Multiple sequence alignment - TraesCS5B01G232500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G232500 chr5B 100.000 2919 0 0 1 2919 410582981 410585899 0.000000e+00 5391.0
1 TraesCS5B01G232500 chr5A 92.666 1159 53 12 584 1725 450470756 450471899 0.000000e+00 1640.0
2 TraesCS5B01G232500 chr5A 91.988 337 26 1 1883 2218 450471956 450472292 3.400000e-129 472.0
3 TraesCS5B01G232500 chr5D 93.705 969 42 14 496 1446 349933652 349934619 0.000000e+00 1434.0
4 TraesCS5B01G232500 chr5D 92.011 363 23 2 1862 2218 349934928 349935290 3.360000e-139 505.0
5 TraesCS5B01G232500 chr5D 86.997 323 20 10 1499 1808 349934630 349934943 7.740000e-91 344.0
6 TraesCS5B01G232500 chr5D 91.096 146 11 1 2650 2793 349935546 349935691 2.290000e-46 196.0
7 TraesCS5B01G232500 chr5D 90.435 115 11 0 38 152 349932951 349933065 5.040000e-33 152.0
8 TraesCS5B01G232500 chr5D 85.714 147 16 1 2077 2218 331116071 331115925 1.810000e-32 150.0
9 TraesCS5B01G232500 chr5D 86.170 94 13 0 2319 2412 325659061 325658968 5.150000e-18 102.0
10 TraesCS5B01G232500 chr5D 86.957 92 4 2 2570 2653 331115830 331115739 2.390000e-16 97.1
11 TraesCS5B01G232500 chr5D 90.196 51 4 1 1809 1859 250585002 250585051 6.750000e-07 65.8
12 TraesCS5B01G232500 chr4A 89.247 93 10 0 2313 2405 731471311 731471403 1.840000e-22 117.0
13 TraesCS5B01G232500 chr4A 100.000 34 0 0 2094 2127 675683862 675683895 2.430000e-06 63.9
14 TraesCS5B01G232500 chr4B 89.412 85 9 0 2319 2403 216796345 216796429 1.110000e-19 108.0
15 TraesCS5B01G232500 chr4B 93.243 74 4 1 2324 2397 604888782 604888710 1.110000e-19 108.0
16 TraesCS5B01G232500 chr6D 88.235 85 10 0 2319 2403 381140087 381140003 5.150000e-18 102.0
17 TraesCS5B01G232500 chr3D 87.500 88 10 1 2319 2406 584711127 584711041 1.850000e-17 100.0
18 TraesCS5B01G232500 chr3D 87.059 85 11 0 2319 2403 125095398 125095482 2.390000e-16 97.1
19 TraesCS5B01G232500 chr7B 87.059 85 10 1 2319 2403 442134797 442134714 8.610000e-16 95.3
20 TraesCS5B01G232500 chr7B 88.333 60 5 2 1811 1870 709852594 709852537 1.450000e-08 71.3
21 TraesCS5B01G232500 chr7B 100.000 34 0 0 2094 2127 6549333 6549300 2.430000e-06 63.9
22 TraesCS5B01G232500 chr2B 86.517 89 8 3 2319 2403 530369812 530369900 8.610000e-16 95.3
23 TraesCS5B01G232500 chr2B 92.308 52 3 1 1808 1859 5470937 5470987 4.040000e-09 73.1
24 TraesCS5B01G232500 chr2D 96.154 52 2 0 1809 1860 15187803 15187752 5.180000e-13 86.1
25 TraesCS5B01G232500 chr2A 94.231 52 3 0 1809 1860 17245314 17245263 2.410000e-11 80.5
26 TraesCS5B01G232500 chr2A 94.118 51 2 1 1810 1860 447370688 447370639 3.120000e-10 76.8
27 TraesCS5B01G232500 chr2A 92.453 53 4 0 1811 1863 750382516 750382568 3.120000e-10 76.8
