47 0.00 38.84 3.01
34 35 1.723542 CTCTGCAGCAACAGTAGTTCG 59.276 52.381 9.47 0.00 38.84 3.95
35 36 1.339929 TCTGCAGCAACAGTAGTTCGA 59.660 47.619 9.47 0.00 38.84 3.71
36 37 2.029020 TCTGCAGCAACAGTAGTTCGAT 60.029 45.455 9.47 0.00 38.84 3.59
37 38 3.192633 TCTGCAGCAACAGTAGTTCGATA 59.807 43.478 9.47 0.00 38.84 2.92
38 39 3.511699 TGCAGCAACAGTAGTTCGATAG 58.488 45.455 0.00 0.00 35.28 2.08
39 40 4.675408 CTGCAGCAACAGTAGTTCGATAGA 60.675 45.833 0.00 0.00 35.28 1.98
40 41 5.962533 CTGCAGCAACAGTAGTTCGATAGAT 60.963 44.000 0.00 0.00 37.71 1.98
41 42 6.733233 CTGCAGCAACAGTAGTTCGATAGATA 60.733 42.308 0.00 0.00 37.71 1.98
42 43 8.461700 CTGCAGCAACAGTAGTTCGATAGATAG 61.462 44.444 0.00 0.00 37.71 2.08
52 53 3.223674 TCGATAGATAGGACACTGGCA 57.776 47.619 0.00 0.00 42.67 4.92
53 54 3.562182 TCGATAGATAGGACACTGGCAA 58.438 45.455 0.00 0.00 42.67 4.52
54 55 4.152647 TCGATAGATAGGACACTGGCAAT 58.847 43.478 0.00 0.00 42.67 3.56
55 56 5.321927 TCGATAGATAGGACACTGGCAATA 58.678 41.667 0.00 0.00 42.67 1.90
56 57 5.183331 TCGATAGATAGGACACTGGCAATAC 59.817 44.000 0.00 0.00 42.67 1.89
57 58 3.735237 AGATAGGACACTGGCAATACG 57.265 47.619 0.00 0.00 0.00 3.06
58 59 2.135933 GATAGGACACTGGCAATACGC 58.864 52.381 0.00 0.00 41.28 4.42
59 60 1.191535 TAGGACACTGGCAATACGCT 58.808 50.000 0.00 0.00 41.91 5.07
60 61 0.324943 AGGACACTGGCAATACGCTT 59.675 50.000 0.00 0.00 41.91 4.68
61 62 0.727398 GGACACTGGCAATACGCTTC 59.273 55.000 0.00 0.00 41.91 3.86
62 63 1.438651 GACACTGGCAATACGCTTCA 58.561 50.000 0.00 0.00 41.91 3.02
63 64 1.394917 GACACTGGCAATACGCTTCAG 59.605 52.381 0.00 0.00 41.91 3.02
64 65 1.001974 ACACTGGCAATACGCTTCAGA 59.998 47.619 0.00 0.00 41.91 3.27
65 66 1.662629 CACTGGCAATACGCTTCAGAG 59.337 52.381 0.00 0.00 41.91 3.35
66 67 1.276421 ACTGGCAATACGCTTCAGAGT 59.724 47.619 0.00 0.00 41.91 3.24
67 68 2.289694 ACTGGCAATACGCTTCAGAGTT 60.290 45.455 0.00 0.00 41.91 3.01
68 69 2.346803 TGGCAATACGCTTCAGAGTTC 58.653 47.619 0.00 0.00 41.91 3.01
69 70 2.289382 TGGCAATACGCTTCAGAGTTCA 60.289 45.455 0.00 0.00 41.91 3.18
70 71 2.349886 GGCAATACGCTTCAGAGTTCAG 59.650 50.000 0.00 0.00 41.91 3.02
71 72 3.254060 GCAATACGCTTCAGAGTTCAGA 58.746 45.455 0.00 0.00 37.77 3.27
72 73 3.305629 GCAATACGCTTCAGAGTTCAGAG 59.694 47.826 0.00 0.00 37.77 3.35
73 74 3.791973 ATACGCTTCAGAGTTCAGAGG 57.208 47.619 0.00 0.00 0.00 3.69
74 75 1.333177 ACGCTTCAGAGTTCAGAGGT 58.667 50.000 0.00 0.00 0.00 3.85
75 76 2.515854 ACGCTTCAGAGTTCAGAGGTA 58.484 47.619 0.00 0.00 0.00 3.08
76 77 2.891580 ACGCTTCAGAGTTCAGAGGTAA 59.108 45.455 0.00 0.00 0.00 2.85
77 78 3.057174 ACGCTTCAGAGTTCAGAGGTAAG 60.057 47.826 0.00 0.00 0.00 2.34
78 79 3.258228 GCTTCAGAGTTCAGAGGTAAGC 58.742 50.000 0.00 0.00 0.00 3.09
79 80 3.056179 GCTTCAGAGTTCAGAGGTAAGCT 60.056 47.826 0.00 0.00 36.16 3.74
80 81 4.158764 GCTTCAGAGTTCAGAGGTAAGCTA 59.841 45.833 0.00 0.00 36.16 3.32
81 82 5.336849 GCTTCAGAGTTCAGAGGTAAGCTAA 60.337 44.000 0.00 0.00 36.16 3.09
82 83 6.629291 GCTTCAGAGTTCAGAGGTAAGCTAAT 60.629 42.308 0.00 0.00 36.16 1.73
83 84 6.859112 TCAGAGTTCAGAGGTAAGCTAATT 57.141 37.500 0.00 0.00 0.00 1.40
84 85 7.246171 TCAGAGTTCAGAGGTAAGCTAATTT 57.754 36.000 0.00 0.00 0.00 1.82
85 86 7.680730 TCAGAGTTCAGAGGTAAGCTAATTTT 58.319 34.615 0.00 0.00 0.00 1.82
86 87 7.604164 TCAGAGTTCAGAGGTAAGCTAATTTTG 59.396 37.037 0.00 0.00 0.00 2.44
87 88 7.604164 CAGAGTTCAGAGGTAAGCTAATTTTGA 59.396 37.037 0.00 0.00 0.00 2.69
88 89 8.325046 AGAGTTCAGAGGTAAGCTAATTTTGAT 58.675 33.333 0.00 0.00 0.00 2.57
89 90 8.870075 AGTTCAGAGGTAAGCTAATTTTGATT 57.130 30.769 0.00 0.00 0.00 2.57
90 91 8.951243 AGTTCAGAGGTAAGCTAATTTTGATTC 58.049 33.333 0.00 0.00 0.00 2.52
91 92 7.865706 TCAGAGGTAAGCTAATTTTGATTCC 57.134 36.000 0.00 0.00 0.00 3.01
92 93 6.828785 TCAGAGGTAAGCTAATTTTGATTCCC 59.171 38.462 0.00 0.00 0.00 3.97
93 94 5.823045 AGAGGTAAGCTAATTTTGATTCCCG 59.177 40.000 0.00 0.00 0.00 5.14
94 95 4.887655 AGGTAAGCTAATTTTGATTCCCGG 59.112 41.667 0.00 0.00 0.00 5.73
95 96 3.801114 AAGCTAATTTTGATTCCCGGC 57.199 42.857 0.00 0.00 0.00 6.13
96 97 2.031870 AGCTAATTTTGATTCCCGGCC 58.968 47.619 0.00 0.00 0.00 6.13
97 98 1.269051 GCTAATTTTGATTCCCGGCCG 60.269 52.381 21.04 21.04 0.00 6.13
98 99 2.021457 CTAATTTTGATTCCCGGCCGT 58.979 47.619 26.12 4.65 0.00 5.68
99 100 0.530288 AATTTTGATTCCCGGCCGTG 59.470 50.000 26.12 14.27 0.00 4.94
100 101 0.322997 ATTTTGATTCCCGGCCGTGA 60.323 50.000 26.12 17.03 0.00 4.35
101 102 0.958382 TTTTGATTCCCGGCCGTGAG 60.958 55.000 26.12 12.76 0.00 3.51
102 103 2.119484 TTTGATTCCCGGCCGTGAGT 62.119 55.000 26.12 16.04 0.00 3.41
103 104 1.259142 TTGATTCCCGGCCGTGAGTA 61.259 55.000 26.12 4.05 0.00 2.59
104 105 1.067582 GATTCCCGGCCGTGAGTAG 59.932 63.158 26.12 7.18 0.00 2.57
105 106 2.973180 GATTCCCGGCCGTGAGTAGC 62.973 65.000 26.12 2.56 0.00 3.58
111 112 2.342279 GCCGTGAGTAGCCACACA 59.658 61.111 0.00 0.00 36.89 3.72
112 113 1.738099 GCCGTGAGTAGCCACACAG 60.738 63.158 0.00 0.00 36.89 3.66
113 114 1.964448 CCGTGAGTAGCCACACAGA 59.036 57.895 0.00 0.00 36.89 3.41
114 115 0.109086 CCGTGAGTAGCCACACAGAG 60.109 60.000 0.00 0.00 36.89 3.35
115 116 0.734253 CGTGAGTAGCCACACAGAGC 60.734 60.000 0.00 0.00 36.89 4.09
116 117 0.390472 GTGAGTAGCCACACAGAGCC 60.390 60.000 0.00 0.00 37.04 4.70
117 118 1.153745 GAGTAGCCACACAGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
118 119 2.815647 GTAGCCACACAGAGCCGC 60.816 66.667 0.00 0.00 0.00 6.53
119 120 4.435436 TAGCCACACAGAGCCGCG 62.435 66.667 0.00 0.00 0.00 6.46
158 159 1.550327 GGCAGGAAGAAAAAGGGAGG 58.450 55.000 0.00 0.00 0.00 4.30
410 435 1.147824 CGGCCAGATTCATGAGGCT 59.852 57.895 19.74 8.32 46.23 4.58
515 544 3.721706 GAGACTGCCAGGTGGGGG 61.722 72.222 0.00 0.00 37.04 5.40
602 631 1.757682 AACTGCTTTCGGTTTGGTCA 58.242 45.000 0.00 0.00 38.60 4.02
604 633 2.306847 ACTGCTTTCGGTTTGGTCATT 58.693 42.857 0.00 0.00 0.00 2.57
605 634 3.482436 ACTGCTTTCGGTTTGGTCATTA 58.518 40.909 0.00 0.00 0.00 1.90
606 635 3.252458 ACTGCTTTCGGTTTGGTCATTAC 59.748 43.478 0.00 0.00 0.00 1.89
607 636 3.482436 TGCTTTCGGTTTGGTCATTACT 58.518 40.909 0.00 0.00 0.00 2.24
608 637 3.500680 TGCTTTCGGTTTGGTCATTACTC 59.499 43.478 0.00 0.00 0.00 2.59
