Multiple sequence alignment - TraesCS5B01G233900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G233900 chr5B 100.000 4307 0 0 1 4307 411810328 411814634 0.000000e+00 7954
1 TraesCS5B01G233900 chr5D 94.505 1729 72 7 2589 4304 350997832 350999550 0.000000e+00 2645
2 TraesCS5B01G233900 chr5D 89.172 1376 56 45 1 1333 350995228 350996553 0.000000e+00 1629
3 TraesCS5B01G233900 chr5D 85.801 993 89 19 1631 2610 350996771 350997724 0.000000e+00 1005
4 TraesCS5B01G233900 chr5A 95.882 1360 51 5 2589 3945 451467285 451468642 0.000000e+00 2196
5 TraesCS5B01G233900 chr5A 92.066 1210 64 16 128 1325 451464806 451465995 0.000000e+00 1674
6 TraesCS5B01G233900 chr5A 82.822 652 60 19 1977 2610 451466566 451467183 1.760000e-148 536
7 TraesCS5B01G233900 chr5A 96.863 255 8 0 4005 4259 451468666 451468920 1.110000e-115 427
8 TraesCS5B01G233900 chr5A 96.667 120 4 0 1 120 451464466 451464585 2.630000e-47 200
9 TraesCS5B01G233900 chr5A 88.073 109 6 1 1881 1989 451466447 451466548 5.850000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G233900 chr5B 411810328 411814634 4306 False 7954.000000 7954 100.000000 1 4307 1 chr5B.!!$F1 4306
1 TraesCS5B01G233900 chr5D 350995228 350999550 4322 False 1759.666667 2645 89.826000 1 4304 3 chr5D.!!$F1 4303
2 TraesCS5B01G233900 chr5A 451464466 451468920 4454 False 859.166667 2196 92.062167 1 4259 6 chr5A.!!$F1 4258

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 1153 0.038744 CAACAAGGGATGGAGCCACT 59.961 55.0 0.0 0.0 0.00 4.00 F
1415 1660 0.033894 GGCCCTCCCGTTTCCATTAA 60.034 55.0 0.0 0.0 0.00 1.40 F
1753 2084 0.329261 CATTGACCTGGGGCTCAAGA 59.671 55.0 0.0 0.0 30.75 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2194 2568 0.037160 TCCCCCTTTTAGCCAACGTC 59.963 55.000 0.0 0.0 0.0 4.34 R
2247 2621 0.603569 TTGCGGAGAGGTCTCACTTC 59.396 55.000 9.2 0.0 44.6 3.01 R
3420 3932 1.837439 TGGGATTAGGCGAGAACATGT 59.163 47.619 0.0 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 6.769822 TCCAAGATATCATGGCTTTTCTCTTC 59.230 38.462 20.01 0.00 34.89 2.87
90 91 7.041098 GGCTTTTCTCTTCTGACACAAGAATAA 60.041 37.037 0.00 0.00 35.67 1.40
120 121 5.779806 ACCTAATCAGTTTCGTTTCATCG 57.220 39.130 0.00 0.00 0.00 3.84
194 409 4.634443 ACTAACTTTTCAGTCGTGCAGTTT 59.366 37.500 0.00 0.00 30.45 2.66
196 411 5.554822 AACTTTTCAGTCGTGCAGTTTAA 57.445 34.783 0.00 0.00 30.45 1.52
197 412 4.905269 ACTTTTCAGTCGTGCAGTTTAAC 58.095 39.130 0.00 0.00 0.00 2.01
198 413 3.579147 TTTCAGTCGTGCAGTTTAACG 57.421 42.857 0.00 0.00 41.11 3.18
199 414 2.212869 TCAGTCGTGCAGTTTAACGT 57.787 45.000 0.00 0.00 40.61 3.99
200 415 1.855978 TCAGTCGTGCAGTTTAACGTG 59.144 47.619 0.00 0.00 40.61 4.49
214 435 7.095355 GCAGTTTAACGTGTATATATTCAGGGG 60.095 40.741 14.16 1.79 0.00 4.79
234 455 4.580580 GGGGTCAATTCAATCATCCACTAC 59.419 45.833 0.00 0.00 0.00 2.73
242 463 5.966636 TCAATCATCCACTACGAATTTCG 57.033 39.130 16.84 16.84 46.93 3.46
244 465 2.546778 TCATCCACTACGAATTTCGGC 58.453 47.619 21.71 0.00 45.59 5.54
249 470 1.801771 CACTACGAATTTCGGCAACCA 59.198 47.619 21.71 0.71 45.59 3.67
253 474 4.696402 ACTACGAATTTCGGCAACCAATTA 59.304 37.500 21.71 2.46 45.59 1.40
351 573 0.326143 TCCACTCGGAATCATCCCCA 60.326 55.000 0.00 0.00 43.37 4.96
449 671 0.251742 CCTGCAAATCCCCCACAGAA 60.252 55.000 0.00 0.00 0.00 3.02
454 676 0.863956 AAATCCCCCACAGAAACCCA 59.136 50.000 0.00 0.00 0.00 4.51
508 731 3.256960 AAAGCCTGGGGAAGCGGA 61.257 61.111 0.00 0.00 0.00 5.54
820 1052 0.832135 TGGGCTTTGACTCGGACTCT 60.832 55.000 0.00 0.00 0.00 3.24
832 1064 2.507324 GACTCTGTTCCTCCGCGC 60.507 66.667 0.00 0.00 0.00 6.86
833 1065 4.421479 ACTCTGTTCCTCCGCGCG 62.421 66.667 25.67 25.67 0.00 6.86
834 1066 4.421479 CTCTGTTCCTCCGCGCGT 62.421 66.667 29.95 0.00 0.00 6.01
835 1067 3.047718 CTCTGTTCCTCCGCGCGTA 62.048 63.158 29.95 13.14 0.00 4.42
836 1068 2.126228 CTGTTCCTCCGCGCGTAA 60.126 61.111 29.95 15.57 0.00 3.18
843 1076 1.548973 CCTCCGCGCGTAATGTGATC 61.549 60.000 29.95 0.00 0.00 2.92
849 1082 1.258982 GCGCGTAATGTGATCTTCAGG 59.741 52.381 8.43 0.00 0.00 3.86
854 1087 4.024556 GCGTAATGTGATCTTCAGGATTGG 60.025 45.833 0.00 0.00 34.33 3.16
858 1091 7.042456 CGTAATGTGATCTTCAGGATTGGTTAG 60.042 40.741 0.00 0.00 34.33 2.34
860 1093 6.867519 TGTGATCTTCAGGATTGGTTAGTA 57.132 37.500 0.00 0.00 34.33 1.82
918 1152 0.967380 CCAACAAGGGATGGAGCCAC 60.967 60.000 0.00 0.00 39.20 5.01
919 1153 0.038744 CAACAAGGGATGGAGCCACT 59.961 55.000 0.00 0.00 0.00 4.00
920 1154 0.329596 AACAAGGGATGGAGCCACTC 59.670 55.000 0.00 0.00 0.00 3.51
936 1172 1.293498 CTCTCGGTGGTGTTCCCTG 59.707 63.158 0.00 0.00 0.00 4.45
976 1212 1.501654 AAGGAGGTTGGGAGGGAAGC 61.502 60.000 0.00 0.00 0.00 3.86
1152 1391 0.461516 TCGTCATCGGCGACTACTCT 60.462 55.000 13.76 0.00 37.69 3.24
1210 1449 6.479001 CGTCTCCGTCAAGGTAATTCATTTAT 59.521 38.462 0.00 0.00 41.99 1.40
1212 1451 6.260050 TCTCCGTCAAGGTAATTCATTTATGC 59.740 38.462 0.00 0.00 41.99 3.14
1213 1452 5.298276 TCCGTCAAGGTAATTCATTTATGCC 59.702 40.000 0.00 0.00 41.99 4.40
1219 1458 7.986320 TCAAGGTAATTCATTTATGCCCATTTG 59.014 33.333 0.00 0.00 0.00 2.32
1264 1504 2.426738 CGGTCCATAAATGCAATGTGGT 59.573 45.455 15.25 0.00 0.00 4.16
1266 1506 4.497340 CGGTCCATAAATGCAATGTGGTAC 60.497 45.833 15.25 12.33 0.00 3.34
1267 1507 4.644685 GGTCCATAAATGCAATGTGGTACT 59.355 41.667 15.25 0.00 0.00 2.73
1268 1508 5.825679 GGTCCATAAATGCAATGTGGTACTA 59.174 40.000 15.25 0.00 0.00 1.82
1269 1509 6.017109 GGTCCATAAATGCAATGTGGTACTAG 60.017 42.308 15.25 0.00 0.00 2.57
1270 1510 6.017109 GTCCATAAATGCAATGTGGTACTAGG 60.017 42.308 15.25 0.00 0.00 3.02
1272 1512 6.321181 CCATAAATGCAATGTGGTACTAGGTT 59.679 38.462 9.62 0.00 0.00 3.50
1273 1513 7.500892 CCATAAATGCAATGTGGTACTAGGTTA 59.499 37.037 9.62 0.00 0.00 2.85
1274 1514 9.066892 CATAAATGCAATGTGGTACTAGGTTAT 57.933 33.333 0.00 0.00 0.00 1.89
1303 1543 3.189910 GGAAGGATTTAACGTCCAACACC 59.810 47.826 8.40 0.00 38.25 4.16