28 TraesCS5B01G232500 chr1A 92.308 52 3 1 1810 1860 518772159 518772210 4.040000e-09 73.1
29 TraesCS5B01G232500 chr3A 89.474 57 4 2 1808 1863 697065364 697065309 1.450000e-08 71.3
30 TraesCS5B01G232500 chr3A 100.000 35 0 0 2093 2127 36311067 36311033 6.750000e-07 65.8
31 TraesCS5B01G232500 chr6B 100.000 34 0 0 2094 2127 472357955 472357922 2.430000e-06 63.9
32 TraesCS5B01G232500 chr6B 100.000 34 0 0 2094 2127 646686348 646686381 2.430000e-06 63.9
33 TraesCS5B01G232500 chr1B 100.000 34 0 0 2094 2127 655665409 655665376 2.430000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G232500 chr5B 410582981 410585899 2918 False 5391.0 5391 100.0000 1 2919 1 chr5B.!!$F1 2918
1 TraesCS5B01G232500 chr5A 450470756 450472292 1536 False 1056.0 1640 92.3270 584 2218 2 chr5A.!!$F1 1634
2 TraesCS5B01G232500 chr5D 349932951 349935691 2740 False 526.2 1434 90.8488 38 2793 5 chr5D.!!$F2 2755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
862 1130 0.179234 TTGAACTCCACGTCCAAGCA 59.821 50.0 0.0 0.0 0.00 3.91 F
888 1156 0.554792 CCAATGCCATCCCCTTCTCT 59.445 55.0 0.0 0.0 0.00 3.10 F
1725 2021 0.242825 CTCGCACGTCCTGAAGGTAA 59.757 55.0 0.0 0.0 36.34 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 2002 0.242825 TTACCTTCAGGACGTGCGAG 59.757 55.0 0.00 1.29 38.94 5.03 R
1738 2034 0.249405 ACGGAGAAAAACACGGCGTA 60.249 50.0 14.22 0.00 0.00 4.42 R
2890 3351 0.238289 GTGTGGACATGCAACTTCCG 59.762 55.0 0.00 0.00 31.38 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.438676 AACACAATTATATGAGTTGAGCCTAC 57.561 34.615 4.28 0.00 33.70 3.18
27 28 6.992715 ACACAATTATATGAGTTGAGCCTACC 59.007 38.462 4.28 0.00 0.00 3.18
28 29 6.146184 CACAATTATATGAGTTGAGCCTACCG 59.854 42.308 4.28 0.00 0.00 4.02
29 30 4.866508 TTATATGAGTTGAGCCTACCGG 57.133 45.455 0.00 0.00 0.00 5.28
30 31 1.410004 TATGAGTTGAGCCTACCGGG 58.590 55.000 6.32 0.00 38.36 5.73
31 32 0.325296 ATGAGTTGAGCCTACCGGGA 60.325 55.000 6.32 0.00 37.23 5.14
32 33 1.255667 TGAGTTGAGCCTACCGGGAC 61.256 60.000 6.32 0.00 37.23 4.46
33 34 1.229082 AGTTGAGCCTACCGGGACA 60.229 57.895 6.32 0.00 37.23 4.02
34 35 0.617820 AGTTGAGCCTACCGGGACAT 60.618 55.000 6.32 0.00 37.23 3.06
35 36 0.462047 GTTGAGCCTACCGGGACATG 60.462 60.000 6.32 0.00 37.23 3.21
36 37 2.109181 GAGCCTACCGGGACATGC 59.891 66.667 6.32 0.00 37.23 4.06
47 48 1.133792 CGGGACATGCCTAGGGAAATT 60.134 52.381 7.22 0.00 36.66 1.82
48 49 2.686715 CGGGACATGCCTAGGGAAATTT 60.687 50.000 7.22 0.00 36.66 1.82
57 58 7.181845 ACATGCCTAGGGAAATTTAAAATCCAA 59.818 33.333 7.22 9.91 34.82 3.53
87 88 2.355209 GGCTCTCCTAGTCCACAAAAGG 60.355 54.545 0.00 0.00 0.00 3.11