610 639 4.324267 CTTTCGGTTTGGTCATTACTCCT 58.676 43.478 0.00 0.00 0.00 3.69
611 640 5.484715 CTTTCGGTTTGGTCATTACTCCTA 58.515 41.667 0.00 0.00 0.00 2.94
612 641 4.460948 TCGGTTTGGTCATTACTCCTAC 57.539 45.455 0.00 0.00 0.00 3.18
613 642 4.091549 TCGGTTTGGTCATTACTCCTACT 58.908 43.478 0.00 0.00 0.00 2.57
614 643 4.159135 TCGGTTTGGTCATTACTCCTACTC 59.841 45.833 0.00 0.00 0.00 2.59
615 644 4.430908 GGTTTGGTCATTACTCCTACTCG 58.569 47.826 0.00 0.00 0.00 4.18
616 645 4.081807 GGTTTGGTCATTACTCCTACTCGT 60.082 45.833 0.00 0.00 0.00 4.18
653 682 1.548973 CGCCGTATGTGATTCGAGGC 61.549 60.000 0.00 0.00 39.68 4.70
679 708 3.362797 TCGTCGGCGAGTGAGCTT 61.363 61.111 8.66 0.00 42.81 3.74
723 752 2.682563 GCCATTGAATCTGGACGGGTTA 60.683 50.000 0.00 0.00 35.70 2.85
724 753 3.206150 CCATTGAATCTGGACGGGTTAG 58.794 50.000 0.00 0.00 35.70 2.34
725 754 3.370527 CCATTGAATCTGGACGGGTTAGT 60.371 47.826 0.00 0.00 35.70 2.24
726 755 4.261801 CATTGAATCTGGACGGGTTAGTT 58.738 43.478 0.00 0.00 0.00 2.24
727 756 4.360951 TTGAATCTGGACGGGTTAGTTT 57.639 40.909 0.00 0.00 0.00 2.66
728 757 3.934068 TGAATCTGGACGGGTTAGTTTC 58.066 45.455 0.00 0.00 0.00 2.78
729 758 3.581332 TGAATCTGGACGGGTTAGTTTCT 59.419 43.478 0.00 0.00 0.00 2.52
730 759 4.773674 TGAATCTGGACGGGTTAGTTTCTA 59.226 41.667 0.00 0.00 0.00 2.10
731 760 5.246656 TGAATCTGGACGGGTTAGTTTCTAA 59.753 40.000 0.00 0.00 0.00 2.10
732 761 5.750352 ATCTGGACGGGTTAGTTTCTAAA 57.250 39.130 0.00 0.00 0.00 1.85
733 762 5.549742 TCTGGACGGGTTAGTTTCTAAAA 57.450 39.130 0.00 0.00 0.00 1.52
734 763 5.927819 TCTGGACGGGTTAGTTTCTAAAAA 58.072 37.500 0.00 0.00 0.00 1.94
770 799 0.878961 GTTTCTGCTGACCGTCCGTT 60.879 55.000 0.00 0.00 0.00 4.44
797 826 1.227823 CCAACAACCAGGCACTCGA 60.228 57.895 0.00 0.00 34.60 4.04
800 829 0.532862 AACAACCAGGCACTCGACAG 60.533 55.000 0.00 0.00 34.60 3.51
822 851 2.232696 TGCGTTACTGTGAAGAGCCATA 59.767 45.455 0.00 0.00 0.00 2.74
844 873 2.825836 CTGCTGGGCCGTTCCATC 60.826 66.667 0.00 0.00 36.05 3.51
855 884 1.472728 CCGTTCCATCCTCCTTTACCG 60.473 57.143 0.00 0.00 0.00 4.02
860 889 2.440817 ATCCTCCTTTACCGGCCCG 61.441 63.158 0.00 0.00 0.00 6.13
861 890 2.884179 ATCCTCCTTTACCGGCCCGA 62.884 60.000 3.71 0.00 0.00 5.14
970 999 1.131928 ACCCCACCTAAAACCTCGCT 61.132 55.000 0.00 0.00 0.00 4.93
975 1004 1.207329 CACCTAAAACCTCGCTAGCCT 59.793 52.381 9.66 0.00 0.00 4.58
978 1007 1.480954 CTAAAACCTCGCTAGCCTCCA 59.519 52.381 9.66 0.00 0.00 3.86
1374 1412 1.822613 CTGGCTCTACTACCGCCGA 60.823 63.158 0.00 0.00 46.67 5.54
1569 1608 5.396362 CGAGATTAATTTTGGCATTGCTACG 59.604 40.000 8.82 0.00 0.00 3.51
1571 1610 6.862209 AGATTAATTTTGGCATTGCTACGAA 58.138 32.000 8.82 0.73 0.00 3.85
1637 1676 7.687005 TGTTATTTTTACCTTTCAAAGTGCG 57.313 32.000 0.00 0.00 0.00 5.34
1641 1680 0.948678 TACCTTTCAAAGTGCGGTGC 59.051 50.000 0.00 0.00 0.00 5.01
1713 1756 7.433708 TGTGTACATTCTGTTTTATGGACTG 57.566 36.000 0.00 0.00 36.70 3.51
1718 1761 9.561069 GTACATTCTGTTTTATGGACTGGATAT 57.439 33.333 0.00 0.00 33.64 1.63
1827 1871 6.707440 TGGTATATGCATTTGTTAACAGGG 57.293 37.500 3.54 3.86 0.00 4.45
1831 1875 4.556592 ATGCATTTGTTAACAGGGCAAT 57.443 36.364 24.79 13.70 33.85 3.56
1832 1876 4.348863 TGCATTTGTTAACAGGGCAATT 57.651 36.364 21.19 0.00 0.00 2.32
1834 1878 5.128919 TGCATTTGTTAACAGGGCAATTTT 58.871 33.333 21.19 0.00 0.00 1.82
2020 2347 6.930164 TCATTGATGTGCCATAAATTATTGGC 59.070 34.615 19.71 19.71 46.82 4.52
2034 2361 7.416964 AAATTATTGGCAATGCTAACTGGTA 57.583 32.000 22.57 0.00 30.71 3.25
2143 2472 5.050567 GCTGCAAAATTTCTCTTGTTTCCAG 60.051 40.000 0.00 0.00 0.00 3.86
2172 2502 3.243035 CCATGCGTTTGTGAAGAAACTGA 60.243 43.478 2.15 0.00 34.26 3.41
2189 2523 6.935208 AGAAACTGACCCATACAACTAAACTC 59.065 38.462 0.00 0.00 0.00 3.01
2192 2526 3.007074 TGACCCATACAACTAAACTCGCA 59.993 43.478 0.00 0.00 0.00 5.10
2429 2770 1.701847 GATACTCTGGTGCATCCCCAT 59.298 52.381 0.00 0.00 34.77 4.00
2468 2809 2.192664 TATGCGCTTTTCCAACTCCA 57.807 45.000 9.73 0.00 0.00 3.86
2501 2842 9.884814 AGAATACAGACATAAATACTACTCCCT 57.115 33.333 0.00 0.00 0.00 4.20
2503 2844 6.980416 ACAGACATAAATACTACTCCCTCC 57.020 41.667 0.00 0.00 0.00 4.30
2504 2845 5.535406 ACAGACATAAATACTACTCCCTCCG 59.465 44.000 0.00 0.00 0.00 4.63
2505 2846 5.535406 CAGACATAAATACTACTCCCTCCGT 59.465 44.000 0.00 0.00 0.00 4.69
2506 2847 6.713903 CAGACATAAATACTACTCCCTCCGTA 59.286 42.308 0.00 0.00 0.00 4.02
2507 2848 7.230108 CAGACATAAATACTACTCCCTCCGTAA 59.770 40.741 0.00 0.00 0.00 3.18
2508 2849 7.781693 AGACATAAATACTACTCCCTCCGTAAA 59.218 37.037 0.00 0.00 0.00 2.01
2509 2850 7.949434 ACATAAATACTACTCCCTCCGTAAAG 58.051 38.462 0.00 0.00 0.00 1.85
2510 2851 7.781693 ACATAAATACTACTCCCTCCGTAAAGA 59.218 37.037 0.00 0.00 0.00 2.52
2511 2852 8.636213 CATAAATACTACTCCCTCCGTAAAGAA 58.364 37.037 0.00 0.00 0.00 2.52
2512 2853 7.486407 AAATACTACTCCCTCCGTAAAGAAA 57.514 36.000 0.00 0.00 0.00 2.52
2513 2854 7.672122 AATACTACTCCCTCCGTAAAGAAAT 57.328 36.000 0.00 0.00 0.00 2.17
2514 2855 8.773033 AATACTACTCCCTCCGTAAAGAAATA 57.227 34.615 0.00 0.00 0.00 1.40
2515 2856 8.953223 ATACTACTCCCTCCGTAAAGAAATAT 57.047 34.615 0.00 0.00 0.00 1.28
2517 2858 8.773033 ACTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
2518 2859 8.858094 ACTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
2519 2860 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2520 2861 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
2521 2862 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2522 2863 6.325545 TCCCTCCGTAAAGAAATATAAGAGCA 59.674 38.462 0.00 0.00 0.00 4.26
2523 2864 7.016268 TCCCTCCGTAAAGAAATATAAGAGCAT 59.984 37.037 0.00 0.00 0.00 3.79
2524 2865 7.661847 CCCTCCGTAAAGAAATATAAGAGCATT 59.338 37.037 0.00 0.00 0.00 3.56
2525 2866 9.057089 CCTCCGTAAAGAAATATAAGAGCATTT 57.943 33.333 0.00 0.00 0.00 2.32
2526 2867 9.869844 CTCCGTAAAGAAATATAAGAGCATTTG 57.130 33.333 0.00 0.00 0.00 2.32
2527 2868 8.836413 TCCGTAAAGAAATATAAGAGCATTTGG 58.164 33.333 0.00 0.00 0.00 3.28
2528 2869 8.836413 CCGTAAAGAAATATAAGAGCATTTGGA 58.164 33.333 0.00 0.00 0.00 3.53
2529 2870 9.651718 CGTAAAGAAATATAAGAGCATTTGGAC 57.348 33.333 0.00 0.00 0.00 4.02
2530 2871 9.952188 GTAAAGAAATATAAGAGCATTTGGACC 57.048 33.333 0.00 0.00 0.00 4.46
