Multiple sequence alignment - TraesCS5B01G233300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G233300 chr5B 100.000 3329 0 0 1 3329 411620573 411623901 0.000000e+00 6148.0
1 TraesCS5B01G233300 chr5B 76.239 1271 251 42 1077 2320 486896141 486897387 7.840000e-176 627.0
2 TraesCS5B01G233300 chr5D 94.913 2870 121 15 1 2848 350674913 350677779 0.000000e+00 4468.0
3 TraesCS5B01G233300 chr5D 76.044 1269 257 40 1077 2320 406198247 406199493 1.700000e-172 616.0
4 TraesCS5B01G233300 chr5D 92.105 418 26 4 2846 3261 350677831 350678243 1.720000e-162 582.0
5 TraesCS5B01G233300 chr5D 98.684 76 1 0 3254 3329 350679843 350679918 5.790000e-28 135.0
6 TraesCS5B01G233300 chr5D 85.149 101 13 2 1261 1360 350703974 350704073 5.880000e-18 102.0
7 TraesCS5B01G233300 chr5A 94.181 1581 75 9 910 2473 451137999 451139579 0.000000e+00 2394.0
8 TraesCS5B01G233300 chr5A 85.505 752 51 18 181 877 451137168 451137916 0.000000e+00 732.0
9 TraesCS5B01G233300 chr5A 85.149 101 13 2 1261 1360 451248289 451248388 5.880000e-18 102.0
10 TraesCS5B01G233300 chr5A 85.714 91 10 3 2472 2561 44341090 44341178 3.540000e-15 93.5
11 TraesCS5B01G233300 chr1A 86.154 195 26 1 2895 3088 518805635 518805441 3.370000e-50 209.0
12 TraesCS5B01G233300 chr1B 83.420 193 31 1 2895 3086 571705713 571705521 9.490000e-41 178.0
13 TraesCS5B01G233300 chr1D 77.936 281 42 13 2995 3256 422862780 422862501 1.240000e-34 158.0
14 TraesCS5B01G233300 chr2D 87.500 104 10 3 1258 1360 190369895 190369996 2.100000e-22 117.0
15 TraesCS5B01G233300 chr2D 79.528 127 21 4 2473 2598 388170346 388170224 5.920000e-13 86.1
16 TraesCS5B01G233300 chr2B 85.577 104 12 3 1258 1360 247517936 247518037 4.540000e-19 106.0
17 TraesCS5B01G233300 chr2A 85.577 104 12 3 1258 1360 204930110 204930211 4.540000e-19 106.0
18 TraesCS5B01G233300 chr3B 100.000 30 0 0 2492 2521 74819109 74819080 4.640000e-04 56.5
19 TraesCS5B01G233300 chr6B 100.000 28 0 0 2716 2743 622992651 622992624 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G233300 chr5B 411620573 411623901 3328 False 6148.000000 6148 100.000 1 3329 1 chr5B.!!$F1 3328
1 TraesCS5B01G233300 chr5B 486896141 486897387 1246 False 627.000000 627 76.239 1077 2320 1 chr5B.!!$F2 1243
2 TraesCS5B01G233300 chr5D 350674913 350679918 5005 False 1728.333333 4468 95.234 1 3329 3 chr5D.!!$F3 3328
3 TraesCS5B01G233300 chr5D 406198247 406199493 1246 False 616.000000 616 76.044 1077 2320 1 chr5D.!!$F2 1243
4 TraesCS5B01G233300 chr5A 451137168 451139579 2411 False 1563.000000 2394 89.843 181 2473 2 chr5A.!!$F3 2292

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 648 0.098200 CGTTAGATCGACGCACCTCA 59.902 55.0 10.85 0.00 33.42 3.86 F