1305 1545 2.145536 GGATTTAACGTCCAACACCGT 58.854 47.619 0.00 0.00 39.32 4.83
1333 1578 3.969250 GATGAGGGTTTGCCGCGGA 62.969 63.158 33.48 11.82 34.97 5.54
1334 1579 3.561120 ATGAGGGTTTGCCGCGGAA 62.561 57.895 33.48 19.06 34.97 4.30
1339 1584 2.127383 GTTTGCCGCGGAAGAACG 60.127 61.111 33.48 0.00 0.00 3.95
1341 1586 1.888172 TTTGCCGCGGAAGAACGAA 60.888 52.632 33.48 14.11 35.47 3.85
1342 1587 1.231958 TTTGCCGCGGAAGAACGAAT 61.232 50.000 33.48 0.00 35.47 3.34
1343 1588 1.632046 TTGCCGCGGAAGAACGAATC 61.632 55.000 33.48 7.30 35.47 2.52
1344 1589 2.098233 GCCGCGGAAGAACGAATCA 61.098 57.895 33.48 0.00 35.47 2.57
1345 1590 1.429148 GCCGCGGAAGAACGAATCAT 61.429 55.000 33.48 0.00 35.47 2.45
1348 1593 1.651987 GCGGAAGAACGAATCATCCA 58.348 50.000 14.33 0.00 44.54 3.41
1349 1594 2.213499 GCGGAAGAACGAATCATCCAT 58.787 47.619 14.33 0.00 44.54 3.41
1350 1595 2.221981 GCGGAAGAACGAATCATCCATC 59.778 50.000 14.33 5.13 44.54 3.51
1351 1596 2.472861 CGGAAGAACGAATCATCCATCG 59.527 50.000 14.33 0.00 44.54 3.84
1352 1597 2.802816 GGAAGAACGAATCATCCATCGG 59.197 50.000 10.78 0.00 43.89 4.18
1353 1598 3.492656 GGAAGAACGAATCATCCATCGGA 60.493 47.826 10.78 0.00 43.89 4.55
1354 1599 4.310769 GAAGAACGAATCATCCATCGGAT 58.689 43.478 0.00 0.00 44.21 4.18
1357 1602 5.853936 AGAACGAATCATCCATCGGATTTA 58.146 37.500 0.00 0.00 39.79 1.40
1358 1603 6.467677 AGAACGAATCATCCATCGGATTTAT 58.532 36.000 0.00 0.00 39.79 1.40
1359 1604 6.936900 AGAACGAATCATCCATCGGATTTATT 59.063 34.615 0.00 0.00 39.79 1.40
1360 1605 7.445402 AGAACGAATCATCCATCGGATTTATTT 59.555 33.333 0.00 0.00 39.79 1.40
1362 1607 8.792830 ACGAATCATCCATCGGATTTATTTAT 57.207 30.769 0.00 0.00 39.79 1.40
1363 1608 9.884636 ACGAATCATCCATCGGATTTATTTATA 57.115 29.630 0.00 0.00 39.79 0.98
1393 1638 5.964958 TTTTTCACATCATCAGAAGGGAC 57.035 39.130 0.00 0.00 0.00 4.46
1394 1639 4.639078 TTTCACATCATCAGAAGGGACA 57.361 40.909 0.00 0.00 0.00 4.02
1395 1640 4.639078 TTCACATCATCAGAAGGGACAA 57.361 40.909 0.00 0.00 0.00 3.18
1396 1641 4.212143 TCACATCATCAGAAGGGACAAG 57.788 45.455 0.00 0.00 0.00 3.16
1397 1642 3.054875 TCACATCATCAGAAGGGACAAGG 60.055 47.826 0.00 0.00 0.00 3.61
1398 1643 2.295885 CATCATCAGAAGGGACAAGGC 58.704 52.381 0.00 0.00 0.00 4.35
1399 1644 0.620556 TCATCAGAAGGGACAAGGCC 59.379 55.000 0.00 0.00 0.00 5.19
1407 1652 3.647771 GGACAAGGCCCTCCCGTT 61.648 66.667 0.00 0.00 39.21 4.44
1408 1653 2.434774 GACAAGGCCCTCCCGTTT 59.565 61.111 0.00 0.00 39.21 3.60
1409 1654 1.674651 GACAAGGCCCTCCCGTTTC 60.675 63.158 0.00 0.00 39.21 2.78
1410 1655 2.361230 CAAGGCCCTCCCGTTTCC 60.361 66.667 0.00 0.00 39.21 3.13
1411 1656 2.856988 AAGGCCCTCCCGTTTCCA 60.857 61.111 0.00 0.00 39.21 3.53
1412 1657 2.238701 AAGGCCCTCCCGTTTCCAT 61.239 57.895 0.00 0.00 39.21 3.41
1413 1658 1.800229 AAGGCCCTCCCGTTTCCATT 61.800 55.000 0.00 0.00 39.21 3.16
1414 1659 0.917333 AGGCCCTCCCGTTTCCATTA 60.917 55.000 0.00 0.00 39.21 1.90
1415 1660 0.033894 GGCCCTCCCGTTTCCATTAA 60.034 55.000 0.00 0.00 0.00 1.40
1416 1661 1.617533 GGCCCTCCCGTTTCCATTAAA 60.618 52.381 0.00 0.00 0.00 1.52
1417 1662 2.172679 GCCCTCCCGTTTCCATTAAAA 58.827 47.619 0.00 0.00 0.00 1.52
1418 1663 2.563620 GCCCTCCCGTTTCCATTAAAAA 59.436 45.455 0.00 0.00 0.00 1.94
1419 1664 3.196901 GCCCTCCCGTTTCCATTAAAAAT 59.803 43.478 0.00 0.00 0.00 1.82
1420 1665 4.754322 CCCTCCCGTTTCCATTAAAAATG 58.246 43.478 0.00 0.00 0.00 2.32
1421 1666 4.464597 CCCTCCCGTTTCCATTAAAAATGA 59.535 41.667 1.23 0.00 0.00 2.57
1422 1667 5.394115 CCCTCCCGTTTCCATTAAAAATGAG 60.394 44.000 1.23 0.00 0.00 2.90
1423 1668 5.417580 CCTCCCGTTTCCATTAAAAATGAGA 59.582 40.000 1.23 0.00 0.00 3.27
1424 1669 6.262193 TCCCGTTTCCATTAAAAATGAGAC 57.738 37.500 1.23 0.00 0.00 3.36
1425 1670 5.184287 TCCCGTTTCCATTAAAAATGAGACC 59.816 40.000 1.23 0.00 0.00 3.85
1426 1671 5.047660 CCCGTTTCCATTAAAAATGAGACCA 60.048 40.000 1.23 0.00 0.00 4.02
1427 1672 6.092748 CCGTTTCCATTAAAAATGAGACCAG 58.907 40.000 1.23 0.00 0.00 4.00
1428 1673 5.572896 CGTTTCCATTAAAAATGAGACCAGC 59.427 40.000 1.23 0.00 0.00 4.85
1429 1674 6.454795 GTTTCCATTAAAAATGAGACCAGCA 58.545 36.000 1.23 0.00 0.00 4.41
1430 1675 5.902613 TCCATTAAAAATGAGACCAGCAG 57.097 39.130 1.23 0.00 0.00 4.24
1431 1676 4.706476 TCCATTAAAAATGAGACCAGCAGG 59.294 41.667 0.00 0.00 42.21 4.85
1447 1692 5.730550 CCAGCAGGTTCAGTAGTTATTACA 58.269 41.667 0.00 0.00 34.56 2.41
1448 1693 6.170506 CCAGCAGGTTCAGTAGTTATTACAA 58.829 40.000 0.00 0.00 34.56 2.41
1449 1694 6.653320 CCAGCAGGTTCAGTAGTTATTACAAA 59.347 38.462 0.00 0.00 34.56 2.83
1450 1695 7.174253 CCAGCAGGTTCAGTAGTTATTACAAAA 59.826 37.037 0.00 0.00 34.56 2.44
1451 1696 8.230486 CAGCAGGTTCAGTAGTTATTACAAAAG 58.770 37.037 0.00 0.00 34.56 2.27
1452 1697 7.937394 AGCAGGTTCAGTAGTTATTACAAAAGT 59.063 33.333 0.00 0.00 34.56 2.66
1453 1698 8.228464 GCAGGTTCAGTAGTTATTACAAAAGTC 58.772 37.037 0.00 0.00 34.56 3.01
1454 1699 8.718734 CAGGTTCAGTAGTTATTACAAAAGTCC 58.281 37.037 0.00 0.00 34.56 3.85
1455 1700 8.434392 AGGTTCAGTAGTTATTACAAAAGTCCA 58.566 33.333 0.00 0.00 34.56 4.02
1456 1701 8.501580 GGTTCAGTAGTTATTACAAAAGTCCAC 58.498 37.037 0.00 0.00 34.56 4.02
1457 1702 8.501580 GTTCAGTAGTTATTACAAAAGTCCACC 58.498 37.037 0.00 0.00 34.56 4.61
1458 1703 7.737869 TCAGTAGTTATTACAAAAGTCCACCA 58.262 34.615 0.00 0.00 34.56 4.17
1459 1704 7.876068 TCAGTAGTTATTACAAAAGTCCACCAG 59.124 37.037 0.00 0.00 34.56 4.00
1460 1705 7.119262 CAGTAGTTATTACAAAAGTCCACCAGG 59.881 40.741 0.00 0.00 34.56 4.45
1461 1706 5.948842 AGTTATTACAAAAGTCCACCAGGT 58.051 37.500 0.00 0.00 35.89 4.00
1462 1707 6.370453 AGTTATTACAAAAGTCCACCAGGTT 58.630 36.000 0.00 0.00 35.89 3.50
1463 1708 6.489022 AGTTATTACAAAAGTCCACCAGGTTC 59.511 38.462 0.00 0.00 35.89 3.62
1464 1709 2.818751 ACAAAAGTCCACCAGGTTCA 57.181 45.000 0.00 0.00 35.89 3.18
1465 1710 2.654863 ACAAAAGTCCACCAGGTTCAG 58.345 47.619 0.00 0.00 35.89 3.02
1466 1711 2.025321 ACAAAAGTCCACCAGGTTCAGT 60.025 45.455 0.00 0.00 35.89 3.41