2531 2872 8.593945 AAAGAAATATAAGAGCATTTGGACCA 57.406 30.769 0.00 0.00 0.00 4.02
2532 2873 7.573968 AGAAATATAAGAGCATTTGGACCAC 57.426 36.000 0.00 0.00 0.00 4.16
2533 2874 7.349598 AGAAATATAAGAGCATTTGGACCACT 58.650 34.615 0.00 0.00 0.00 4.00
2534 2875 8.494433 AGAAATATAAGAGCATTTGGACCACTA 58.506 33.333 0.00 0.00 0.00 2.74
2535 2876 8.451908 AAATATAAGAGCATTTGGACCACTAC 57.548 34.615 0.00 0.00 0.00 2.73
2536 2877 5.700402 ATAAGAGCATTTGGACCACTACT 57.300 39.130 0.00 0.00 0.00 2.57
2537 2878 4.373156 AAGAGCATTTGGACCACTACTT 57.627 40.909 0.00 0.00 0.00 2.24
2538 2879 4.373156 AGAGCATTTGGACCACTACTTT 57.627 40.909 0.00 0.00 0.00 2.66
2539 2880 5.499004 AGAGCATTTGGACCACTACTTTA 57.501 39.130 0.00 0.00 0.00 1.85
2540 2881 5.491982 AGAGCATTTGGACCACTACTTTAG 58.508 41.667 0.00 0.00 0.00 1.85
2541 2882 5.013183 AGAGCATTTGGACCACTACTTTAGT 59.987 40.000 0.00 0.00 40.28 2.24
2599 2940 5.437060 TGGAGGAATACACTTGCTAAATCC 58.563 41.667 0.00 0.00 0.00 3.01
2638 2979 1.741706 CGCTCGAAGGTAGTTAGTCCA 59.258 52.381 0.00 0.00 0.00 4.02
2876 3217 0.890996 GGGCTATGGATGGGAAAGCG 60.891 60.000 0.00 0.00 33.96 4.68
2940 3281 4.697828 GGTTGGTGGATTTGTTTTTGTTGT 59.302 37.500 0.00 0.00 0.00 3.32
2943 3284 5.308825 TGGTGGATTTGTTTTTGTTGTGTT 58.691 33.333 0.00 0.00 0.00 3.32
2971 3312 3.812262 TCTATGCTGTGCTGTATTGCAT 58.188 40.909 11.42 11.42 45.23 3.96
2972 3313 3.811497 TCTATGCTGTGCTGTATTGCATC 59.189 43.478 10.41 0.00 45.23 3.91
2994 3335 6.746745 TCGTAACTGAAGTTTTTCTTTGGT 57.253 33.333 0.21 0.00 39.31 3.67
3109 3451 8.605746 CATACGAAGGATTTTCGGTTTATAACA 58.394 33.333 13.06 0.00 45.34 2.41
3147 3489 1.166531 ACGCACTCAAAGGTTCTGCC 61.167 55.000 0.00 0.00 37.58 4.85
3159 3501 3.073274 GGTTCTGCCTTTCATACACCT 57.927 47.619 0.00 0.00 0.00 4.00
3202 3544 3.081804 GTCCCCTGTTTGTTACTCATGG 58.918 50.000 0.00 0.00 0.00 3.66
3367 3709 5.230942 AGAGAAGGTGTCTGTGTTAATTCG 58.769 41.667 0.00 0.00 36.41 3.34
3430 3772 5.499004 AGAGTTGGAAGGTTTGTGCTATA 57.501 39.130 0.00 0.00 0.00 1.31
3485 3827 4.346127 TGCACCTGTTCTCTAGATATGCAT 59.654 41.667 3.79 3.79 35.74 3.96
3502 3844 8.803235 AGATATGCATGCATTATCTTCACAAAT 58.197 29.630 36.23 19.43 37.82 2.32
3507 3849 8.414778 TGCATGCATTATCTTCACAAATTATGA 58.585 29.630 18.46 0.00 0.00 2.15
3521 3863 8.190122 TCACAAATTATGAAATGAATCCTTCGG 58.810 33.333 0.00 0.00 0.00 4.30
3581 3923 0.035056 ACCATAAGCCCAGCTGTCAC 60.035 55.000 13.81 1.03 39.62 3.67
3589 3931 1.810151 GCCCAGCTGTCACGAAAAATA 59.190 47.619 13.81 0.00 0.00 1.40
3592 3934 4.095782 GCCCAGCTGTCACGAAAAATATTA 59.904 41.667 13.81 0.00 0.00 0.98
3626 3968 9.561069 AGTTAATTCAGATAAGTGACTTTGTGT 57.439 29.630 1.97 0.00 0.00 3.72
3793 4135 9.343539 GTTAATCTGCCTCTACCTGAAAATATT 57.656 33.333 0.00 0.00 0.00 1.28
3802 4144 8.831550 CCTCTACCTGAAAATATTCAAGTAAGC 58.168 37.037 0.00 0.00 44.64 3.09
3882 4269 1.272769 ACTGTTACTCTGTTCGGGAGC 59.727 52.381 0.00 0.00 34.46 4.70
3928 4315 6.518493 TGTTCACTAAATTTACTCAGTCCGT 58.482 36.000 0.00 0.00 0.00 4.69
4007 4396 7.510343 AGCATATTTTCCTGTTATGGGCTATTT 59.490 33.333 0.00 0.00 0.00 1.40
4122 4514 1.140312 ACTTGACTTGCCTCTTCCCA 58.860 50.000 0.00 0.00 0.00 4.37
4199 4591 3.376859 TGCGTTTCACAATATCATCACCC 59.623 43.478 0.00 0.00 0.00 4.61
4250 4642 6.149973 TGTCTTAGCTCATTGTTTCATCCTTG 59.850 38.462 0.00 0.00 0.00 3.61
4310 4702 1.136147 GCACAGCAGAGCCGAATTG 59.864 57.895 0.00 0.00 0.00 2.32
4396 4788 7.037730 TGTGGATTTTGGACATCCCATTATTTT 60.038 33.333 0.00 0.00 46.10 1.82
4403 4795 6.015918 TGGACATCCCATTATTTTGTTGAGT 58.984 36.000 0.00 0.00 40.82 3.41
4409 4801 9.573133 CATCCCATTATTTTGTTGAGTTAACTC 57.427 33.333 25.73 25.73 43.15 3.01
4514 4925 4.647564 ATCCTTTGGTTCTGAGTGTCAT 57.352 40.909 0.00 0.00 0.00 3.06
4565 4984 8.077991 CACAACAGATGAATGATGTTACAAACT 58.922 33.333 0.00 0.00 34.36 2.66
4599 5018 4.322057 AAACATATCCTTGGAAGCCACT 57.678 40.909 0.00 0.00 30.78 4.00
4602 5021 4.273318 ACATATCCTTGGAAGCCACTTTC 58.727 43.478 0.00 0.00 30.78 2.62
4610 5029 1.072331 GGAAGCCACTTTCCACTCTGA 59.928 52.381 0.09 0.00 44.90 3.27
4611 5030 2.290577 GGAAGCCACTTTCCACTCTGAT 60.291 50.000 0.09 0.00 44.90 2.90
4613 5032 4.384647 GGAAGCCACTTTCCACTCTGATAT 60.385 45.833 0.09 0.00 44.90 1.63
4614 5033 5.163301 GGAAGCCACTTTCCACTCTGATATA 60.163 44.000 0.09 0.00 44.90 0.86
4615 5034 5.283457 AGCCACTTTCCACTCTGATATAC 57.717 43.478 0.00 0.00 0.00 1.47
4616 5035 4.101741 AGCCACTTTCCACTCTGATATACC 59.898 45.833 0.00 0.00 0.00 2.73
4617 5036 4.743955 GCCACTTTCCACTCTGATATACCC 60.744 50.000 0.00 0.00 0.00 3.69
4618 5037 4.656112 CCACTTTCCACTCTGATATACCCT 59.344 45.833 0.00 0.00 0.00 4.34
4650 5069 9.647797 CCAACAGTACACAGTATTTTATCTACA 57.352 33.333 0.00 0.00 0.00 2.74
4685 5104 5.715439 TCATCTCCTACCATGTTTCCAAT 57.285 39.130 0.00 0.00 0.00 3.16
4731 5150 6.038603 TGTGAATTCAGTGCTATGCCTTATTC 59.961 38.462 8.80 0.00 0.00 1.75
4741 5160 4.216472 GCTATGCCTTATTCCCTTTACAGC 59.784 45.833 0.00 0.00 0.00 4.40
4789 5208 3.867493 TCTCTTGTGATAATCTGCTTGCG 59.133 43.478 0.00 0.00 0.00 4.85
4800 5219 1.063972 TGCTTGCGCAGTTGTTCAC 59.936 52.632 11.31 0.00 42.25 3.18
4811 5230 5.560183 GCGCAGTTGTTCACTAGTACATTTT 60.560 40.000 0.30 0.00 32.76 1.82
4851 5270 6.761714 TCGTTCTTTTCTGATATCTAAAGGGC 59.238 38.462 17.58 12.63 0.00 5.19
4861 5280 6.084738 TGATATCTAAAGGGCTGACTATGGT 58.915 40.000 3.98 0.00 0.00 3.55
4862 5281 6.558775 TGATATCTAAAGGGCTGACTATGGTT 59.441 38.462 3.98 0.00 0.00 3.67
4863 5282 4.487714 TCTAAAGGGCTGACTATGGTTG 57.512 45.455 0.00 0.00 0.00 3.77
4864 5283 3.844211 TCTAAAGGGCTGACTATGGTTGT 59.156 43.478 0.00 0.00 0.00 3.32
4865 5284 5.027460 TCTAAAGGGCTGACTATGGTTGTA 58.973 41.667 0.00 0.00 0.00 2.41
4866 5285 4.862641 AAAGGGCTGACTATGGTTGTAT 57.137 40.909 0.00 0.00 0.00 2.29
4867 5286 4.423625 AAGGGCTGACTATGGTTGTATC 57.576 45.455 0.00 0.00 0.00 2.24
4868 5287 3.658725 AGGGCTGACTATGGTTGTATCT 58.341 45.455 0.00 0.00 0.00 1.98
4869 5288 4.040755 AGGGCTGACTATGGTTGTATCTT 58.959 43.478 0.00 0.00 0.00 2.40
4870 5289 4.130118 GGGCTGACTATGGTTGTATCTTG 58.870 47.826 0.00 0.00 0.00 3.02
4871 5290 4.141711 GGGCTGACTATGGTTGTATCTTGA 60.142 45.833 0.00 0.00 0.00 3.02
4872 5291 5.455326 GGGCTGACTATGGTTGTATCTTGAT 60.455 44.000 0.00 0.00 0.00 2.57