905 1005 0.168568 CATACGCATGTGCTTGCACA 59.831 50.0 27.15 27.15 42.91 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1524 0.179134 GCTTCACGTACGAGCTGGAT 60.179 55.0 24.41 0.0 33.72 3.41 R
2607 2740 0.616111 AGGGTGTGGCTAGGTCTCAG 60.616 60.0 0.00 0.0 0.00 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.345607 TTGTGGTGGTGGCGGTCAA 62.346 57.895 0.00 0.00 0.00 3.18
59 60 3.061848 GGTGGTGGCGGTCAATGG 61.062 66.667 0.00 0.00 0.00 3.16
61 62 4.277009 TGGTGGCGGTCAATGGCA 62.277 61.111 0.00 0.00 39.86 4.92
75 76 4.822628 GGCAGCTAGGGTTGGGGC 62.823 72.222 0.00 0.00 0.00 5.80
277 292 6.740110 TGAAACTTTATGCATACGTTTTGGT 58.260 32.000 23.58 10.32 0.00 3.67
281 296 2.911819 ATGCATACGTTTTGGTTCCG 57.088 45.000 0.00 0.00 0.00 4.30
282 297 1.880271 TGCATACGTTTTGGTTCCGA 58.120 45.000 0.00 0.00 0.00 4.55
287 302 1.451067 ACGTTTTGGTTCCGAACACA 58.549 45.000 13.23 6.06 0.00 3.72
299 317 3.577667 TCCGAACACACGTATAACTTGG 58.422 45.455 0.00 0.00 0.00 3.61
301 319 3.365820 CCGAACACACGTATAACTTGGTC 59.634 47.826 0.00 0.00 0.00 4.02
371 410 0.804989 GGCATTGCACGAAGTAAGCT 59.195 50.000 11.39 0.00 41.61 3.74
422 461 2.765807 CTCCAGCATCCGAGGGGT 60.766 66.667 0.00 0.00 33.83 4.95
425 464 1.457643 CCAGCATCCGAGGGGTAGA 60.458 63.158 0.00 0.00 33.83 2.59
521 565 1.078214 TTGCTGGCTCCGATGGAAG 60.078 57.895 0.00 0.00 0.00 3.46
522 566 1.552799 TTGCTGGCTCCGATGGAAGA 61.553 55.000 0.00 0.00 0.00 2.87
570 620 4.845580 ATGGCTCGGGCTTCGCAG 62.846 66.667 7.48 0.00 39.05 5.18
598 648 0.098200 CGTTAGATCGACGCACCTCA 59.902 55.000 10.85 0.00 33.42 3.86
604 654 1.524008 ATCGACGCACCTCACTCACA 61.524 55.000 0.00 0.00 0.00 3.58
608 658 1.448540 CGCACCTCACTCACATCCC 60.449 63.158 0.00 0.00 0.00 3.85
617 667 5.009631 CCTCACTCACATCCCAATTTTGTA 58.990 41.667 0.00 0.00 0.00 2.41
643 693 5.255687 ACACTGATTGAAGTTCCATATGCA 58.744 37.500 0.00 0.00 0.00 3.96
759 810 2.952245 GCAGTCTGCAAGTGCCAG 59.048 61.111 20.16 0.00 46.81 4.85
795 846 3.947612 AATTCTCTGCTCCATGACCAT 57.052 42.857 0.00 0.00 0.00 3.55
828 884 2.165845 TCCCTGCTCTACGTTAGCTTTC 59.834 50.000 19.50 0.00 40.73 2.62
836 892 6.534079 TGCTCTACGTTAGCTTTCTTAATTCC 59.466 38.462 19.50 0.00 40.73 3.01
884 940 0.955178 CCGGATCAGTGTCGAGCTAT 59.045 55.000 0.00 0.00 0.00 2.97
899 999 3.062763 GAGCTATTCATACGCATGTGCT 58.937 45.455 6.08 2.35 39.32 4.40
902 1002 2.480224 ATTCATACGCATGTGCTTGC 57.520 45.000 6.08 0.63 39.32 4.01
904 1004 0.447406 TCATACGCATGTGCTTGCAC 59.553 50.000 17.73 17.73 42.91 4.57
905 1005 0.168568 CATACGCATGTGCTTGCACA 59.831 50.000 27.15 27.15 42.91 4.57