1467 1712 3.201266 ACAAAAGTCCACCAGGTTCAGTA 59.799 43.478 0.00 0.00 35.89 2.74
1468 1713 3.771577 AAAGTCCACCAGGTTCAGTAG 57.228 47.619 0.00 0.00 35.89 2.57
1469 1714 0.977395 AGTCCACCAGGTTCAGTAGC 59.023 55.000 0.00 0.00 35.89 3.58
1470 1715 0.685097 GTCCACCAGGTTCAGTAGCA 59.315 55.000 0.00 0.00 35.89 3.49
1471 1716 1.071699 GTCCACCAGGTTCAGTAGCAA 59.928 52.381 0.00 0.00 35.89 3.91
1472 1717 1.985159 TCCACCAGGTTCAGTAGCAAT 59.015 47.619 0.00 0.00 35.89 3.56
1473 1718 2.375174 TCCACCAGGTTCAGTAGCAATT 59.625 45.455 0.00 0.00 35.89 2.32
1474 1719 3.157087 CCACCAGGTTCAGTAGCAATTT 58.843 45.455 0.00 0.00 0.00 1.82
1475 1720 3.057315 CCACCAGGTTCAGTAGCAATTTG 60.057 47.826 0.00 0.00 0.00 2.32
1476 1721 3.820467 CACCAGGTTCAGTAGCAATTTGA 59.180 43.478 0.00 0.00 0.00 2.69
1477 1722 4.278170 CACCAGGTTCAGTAGCAATTTGAA 59.722 41.667 0.00 0.00 0.00 2.69
1478 1723 4.892934 ACCAGGTTCAGTAGCAATTTGAAA 59.107 37.500 0.00 0.00 33.10 2.69
1479 1724 5.010012 ACCAGGTTCAGTAGCAATTTGAAAG 59.990 40.000 0.00 0.00 33.10 2.62
1480 1725 5.464168 CAGGTTCAGTAGCAATTTGAAAGG 58.536 41.667 0.00 0.00 33.10 3.11
1481 1726 5.241506 CAGGTTCAGTAGCAATTTGAAAGGA 59.758 40.000 0.00 0.00 33.10 3.36
1482 1727 5.833131 AGGTTCAGTAGCAATTTGAAAGGAA 59.167 36.000 0.00 0.00 33.10 3.36
1483 1728 6.323739 AGGTTCAGTAGCAATTTGAAAGGAAA 59.676 34.615 0.00 0.00 33.10 3.13
1484 1729 6.983890 GGTTCAGTAGCAATTTGAAAGGAAAA 59.016 34.615 0.00 0.00 33.10 2.29
1485 1730 7.494298 GGTTCAGTAGCAATTTGAAAGGAAAAA 59.506 33.333 0.00 0.00 33.10 1.94
1486 1731 8.328146 GTTCAGTAGCAATTTGAAAGGAAAAAC 58.672 33.333 0.00 0.00 33.10 2.43
1487 1732 7.551585 TCAGTAGCAATTTGAAAGGAAAAACA 58.448 30.769 0.00 0.00 0.00 2.83
1488 1733 7.706179 TCAGTAGCAATTTGAAAGGAAAAACAG 59.294 33.333 0.00 0.00 0.00 3.16
1489 1734 6.986231 AGTAGCAATTTGAAAGGAAAAACAGG 59.014 34.615 0.00 0.00 0.00 4.00
1490 1735 5.125356 AGCAATTTGAAAGGAAAAACAGGG 58.875 37.500 0.00 0.00 0.00 4.45
1491 1736 5.104569 AGCAATTTGAAAGGAAAAACAGGGA 60.105 36.000 0.00 0.00 0.00 4.20
1492 1737 5.588246 GCAATTTGAAAGGAAAAACAGGGAA 59.412 36.000 0.00 0.00 0.00 3.97
1493 1738 6.262944 GCAATTTGAAAGGAAAAACAGGGAAT 59.737 34.615 0.00 0.00 0.00 3.01
1494 1739 7.443879 GCAATTTGAAAGGAAAAACAGGGAATA 59.556 33.333 0.00 0.00 0.00 1.75
1495 1740 9.506018 CAATTTGAAAGGAAAAACAGGGAATAT 57.494 29.630 0.00 0.00 0.00 1.28
1498 1743 9.990360 TTTGAAAGGAAAAACAGGGAATATAAC 57.010 29.630 0.00 0.00 0.00 1.89
1499 1744 8.713708 TGAAAGGAAAAACAGGGAATATAACA 57.286 30.769 0.00 0.00 0.00 2.41
1500 1745 8.581578 TGAAAGGAAAAACAGGGAATATAACAC 58.418 33.333 0.00 0.00 0.00 3.32
1501 1746 7.476540 AAGGAAAAACAGGGAATATAACACC 57.523 36.000 0.00 0.00 0.00 4.16
1502 1747 6.557568 AGGAAAAACAGGGAATATAACACCA 58.442 36.000 0.00 0.00 0.00 4.17
1503 1748 6.663523 AGGAAAAACAGGGAATATAACACCAG 59.336 38.462 0.00 0.00 0.00 4.00
1504 1749 5.914898 AAAACAGGGAATATAACACCAGC 57.085 39.130 0.00 0.00 0.00 4.85
1505 1750 4.862641 AACAGGGAATATAACACCAGCT 57.137 40.909 0.00 0.00 0.00 4.24
1506 1751 4.862641 ACAGGGAATATAACACCAGCTT 57.137 40.909 0.00 0.00 0.00 3.74
1507 1752 4.781934 ACAGGGAATATAACACCAGCTTC 58.218 43.478 0.00 0.00 0.00 3.86
1508 1753 4.227300 ACAGGGAATATAACACCAGCTTCA 59.773 41.667 0.00 0.00 0.00 3.02
1509 1754 4.818546 CAGGGAATATAACACCAGCTTCAG 59.181 45.833 0.00 0.00 0.00 3.02
1510 1755 4.475016 AGGGAATATAACACCAGCTTCAGT 59.525 41.667 0.00 0.00 0.00 3.41
1511 1756 5.665812 AGGGAATATAACACCAGCTTCAGTA 59.334 40.000 0.00 0.00 0.00 2.74
1512 1757 5.992217 GGGAATATAACACCAGCTTCAGTAG 59.008 44.000 0.00 0.00 0.00 2.57
1513 1758 6.408206 GGGAATATAACACCAGCTTCAGTAGT 60.408 42.308 0.00 0.00 0.00 2.73
1514 1759 7.048512 GGAATATAACACCAGCTTCAGTAGTT 58.951 38.462 0.00 0.00 0.00 2.24
1515 1760 8.202137 GGAATATAACACCAGCTTCAGTAGTTA 58.798 37.037 0.00 0.00 0.00 2.24
1516 1761 8.943909 AATATAACACCAGCTTCAGTAGTTAC 57.056 34.615 0.00 0.00 0.00 2.50
1517 1762 4.957684 AACACCAGCTTCAGTAGTTACT 57.042 40.909 0.00 0.00 36.90 2.24
1576 1865 7.553044 GGAGTATATATTTGATCGGAAAAGGGG 59.447 40.741 0.00 0.00 0.00 4.79
1577 1866 8.214721 AGTATATATTTGATCGGAAAAGGGGA 57.785 34.615 0.00 0.00 0.00 4.81
1579 1868 7.761038 ATATATTTGATCGGAAAAGGGGAAC 57.239 36.000 0.00 0.00 0.00 3.62
1581 1870 0.978151 TGATCGGAAAAGGGGAACGA 59.022 50.000 0.00 0.00 38.00 3.85
1583 1872 0.390735 ATCGGAAAAGGGGAACGACG 60.391 55.000 0.00 0.00 36.32 5.12
1590 1879 2.311124 AAGGGGAACGACGATGAATC 57.689 50.000 0.00 0.00 0.00 2.52
1603 1892 4.527944 ACGATGAATCTACAGAGACTGGA 58.472 43.478 0.00 0.00 35.51 3.86
1619 1908 6.385176 AGAGACTGGATTGATCTGTTAATGGA 59.615 38.462 0.00 0.00 0.00 3.41
1621 1910 6.157645 AGACTGGATTGATCTGTTAATGGAGT 59.842 38.462 0.00 0.00 0.00 3.85
1622 1911 7.345653 AGACTGGATTGATCTGTTAATGGAGTA 59.654 37.037 0.00 0.00 0.00 2.59
1623 1912 8.038862 ACTGGATTGATCTGTTAATGGAGTAT 57.961 34.615 0.00 0.00 0.00 2.12
1624 1913 8.497745 ACTGGATTGATCTGTTAATGGAGTATT 58.502 33.333 0.00 0.00 0.00 1.89
1640 1971 8.693120 ATGGAGTATTAGTTAAGTCATCGAGA 57.307 34.615 0.00 0.00 0.00 4.04
1652 1983 3.374678 AGTCATCGAGAGTAGAAACGGTC 59.625 47.826 0.00 0.00 0.00 4.79
1662 1993 2.445565 AGAAACGGTCGGTAAAGTCC 57.554 50.000 0.00 0.00 0.00 3.85
1664 1995 3.157087 AGAAACGGTCGGTAAAGTCCTA 58.843 45.455 0.00 0.00 0.00 2.94
1676 2007 8.654215 GTCGGTAAAGTCCTAAGAAAATTGTAG 58.346 37.037 0.00 0.00 0.00 2.74
1678 2009 7.118680 CGGTAAAGTCCTAAGAAAATTGTAGCA 59.881 37.037 0.00 0.00 0.00 3.49
1689 2020 7.054491 AGAAAATTGTAGCAAGTCATTGGTT 57.946 32.000 0.00 0.00 44.57 3.67
1700 2031 5.163519 GCAAGTCATTGGTTGCTATTACCAT 60.164 40.000 14.03 0.00 44.70 3.55
1701 2032 6.498304 CAAGTCATTGGTTGCTATTACCATC 58.502 40.000 0.00 0.00 44.70 3.51
1712 2043 5.428253 TGCTATTACCATCTGGAAAGTCAC 58.572 41.667 2.55 0.00 38.94 3.67
1740 2071 9.160496 GATTCATTGGGATATCTCTACATTGAC 57.840 37.037 3.79 0.00 0.00 3.18
1751 2082 1.281867 CTACATTGACCTGGGGCTCAA 59.718 52.381 0.00 0.00 31.38 3.02