4873 5292 6.058183 GGCTGACTATGGTTGTATCTTGATT 58.942 40.000 0.00 0.00 0.00 2.57
4874 5293 6.543831 GGCTGACTATGGTTGTATCTTGATTT 59.456 38.462 0.00 0.00 0.00 2.17
4875 5294 7.067494 GGCTGACTATGGTTGTATCTTGATTTT 59.933 37.037 0.00 0.00 0.00 1.82
4876 5295 7.912250 GCTGACTATGGTTGTATCTTGATTTTG 59.088 37.037 0.00 0.00 0.00 2.44
4877 5296 8.862325 TGACTATGGTTGTATCTTGATTTTGT 57.138 30.769 0.00 0.00 0.00 2.83
4878 5297 9.295825 TGACTATGGTTGTATCTTGATTTTGTT 57.704 29.630 0.00 0.00 0.00 2.83
4883 5302 9.696917 ATGGTTGTATCTTGATTTTGTTTCTTC 57.303 29.630 0.00 0.00 0.00 2.87
4884 5303 8.912988 TGGTTGTATCTTGATTTTGTTTCTTCT 58.087 29.630 0.00 0.00 0.00 2.85
4931 5350 7.768807 TTAACTTATGTAATTGTTGCCTGGT 57.231 32.000 0.00 0.00 0.00 4.00
4984 5403 9.150348 CACGATGTTGCTGTTATCCATATAATA 57.850 33.333 0.00 0.00 30.42 0.98
5027 5446 5.299279 AGTTCAACATTATTCATTAGCCGGG 59.701 40.000 2.18 0.00 0.00 5.73
5163 5582 3.921677 ACTGTTACCACAATACCACTCG 58.078 45.455 0.00 0.00 30.36 4.18
5170 5589 3.260884 ACCACAATACCACTCGACATCTT 59.739 43.478 0.00 0.00 0.00 2.40
5199 5630 2.432444 TGTGGCACCTTAGCATTACAC 58.568 47.619 16.26 0.00 35.83 2.90
5207 5638 1.933853 CTTAGCATTACACCGCTGTCC 59.066 52.381 0.00 0.00 39.30 4.02
5291 5722 9.601971 TTAGTTAAAATTCGTATTTGTCAGTGC 57.398 29.630 0.41 0.00 34.27 4.40
5325 5756 9.787435 TTCTTAGCAGTAACCTAATCTTTCAAA 57.213 29.630 0.00 0.00 0.00 2.69
5380 5811 4.853924 ACTAAGTGGAAAGTGGCAAATG 57.146 40.909 0.00 0.00 0.00 2.32
5512 5943 2.859165 TGGGAGATTGTGACTGGAAC 57.141 50.000 0.00 0.00 0.00 3.62
5629 6060 2.443255 GCAAGAGGGGAATCCAGGATTA 59.557 50.000 15.21 0.00 38.24 1.75
5647 6078 0.625316 TACTTCATGGGCATGGTGCT 59.375 50.000 1.64 0.00 44.28 4.40
5739 6170 3.123621 GCATATGCTGATGTTAGGTACGC 59.876 47.826 20.64 0.00 38.21 4.42
5786 6217 4.211374 CGTCTTTACCTCCTGAAACAACAG 59.789 45.833 0.00 0.00 37.61 3.16
5787 6218 5.123936 GTCTTTACCTCCTGAAACAACAGT 58.876 41.667 0.00 0.00 36.30 3.55
5833 6289 1.804748 GACTTCCGTTGTCCCATTGAC 59.195 52.381 0.00 0.00 44.72 3.18
5856 6319 9.246670 TGACAATATTTTCAGTGAGAAATGGAT 57.753 29.630 16.79 6.77 45.15 3.41
5951 6423 6.969993 TTAGAGTTTTTACAGGCCACATTT 57.030 33.333 5.01 0.00 0.00 2.32
5962 6434 4.022068 ACAGGCCACATTTGTATTGACTTG 60.022 41.667 5.01 0.00 0.00 3.16
5969 6441 8.647226 GCCACATTTGTATTGACTTGAAAATAC 58.353 33.333 0.00 0.00 38.95 1.89
6252 6724 5.422012 GTCACTCCATGTTCCCCAAAATTAT 59.578 40.000 0.00 0.00 0.00 1.28
6276 6748 5.843673 TGTCCATGCTAAAGTTTCAAACA 57.156 34.783 2.41 0.00 0.00 2.83
6405 6877 0.324275 ATATGCAAAAGCGGTGGGGT 60.324 50.000 0.00 0.00 0.00 4.95
6512 6984 5.909621 ACTTACGTGCAGAATAACCTAGA 57.090 39.130 0.00 0.00 0.00 2.43
6624 7096 3.119708 CCTGCAGGCAAGTTAATGTTCTC 60.120 47.826 22.33 0.00 0.00 2.87
6706 7178 6.727824 GATGTGCTATTACCGCATCTATTT 57.272 37.500 7.47 0.00 43.40 1.40
6786 7258 4.431809 CTTTCTTGGATGTTTGCAACACA 58.568 39.130 14.09 14.09 45.50 3.72
6837 7309 6.095860 CAGCCATTGATTATGAAGAGTTTGGA 59.904 38.462 0.00 0.00 36.26 3.53
7032 7507 4.695455 GCCAAACTTGCTAGTCATTACTCA 59.305 41.667 0.07 0.00 37.15 3.41
7047 7522 4.737855 TTACTCAGTACCTTCCAGCATC 57.262 45.455 0.00 0.00 0.00 3.91
7054 7529 3.643792 AGTACCTTCCAGCATCATAGTCC 59.356 47.826 0.00 0.00 0.00 3.85
7188 7704 8.107095 ACCTGCATTTGGAGTATTTTACTAGAA 58.893 33.333 0.00 0.00 39.59 2.10
7214 7730 7.720957 AGCTATTGTAAATTGTCTGCATATGGA 59.279 33.333 4.56 0.00 0.00 3.41
7275 7791 8.987890 ACTAAACCAATTATTGCATTTGACAAC 58.012 29.630 12.59 0.00 0.00 3.32
7277 7793 4.928615 ACCAATTATTGCATTTGACAACGG 59.071 37.500 0.00 0.00 0.00 4.44
7543 8059 3.369381 GGACATGTGCTATGTCGCT 57.631 52.632 20.67 0.00 46.85 4.93
7605 8121 7.062749 TCAATTGGAGCTTATACGAGGTAAT 57.937 36.000 5.42 0.00 0.00 1.89
7743 8342 9.890629 GTCCTAGGAAATCATATGCACATATTA 57.109 33.333 14.65 0.00 31.98 0.98
7757 8372 5.221641 TGCACATATTATACTCCCCACTCAC 60.222 44.000 0.00 0.00 0.00 3.51
7817 8432 1.411612 GGTATCCCACGGTTCTACCAG 59.588 57.143 0.00 0.00 38.47 4.00
7831 8446 6.255020 CGGTTCTACCAGTTGTATGATGTTAC 59.745 42.308 0.00 0.00 38.47 2.50
7903 8528 5.591472 TCCTCAATCATGGAATTGACATCAC 59.409 40.000 5.87 0.00 39.98 3.06
7940 8565 0.821517 TGGAACACGCCGTCATCTAT 59.178 50.000 0.00 0.00 0.00 1.98
7941 8566 1.202371 TGGAACACGCCGTCATCTATC 60.202 52.381 0.00 0.00 0.00 2.08
8076 8707 6.151985 GGAGATGTACTGCTGCTGTATAGTAT 59.848 42.308 19.96 12.93 34.09 2.12
8127 8758 1.276421 ACATGTCTTAGCAGCGGAAGT 59.724 47.619 9.25 0.00 0.00 3.01
8216 8847 7.584987 CGAAGTAAGGAATGAACAAAGTGAAT 58.415 34.615 0.00 0.00 0.00 2.57
8235 8866 5.418840 GTGAATTTGGTGTGATAATCAGGGT 59.581 40.000 0.00 0.00 0.00 4.34
8243 8874 2.126882 TGATAATCAGGGTGGGTGGAG 58.873 52.381 0.00 0.00 0.00 3.86
8296 8927 2.894765 TGTCGATGTGGGAACTTCTACA 59.105 45.455 0.00 3.11 0.00 2.74
8320 10387 3.668447 TGAGAAGCTGGAAAGATGTCAC 58.332 45.455 0.00 0.00 0.00 3.67
8368 10435 5.285651 GGATTCAGTTGGAGAGAGATTACG 58.714 45.833 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.189752 GCAGAGTGGACTGGAGATCA 58.810 55.000 0.00 0.00 38.22 2.92
1 2 1.189752 TGCAGAGTGGACTGGAGATC 58.810 55.000 0.00 0.00 38.22 2.75
2 3 3.388497 TGCAGAGTGGACTGGAGAT 57.612 52.632 0.00 0.00 38.22 2.75
3 4 4.952482 TGCAGAGTGGACTGGAGA 57.048 55.556 0.00 0.00 38.22 3.71
5 6 1.410050 TTGCTGCAGAGTGGACTGGA 61.410 55.000 20.43 0.00 38.22 3.86
6 7 1.071987 TTGCTGCAGAGTGGACTGG 59.928 57.895 20.43 0.00 38.22 4.00
7 8 0.533531 TGTTGCTGCAGAGTGGACTG 60.534 55.000 20.43 0.00 40.43 3.51
8 9 0.250209 CTGTTGCTGCAGAGTGGACT 60.250 55.000 20.43 0.00 38.70 3.85
9 10 0.533755 ACTGTTGCTGCAGAGTGGAC 60.534 55.000 20.43 8.06 39.62 4.02
10 11 1.001293 CTACTGTTGCTGCAGAGTGGA 59.999 52.381 20.43 0.00 39.62 4.02
11 12 1.270518 ACTACTGTTGCTGCAGAGTGG 60.271 52.381 20.43 15.91 39.62 4.00
12 13 2.160822 ACTACTGTTGCTGCAGAGTG 57.839 50.000 20.43 9.11 39.62 3.51
13 14 2.760374 GAACTACTGTTGCTGCAGAGT 58.240 47.619 20.43 14.44 39.62 3.24
14 15 1.723542 CGAACTACTGTTGCTGCAGAG 59.276 52.381 20.43 8.39 39.62 3.35
15 16 1.339929 TCGAACTACTGTTGCTGCAGA 59.660 47.619 20.43 0.00 39.62 4.26
16 17 1.783284 TCGAACTACTGTTGCTGCAG 58.217 50.000 10.11 10.11 41.92 4.41