909 1009 2.429571 CATGTGCTTGCACACGGC 60.430 61.111 27.45 2.09 43.74 5.68
921 1029 2.409975 GCACACGGCGGTATATAACAT 58.590 47.619 13.24 0.00 0.00 2.71
922 1030 2.803956 GCACACGGCGGTATATAACATT 59.196 45.455 13.24 0.00 0.00 2.71
923 1031 3.363575 GCACACGGCGGTATATAACATTG 60.364 47.826 13.24 0.00 0.00 2.82
928 1036 4.020928 ACGGCGGTATATAACATTGATCCA 60.021 41.667 13.24 0.00 0.00 3.41
933 1041 7.336931 GGCGGTATATAACATTGATCCAAGAAT 59.663 37.037 0.00 0.00 0.00 2.40
948 1056 4.471025 TCCAAGAATCCTTCATGCTCACTA 59.529 41.667 0.00 0.00 0.00 2.74
963 1071 2.768527 CTCACTACATCCCCATCACAGT 59.231 50.000 0.00 0.00 0.00 3.55
965 1073 2.119495 ACTACATCCCCATCACAGTCC 58.881 52.381 0.00 0.00 0.00 3.85
1016 1124 1.876497 AAAATGGCAAGCATCGCGGT 61.876 50.000 6.13 0.00 0.00 5.68
1051 1159 1.003355 CTTCCGCTGCTCCTTTCCA 60.003 57.895 0.00 0.00 0.00 3.53
1057 1165 3.551496 CTGCTCCTTTCCACGGCCA 62.551 63.158 2.24 0.00 0.00 5.36
1392 1512 2.351276 CAGCCCACGCCCTACTTT 59.649 61.111 0.00 0.00 34.57 2.66
1402 1522 2.652095 CCCTACTTTGACCCGGCGA 61.652 63.158 9.30 0.00 0.00 5.54
1403 1523 1.294138 CCTACTTTGACCCGGCGAA 59.706 57.895 9.30 0.00 0.00 4.70
1404 1524 0.320946 CCTACTTTGACCCGGCGAAA 60.321 55.000 9.30 0.00 0.00 3.46
1418 1538 0.801067 GCGAAATCCAGCTCGTACGT 60.801 55.000 16.05 0.00 37.39 3.57
1563 1686 1.234615 CCTTCACGTTCGGCACCAAT 61.235 55.000 0.00 0.00 0.00 3.16
1761 1884 0.531200 GGCTATACTTCGGCGCCTAT 59.469 55.000 26.68 17.46 37.76 2.57
1785 1908 2.941333 CTCAACAGCACCAGCACG 59.059 61.111 0.00 0.00 45.49 5.34
1827 1950 1.016627 CCACGCCGTTCATCATCAAT 58.983 50.000 0.00 0.00 0.00 2.57
2455 2587 2.192664 TGGCGAGGATTTTAACTGCA 57.807 45.000 0.00 0.00 0.00 4.41
2496 2628 3.436359 GTCTTTCTAAGTCTCGGTCGACT 59.564 47.826 16.46 0.00 45.73 4.18
2531 2663 8.965986 TTAAGTCTCAATCGATGTTATATCCG 57.034 34.615 0.00 0.00 0.00 4.18
2563 2695 8.770438 TTTACATTAAGATTCATGCAAAACCC 57.230 30.769 0.00 0.00 0.00 4.11
2615 2748 6.892456 TCTTGTATGTTATCTCACTGAGACCT 59.108 38.462 11.07 0.00 41.76 3.85
2664 2797 7.390440 ACGAGATTTTGATTGACTTATGGTTCA 59.610 33.333 0.00 0.00 0.00 3.18
2672 2805 2.225491 TGACTTATGGTTCAAGCGTTGC 59.775 45.455 0.00 0.00 0.00 4.17
2725 2858 7.857885 TGTTTTAAAACCAACACAAAAGCTTTG 59.142 29.630 24.55 9.55 38.11 2.77
2732 2865 4.756135 CCAACACAAAAGCTTTGCCATATT 59.244 37.500 13.54 0.38 0.00 1.28
2792 2929 2.667473 AGGTTACCGAAATGACCGAG 57.333 50.000 0.00 0.00 37.26 4.63
2801 2938 3.701604 AATGACCGAGAGCGACCGC 62.702 63.158 6.25 6.25 40.82 5.68
2839 2976 2.171448 ACTCTTGCGGCATAAGGATCTT 59.829 45.455 2.28 0.00 0.00 2.40
2879 3070 6.188407 AGAGAGTACTTGCTATTACACCAGA 58.812 40.000 0.00 0.00 0.00 3.86