1753 2084 0.329261 CATTGACCTGGGGCTCAAGA 59.671 55.000 0.00 0.00 30.75 3.02
1779 2110 4.273969 TGGTTGGTCGTACTGAAAAACATC 59.726 41.667 0.00 0.00 0.00 3.06
1846 2181 3.928343 GTGCGTGCACACCTAAAAA 57.072 47.368 19.45 0.00 45.53 1.94
1862 2197 8.914011 ACACCTAAAAAGAACAAGCTAGAAAAT 58.086 29.630 0.00 0.00 0.00 1.82
1875 2210 7.013274 ACAAGCTAGAAAATGTTTTGCTAGTGA 59.987 33.333 13.85 0.00 34.31 3.41
1931 2266 6.288941 TGATCGATAGTTTACCAAAGGTGA 57.711 37.500 0.00 0.00 35.45 4.02
1932 2267 6.703319 TGATCGATAGTTTACCAAAGGTGAA 58.297 36.000 0.00 0.00 35.45 3.18
1933 2268 7.162761 TGATCGATAGTTTACCAAAGGTGAAA 58.837 34.615 0.00 0.00 33.09 2.69
1934 2269 7.333423 TGATCGATAGTTTACCAAAGGTGAAAG 59.667 37.037 0.00 0.00 33.09 2.62
1935 2270 5.935789 TCGATAGTTTACCAAAGGTGAAAGG 59.064 40.000 0.00 0.00 33.09 3.11
1936 2271 5.704053 CGATAGTTTACCAAAGGTGAAAGGT 59.296 40.000 0.00 0.00 36.19 3.50
1937 2272 6.348213 CGATAGTTTACCAAAGGTGAAAGGTG 60.348 42.308 0.00 0.00 36.19 4.00
1992 2359 9.350357 CATCCTTCAACATTGAATTCACTAAAG 57.650 33.333 7.89 6.46 45.26 1.85
2022 2389 7.552458 ACATAATGAAGCACAACGATGATTA 57.448 32.000 0.00 0.00 0.00 1.75
2023 2390 8.158169 ACATAATGAAGCACAACGATGATTAT 57.842 30.769 0.00 0.00 0.00 1.28
2024 2391 8.623903 ACATAATGAAGCACAACGATGATTATT 58.376 29.630 0.00 0.22 0.00 1.40
2074 2443 8.740123 TTCTGTTAATCTGGAGTTTTTACACA 57.260 30.769 0.00 0.00 0.00 3.72
2078 2447 7.990886 TGTTAATCTGGAGTTTTTACACAGACT 59.009 33.333 0.00 0.00 40.56 3.24
2100 2469 9.013229 AGACTTTGAATTATATGTGCTGTTTCA 57.987 29.630 0.00 0.00 0.00 2.69
2102 2471 9.630098 ACTTTGAATTATATGTGCTGTTTCAAG 57.370 29.630 0.00 0.00 34.31 3.02
2112 2481 6.882610 TGTGCTGTTTCAAGATATTTCTGT 57.117 33.333 0.00 0.00 30.72 3.41
2115 2484 7.648908 TGTGCTGTTTCAAGATATTTCTGTTTG 59.351 33.333 0.00 0.00 30.72 2.93
2116 2485 7.862372 GTGCTGTTTCAAGATATTTCTGTTTGA 59.138 33.333 0.00 0.00 30.72 2.69
2117 2486 8.579006 TGCTGTTTCAAGATATTTCTGTTTGAT 58.421 29.630 0.00 0.00 30.72 2.57
2207 2581 7.040340 TCCATATCAAAAAGACGTTGGCTAAAA 60.040 33.333 0.00 0.00 0.00 1.52
2215 2589 1.133419 ACGTTGGCTAAAAGGGGGAAA 60.133 47.619 0.00 0.00 0.00 3.13
2218 2592 3.441101 GTTGGCTAAAAGGGGGAAAGAT 58.559 45.455 0.00 0.00 0.00 2.40
2219 2593 3.382083 TGGCTAAAAGGGGGAAAGATC 57.618 47.619 0.00 0.00 0.00 2.75
2242 2616 3.815401 CCTCCTTTAACTGTCCACTGTTG 59.185 47.826 11.15 0.00 38.27 3.33
2244 2618 2.884639 CCTTTAACTGTCCACTGTTGGG 59.115 50.000 11.15 7.51 44.11 4.12
2247 2621 2.930826 AACTGTCCACTGTTGGGTAG 57.069 50.000 1.53 0.00 44.11 3.18
2262 2636 2.291670 TGGGTAGAAGTGAGACCTCTCC 60.292 54.545 0.00 0.00 42.20 3.71
2359 2733 2.629336 ATTCCAGCCACTAAGCTAGC 57.371 50.000 6.62 6.62 42.61 3.42
2379 2753 1.802960 CGCTCAGTTCTCAAGCATGTT 59.197 47.619 0.00 0.00 35.76 2.71
2380 2754 2.225019 CGCTCAGTTCTCAAGCATGTTT 59.775 45.455 0.00 0.00 35.76 2.83
2384 2758 5.366829 TCAGTTCTCAAGCATGTTTCATG 57.633 39.130 5.49 5.49 0.00 3.07
2418 2792 7.249186 ACAATCACATGGTTTTGATGTTTTG 57.751 32.000 0.00 0.00 32.63 2.44
2442 2816 5.241728 GGTGCTTTACTGAAGGAAACAGAAT 59.758 40.000 0.00 0.00 37.45 2.40
2489 2864 8.333908 GCACTATTTAATTCAGTCTGAGTCATG 58.666 37.037 2.12 0.00 0.00 3.07
2529 2904 5.201243 ACTAATAAGGACTTGGGAATTGGC 58.799 41.667 0.00 0.00 0.00 4.52
2545 2920 5.011943 GGAATTGGCAGGCATTGGAATTATA 59.988 40.000 0.00 0.00 0.00 0.98
2560 2943 9.799106 ATTGGAATTATAATCCACCTTCTACTG 57.201 33.333 13.15 0.00 46.37 2.74
2573 2956 5.751028 CACCTTCTACTGTTCTATTAGCTGC 59.249 44.000 0.00 0.00 0.00 5.25
2585 2968 6.887376 TCTATTAGCTGCAACTTTAGTTCG 57.113 37.500 1.02 0.00 35.83 3.95
2592 2975 5.348997 AGCTGCAACTTTAGTTCGATAGTTC 59.651 40.000 1.02 0.00 35.83 3.01
2593 2976 5.348997 GCTGCAACTTTAGTTCGATAGTTCT 59.651 40.000 0.00 0.00 35.83 3.01
2594 2977 6.128526 GCTGCAACTTTAGTTCGATAGTTCTT 60.129 38.462 0.00 0.00 35.83 2.52
2595 2978 7.347508 TGCAACTTTAGTTCGATAGTTCTTC 57.652 36.000 0.00 0.00 35.83 2.87
2596 2979 6.926826 TGCAACTTTAGTTCGATAGTTCTTCA 59.073 34.615 0.00 0.00 35.83 3.02
2597 2980 7.095774 TGCAACTTTAGTTCGATAGTTCTTCAC 60.096 37.037 0.00 0.00 35.83 3.18
2598 2981 7.095774 GCAACTTTAGTTCGATAGTTCTTCACA 60.096 37.037 0.00 0.00 35.83 3.58
2599 2982 8.926710 CAACTTTAGTTCGATAGTTCTTCACAT 58.073 33.333 0.00 0.00 35.83 3.21
2600 2983 8.467402 ACTTTAGTTCGATAGTTCTTCACATG 57.533 34.615 0.00 0.00 37.40 3.21
2606 3117 9.469807 AGTTCGATAGTTCTTCACATGATATTC 57.530 33.333 0.00 0.00 37.40 1.75
2629 3140 9.933723 ATTCATTTTCTCTTGTAATTTCTTGGG 57.066 29.630 0.00 0.00 0.00 4.12
2632 3143 7.889873 TTTTCTCTTGTAATTTCTTGGGACA 57.110 32.000 0.00 0.00 0.00 4.02
2640 3151 4.664688 AATTTCTTGGGACAGACTCCAT 57.335 40.909 0.00 0.00 41.63 3.41
2647 3158 2.087646 GGGACAGACTCCATTTTCTGC 58.912 52.381 0.00 0.00 42.67 4.26
2659 3170 5.380043 TCCATTTTCTGCTTTCTTGACTCT 58.620 37.500 0.00 0.00 0.00 3.24
2660 3171 5.471456 TCCATTTTCTGCTTTCTTGACTCTC 59.529 40.000 0.00 0.00 0.00 3.20
2682 3193 7.156000 TCTCTTGTATCCGTTTTGATGTACAA 58.844 34.615 0.00 0.00 36.65 2.41
2928 3439 7.013655 AGGTGAAGTACATGAAATTATGATGGC 59.986 37.037 0.00 0.00 0.00 4.40
2951 3462 6.260714 GGCATACCCATCATTTTTCAATTTCC 59.739 38.462 0.00 0.00 0.00 3.13
3090 3602 2.839486 AAGTCAATGCACTTCTCCGA 57.161 45.000 0.00 0.00 30.25 4.55
3135 3647 6.646267 TGATACCAAAAGGCGTAACTATTCT 58.354 36.000 0.00 0.00 0.00 2.40
3190 3702 3.446799 GACATGAGAGATGTCAGTGAGC 58.553 50.000 0.00 0.00 45.61 4.26
3253 3765 3.369147 CGGTGTTTGCATTTGTGTTTCAA 59.631 39.130 0.00 0.00 0.00 2.69
3348 3860 7.172019 TGCAGCATACATACATTCTATGTTCTG 59.828 37.037 0.00 5.84 41.63 3.02
3430 3942 7.474398 ACAGATGAATGATAACATGTTCTCG 57.526 36.000 15.85 2.43 36.79 4.04
3633 4145 6.661304 AGGTTCTTTCCGAAGTTACTCTTA 57.339 37.500 0.00 0.00 36.40 2.10
3667 4179 2.062890 CTCGTTTATGCCGACGTCGC 62.063 60.000 31.73 25.31 40.03 5.19
3767 4279 3.823304 GGCCAAGAACAGAAGAATGAGTT 59.177 43.478 0.00 0.00 0.00 3.01
3784 4296 1.755380 AGTTAGGGACCAGCGATGTAC 59.245 52.381 0.00 0.00 0.00 2.90