17 18 2.455674 ATCGAACTACTGTTGCTGCA 57.544 45.000 0.00 0.00 36.39 4.41
18 19 3.770666 TCTATCGAACTACTGTTGCTGC 58.229 45.455 0.00 0.00 36.39 5.25
19 20 6.017026 TCCTATCTATCGAACTACTGTTGCTG 60.017 42.308 0.00 0.00 36.39 4.41
20 21 6.016943 GTCCTATCTATCGAACTACTGTTGCT 60.017 42.308 0.00 0.00 36.39 3.91
21 22 6.144175 GTCCTATCTATCGAACTACTGTTGC 58.856 44.000 0.00 0.00 36.39 4.17
22 23 7.012515 AGTGTCCTATCTATCGAACTACTGTTG 59.987 40.741 0.00 0.00 36.39 3.33
23 24 7.012515 CAGTGTCCTATCTATCGAACTACTGTT 59.987 40.741 0.00 0.00 39.42 3.16
24 25 6.483974 CAGTGTCCTATCTATCGAACTACTGT 59.516 42.308 0.00 0.00 0.00 3.55
25 26 6.072948 CCAGTGTCCTATCTATCGAACTACTG 60.073 46.154 0.00 0.00 0.00 2.74
26 27 5.998981 CCAGTGTCCTATCTATCGAACTACT 59.001 44.000 0.00 0.00 0.00 2.57
27 28 5.335035 GCCAGTGTCCTATCTATCGAACTAC 60.335 48.000 0.00 0.00 0.00 2.73
28 29 4.760715 GCCAGTGTCCTATCTATCGAACTA 59.239 45.833 0.00 0.00 0.00 2.24
29 30 3.570550 GCCAGTGTCCTATCTATCGAACT 59.429 47.826 0.00 0.00 0.00 3.01
30 31 3.318275 TGCCAGTGTCCTATCTATCGAAC 59.682 47.826 0.00 0.00 0.00 3.95
31 32 3.562182 TGCCAGTGTCCTATCTATCGAA 58.438 45.455 0.00 0.00 0.00 3.71
32 33 3.223674 TGCCAGTGTCCTATCTATCGA 57.776 47.619 0.00 0.00 0.00 3.59
33 34 4.527509 ATTGCCAGTGTCCTATCTATCG 57.472 45.455 0.00 0.00 0.00 2.92
34 35 5.403246 CGTATTGCCAGTGTCCTATCTATC 58.597 45.833 0.00 0.00 0.00 2.08
35 36 4.322049 GCGTATTGCCAGTGTCCTATCTAT 60.322 45.833 0.00 0.00 37.76 1.98
36 37 3.005472 GCGTATTGCCAGTGTCCTATCTA 59.995 47.826 0.00 0.00 37.76 1.98
37 38 2.224066 GCGTATTGCCAGTGTCCTATCT 60.224 50.000 0.00 0.00 37.76 1.98
38 39 2.135933 GCGTATTGCCAGTGTCCTATC 58.864 52.381 0.00 0.00 37.76 2.08
39 40 2.240493 GCGTATTGCCAGTGTCCTAT 57.760 50.000 0.00 0.00 37.76 2.57
40 41 3.752796 GCGTATTGCCAGTGTCCTA 57.247 52.632 0.00 0.00 37.76 2.94
41 42 4.617875 GCGTATTGCCAGTGTCCT 57.382 55.556 0.00 0.00 37.76 3.85
50 51 3.254060 TCTGAACTCTGAAGCGTATTGC 58.746 45.455 0.00 0.00 46.98 3.56
51 52 3.862267 CCTCTGAACTCTGAAGCGTATTG 59.138 47.826 0.00 0.00 0.00 1.90
52 53 3.511934 ACCTCTGAACTCTGAAGCGTATT 59.488 43.478 0.00 0.00 0.00 1.89
53 54 3.093057 ACCTCTGAACTCTGAAGCGTAT 58.907 45.455 0.00 0.00 0.00 3.06
54 55 2.515854 ACCTCTGAACTCTGAAGCGTA 58.484 47.619 0.00 0.00 0.00 4.42
55 56 1.333177 ACCTCTGAACTCTGAAGCGT 58.667 50.000 0.00 0.00 0.00 5.07
56 57 3.506810 CTTACCTCTGAACTCTGAAGCG 58.493 50.000 0.00 0.00 0.00 4.68
57 58 3.056179 AGCTTACCTCTGAACTCTGAAGC 60.056 47.826 0.00 0.00 0.00 3.86
58 59 4.799564 AGCTTACCTCTGAACTCTGAAG 57.200 45.455 0.00 0.00 0.00 3.02
59 60 6.859112 ATTAGCTTACCTCTGAACTCTGAA 57.141 37.500 0.00 0.00 0.00 3.02
60 61 6.859112 AATTAGCTTACCTCTGAACTCTGA 57.141 37.500 0.00 0.00 0.00 3.27
61 62 7.604164 TCAAAATTAGCTTACCTCTGAACTCTG 59.396 37.037 0.00 0.00 0.00 3.35
62 63 7.680730 TCAAAATTAGCTTACCTCTGAACTCT 58.319 34.615 0.00 0.00 0.00 3.24
63 64 7.907214 TCAAAATTAGCTTACCTCTGAACTC 57.093 36.000 0.00 0.00 0.00 3.01
64 65 8.870075 AATCAAAATTAGCTTACCTCTGAACT 57.130 30.769 0.00 0.00 0.00 3.01
65 66 8.184848 GGAATCAAAATTAGCTTACCTCTGAAC 58.815 37.037 0.00 0.00 0.00 3.18
66 67 7.339466 GGGAATCAAAATTAGCTTACCTCTGAA 59.661 37.037 0.00 0.00 0.00 3.02
67 68 6.828785 GGGAATCAAAATTAGCTTACCTCTGA 59.171 38.462 0.00 0.00 0.00 3.27
68 69 6.238484 CGGGAATCAAAATTAGCTTACCTCTG 60.238 42.308 0.00 0.00 0.00 3.35
69 70 5.823045 CGGGAATCAAAATTAGCTTACCTCT 59.177 40.000 0.00 0.00 0.00 3.69
70 71 5.008712 CCGGGAATCAAAATTAGCTTACCTC 59.991 44.000 0.00 0.00 0.00 3.85
71 72 4.887655 CCGGGAATCAAAATTAGCTTACCT 59.112 41.667 0.00 0.00 0.00 3.08
72 73 4.499188 GCCGGGAATCAAAATTAGCTTACC 60.499 45.833 2.18 0.00 0.00 2.85
73 74 4.499188 GGCCGGGAATCAAAATTAGCTTAC 60.499 45.833 2.18 0.00 0.00 2.34
74 75 3.634910 GGCCGGGAATCAAAATTAGCTTA 59.365 43.478 2.18 0.00 0.00 3.09
75 76 2.430694 GGCCGGGAATCAAAATTAGCTT 59.569 45.455 2.18 0.00 0.00 3.74
76 77 2.031870 GGCCGGGAATCAAAATTAGCT 58.968 47.619 2.18 0.00 0.00 3.32
77 78 1.269051 CGGCCGGGAATCAAAATTAGC 60.269 52.381 20.10 0.00 0.00 3.09
78 79 2.021457 ACGGCCGGGAATCAAAATTAG 58.979 47.619 31.76 0.00 0.00 1.73
79 80 1.746220 CACGGCCGGGAATCAAAATTA 59.254 47.619 31.76 0.00 0.00 1.40
80 81 0.530288 CACGGCCGGGAATCAAAATT 59.470 50.000 31.76 0.00 0.00 1.82
81 82 0.322997 TCACGGCCGGGAATCAAAAT 60.323 50.000 31.73 0.00 0.00 1.82
82 83 0.958382 CTCACGGCCGGGAATCAAAA 60.958 55.000 32.95 7.10 0.00 2.44
83 84 1.376683 CTCACGGCCGGGAATCAAA 60.377 57.895 32.95 7.98 0.00 2.69
84 85 1.259142 TACTCACGGCCGGGAATCAA 61.259 55.000 32.95 14.03 0.00 2.57
85 86 1.672854 CTACTCACGGCCGGGAATCA 61.673 60.000 32.95 17.80 0.00 2.57
86 87 1.067582 CTACTCACGGCCGGGAATC 59.932 63.158 32.95 0.00 0.00 2.52
87 88 3.090219 GCTACTCACGGCCGGGAAT 62.090 63.158 32.95 26.16 0.00 3.01
88 89 3.766691 GCTACTCACGGCCGGGAA 61.767 66.667 32.95 17.38 0.00 3.97
94 95 1.738099 CTGTGTGGCTACTCACGGC 60.738 63.158 0.64 0.00 42.45 5.68
95 96 0.109086 CTCTGTGTGGCTACTCACGG 60.109 60.000 0.64 0.00 44.73 4.94
96 97 0.734253 GCTCTGTGTGGCTACTCACG 60.734 60.000 0.64 0.00 42.45 4.35
97 98 0.390472 GGCTCTGTGTGGCTACTCAC 60.390 60.000 0.64 0.00 40.54 3.51
98 99 1.877576 CGGCTCTGTGTGGCTACTCA 61.878 60.000 0.64 2.99 0.00 3.41
99 100 1.153745 CGGCTCTGTGTGGCTACTC 60.154 63.158 0.64 0.00 0.00 2.59
100 101 2.973899 CGGCTCTGTGTGGCTACT 59.026 61.111 0.64 0.00 0.00 2.57
101 102 2.815647 GCGGCTCTGTGTGGCTAC 60.816 66.667 0.00 0.00 0.00 3.58
102 103 4.435436 CGCGGCTCTGTGTGGCTA 62.435 66.667 0.00 0.00 0.00 3.93
115 116 4.514577 CTAGGTGTCAGCCCGCGG 62.515 72.222 21.04 21.04 0.00 6.46
118 119 3.417275 CTCGCTAGGTGTCAGCCCG 62.417 68.421 0.00 0.00 35.53 6.13
119 120 2.496817 CTCGCTAGGTGTCAGCCC 59.503 66.667 0.00 0.00 35.53 5.19
120 121 2.496817 CCTCGCTAGGTGTCAGCC 59.503 66.667 0.00 0.00 38.19 4.85
121 122 2.202810 GCCTCGCTAGGTGTCAGC 60.203 66.667 6.11 0.00 45.64 4.26
122 123 2.103143 CGCCTCGCTAGGTGTCAG 59.897 66.667 9.63 0.00 46.60 3.51
388 389 2.194056 CATGAATCTGGCCGCCCT 59.806 61.111 7.03 0.00 0.00 5.19
520 549 2.203015 CATCCACCCTAACCCGCG 60.203 66.667 0.00 0.00 0.00 6.46
602 631 4.081254 GGTCCCAAAACGAGTAGGAGTAAT 60.081 45.833 0.00 0.00 0.00 1.89
604 633 2.827921 GGTCCCAAAACGAGTAGGAGTA 59.172 50.000 0.00 0.00 0.00 2.59