2891 3082 2.839486 ACACCAGACATTGACGTCAT 57.161 45.000 20.80 4.07 38.43 3.06
2892 3083 2.416747 ACACCAGACATTGACGTCATG 58.583 47.619 20.80 20.11 38.43 3.07
2915 3107 8.950210 CATGTGTTCCTAAAGACTTGTATTCAT 58.050 33.333 0.00 0.00 32.41 2.57
2946 3138 6.278363 CAAATCTCCCATGAAGCCAAAATAG 58.722 40.000 0.00 0.00 0.00 1.73
2959 3151 3.893813 GCCAAAATAGCCATGGAGAAGAT 59.106 43.478 18.40 0.00 36.27 2.40
2992 3184 5.416013 TCACATTACCATTCGCATTTACCAA 59.584 36.000 0.00 0.00 0.00 3.67
2993 3185 5.743398 CACATTACCATTCGCATTTACCAAG 59.257 40.000 0.00 0.00 0.00 3.61
2994 3186 4.974368 TTACCATTCGCATTTACCAAGG 57.026 40.909 0.00 0.00 0.00 3.61
3035 3227 6.431543 TGACCGAGTTAAAATTGCTCCAATTA 59.568 34.615 3.86 0.00 42.32 1.40
3039 3231 7.416213 CCGAGTTAAAATTGCTCCAATTATCCA 60.416 37.037 3.86 0.00 42.32 3.41
3041 3233 9.305925 GAGTTAAAATTGCTCCAATTATCCAAG 57.694 33.333 3.86 0.00 42.32 3.61
3048 3240 4.098349 TGCTCCAATTATCCAAGTTGATGC 59.902 41.667 3.87 0.00 0.00 3.91
3063 3255 0.179100 GATGCGAGCTAGACCAAGCA 60.179 55.000 0.00 0.00 45.30 3.91
3068 3260 2.476854 GCGAGCTAGACCAAGCAAATTG 60.477 50.000 0.00 0.00 45.30 2.32
3142 3334 8.795786 TGCAAAGTTGACATAAACTACAATTC 57.204 30.769 0.00 0.00 39.48 2.17
3151 3343 2.799126 AACTACAATTCGGCCATCCA 57.201 45.000 2.24 0.00 0.00 3.41
3152 3344 3.297134 AACTACAATTCGGCCATCCAT 57.703 42.857 2.24 0.00 0.00 3.41
3166 3358 2.361119 CCATCCATGATGTTGAAGCCTG 59.639 50.000 0.00 0.00 38.28 4.85
3172 3364 1.079503 GATGTTGAAGCCTGTCCGTC 58.920 55.000 0.00 0.00 0.00 4.79
3178 3370 3.222354 AAGCCTGTCCGTCGTCCAC 62.222 63.158 0.00 0.00 0.00 4.02
3229 3422 0.246360 AAAAATGCTTAGGCGGCACC 59.754 50.000 13.08 0.00 42.69 5.01
3246 3439 4.388485 GGCACCAAAATCTTCCAAATTGT 58.612 39.130 0.00 0.00 0.00 2.71
3318 5118 0.953471 TGCAAGAAACGTAGCCGCAT 60.953 50.000 0.00 0.00 37.70 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.666253 ACAAGCATGCCACCGCCT 62.666 61.111 15.66 0.00 0.00 5.52
37 38 2.978010 GACCGCCACCACCACAAG 60.978 66.667 0.00 0.00 0.00 3.16
56 57 2.693871 CCCCAACCCTAGCTGCCAT 61.694 63.158 0.00 0.00 0.00 4.40
105 106 2.866085 ATCTGACCCTGCGCTTGCTC 62.866 60.000 9.73 0.00 40.12 4.26
277 292 3.989167 CCAAGTTATACGTGTGTTCGGAA 59.011 43.478 0.00 0.00 34.94 4.30
281 296 4.143179 GCAGACCAAGTTATACGTGTGTTC 60.143 45.833 0.00 0.00 0.00 3.18
282 297 3.744426 GCAGACCAAGTTATACGTGTGTT 59.256 43.478 0.00 0.00 0.00 3.32
287 302 3.323243 GTGTGCAGACCAAGTTATACGT 58.677 45.455 1.72 0.00 0.00 3.57
299 317 2.715532 TTCGCCAGAGGTGTGCAGAC 62.716 60.000 5.20 5.20 34.40 3.51
301 319 0.957395 AATTCGCCAGAGGTGTGCAG 60.957 55.000 0.00 0.00 34.40 4.41