3815 4328 1.694150 TCAAGTACAGGACTGCTTGCT 59.306 47.619 12.14 0.00 38.87 3.91
3898 4411 5.465051 TCTCAGAGACTCTTCAAAATCACG 58.535 41.667 0.98 0.00 0.00 4.35
3926 4439 1.817357 TCTTCTTCAGTGCCTGCATG 58.183 50.000 0.00 0.00 0.00 4.06
3944 4457 5.285651 TGCATGCATACACATTCATGATTG 58.714 37.500 18.46 14.54 37.83 2.67
3945 4458 5.067936 TGCATGCATACACATTCATGATTGA 59.932 36.000 18.46 2.84 37.83 2.57
3946 4459 6.156519 GCATGCATACACATTCATGATTGAT 58.843 36.000 21.32 12.43 37.83 2.57
3947 4460 6.645003 GCATGCATACACATTCATGATTGATT 59.355 34.615 21.32 11.20 37.83 2.57
3957 4470 4.239428 TCATGATTGATTGGCCAAGAGA 57.761 40.909 24.94 11.90 0.00 3.10
3972 4485 4.094590 GCCAAGAGATTCATCAGTGTTCTG 59.905 45.833 0.00 0.00 42.54 3.02
3973 4486 5.243981 CCAAGAGATTCATCAGTGTTCTGT 58.756 41.667 0.00 0.00 41.91 3.41
3974 4487 5.350914 CCAAGAGATTCATCAGTGTTCTGTC 59.649 44.000 0.00 0.00 41.91 3.51
4000 4516 0.549950 AGATCATCAGGCCAACCAGG 59.450 55.000 5.01 0.00 39.06 4.45
4111 4627 2.094494 TCTTGCTGAACATCTCGAGGAC 60.094 50.000 13.56 0.82 0.00 3.85
4237 4753 0.621571 TGGGAGGTTGCCAGAGCTAT 60.622 55.000 0.00 0.00 40.80 2.97
4292 4818 4.402793 TGAGCTACCTTTGCTAAGTAGAGG 59.597 45.833 15.82 2.61 41.30 3.69
4293 4819 4.354662 AGCTACCTTTGCTAAGTAGAGGT 58.645 43.478 15.82 5.75 42.93 3.85
4300 4826 4.803098 TTGCTAAGTAGAGGTGGAAGAC 57.197 45.455 0.00 0.00 0.00 3.01
4303 4829 4.591498 TGCTAAGTAGAGGTGGAAGACAAA 59.409 41.667 0.00 0.00 0.00 2.83
4304 4830 5.248477 TGCTAAGTAGAGGTGGAAGACAAAT 59.752 40.000 0.00 0.00 0.00 2.32
4305 4831 5.582665 GCTAAGTAGAGGTGGAAGACAAATG 59.417 44.000 0.00 0.00 0.00 2.32
4306 4832 5.825593 AAGTAGAGGTGGAAGACAAATGA 57.174 39.130 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.562088 CCTAGGTTAGGTTCTTAAGTCATCTCT 59.438 40.741 0.00 0.00 41.18 3.10
76 77 7.106239 AGGTACCTTGATTATTCTTGTGTCAG 58.894 38.462 9.21 0.00 0.00 3.51
90 91 6.295719 ACGAAACTGATTAGGTACCTTGAT 57.704 37.500 22.11 14.70 0.00 2.57
111 112 7.744276 TGTGATGAGTTAATTTTCGATGAAACG 59.256 33.333 0.00 0.00 30.83 3.60
120 121 9.173939 CACTGAACTTGTGATGAGTTAATTTTC 57.826 33.333 0.00 0.00 37.46 2.29
125 146 6.037062 CACACACTGAACTTGTGATGAGTTAA 59.963 38.462 9.38 0.00 46.18 2.01
130 344 4.135747 TCACACACTGAACTTGTGATGA 57.864 40.909 9.38 6.58 46.18 2.92
194 409 7.600231 TTGACCCCTGAATATATACACGTTA 57.400 36.000 0.00 0.00 0.00 3.18
196 411 6.681729 ATTGACCCCTGAATATATACACGT 57.318 37.500 0.00 0.00 0.00 4.49
197 412 7.158697 TGAATTGACCCCTGAATATATACACG 58.841 38.462 0.00 0.00 0.00 4.49
198 413 8.918202 TTGAATTGACCCCTGAATATATACAC 57.082 34.615 0.00 0.00 0.00 2.90
199 414 9.739276 GATTGAATTGACCCCTGAATATATACA 57.261 33.333 0.00 0.00 0.00 2.29
200 415 9.739276 TGATTGAATTGACCCCTGAATATATAC 57.261 33.333 0.00 0.00 0.00 1.47
214 435 6.662414 TTCGTAGTGGATGATTGAATTGAC 57.338 37.500 0.00 0.00 0.00 3.18
234 455 5.784321 CAAATAATTGGTTGCCGAAATTCG 58.216 37.500 8.62 8.62 34.71 3.34
253 474 8.677300 CAAGTCACTGCATAGTATTAACCAAAT 58.323 33.333 0.00 0.00 34.74 2.32
274 496 4.960354 CGAATTGATCGCTGAATTCAAGTC 59.040 41.667 9.88 5.95 45.89 3.01
351 573 4.376146 GGAACGACTACTACTCGTCCTAT 58.624 47.826 0.00 0.00 43.49 2.57
449 671 0.999712 AGGTCGGGAATTGATGGGTT 59.000 50.000 0.00 0.00 0.00 4.11
508 731 0.986550 CCGGTAACCAGATCCCCCTT 60.987 60.000 0.00 0.00 0.00 3.95
820 1052 1.807981 CATTACGCGCGGAGGAACA 60.808 57.895 35.22 10.97 0.00 3.18
832 1064 5.118990 ACCAATCCTGAAGATCACATTACG 58.881 41.667 0.00 0.00 32.47 3.18
833 1065 7.770897 ACTAACCAATCCTGAAGATCACATTAC 59.229 37.037 0.00 0.00 32.47 1.89
834 1066 7.861629 ACTAACCAATCCTGAAGATCACATTA 58.138 34.615 0.00 0.00 32.47 1.90
835 1067 6.725364 ACTAACCAATCCTGAAGATCACATT 58.275 36.000 0.00 0.00 32.47 2.71
836 1068 6.319048 ACTAACCAATCCTGAAGATCACAT 57.681 37.500 0.00 0.00 32.47 3.21
843 1076 3.433740 GGCCCTACTAACCAATCCTGAAG 60.434 52.174 0.00 0.00 0.00 3.02
849 1082 2.489073 CCATGGGCCCTACTAACCAATC 60.489 54.545 25.70 0.00 36.44 2.67
854 1087 1.844130 CCCCATGGGCCCTACTAAC 59.156 63.158 26.87 0.00 35.35 2.34
877 1111 1.342174 CCATCAGGCCCATTAACATGC 59.658 52.381 0.00 0.00 0.00 4.06
918 1152 1.185618 TCAGGGAACACCACCGAGAG 61.186 60.000 0.00 0.00 43.89 3.20
919 1153 0.761323 TTCAGGGAACACCACCGAGA 60.761 55.000 0.00 0.00 43.89 4.04
920 1154 0.107831 TTTCAGGGAACACCACCGAG 59.892 55.000 0.00 0.00 43.89 4.63
976 1212 1.079543 CCTCTTCCTGCTGGTCACG 60.080 63.158 9.73 0.00 34.23 4.35
1034 1270 2.435663 CCATCCACCACAGCACCA 59.564 61.111 0.00 0.00 0.00 4.17
1210 1449 3.692101 CGGAGTATGTAAACAAATGGGCA 59.308 43.478 0.00 0.00 0.00 5.36
1212 1451 3.066203 GGCGGAGTATGTAAACAAATGGG 59.934 47.826 0.00 0.00 0.00 4.00
1213 1452 3.066203 GGGCGGAGTATGTAAACAAATGG 59.934 47.826 0.00 0.00 0.00 3.16
1219 1458 1.929169 GTTCGGGCGGAGTATGTAAAC 59.071 52.381 0.00 0.00 0.00 2.01
1247 1487 5.827797 ACCTAGTACCACATTGCATTTATGG 59.172 40.000 2.13 4.82 36.46 2.74
1272 1512 9.463902 TGGACGTTAAATCCTTCCATTTTTATA 57.536 29.630 8.19 0.00 37.13 0.98
1273 1513 8.356000 TGGACGTTAAATCCTTCCATTTTTAT 57.644 30.769 8.19 0.00 37.13 1.40
1274 1514 7.762588 TGGACGTTAAATCCTTCCATTTTTA 57.237 32.000 8.19 0.00 37.13 1.52
1275 1515 6.658188 TGGACGTTAAATCCTTCCATTTTT 57.342 33.333 8.19 0.00 37.13 1.94
1296 1536 5.948588 TCATCATTTATTTCACGGTGTTGG 58.051 37.500 8.17 0.00 0.00 3.77
1303 1543 5.516339 GCAAACCCTCATCATTTATTTCACG 59.484 40.000 0.00 0.00 0.00 4.35
1305 1545 5.394005 CGGCAAACCCTCATCATTTATTTCA 60.394 40.000 0.00 0.00 0.00 2.69
1333 1578 3.819564 TCCGATGGATGATTCGTTCTT 57.180 42.857 0.00 0.00 33.60 2.52
1334 1579 4.342862 AATCCGATGGATGATTCGTTCT 57.657 40.909 0.00 0.00 42.27 3.01
1371 1616 5.384336 TGTCCCTTCTGATGATGTGAAAAA 58.616 37.500 0.00 0.00 0.00 1.94
1372 1617 4.984295 TGTCCCTTCTGATGATGTGAAAA 58.016 39.130 0.00 0.00 0.00 2.29
1373 1618 4.639078 TGTCCCTTCTGATGATGTGAAA 57.361 40.909 0.00 0.00 0.00 2.69
1374 1619 4.566278 CCTTGTCCCTTCTGATGATGTGAA 60.566 45.833 0.00 0.00 0.00 3.18