605 634 1.622312 GGTCCCAAAACGAGTAGGAGT 59.378 52.381 0.00 0.00 0.00 3.85
606 635 1.403780 CGGTCCCAAAACGAGTAGGAG 60.404 57.143 0.00 0.00 0.00 3.69
607 636 0.604578 CGGTCCCAAAACGAGTAGGA 59.395 55.000 0.00 0.00 0.00 2.94
608 637 0.390735 CCGGTCCCAAAACGAGTAGG 60.391 60.000 0.00 0.00 0.00 3.18
610 639 0.604578 CTCCGGTCCCAAAACGAGTA 59.395 55.000 0.00 0.00 0.00 2.59
611 640 1.117142 TCTCCGGTCCCAAAACGAGT 61.117 55.000 0.00 0.00 0.00 4.18
612 641 0.249398 ATCTCCGGTCCCAAAACGAG 59.751 55.000 0.00 0.00 0.00 4.18
613 642 0.036765 CATCTCCGGTCCCAAAACGA 60.037 55.000 0.00 0.00 0.00 3.85
614 643 1.644786 GCATCTCCGGTCCCAAAACG 61.645 60.000 0.00 0.00 0.00 3.60
615 644 1.313091 GGCATCTCCGGTCCCAAAAC 61.313 60.000 0.00 0.00 0.00 2.43
616 645 1.001393 GGCATCTCCGGTCCCAAAA 60.001 57.895 0.00 0.00 0.00 2.44
679 708 1.891919 GACAACGCTGGAGCCACAA 60.892 57.895 0.00 0.00 37.91 3.33
734 763 5.221322 GCAGAAACCAGTCCAGATTCTTTTT 60.221 40.000 0.00 0.00 0.00 1.94
735 764 4.279420 GCAGAAACCAGTCCAGATTCTTTT 59.721 41.667 0.00 0.00 0.00 2.27
736 765 3.823304 GCAGAAACCAGTCCAGATTCTTT 59.177 43.478 0.00 0.00 0.00 2.52
737 766 3.073650 AGCAGAAACCAGTCCAGATTCTT 59.926 43.478 0.00 0.00 0.00 2.52
738 767 2.641815 AGCAGAAACCAGTCCAGATTCT 59.358 45.455 0.00 0.00 0.00 2.40
739 768 2.746362 CAGCAGAAACCAGTCCAGATTC 59.254 50.000 0.00 0.00 0.00 2.52
740 769 2.373169 TCAGCAGAAACCAGTCCAGATT 59.627 45.455 0.00 0.00 0.00 2.40
741 770 1.980765 TCAGCAGAAACCAGTCCAGAT 59.019 47.619 0.00 0.00 0.00 2.90
742 771 1.070758 GTCAGCAGAAACCAGTCCAGA 59.929 52.381 0.00 0.00 0.00 3.86
743 772 1.517242 GTCAGCAGAAACCAGTCCAG 58.483 55.000 0.00 0.00 0.00 3.86
744 773 0.108585 GGTCAGCAGAAACCAGTCCA 59.891 55.000 0.00 0.00 35.53 4.02
745 774 0.951040 CGGTCAGCAGAAACCAGTCC 60.951 60.000 0.00 0.00 35.13 3.85
746 775 0.249911 ACGGTCAGCAGAAACCAGTC 60.250 55.000 0.00 0.00 35.13 3.51
747 776 0.249911 GACGGTCAGCAGAAACCAGT 60.250 55.000 2.62 0.00 35.13 4.00
748 777 0.951040 GGACGGTCAGCAGAAACCAG 60.951 60.000 10.76 0.00 35.13 4.00
749 778 1.070786 GGACGGTCAGCAGAAACCA 59.929 57.895 10.76 0.00 35.13 3.67
750 779 2.027625 CGGACGGTCAGCAGAAACC 61.028 63.158 10.76 0.00 0.00 3.27
751 780 0.878961 AACGGACGGTCAGCAGAAAC 60.879 55.000 10.76 0.00 0.00 2.78
752 781 0.878523 CAACGGACGGTCAGCAGAAA 60.879 55.000 10.76 0.00 0.00 2.52
753 782 1.300620 CAACGGACGGTCAGCAGAA 60.301 57.895 10.76 0.00 0.00 3.02
754 783 2.338620 CAACGGACGGTCAGCAGA 59.661 61.111 10.76 0.00 0.00 4.26
755 784 2.029073 ACAACGGACGGTCAGCAG 59.971 61.111 10.76 4.89 0.00 4.24
782 811 1.069765 CTGTCGAGTGCCTGGTTGT 59.930 57.895 0.00 0.00 0.00 3.32
800 829 0.790814 GGCTCTTCACAGTAACGCAC 59.209 55.000 0.00 0.00 0.00 5.34
830 859 2.190578 GAGGATGGAACGGCCCAG 59.809 66.667 0.00 0.00 39.97 4.45
836 865 1.472728 CCGGTAAAGGAGGATGGAACG 60.473 57.143 0.00 0.00 0.00 3.95
838 867 0.544697 GCCGGTAAAGGAGGATGGAA 59.455 55.000 1.90 0.00 0.00 3.53
844 873 3.078836 TCGGGCCGGTAAAGGAGG 61.079 66.667 27.98 0.00 0.00 4.30
860 889 0.040958 CTGCTGTTCGGTGCTTTGTC 60.041 55.000 0.00 0.00 0.00 3.18
861 890 0.463654 TCTGCTGTTCGGTGCTTTGT 60.464 50.000 0.00 0.00 0.00 2.83
970 999 3.000819 CGGTGGTGGTGGAGGCTA 61.001 66.667 0.00 0.00 0.00 3.93
1569 1608 0.452184 TGCTCGAGACGACTGGATTC 59.548 55.000 18.75 0.00 31.03 2.52
1571 1610 0.383590 CATGCTCGAGACGACTGGAT 59.616 55.000 18.75 0.00 31.03 3.41
1722 1765 5.591877 GCTTCACCAGGATATCAAACATCTT 59.408 40.000 4.83 0.00 0.00 2.40
1726 1769 4.299586 TGCTTCACCAGGATATCAAACA 57.700 40.909 4.83 0.00 0.00 2.83
1812 1856 5.687770 AAAATTGCCCTGTTAACAAATGC 57.312 34.783 10.03 12.29 0.00 3.56
1834 1878 5.880901 AGGATAGGAGCAAGTCAAGAAAAA 58.119 37.500 0.00 0.00 0.00 1.94
1854 1898 6.144845 AGGTACTGTACTAGGTAACAAGGA 57.855 41.667 16.79 0.00 37.18 3.36
1904 2071 9.292195 CCAAACTTCTGGTAATTCTAAGGTAAA 57.708 33.333 0.00 0.00 0.00 2.01
2020 2347 4.669197 GCTGACGTTTACCAGTTAGCATTG 60.669 45.833 7.35 0.00 45.53 2.82
2025 2352 2.993899 CCAGCTGACGTTTACCAGTTAG 59.006 50.000 17.39 0.00 33.19 2.34
2034 2361 2.750350 CCCTCCCAGCTGACGTTT 59.250 61.111 17.39 0.00 0.00 3.60
2121 2450 6.219417 TCTGGAAACAAGAGAAATTTTGCA 57.781 33.333 0.00 0.00 42.06 4.08
2136 2465 1.994779 CGCATGGCAATTTCTGGAAAC 59.005 47.619 0.00 0.00 32.51 2.78
2143 2472 2.402305 TCACAAACGCATGGCAATTTC 58.598 42.857 0.00 0.00 0.00 2.17
2172 2502 3.688694 TGCGAGTTTAGTTGTATGGGT 57.311 42.857 0.00 0.00 0.00 4.51
2189 2523 2.220315 TGCGAACGTTTTAGATTGCG 57.780 45.000 0.46 0.00 0.00 4.85
2192 2526 3.917985 GGCATTTGCGAACGTTTTAGATT 59.082 39.130 0.46 0.00 43.26 2.40
2454 2795 3.740115 TCTAGTGTGGAGTTGGAAAAGC 58.260 45.455 0.00 0.00 0.00 3.51
2459 2800 5.330233 TGTATTCTCTAGTGTGGAGTTGGA 58.670 41.667 0.00 0.00 33.06 3.53
2495 2836 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
2498 2839 6.522054 TGCTCTTATATTTCTTTACGGAGGG 58.478 40.000 0.00 0.00 0.00 4.30
2499 2840 8.608844 AATGCTCTTATATTTCTTTACGGAGG 57.391 34.615 0.00 0.00 0.00 4.30
2500 2841 9.869844 CAAATGCTCTTATATTTCTTTACGGAG 57.130 33.333 0.00 0.00 0.00 4.63
2501 2842 8.836413 CCAAATGCTCTTATATTTCTTTACGGA 58.164 33.333 0.00 0.00 0.00 4.69
2502 2843 8.836413 TCCAAATGCTCTTATATTTCTTTACGG 58.164 33.333 0.00 0.00 0.00 4.02
2503 2844 9.651718 GTCCAAATGCTCTTATATTTCTTTACG 57.348 33.333 0.00 0.00 0.00 3.18
2504 2845 9.952188 GGTCCAAATGCTCTTATATTTCTTTAC 57.048 33.333 0.00 0.00 0.00 2.01
2505 2846 9.693739 TGGTCCAAATGCTCTTATATTTCTTTA 57.306 29.630 0.00 0.00 0.00 1.85
2506 2847 8.470002 GTGGTCCAAATGCTCTTATATTTCTTT 58.530 33.333 0.00 0.00 0.00 2.52
2507 2848 7.836183 AGTGGTCCAAATGCTCTTATATTTCTT 59.164 33.333 0.00 0.00 0.00 2.52
2508 2849 7.349598 AGTGGTCCAAATGCTCTTATATTTCT 58.650 34.615 0.00 0.00 0.00 2.52
2509 2850 7.573968 AGTGGTCCAAATGCTCTTATATTTC 57.426 36.000 0.00 0.00 0.00 2.17
2510 2851 8.275040 AGTAGTGGTCCAAATGCTCTTATATTT 58.725 33.333 0.00 0.00 0.00 1.40
2511 2852 7.806180 AGTAGTGGTCCAAATGCTCTTATATT 58.194 34.615 0.00 0.00 0.00 1.28
2512 2853 7.380423 AGTAGTGGTCCAAATGCTCTTATAT 57.620 36.000 0.00 0.00 0.00 0.86
2513 2854 6.808321 AGTAGTGGTCCAAATGCTCTTATA 57.192 37.500 0.00 0.00 0.00 0.98
2514 2855 5.700402 AGTAGTGGTCCAAATGCTCTTAT 57.300 39.130 0.00 0.00 0.00 1.73