371 410 2.027073 CACGGCAGCTCGCAACTTA 61.027 57.895 9.78 0.00 45.17 2.24
422 461 3.687212 TCTGCGCGGATTTTGATTTTCTA 59.313 39.130 16.69 0.00 0.00 2.10
425 464 3.296322 TTCTGCGCGGATTTTGATTTT 57.704 38.095 21.71 0.00 0.00 1.82
570 620 1.603326 GTCGATCTAACGGAGAGGGTC 59.397 57.143 0.00 0.00 37.70 4.46
598 648 6.430000 GTGTAGTACAAAATTGGGATGTGAGT 59.570 38.462 4.11 0.00 0.00 3.41
604 654 7.888021 TCAATCAGTGTAGTACAAAATTGGGAT 59.112 33.333 21.52 10.04 30.73 3.85
608 658 9.950680 AACTTCAATCAGTGTAGTACAAAATTG 57.049 29.630 18.56 18.56 36.90 2.32
617 667 6.540189 GCATATGGAACTTCAATCAGTGTAGT 59.460 38.462 4.56 0.00 39.36 2.73
643 693 3.437395 GGTATAGAGATCTGCGATCGTGT 59.563 47.826 17.81 0.00 0.00 4.49
723 773 3.761445 AATGATGCATGCACCGCGC 62.761 57.895 25.37 10.70 42.89 6.86
759 810 4.002982 GAGAATTTTGGGCATGGAAAACC 58.997 43.478 0.00 0.00 0.00 3.27
795 846 3.094386 GCAGGGAATTGCGGTGATA 57.906 52.632 2.60 0.00 33.90 2.15
828 884 1.410153 GGCATGGTGCTGGGAATTAAG 59.590 52.381 1.64 0.00 44.28 1.85
836 892 2.753043 GTCTGGGCATGGTGCTGG 60.753 66.667 1.64 0.00 44.28 4.85
899 999 2.203401 GTTATATACCGCCGTGTGCAA 58.797 47.619 0.00 0.00 41.33 4.08
902 1002 4.052608 TCAATGTTATATACCGCCGTGTG 58.947 43.478 0.00 0.00 0.00 3.82
904 1004 4.328983 GGATCAATGTTATATACCGCCGTG 59.671 45.833 0.00 0.00 0.00 4.94
905 1005 4.020928 TGGATCAATGTTATATACCGCCGT 60.021 41.667 0.00 0.00 0.00 5.68
909 1009 8.883731 GGATTCTTGGATCAATGTTATATACCG 58.116 37.037 0.00 0.00 0.00 4.02
921 1029 4.863548 AGCATGAAGGATTCTTGGATCAA 58.136 39.130 0.00 0.00 46.70 2.57
922 1030 4.080186 TGAGCATGAAGGATTCTTGGATCA 60.080 41.667 0.00 0.00 46.70 2.92
923 1031 4.275443 GTGAGCATGAAGGATTCTTGGATC 59.725 45.833 0.00 0.00 46.70 3.36
933 1041 2.435805 GGGATGTAGTGAGCATGAAGGA 59.564 50.000 0.00 0.00 0.00 3.36
940 1048 1.486310 GTGATGGGGATGTAGTGAGCA 59.514 52.381 0.00 0.00 0.00 4.26
948 1056 2.402564 CTAGGACTGTGATGGGGATGT 58.597 52.381 0.00 0.00 0.00 3.06
991 1099 0.978151 ATGCTTGCCATTTTGGAGCA 59.022 45.000 11.07 11.07 46.86 4.26
1016 1124 4.704833 GCAGGCCGAGCAAGACCA 62.705 66.667 16.97 0.00 0.00 4.02
1392 1512 2.267642 CTGGATTTCGCCGGGTCA 59.732 61.111 2.18 0.00 0.00 4.02
1402 1522 2.607187 CTTCACGTACGAGCTGGATTT 58.393 47.619 24.41 0.00 0.00 2.17
1403 1523 1.736032 GCTTCACGTACGAGCTGGATT 60.736 52.381 24.41 0.00 33.72 3.01
1404 1524 0.179134 GCTTCACGTACGAGCTGGAT 60.179 55.000 24.41 0.00 33.72 3.41
1418 1538 1.290324 GACGAGCAGGACAGCTTCA 59.710 57.895 0.00 0.00 46.75 3.02
1599 1722 2.746277 GCGTTGAGGTTCCCGCAT 60.746 61.111 0.00 0.00 45.12 4.73
1746 1869 1.004918 GGCATAGGCGCCGAAGTAT 60.005 57.895 23.20 10.70 43.52 2.12