1375 1620 3.054875 CCTTGTCCCTTCTGATGATGTGA 60.055 47.826 0.00 0.00 0.00 3.58
1376 1621 3.276857 CCTTGTCCCTTCTGATGATGTG 58.723 50.000 0.00 0.00 0.00 3.21
1377 1622 2.356535 GCCTTGTCCCTTCTGATGATGT 60.357 50.000 0.00 0.00 0.00 3.06
1378 1623 2.295885 GCCTTGTCCCTTCTGATGATG 58.704 52.381 0.00 0.00 0.00 3.07
1379 1624 1.213926 GGCCTTGTCCCTTCTGATGAT 59.786 52.381 0.00 0.00 0.00 2.45
1380 1625 0.620556 GGCCTTGTCCCTTCTGATGA 59.379 55.000 0.00 0.00 0.00 2.92
1381 1626 0.394899 GGGCCTTGTCCCTTCTGATG 60.395 60.000 0.84 0.00 43.13 3.07
1382 1627 2.002625 GGGCCTTGTCCCTTCTGAT 58.997 57.895 0.84 0.00 43.13 2.90
1383 1628 3.495729 GGGCCTTGTCCCTTCTGA 58.504 61.111 0.84 0.00 43.13 3.27
1390 1635 3.205851 AAACGGGAGGGCCTTGTCC 62.206 63.158 7.89 9.50 0.00 4.02
1391 1636 1.674651 GAAACGGGAGGGCCTTGTC 60.675 63.158 7.89 0.06 0.00 3.18
1392 1637 2.434774 GAAACGGGAGGGCCTTGT 59.565 61.111 7.89 4.08 0.00 3.16
1393 1638 2.361230 GGAAACGGGAGGGCCTTG 60.361 66.667 7.89 3.33 0.00 3.61
1394 1639 1.800229 AATGGAAACGGGAGGGCCTT 61.800 55.000 7.89 0.00 0.00 4.35
1395 1640 0.917333 TAATGGAAACGGGAGGGCCT 60.917 55.000 5.25 5.25 0.00 5.19
1396 1641 0.033894 TTAATGGAAACGGGAGGGCC 60.034 55.000 0.00 0.00 0.00 5.80
1397 1642 1.842052 TTTAATGGAAACGGGAGGGC 58.158 50.000 0.00 0.00 0.00 5.19
1398 1643 4.464597 TCATTTTTAATGGAAACGGGAGGG 59.535 41.667 0.00 0.00 0.00 4.30
1399 1644 5.417580 TCTCATTTTTAATGGAAACGGGAGG 59.582 40.000 0.00 0.00 0.00 4.30
1400 1645 6.322491 GTCTCATTTTTAATGGAAACGGGAG 58.678 40.000 0.00 0.00 0.00 4.30
1401 1646 5.184287 GGTCTCATTTTTAATGGAAACGGGA 59.816 40.000 0.00 0.00 0.00 5.14
1402 1647 5.047660 TGGTCTCATTTTTAATGGAAACGGG 60.048 40.000 0.00 0.00 0.00 5.28
1403 1648 6.019779 TGGTCTCATTTTTAATGGAAACGG 57.980 37.500 0.00 0.00 0.00 4.44
1404 1649 5.572896 GCTGGTCTCATTTTTAATGGAAACG 59.427 40.000 0.00 0.00 0.00 3.60
1405 1650 6.454795 TGCTGGTCTCATTTTTAATGGAAAC 58.545 36.000 0.00 0.00 0.00 2.78
1406 1651 6.295236 CCTGCTGGTCTCATTTTTAATGGAAA 60.295 38.462 0.51 0.00 0.00 3.13
1407 1652 5.185635 CCTGCTGGTCTCATTTTTAATGGAA 59.814 40.000 0.51 0.00 0.00 3.53
1408 1653 4.706476 CCTGCTGGTCTCATTTTTAATGGA 59.294 41.667 0.51 0.00 0.00 3.41
1409 1654 4.463891 ACCTGCTGGTCTCATTTTTAATGG 59.536 41.667 9.88 0.00 44.78 3.16
1410 1655 5.649782 ACCTGCTGGTCTCATTTTTAATG 57.350 39.130 9.88 0.00 44.78 1.90
1424 1669 5.730550 TGTAATAACTACTGAACCTGCTGG 58.269 41.667 8.29 8.29 39.83 4.85
1425 1670 7.667043 TTTGTAATAACTACTGAACCTGCTG 57.333 36.000 0.00 0.00 0.00 4.41
1426 1671 7.937394 ACTTTTGTAATAACTACTGAACCTGCT 59.063 33.333 0.00 0.00 0.00 4.24
1427 1672 8.095937 ACTTTTGTAATAACTACTGAACCTGC 57.904 34.615 0.00 0.00 0.00 4.85
1428 1673 8.718734 GGACTTTTGTAATAACTACTGAACCTG 58.281 37.037 0.00 0.00 0.00 4.00
1429 1674 8.434392 TGGACTTTTGTAATAACTACTGAACCT 58.566 33.333 0.00 0.00 0.00 3.50
1430 1675 8.501580 GTGGACTTTTGTAATAACTACTGAACC 58.498 37.037 0.00 0.00 0.00 3.62
1431 1676 8.501580 GGTGGACTTTTGTAATAACTACTGAAC 58.498 37.037 0.00 0.00 0.00 3.18
1432 1677 8.212312 TGGTGGACTTTTGTAATAACTACTGAA 58.788 33.333 0.00 0.00 0.00 3.02
1433 1678 7.737869 TGGTGGACTTTTGTAATAACTACTGA 58.262 34.615 0.00 0.00 0.00 3.41
1434 1679 7.119262 CCTGGTGGACTTTTGTAATAACTACTG 59.881 40.741 0.00 0.00 34.57 2.74
1435 1680 7.166167 CCTGGTGGACTTTTGTAATAACTACT 58.834 38.462 0.00 0.00 34.57 2.57
1436 1681 6.938596 ACCTGGTGGACTTTTGTAATAACTAC 59.061 38.462 0.00 0.00 37.04 2.73
1437 1682 7.081857 ACCTGGTGGACTTTTGTAATAACTA 57.918 36.000 0.00 0.00 37.04 2.24
1438 1683 5.948842 ACCTGGTGGACTTTTGTAATAACT 58.051 37.500 0.00 0.00 37.04 2.24
1439 1684 6.263617 TGAACCTGGTGGACTTTTGTAATAAC 59.736 38.462 0.00 0.00 37.04 1.89
1440 1685 6.366340 TGAACCTGGTGGACTTTTGTAATAA 58.634 36.000 0.00 0.00 37.04 1.40
1441 1686 5.942961 TGAACCTGGTGGACTTTTGTAATA 58.057 37.500 0.00 0.00 37.04 0.98
1442 1687 4.798882 TGAACCTGGTGGACTTTTGTAAT 58.201 39.130 0.00 0.00 37.04 1.89
1443 1688 4.204012 CTGAACCTGGTGGACTTTTGTAA 58.796 43.478 0.00 0.00 37.04 2.41
1444 1689 3.201266 ACTGAACCTGGTGGACTTTTGTA 59.799 43.478 0.00 0.00 37.04 2.41
1445 1690 2.025321 ACTGAACCTGGTGGACTTTTGT 60.025 45.455 0.00 0.00 37.04 2.83
1446 1691 2.654863 ACTGAACCTGGTGGACTTTTG 58.345 47.619 0.00 0.00 37.04 2.44
1447 1692 3.747708 GCTACTGAACCTGGTGGACTTTT 60.748 47.826 0.00 0.00 37.04 2.27
1448 1693 2.224548 GCTACTGAACCTGGTGGACTTT 60.225 50.000 0.00 0.00 37.04 2.66
1449 1694 1.348036 GCTACTGAACCTGGTGGACTT 59.652 52.381 0.00 0.00 37.04 3.01
1450 1695 0.977395 GCTACTGAACCTGGTGGACT 59.023 55.000 0.00 0.00 37.04 3.85
1451 1696 0.685097 TGCTACTGAACCTGGTGGAC 59.315 55.000 0.00 0.00 37.04 4.02
1452 1697 1.429930 TTGCTACTGAACCTGGTGGA 58.570 50.000 0.00 0.00 37.04 4.02
1453 1698 2.496899 ATTGCTACTGAACCTGGTGG 57.503 50.000 0.00 0.00 39.83 4.61
1454 1699 3.820467 TCAAATTGCTACTGAACCTGGTG 59.180 43.478 0.00 0.00 0.00 4.17
1455 1700 4.098914 TCAAATTGCTACTGAACCTGGT 57.901 40.909 0.00 0.00 0.00 4.00
1456 1701 5.452078 TTTCAAATTGCTACTGAACCTGG 57.548 39.130 0.00 0.00 0.00 4.45
1457 1702 5.241506 TCCTTTCAAATTGCTACTGAACCTG 59.758 40.000 0.00 0.00 0.00 4.00
1458 1703 5.385198 TCCTTTCAAATTGCTACTGAACCT 58.615 37.500 0.00 0.00 0.00 3.50
1459 1704 5.705609 TCCTTTCAAATTGCTACTGAACC 57.294 39.130 0.00 0.00 0.00 3.62
1460 1705 8.328146 GTTTTTCCTTTCAAATTGCTACTGAAC 58.672 33.333 0.00 0.00 0.00 3.18
1461 1706 8.037758 TGTTTTTCCTTTCAAATTGCTACTGAA 58.962 29.630 0.00 0.00 0.00 3.02
1462 1707 7.551585 TGTTTTTCCTTTCAAATTGCTACTGA 58.448 30.769 0.00 0.00 0.00 3.41
1463 1708 7.042523 CCTGTTTTTCCTTTCAAATTGCTACTG 60.043 37.037 0.00 0.00 0.00 2.74
1464 1709 6.986231 CCTGTTTTTCCTTTCAAATTGCTACT 59.014 34.615 0.00 0.00 0.00 2.57
1465 1710 6.202762 CCCTGTTTTTCCTTTCAAATTGCTAC 59.797 38.462 0.00 0.00 0.00 3.58
1466 1711 6.098982 TCCCTGTTTTTCCTTTCAAATTGCTA 59.901 34.615 0.00 0.00 0.00 3.49