2515 2856 5.499004 AAGTAGTGGTCCAAATGCTCTTA 57.501 39.130 0.00 0.00 0.00 2.10
2516 2857 4.373156 AAGTAGTGGTCCAAATGCTCTT 57.627 40.909 0.00 0.00 0.00 2.85
2517 2858 4.373156 AAAGTAGTGGTCCAAATGCTCT 57.627 40.909 0.00 0.00 0.00 4.09
2518 2859 5.246307 ACTAAAGTAGTGGTCCAAATGCTC 58.754 41.667 0.00 0.00 37.69 4.26
2519 2860 5.242795 ACTAAAGTAGTGGTCCAAATGCT 57.757 39.130 0.00 0.00 37.69 3.79
2520 2861 5.648092 ATCACTAAAGTAGTGGTCCAAATGC 59.352 40.000 13.91 0.00 46.78 3.56
2539 2880 8.043710 CCCTCTGTAAAGAATGTTTAGATCACT 58.956 37.037 0.00 0.00 0.00 3.41
2540 2881 8.041323 TCCCTCTGTAAAGAATGTTTAGATCAC 58.959 37.037 0.00 0.00 0.00 3.06
2541 2882 8.146053 TCCCTCTGTAAAGAATGTTTAGATCA 57.854 34.615 0.00 0.00 0.00 2.92
2542 2883 8.261522 ACTCCCTCTGTAAAGAATGTTTAGATC 58.738 37.037 0.00 0.00 0.00 2.75
2543 2884 8.152023 ACTCCCTCTGTAAAGAATGTTTAGAT 57.848 34.615 0.00 0.00 0.00 1.98
2544 2885 7.554959 ACTCCCTCTGTAAAGAATGTTTAGA 57.445 36.000 0.00 0.00 0.00 2.10
2545 2886 8.311836 TGTACTCCCTCTGTAAAGAATGTTTAG 58.688 37.037 0.00 0.00 0.00 1.85
2546 2887 8.197592 TGTACTCCCTCTGTAAAGAATGTTTA 57.802 34.615 0.00 0.00 0.00 2.01
2547 2888 7.074653 TGTACTCCCTCTGTAAAGAATGTTT 57.925 36.000 0.00 0.00 0.00 2.83
2548 2889 6.681729 TGTACTCCCTCTGTAAAGAATGTT 57.318 37.500 0.00 0.00 0.00 2.71
2549 2890 6.670027 AGATGTACTCCCTCTGTAAAGAATGT 59.330 38.462 0.00 0.00 0.00 2.71
2550 2891 7.118496 AGATGTACTCCCTCTGTAAAGAATG 57.882 40.000 0.00 0.00 0.00 2.67
2551 2892 7.741554 AAGATGTACTCCCTCTGTAAAGAAT 57.258 36.000 0.00 0.00 0.00 2.40
2552 2893 7.386851 CAAAGATGTACTCCCTCTGTAAAGAA 58.613 38.462 0.00 0.00 0.00 2.52
2553 2894 6.070767 CCAAAGATGTACTCCCTCTGTAAAGA 60.071 42.308 0.00 0.00 0.00 2.52
2554 2895 6.070767 TCCAAAGATGTACTCCCTCTGTAAAG 60.071 42.308 0.00 0.00 0.00 1.85
2555 2896 5.783360 TCCAAAGATGTACTCCCTCTGTAAA 59.217 40.000 0.00 0.00 0.00 2.01
2556 2897 5.338632 TCCAAAGATGTACTCCCTCTGTAA 58.661 41.667 0.00 0.00 0.00 2.41
2557 2898 4.942944 TCCAAAGATGTACTCCCTCTGTA 58.057 43.478 0.00 0.00 0.00 2.74
2558 2899 3.772025 CTCCAAAGATGTACTCCCTCTGT 59.228 47.826 0.00 0.00 0.00 3.41
2559 2900 3.133721 CCTCCAAAGATGTACTCCCTCTG 59.866 52.174 0.00 0.00 0.00 3.35
2560 2901 3.012959 TCCTCCAAAGATGTACTCCCTCT 59.987 47.826 0.00 0.00 0.00 3.69
2599 2940 0.961753 GCCCACTTCAGGACCAAAAG 59.038 55.000 0.00 0.00 0.00 2.27
2657 2998 8.543774 CGATAGTCTTTAGCTTTTGTAATCTGG 58.456 37.037 0.00 0.00 0.00 3.86
2677 3018 8.753497 TGAGTATCCTGCATAATATCGATAGT 57.247 34.615 11.41 10.99 37.40 2.12
2717 3058 2.354203 GCGGTGATCTGGAGAAACTTCT 60.354 50.000 0.00 0.00 41.00 2.85
2819 3160 2.481276 CCGATCAGCACGAGGTTTATCA 60.481 50.000 0.00 0.00 0.00 2.15
2876 3217 8.682710 TCCTCATTTGTAACAATATAAACCAGC 58.317 33.333 0.00 0.00 0.00 4.85
2940 3281 2.749076 GCACAGCATAGATGAACCAACA 59.251 45.455 0.00 0.00 0.00 3.33
2943 3284 2.026915 ACAGCACAGCATAGATGAACCA 60.027 45.455 0.00 0.00 0.00 3.67
2971 3312 6.746745 ACCAAAGAAAAACTTCAGTTACGA 57.253 33.333 0.00 0.00 37.93 3.43
2972 3313 7.642586 CCTAACCAAAGAAAAACTTCAGTTACG 59.357 37.037 0.00 0.00 37.93 3.18
3430 3772 8.097038 ACAACTTTGACATGACATAGTAGATGT 58.903 33.333 18.06 15.85 33.27 3.06
3854 4196 9.139734 TCCCGAACAGAGTAACAGTATAATTAT 57.860 33.333 2.97 2.97 0.00 1.28
3855 4197 8.523915 TCCCGAACAGAGTAACAGTATAATTA 57.476 34.615 0.00 0.00 0.00 1.40
3858 4200 5.163581 GCTCCCGAACAGAGTAACAGTATAA 60.164 44.000 0.00 0.00 33.69 0.98
3860 4202 3.130693 GCTCCCGAACAGAGTAACAGTAT 59.869 47.826 0.00 0.00 33.69 2.12
3861 4203 2.490903 GCTCCCGAACAGAGTAACAGTA 59.509 50.000 0.00 0.00 33.69 2.74
3882 4269 5.425398 CAACAAAGATTTGCAATGTTGTCG 58.575 37.500 24.72 10.14 43.49 4.35
3928 4315 6.730507 TCAGATATCCAAAGGCTATATGACCA 59.269 38.462 0.00 0.00 30.40 4.02
3999 4388 5.902613 TGATTGCAGCATATAAATAGCCC 57.097 39.130 0.00 0.00 0.00 5.19
4064 4453 1.895798 TGAGCAGGTACCTGAGAAGTG 59.104 52.381 40.26 17.43 46.30 3.16
4065 4454 2.310779 TGAGCAGGTACCTGAGAAGT 57.689 50.000 40.26 20.55 46.30 3.01
4066 4455 3.030291 AGATGAGCAGGTACCTGAGAAG 58.970 50.000 40.26 18.08 46.30 2.85
4199 4591 2.733552 GCAGACAGATATGCATACCACG 59.266 50.000 8.99 0.00 42.86 4.94
4250 4642 0.892755 TCCCAGTGTCGATGGTGTAC 59.107 55.000 2.98 0.00 35.96 2.90
4301 4693 2.570302 AGTACAGGTAACCAATTCGGCT 59.430 45.455 0.00 0.00 39.03 5.52
4485 4896 6.325028 CACTCAGAACCAAAGGATATCTAGGA 59.675 42.308 2.05 0.00 0.00 2.94
4565 4984 9.667107 CCAAGGATATGTTTTCTTCTACAGTAA 57.333 33.333 0.00 0.00 0.00 2.24
4599 5018 5.157770 AGGAGGGTATATCAGAGTGGAAA 57.842 43.478 0.00 0.00 0.00 3.13
4602 5021 3.835395 GGAAGGAGGGTATATCAGAGTGG 59.165 52.174 0.00 0.00 0.00 4.00
4610 5029 4.022359 ACTGTTGGGAAGGAGGGTATAT 57.978 45.455 0.00 0.00 0.00 0.86
4611 5030 3.502051 ACTGTTGGGAAGGAGGGTATA 57.498 47.619 0.00 0.00 0.00 1.47
4613 5032 2.158127 TGTACTGTTGGGAAGGAGGGTA 60.158 50.000 0.00 0.00 0.00 3.69
4614 5033 1.359168 GTACTGTTGGGAAGGAGGGT 58.641 55.000 0.00 0.00 0.00 4.34
4615 5034 1.003233 GTGTACTGTTGGGAAGGAGGG 59.997 57.143 0.00 0.00 0.00 4.30
4616 5035 1.697432 TGTGTACTGTTGGGAAGGAGG 59.303 52.381 0.00 0.00 0.00 4.30
4617 5036 2.368875 ACTGTGTACTGTTGGGAAGGAG 59.631 50.000 0.00 0.00 0.00 3.69
4618 5037 2.404559 ACTGTGTACTGTTGGGAAGGA 58.595 47.619 0.00 0.00 0.00 3.36
4650 5069 8.537728 TGGTAGGAGATGATTTAAATTGCAAT 57.462 30.769 5.99 5.99 0.00 3.56
4731 5150 2.482721 CACTTAACCACGCTGTAAAGGG 59.517 50.000 0.00 0.00 0.00 3.95
4741 5160 2.413837 AGTTGCTAGCACTTAACCACG 58.586 47.619 19.17 0.00 0.00 4.94
4789 5208 6.725246 ACAAAATGTACTAGTGAACAACTGC 58.275 36.000 5.39 0.00 40.26 4.40
4831 5250 7.278875 AGTCAGCCCTTTAGATATCAGAAAAG 58.721 38.462 5.32 10.90 0.00 2.27
4851 5270 8.950210 ACAAAATCAAGATACAACCATAGTCAG 58.050 33.333 0.00 0.00 0.00 3.51
4866 5285 9.396022 AGAGTTGTAGAAGAAACAAAATCAAGA 57.604 29.630 0.00 0.00 38.50 3.02
4867 5286 9.443283 CAGAGTTGTAGAAGAAACAAAATCAAG 57.557 33.333 0.00 0.00 38.50 3.02
4868 5287 8.956426 ACAGAGTTGTAGAAGAAACAAAATCAA 58.044 29.630 0.00 0.00 38.50 2.57
4869 5288 8.506168 ACAGAGTTGTAGAAGAAACAAAATCA 57.494 30.769 0.00 0.00 38.50 2.57
4872 5291 9.832445 AGATACAGAGTTGTAGAAGAAACAAAA 57.168 29.630 0.00 0.00 42.72 2.44