1894 2017 2.264794 GAACACCCACGGCTCGAT 59.735 61.111 1.50 0.00 0.00 3.59
2607 2740 0.616111 AGGGTGTGGCTAGGTCTCAG 60.616 60.000 0.00 0.00 0.00 3.35
2615 2748 4.303794 AGGATACAAATAGGGTGTGGCTA 58.696 43.478 0.00 0.00 41.41 3.93
2807 2944 1.139058 CCGCAAGAGTAGGCTTATGGT 59.861 52.381 0.00 0.00 43.02 3.55
2819 2956 2.540265 AGATCCTTATGCCGCAAGAG 57.460 50.000 0.00 0.00 43.02 2.85
2839 2976 7.514721 AGTACTCTCTTTGTCCCAAACATTTA 58.485 34.615 0.00 0.00 37.82 1.40
2854 3045 6.663953 TCTGGTGTAATAGCAAGTACTCTCTT 59.336 38.462 0.00 0.00 36.15 2.85
2861 3052 6.816640 GTCAATGTCTGGTGTAATAGCAAGTA 59.183 38.462 0.00 0.00 36.15 2.24
2879 3070 3.126001 AGGAACACATGACGTCAATGT 57.874 42.857 25.23 25.23 32.66 2.71
2891 3082 8.918202 AATGAATACAAGTCTTTAGGAACACA 57.082 30.769 0.00 0.00 0.00 3.72
2892 3083 8.999431 TGAATGAATACAAGTCTTTAGGAACAC 58.001 33.333 0.00 0.00 0.00 3.32
2915 3107 4.403432 GCTTCATGGGAGATTTGGAATGAA 59.597 41.667 0.00 0.00 34.04 2.57
2946 3138 3.137360 AGGAAAGGTATCTTCTCCATGGC 59.863 47.826 6.96 0.00 31.82 4.40
2959 3151 5.424757 CGAATGGTAATGTGAGGAAAGGTA 58.575 41.667 0.00 0.00 0.00 3.08
2992 3184 3.009143 GGTCAAAGATTGGTGGTACTCCT 59.991 47.826 8.56 0.00 43.38 3.69
2993 3185 3.344515 GGTCAAAGATTGGTGGTACTCC 58.655 50.000 0.00 0.00 43.26 3.85
2994 3186 3.000727 CGGTCAAAGATTGGTGGTACTC 58.999 50.000 0.00 0.00 0.00 2.59
3035 3227 2.432146 TCTAGCTCGCATCAACTTGGAT 59.568 45.455 0.00 0.00 0.00 3.41
3039 3231 1.550524 TGGTCTAGCTCGCATCAACTT 59.449 47.619 0.00 0.00 0.00 2.66
3041 3233 1.929836 CTTGGTCTAGCTCGCATCAAC 59.070 52.381 0.00 0.00 0.00 3.18
3048 3240 2.744202 ACAATTTGCTTGGTCTAGCTCG 59.256 45.455 0.00 0.00 41.76 5.03
3072 3264 4.894784 TCACCTAGAATTTGGTCTGACAC 58.105 43.478 10.38 0.00 33.75 3.67
3074 3266 3.935828 GCTCACCTAGAATTTGGTCTGAC 59.064 47.826 0.00 0.00 33.75 3.51
3111 3303 6.326375 AGTTTATGTCAACTTTGCAAACGAA 58.674 32.000 8.05 0.00 32.81 3.85
3115 3307 9.593134 AATTGTAGTTTATGTCAACTTTGCAAA 57.407 25.926 12.14 12.14 38.07 3.68
3142 3334 1.335810 CTTCAACATCATGGATGGCCG 59.664 52.381 10.64 0.00 43.60 6.13
3151 3343 1.003580 ACGGACAGGCTTCAACATCAT 59.996 47.619 0.00 0.00 0.00 2.45
3152 3344 0.396435 ACGGACAGGCTTCAACATCA 59.604 50.000 0.00 0.00 0.00 3.07
3166 3358 1.919956 ATCGAGTGTGGACGACGGAC 61.920 60.000 0.00 0.00 41.17 4.79
3172 3364 0.526211 TCCAAGATCGAGTGTGGACG 59.474 55.000 9.12 0.00 35.22 4.79
3213 3405 0.897863 TTTGGTGCCGCCTAAGCATT 60.898 50.000 0.00 0.00 43.29 3.56
3229 3422 4.559153 AGCCGACAATTTGGAAGATTTTG 58.441 39.130 0.78 0.00 0.00 2.44
3246 3439 5.503662 TGTCGTCACTAAATATAAGCCGA 57.496 39.130 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.