1467 1712 5.104569 TCCCTGTTTTTCCTTTCAAATTGCT 60.105 36.000 0.00 0.00 0.00 3.91
1468 1713 5.122519 TCCCTGTTTTTCCTTTCAAATTGC 58.877 37.500 0.00 0.00 0.00 3.56
1469 1714 7.806409 ATTCCCTGTTTTTCCTTTCAAATTG 57.194 32.000 0.00 0.00 0.00 2.32
1472 1717 9.990360 GTTATATTCCCTGTTTTTCCTTTCAAA 57.010 29.630 0.00 0.00 0.00 2.69
1473 1718 9.148879 TGTTATATTCCCTGTTTTTCCTTTCAA 57.851 29.630 0.00 0.00 0.00 2.69
1474 1719 8.581578 GTGTTATATTCCCTGTTTTTCCTTTCA 58.418 33.333 0.00 0.00 0.00 2.69
1475 1720 8.033038 GGTGTTATATTCCCTGTTTTTCCTTTC 58.967 37.037 0.00 0.00 0.00 2.62
1476 1721 7.511028 TGGTGTTATATTCCCTGTTTTTCCTTT 59.489 33.333 0.00 0.00 0.00 3.11
1477 1722 7.013834 TGGTGTTATATTCCCTGTTTTTCCTT 58.986 34.615 0.00 0.00 0.00 3.36
1478 1723 6.557568 TGGTGTTATATTCCCTGTTTTTCCT 58.442 36.000 0.00 0.00 0.00 3.36
1479 1724 6.627287 GCTGGTGTTATATTCCCTGTTTTTCC 60.627 42.308 0.00 0.00 0.00 3.13
1480 1725 6.152831 AGCTGGTGTTATATTCCCTGTTTTTC 59.847 38.462 0.00 0.00 0.00 2.29
1481 1726 6.016555 AGCTGGTGTTATATTCCCTGTTTTT 58.983 36.000 0.00 0.00 0.00 1.94
1482 1727 5.580022 AGCTGGTGTTATATTCCCTGTTTT 58.420 37.500 0.00 0.00 0.00 2.43
1483 1728 5.193099 AGCTGGTGTTATATTCCCTGTTT 57.807 39.130 0.00 0.00 0.00 2.83
1484 1729 4.862641 AGCTGGTGTTATATTCCCTGTT 57.137 40.909 0.00 0.00 0.00 3.16
1485 1730 4.227300 TGAAGCTGGTGTTATATTCCCTGT 59.773 41.667 0.00 0.00 0.00 4.00
1486 1731 4.780815 TGAAGCTGGTGTTATATTCCCTG 58.219 43.478 0.00 0.00 0.00 4.45
1487 1732 4.475016 ACTGAAGCTGGTGTTATATTCCCT 59.525 41.667 0.00 0.00 0.00 4.20
1488 1733 4.781934 ACTGAAGCTGGTGTTATATTCCC 58.218 43.478 0.00 0.00 0.00 3.97
1489 1734 6.583562 ACTACTGAAGCTGGTGTTATATTCC 58.416 40.000 0.00 0.00 0.00 3.01
1490 1735 9.032420 GTAACTACTGAAGCTGGTGTTATATTC 57.968 37.037 0.00 0.00 0.00 1.75
1491 1736 8.759782 AGTAACTACTGAAGCTGGTGTTATATT 58.240 33.333 0.00 0.00 34.72 1.28
1492 1737 8.307582 AGTAACTACTGAAGCTGGTGTTATAT 57.692 34.615 0.00 0.00 34.72 0.86
1493 1738 7.713734 AGTAACTACTGAAGCTGGTGTTATA 57.286 36.000 0.00 0.00 34.72 0.98
1494 1739 6.607004 AGTAACTACTGAAGCTGGTGTTAT 57.393 37.500 0.00 0.00 34.72 1.89
1496 1741 4.957684 AGTAACTACTGAAGCTGGTGTT 57.042 40.909 0.00 0.00 34.72 3.32
1508 1753 4.565652 CCTGCCATGTTTCCAGTAACTACT 60.566 45.833 0.00 0.00 36.90 2.57
1509 1754 3.689649 CCTGCCATGTTTCCAGTAACTAC 59.310 47.826 0.00 0.00 0.00 2.73
1510 1755 3.585289 TCCTGCCATGTTTCCAGTAACTA 59.415 43.478 0.00 0.00 0.00 2.24
1511 1756 2.375174 TCCTGCCATGTTTCCAGTAACT 59.625 45.455 0.00 0.00 0.00 2.24
1512 1757 2.488153 GTCCTGCCATGTTTCCAGTAAC 59.512 50.000 0.00 0.00 0.00 2.50
1513 1758 2.375174 AGTCCTGCCATGTTTCCAGTAA 59.625 45.455 0.00 0.00 0.00 2.24
1514 1759 1.985159 AGTCCTGCCATGTTTCCAGTA 59.015 47.619 0.00 0.00 0.00 2.74
1515 1760 0.773644 AGTCCTGCCATGTTTCCAGT 59.226 50.000 0.00 0.00 0.00 4.00
1516 1761 1.171308 CAGTCCTGCCATGTTTCCAG 58.829 55.000 0.00 0.00 0.00 3.86
1517 1762 3.344703 CAGTCCTGCCATGTTTCCA 57.655 52.632 0.00 0.00 0.00 3.53
1551 1796 8.319146 TCCCCTTTTCCGATCAAATATATACTC 58.681 37.037 0.00 0.00 0.00 2.59
1552 1797 8.214721 TCCCCTTTTCCGATCAAATATATACT 57.785 34.615 0.00 0.00 0.00 2.12
1553 1798 8.727910 GTTCCCCTTTTCCGATCAAATATATAC 58.272 37.037 0.00 0.00 0.00 1.47
1554 1799 7.604927 CGTTCCCCTTTTCCGATCAAATATATA 59.395 37.037 0.00 0.00 0.00 0.86
1555 1800 6.430000 CGTTCCCCTTTTCCGATCAAATATAT 59.570 38.462 0.00 0.00 0.00 0.86
1562 1851 0.978151 TCGTTCCCCTTTTCCGATCA 59.022 50.000 0.00 0.00 0.00 2.92
1576 1865 4.965158 GTCTCTGTAGATTCATCGTCGTTC 59.035 45.833 0.00 0.00 33.30 3.95
1577 1866 4.636648 AGTCTCTGTAGATTCATCGTCGTT 59.363 41.667 0.00 0.00 33.30 3.85
1579 1868 4.522877 CAGTCTCTGTAGATTCATCGTCG 58.477 47.826 0.00 0.00 33.30 5.12
1581 1870 4.527944 TCCAGTCTCTGTAGATTCATCGT 58.472 43.478 0.00 0.00 33.30 3.73
1583 1872 7.048629 TCAATCCAGTCTCTGTAGATTCATC 57.951 40.000 0.00 0.00 33.30 2.92
1590 1879 5.850557 ACAGATCAATCCAGTCTCTGTAG 57.149 43.478 1.88 0.00 43.42 2.74
1623 1912 8.173775 CGTTTCTACTCTCGATGACTTAACTAA 58.826 37.037 0.00 0.00 0.00 2.24
1624 1913 7.201591 CCGTTTCTACTCTCGATGACTTAACTA 60.202 40.741 0.00 0.00 0.00 2.24
1625 1914 6.403418 CCGTTTCTACTCTCGATGACTTAACT 60.403 42.308 0.00 0.00 0.00 2.24
1626 1915 5.738225 CCGTTTCTACTCTCGATGACTTAAC 59.262 44.000 0.00 0.00 0.00 2.01
1627 1916 5.413833 ACCGTTTCTACTCTCGATGACTTAA 59.586 40.000 0.00 0.00 0.00 1.85
1629 1918 3.757493 ACCGTTTCTACTCTCGATGACTT 59.243 43.478 0.00 0.00 0.00 3.01
1635 1966 1.081892 CCGACCGTTTCTACTCTCGA 58.918 55.000 0.00 0.00 0.00 4.04
1638 1969 3.823304 ACTTTACCGACCGTTTCTACTCT 59.177 43.478 0.00 0.00 0.00 3.24
1640 1971 3.057245 GGACTTTACCGACCGTTTCTACT 60.057 47.826 0.00 0.00 0.00 2.57
1647 1978 2.795329 TCTTAGGACTTTACCGACCGT 58.205 47.619 0.00 0.00 34.73 4.83
1652 1983 7.118680 TGCTACAATTTTCTTAGGACTTTACCG 59.881 37.037 0.00 0.00 34.73 4.02
1662 1993 8.299570 ACCAATGACTTGCTACAATTTTCTTAG 58.700 33.333 0.00 0.00 0.00 2.18
1664 1995 7.054491 ACCAATGACTTGCTACAATTTTCTT 57.946 32.000 0.00 0.00 0.00 2.52
1676 2007 4.157656 TGGTAATAGCAACCAATGACTTGC 59.842 41.667 7.31 7.31 43.99 4.01
1689 2020 5.189736 AGTGACTTTCCAGATGGTAATAGCA 59.810 40.000 0.00 0.00 36.34 3.49
1700 2031 5.005740 CCAATGAATCAGTGACTTTCCAGA 58.994 41.667 12.62 0.00 30.53 3.86
1701 2032 4.157289 CCCAATGAATCAGTGACTTTCCAG 59.843 45.833 12.62 0.00 30.53 3.86
1712 2043 9.163899 CAATGTAGAGATATCCCAATGAATCAG 57.836 37.037 0.00 0.00 0.00 2.90
1740 2071 2.271497 CAGCTCTTGAGCCCCAGG 59.729 66.667 17.78 1.20 34.90 4.45
1751 2082 0.603569 CAGTACGACCAACCAGCTCT 59.396 55.000 0.00 0.00 0.00 4.09
1753 2084 1.045407 TTCAGTACGACCAACCAGCT 58.955 50.000 0.00 0.00 0.00 4.24
1756 2087 3.607741 TGTTTTTCAGTACGACCAACCA 58.392 40.909 0.00 0.00 0.00 3.67
1757 2088 4.609783 CGATGTTTTTCAGTACGACCAACC 60.610 45.833 0.00 0.00 0.00 3.77
1758 2089 4.451557 CGATGTTTTTCAGTACGACCAAC 58.548 43.478 0.00 0.00 0.00 3.77
1759 2090 3.495377 CCGATGTTTTTCAGTACGACCAA 59.505 43.478 0.00 0.00 0.00 3.67