4873 5292 9.832445 AAGATACAGAGTTGTAGAAGAAACAAA 57.168 29.630 0.00 0.00 42.72 2.83
4874 5293 9.261180 CAAGATACAGAGTTGTAGAAGAAACAA 57.739 33.333 0.00 0.00 42.72 2.83
4875 5294 8.638873 TCAAGATACAGAGTTGTAGAAGAAACA 58.361 33.333 0.00 0.00 42.72 2.83
4876 5295 9.646427 ATCAAGATACAGAGTTGTAGAAGAAAC 57.354 33.333 0.00 0.00 42.72 2.78
4909 5328 5.106317 CGACCAGGCAACAATTACATAAGTT 60.106 40.000 0.00 0.00 41.41 2.66
4910 5329 4.394920 CGACCAGGCAACAATTACATAAGT 59.605 41.667 0.00 0.00 41.41 2.24
4931 5350 1.765904 TGCACCTTTCCATATAGGCGA 59.234 47.619 0.00 0.00 37.29 5.54
5042 5461 9.646427 GGTTGCTTGTTAATTACCATGAAAATA 57.354 29.630 0.00 0.00 0.00 1.40
5043 5462 8.374743 AGGTTGCTTGTTAATTACCATGAAAAT 58.625 29.630 0.00 0.00 0.00 1.82
5044 5463 7.655328 CAGGTTGCTTGTTAATTACCATGAAAA 59.345 33.333 0.00 0.00 0.00 2.29
5090 5509 9.078990 AGGACAATAGAGGAAAAGGTTTTAAAG 57.921 33.333 0.00 0.00 0.00 1.85
5104 5523 5.063564 GCACGAAACTTAAGGACAATAGAGG 59.936 44.000 7.53 0.00 0.00 3.69
5163 5582 2.945668 GCCACATACCTTCCAAGATGTC 59.054 50.000 0.00 0.00 30.13 3.06
5170 5589 2.785743 AGGTGCCACATACCTTCCA 58.214 52.632 0.00 0.00 46.13 3.53
5199 5630 2.002586 CACAAAGATAGTGGACAGCGG 58.997 52.381 0.00 0.00 33.43 5.52
5207 5638 7.678947 AACAAGAAGATCCACAAAGATAGTG 57.321 36.000 0.00 0.00 36.76 2.74
5229 5660 5.827797 TCCCTAGATTACATGATGGCAAAAC 59.172 40.000 0.00 0.00 0.00 2.43
5266 5697 8.775527 TGCACTGACAAATACGAATTTTAACTA 58.224 29.630 0.00 0.00 32.87 2.24
5268 5699 7.845617 TGCACTGACAAATACGAATTTTAAC 57.154 32.000 0.00 0.00 32.87 2.01
5364 5795 1.873486 GCACCATTTGCCACTTTCCAC 60.873 52.381 0.00 0.00 46.63 4.02
5445 5876 2.034687 AAGACAGCTTGCCCGCAT 59.965 55.556 0.00 0.00 31.83 4.73
5512 5943 4.495911 TGCATAGTATTCAGAGAGCTCG 57.504 45.455 8.37 0.00 34.09 5.03
5573 6004 6.357367 GTGAATATACCAAGGTGAGTGGAAT 58.643 40.000 1.07 0.00 39.62 3.01
5629 6060 0.251922 AAGCACCATGCCCATGAAGT 60.252 50.000 9.73 0.00 46.52 3.01
5647 6078 5.070446 ACGCTTATCCAGAATCTCACCATAA 59.930 40.000 0.00 0.00 0.00 1.90
5739 6170 5.163612 GCCTTTTTCCAGAAAGTAGGCTATG 60.164 44.000 25.68 0.00 45.85 2.23
5856 6319 9.739276 ACCAAAATCAGTCAAACTCATTAGATA 57.261 29.630 0.00 0.00 0.00 1.98
5857 6320 8.641498 ACCAAAATCAGTCAAACTCATTAGAT 57.359 30.769 0.00 0.00 0.00 1.98
5858 6321 8.463930 AACCAAAATCAGTCAAACTCATTAGA 57.536 30.769 0.00 0.00 0.00 2.10
5859 6322 8.352201 TGAACCAAAATCAGTCAAACTCATTAG 58.648 33.333 0.00 0.00 0.00 1.73
5860 6323 8.231692 TGAACCAAAATCAGTCAAACTCATTA 57.768 30.769 0.00 0.00 0.00 1.90
5861 6324 7.111247 TGAACCAAAATCAGTCAAACTCATT 57.889 32.000 0.00 0.00 0.00 2.57
5862 6325 6.713762 TGAACCAAAATCAGTCAAACTCAT 57.286 33.333 0.00 0.00 0.00 2.90
5951 6423 9.906660 GAAACCATGTATTTTCAAGTCAATACA 57.093 29.630 7.09 7.09 45.47 2.29
5962 6434 4.081697 CCACCCCTGAAACCATGTATTTTC 60.082 45.833 0.00 0.00 33.15 2.29
5969 6441 0.899717 CCACCACCCCTGAAACCATG 60.900 60.000 0.00 0.00 0.00 3.66
6252 6724 7.517614 TGTTTGAAACTTTAGCATGGACATA 57.482 32.000 9.69 0.00 0.00 2.29
6276 6748 4.036852 GCAAACCAAACTGAGTCTAGCTTT 59.963 41.667 0.00 0.00 0.00 3.51
6405 6877 6.183360 GCGGTGGATTATCATTATCGCATTTA 60.183 38.462 13.25 0.00 40.26 1.40
6458 6930 0.885196 GGCCGCTTGGTTTGTGATTA 59.115 50.000 0.00 0.00 34.16 1.75
6613 7085 6.855914 TCAGCAAACAATTCGAGAACATTAAC 59.144 34.615 0.00 0.00 0.00 2.01
6624 7096 2.030893 TCCAAGCTCAGCAAACAATTCG 60.031 45.455 0.00 0.00 0.00 3.34
6786 7258 4.140805 AGAGGTAGAATAGGATGGAGCAGT 60.141 45.833 0.00 0.00 0.00 4.40
7047 7522 0.103208 GGAGTGGAGTGCGGACTATG 59.897 60.000 10.47 0.00 30.16 2.23
7054 7529 0.965866 TGACCTAGGAGTGGAGTGCG 60.966 60.000 17.98 0.00 0.00 5.34
7081 7556 3.691118 TGGAATTAAGTGCAGAGCATCAC 59.309 43.478 0.00 0.00 41.91 3.06
7088 7563 5.243507 TGAGCAAAATGGAATTAAGTGCAGA 59.756 36.000 3.02 0.00 39.67 4.26
7188 7704 7.720957 TCCATATGCAGACAATTTACAATAGCT 59.279 33.333 0.00 0.00 0.00 3.32
7214 7730 3.896888 CTGGAGGATCAGAGCAGAATAGT 59.103 47.826 0.00 0.00 36.93 2.12
7275 7791 1.555992 TCCCATACACCAAACCTACCG 59.444 52.381 0.00 0.00 0.00 4.02
7277 7793 3.014623 GCTTCCCATACACCAAACCTAC 58.985 50.000 0.00 0.00 0.00 3.18
7543 8059 5.892119 AGATCTCGTTAAACATGGAGGACTA 59.108 40.000 0.00 0.00 0.00 2.59
7605 8121 9.537852 TTGGTAAGAAAGTAGAATAGGAGTACA 57.462 33.333 0.00 0.00 0.00 2.90
7743 8342 2.158445 AGATAGCGTGAGTGGGGAGTAT 60.158 50.000 0.00 0.00 0.00 2.12
7744 8343 1.214673 AGATAGCGTGAGTGGGGAGTA 59.785 52.381 0.00 0.00 0.00 2.59
7745 8344 0.033011 AGATAGCGTGAGTGGGGAGT 60.033 55.000 0.00 0.00 0.00 3.85
7748 8363 3.536956 TTTAAGATAGCGTGAGTGGGG 57.463 47.619 0.00 0.00 0.00 4.96
7757 8372 4.573900 AGATCAGGCCATTTAAGATAGCG 58.426 43.478 5.01 0.00 0.00 4.26
7800 8415 1.278127 CAACTGGTAGAACCGTGGGAT 59.722 52.381 0.00 0.00 42.58 3.85
7817 8432 9.669353 GATGATCCAATTGTAACATCATACAAC 57.331 33.333 20.60 8.21 45.63 3.32
7831 8446 5.416639 TGGTTCAACTGAGATGATCCAATTG 59.583 40.000 17.02 0.00 41.42 2.32
7903 8528 5.163374 TGTTCCACCTCTAGATCATGACATG 60.163 44.000 9.28 9.28 0.00 3.21
7913 8538 1.592400 CGGCGTGTTCCACCTCTAGA 61.592 60.000 0.00 0.00 0.00 2.43
7914 8539 1.153823 CGGCGTGTTCCACCTCTAG 60.154 63.158 0.00 0.00 0.00 2.43
7940 8565 8.801299 TCTAATTTAACTTGATGTGCCAATTGA 58.199 29.630 7.12 0.00 0.00 2.57
7941 8566 8.863049 GTCTAATTTAACTTGATGTGCCAATTG 58.137 33.333 0.00 0.00 0.00 2.32
7975 8600 9.056005 GTATCAGCTTTCCATGTACAATATGAA 57.944 33.333 0.00 0.00 0.00 2.57
8009 8634 1.757118 TGCACTACCTAGCATCAGGTC 59.243 52.381 7.84 0.00 46.34 3.85
8127 8758 5.105228 GGAAGGATGAAAGAATGATTTGGCA 60.105 40.000 0.00 0.00 0.00 4.92
8192 8823 9.750125 AAATTCACTTTGTTCATTCCTTACTTC 57.250 29.630 0.00 0.00 0.00 3.01
8216 8847 3.563261 CCCACCCTGATTATCACACCAAA 60.563 47.826 0.00 0.00 0.00 3.28
8235 8866 1.133181 TCATCCAACTGCTCCACCCA 61.133 55.000 0.00 0.00 0.00 4.51
8296 8927 4.224594 TGACATCTTTCCAGCTTCTCATCT 59.775 41.667 0.00 0.00 0.00 2.90
8320 10387 0.445436 GTTCAGTGCTTCATGCCTCG 59.555 55.000 0.00 0.00 42.00 4.63
8342 10409 2.045047 TCTCTCTCCAACTGAATCCCCT 59.955 50.000 0.00 0.00 0.00 4.79
8368 10435 9.476202 AATAAGCTACAAAAATGAAAACCAGAC 57.524 29.630 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.