1764 2095 5.834239 AAGTACCGATGTTTTTCAGTACG 57.166 39.130 0.00 0.00 36.17 3.67
1835 2170 6.861065 TCTAGCTTGTTCTTTTTAGGTGTG 57.139 37.500 0.00 0.00 0.00 3.82
1846 2181 6.809869 AGCAAAACATTTTCTAGCTTGTTCT 58.190 32.000 0.00 0.00 31.42 3.01
1913 2248 6.489022 ACACCTTTCACCTTTGGTAAACTATC 59.511 38.462 0.00 0.00 32.11 2.08
1931 2266 4.000325 GGTTGAAAGCAAAACACACCTTT 59.000 39.130 0.00 0.00 35.42 3.11
1932 2267 3.007398 TGGTTGAAAGCAAAACACACCTT 59.993 39.130 0.00 0.00 35.42 3.50
1933 2268 2.564947 TGGTTGAAAGCAAAACACACCT 59.435 40.909 0.00 0.00 35.42 4.00
1934 2269 2.929398 CTGGTTGAAAGCAAAACACACC 59.071 45.455 0.00 0.00 35.42 4.16
1935 2270 2.929398 CCTGGTTGAAAGCAAAACACAC 59.071 45.455 0.00 0.00 35.42 3.82
1936 2271 2.093764 CCCTGGTTGAAAGCAAAACACA 60.094 45.455 0.00 0.00 35.42 3.72
1937 2272 2.549926 CCCTGGTTGAAAGCAAAACAC 58.450 47.619 0.00 0.00 35.42 3.32
1992 2359 8.736742 CATCGTTGTGCTTCATTATGTATTTTC 58.263 33.333 0.00 0.00 0.00 2.29
2028 2395 7.669722 ACAGAAAAATTGATAAGGCACTAGGAA 59.330 33.333 0.00 0.00 38.49 3.36
2035 2402 9.859427 CAGATTAACAGAAAAATTGATAAGGCA 57.141 29.630 0.00 0.00 0.00 4.75
2073 2442 9.282247 GAAACAGCACATATAATTCAAAGTCTG 57.718 33.333 0.00 0.00 0.00 3.51
2074 2443 9.013229 TGAAACAGCACATATAATTCAAAGTCT 57.987 29.630 0.00 0.00 0.00 3.24
2128 2499 9.521503 CTATCAACTCTTTTCATCGATACAAGA 57.478 33.333 0.00 5.34 0.00 3.02
2194 2568 0.037160 TCCCCCTTTTAGCCAACGTC 59.963 55.000 0.00 0.00 0.00 4.34
2215 2589 3.519913 GTGGACAGTTAAAGGAGGGATCT 59.480 47.826 0.00 0.00 0.00 2.75
2218 2592 2.637872 CAGTGGACAGTTAAAGGAGGGA 59.362 50.000 0.00 0.00 0.00 4.20
2219 2593 2.372172 ACAGTGGACAGTTAAAGGAGGG 59.628 50.000 0.00 0.00 0.00 4.30
2242 2616 2.380941 GGAGAGGTCTCACTTCTACCC 58.619 57.143 9.20 0.00 44.60 3.69
2244 2618 1.402613 GCGGAGAGGTCTCACTTCTAC 59.597 57.143 9.20 0.00 44.60 2.59
2247 2621 0.603569 TTGCGGAGAGGTCTCACTTC 59.396 55.000 9.20 0.00 44.60 3.01
2311 2685 3.837570 GAACCCACCCACCCGTGTC 62.838 68.421 0.00 0.00 31.47 3.67
2359 2733 1.436600 ACATGCTTGAGAACTGAGCG 58.563 50.000 6.60 0.00 39.23 5.03
2363 2737 5.117355 ACATGAAACATGCTTGAGAACTG 57.883 39.130 6.60 1.48 0.00 3.16
2365 2739 5.112220 TGACATGAAACATGCTTGAGAAC 57.888 39.130 6.60 0.00 0.00 3.01
2379 2753 5.008980 TGTGATTGTAAGGCATGACATGAA 58.991 37.500 19.76 3.63 0.00 2.57
2380 2754 4.587891 TGTGATTGTAAGGCATGACATGA 58.412 39.130 19.76 0.00 0.00 3.07
2384 2758 3.696051 ACCATGTGATTGTAAGGCATGAC 59.304 43.478 0.00 0.00 39.21 3.06
2418 2792 4.134563 TCTGTTTCCTTCAGTAAAGCACC 58.865 43.478 0.00 0.00 33.29 5.01
2457 2831 8.886719 TCAGACTGAATTAAATAGTGCAGATTG 58.113 33.333 1.64 0.00 0.00 2.67
2466 2840 9.814899 AGTCATGACTCAGACTGAATTAAATAG 57.185 33.333 22.89 0.00 43.09 1.73
2529 2904 5.776716 AGGTGGATTATAATTCCAATGCCTG 59.223 40.000 14.45 0.00 35.05 4.85
2545 2920 7.345914 AGCTAATAGAACAGTAGAAGGTGGATT 59.654 37.037 0.00 0.00 0.00 3.01
2560 2943 7.063074 TCGAACTAAAGTTGCAGCTAATAGAAC 59.937 37.037 22.05 15.67 38.56 3.01
2573 2956 8.294341 TGTGAAGAACTATCGAACTAAAGTTG 57.706 34.615 0.00 0.00 38.56 3.16
2606 3117 8.359642 TGTCCCAAGAAATTACAAGAGAAAATG 58.640 33.333 0.00 0.00 0.00 2.32
2611 3122 6.043243 AGTCTGTCCCAAGAAATTACAAGAGA 59.957 38.462 0.00 0.00 0.00 3.10
2613 3124 6.187727 AGTCTGTCCCAAGAAATTACAAGA 57.812 37.500 0.00 0.00 0.00 3.02
2629 3140 4.759183 AGAAAGCAGAAAATGGAGTCTGTC 59.241 41.667 2.90 0.00 42.72 3.51
2632 3143 5.240403 GTCAAGAAAGCAGAAAATGGAGTCT 59.760 40.000 0.00 0.00 0.00 3.24
2640 3151 5.882557 ACAAGAGAGTCAAGAAAGCAGAAAA 59.117 36.000 0.00 0.00 0.00 2.29
2647 3158 5.715070 ACGGATACAAGAGAGTCAAGAAAG 58.285 41.667 0.00 0.00 0.00 2.62
2659 3170 7.915293 ATTGTACATCAAAACGGATACAAGA 57.085 32.000 0.00 0.00 39.62 3.02
2714 3225 7.687941 AACCTTATCTTTCTTGTGTATGGTG 57.312 36.000 0.00 0.00 0.00 4.17
2928 3439 8.885722 CAAGGAAATTGAAAAATGATGGGTATG 58.114 33.333 0.00 0.00 41.83 2.39
2951 3462 4.036262 TGTCATCCAAACGAGGAAAACAAG 59.964 41.667 0.00 0.00 41.92 3.16
3090 3602 9.128107 GTATCAACAAAATTGATGAAACACGAT 57.872 29.630 9.68 0.00 42.11 3.73
3190 3702 2.969628 AAGACCCTAGCATTCGTCAG 57.030 50.000 0.00 0.00 0.00 3.51
3420 3932 1.837439 TGGGATTAGGCGAGAACATGT 59.163 47.619 0.00 0.00 0.00 3.21
3430 3942 5.930135 TCTTATCTGAACTTGGGATTAGGC 58.070 41.667 0.00 0.00 0.00 3.93
3609 4121 5.548181 AGAGTAACTTCGGAAAGAACCTT 57.452 39.130 0.00 0.00 36.30 3.50
3633 4145 1.878953 ACGAGATCAAGTTGGCGTTT 58.121 45.000 2.34 0.00 0.00 3.60
3667 4179 2.592861 GGCTATCTTGGGCAGCGG 60.593 66.667 0.00 0.00 36.12 5.52
3767 4279 2.174210 ACTAGTACATCGCTGGTCCCTA 59.826 50.000 0.00 0.00 0.00 3.53
3784 4296 7.063544 GCAGTCCTGTACTTGAATTTGTACTAG 59.936 40.741 14.16 0.00 39.57 2.57
3805 4318 5.626955 GTGAATAACAGAAAAGCAAGCAGTC 59.373 40.000 0.00 0.00 0.00 3.51
3815 4328 7.575414 TTACTGCAAGGTGAATAACAGAAAA 57.425 32.000 0.00 0.00 39.30 2.29
3898 4411 3.366781 GGCACTGAAGAAGAATTTGGCTC 60.367 47.826 0.00 0.00 0.00 4.70
3926 4439 5.404366 GCCAATCAATCATGAATGTGTATGC 59.596 40.000 10.52 5.29 39.49 3.14
3944 4457 4.036498 CACTGATGAATCTCTTGGCCAATC 59.964 45.833 20.85 13.92 0.00 2.67
3945 4458 3.952323 CACTGATGAATCTCTTGGCCAAT 59.048 43.478 20.85 2.71 0.00 3.16
3946 4459 3.245016 ACACTGATGAATCTCTTGGCCAA 60.245 43.478 19.25 19.25 0.00 4.52
3947 4460 2.306805 ACACTGATGAATCTCTTGGCCA 59.693 45.455 0.00 0.00 0.00 5.36
3957 4470 4.758674 CCACTTGACAGAACACTGATGAAT 59.241 41.667 0.00 0.00 35.80 2.57
3972 4485 2.559440 GCCTGATGATCTCCACTTGAC 58.441 52.381 0.00 0.00 0.00 3.18
3973 4486 1.487976 GGCCTGATGATCTCCACTTGA 59.512 52.381 0.00 0.00 0.00 3.02
3974 4487 1.211212 TGGCCTGATGATCTCCACTTG 59.789 52.381 3.32 0.00 0.00 3.16
4000 4516 0.319405 AAGCAAACTCAATGGCCTGC 59.681 50.000 3.32 2.11 0.00 4.85
4191 4707 2.350895 CCACGATGAACCCAGCCA 59.649 61.111 0.00 0.00 0.00 4.75
4237 4753 1.134995 CGTGGTCTGAGCAGCTATTGA 60.135 52.381 10.21 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.