94 95 1.692411 AGTCCACAAAAGGTCTTGGC 58.308 50.000 0.00 0.00 0.00 4.52
97 98 1.202879 TCCACAAAAGGTCTTGGCGAT 60.203 47.619 0.00 0.00 0.00 4.58
140 141 9.787532 CATTTATTGTCAAATCCTATTTCGTGT 57.212 29.630 0.00 0.00 0.00 4.49
142 143 5.873179 TTGTCAAATCCTATTTCGTGTCC 57.127 39.130 0.00 0.00 0.00 4.02
152 153 0.865111 TTTCGTGTCCGATGCACAAG 59.135 50.000 0.00 0.00 43.80 3.16
153 154 0.249699 TTCGTGTCCGATGCACAAGT 60.250 50.000 0.00 0.00 43.80 3.16
154 155 0.943835 TCGTGTCCGATGCACAAGTG 60.944 55.000 0.00 0.00 38.40 3.16
155 156 1.221466 CGTGTCCGATGCACAAGTGT 61.221 55.000 1.79 0.00 36.71 3.55
156 157 0.944386 GTGTCCGATGCACAAGTGTT 59.056 50.000 1.79 0.00 36.88 3.32
157 158 2.139917 GTGTCCGATGCACAAGTGTTA 58.860 47.619 1.79 0.00 36.88 2.41
158 159 2.157668 GTGTCCGATGCACAAGTGTTAG 59.842 50.000 1.79 0.00 36.88 2.34
159 160 1.732259 GTCCGATGCACAAGTGTTAGG 59.268 52.381 1.79 1.00 0.00 2.69
160 161 0.447801 CCGATGCACAAGTGTTAGGC 59.552 55.000 1.79 0.00 0.00 3.93
161 162 0.447801 CGATGCACAAGTGTTAGGCC 59.552 55.000 0.00 0.00 0.00 5.19
162 163 0.811281 GATGCACAAGTGTTAGGCCC 59.189 55.000 0.00 0.00 0.00 5.80
163 164 0.960364 ATGCACAAGTGTTAGGCCCG 60.960 55.000 0.00 0.00 0.00 6.13
164 165 1.599797 GCACAAGTGTTAGGCCCGT 60.600 57.895 0.00 0.00 0.00 5.28
165 166 1.852067 GCACAAGTGTTAGGCCCGTG 61.852 60.000 0.00 0.00 0.00 4.94
166 167 1.072505 ACAAGTGTTAGGCCCGTGG 59.927 57.895 0.00 0.00 0.00 4.94
167 168 1.674322 CAAGTGTTAGGCCCGTGGG 60.674 63.158 0.00 0.00 38.57 4.61
183 184 4.687464 GGGGGTACACGTGTCTTG 57.313 61.111 27.16 0.00 0.00 3.02
184 185 1.004200 GGGGGTACACGTGTCTTGG 60.004 63.158 27.16 0.00 0.00 3.61
185 186 1.004200 GGGGTACACGTGTCTTGGG 60.004 63.158 27.16 0.00 0.00 4.12
186 187 1.750297 GGGTACACGTGTCTTGGGT 59.250 57.895 27.16 0.24 0.00 4.51
187 188 0.320160 GGGTACACGTGTCTTGGGTC 60.320 60.000 27.16 7.74 0.00 4.46
188 189 0.677842 GGTACACGTGTCTTGGGTCT 59.322 55.000 27.16 0.00 0.00 3.85
189 190 1.069668 GGTACACGTGTCTTGGGTCTT 59.930 52.381 27.16 0.00 0.00 3.01
190 191 2.297033 GGTACACGTGTCTTGGGTCTTA 59.703 50.000 27.16 0.00 0.00 2.10
191 192 2.814280 ACACGTGTCTTGGGTCTTAG 57.186 50.000 17.22 0.00 0.00 2.18
192 193 1.343465 ACACGTGTCTTGGGTCTTAGG 59.657 52.381 17.22 0.00 0.00 2.69
193 194 0.320697 ACGTGTCTTGGGTCTTAGGC 59.679 55.000 0.00 0.00 0.00 3.93
194 195 0.320374 CGTGTCTTGGGTCTTAGGCA 59.680 55.000 0.00 0.00 0.00 4.75
195 196 1.066143 CGTGTCTTGGGTCTTAGGCAT 60.066 52.381 0.00 0.00 0.00 4.40
196 197 2.615493 CGTGTCTTGGGTCTTAGGCATT 60.615 50.000 0.00 0.00 0.00 3.56
197 198 3.010420 GTGTCTTGGGTCTTAGGCATTC 58.990 50.000 0.00 0.00 0.00 2.67
198 199 2.026262 TGTCTTGGGTCTTAGGCATTCC 60.026 50.000 0.00 0.00 0.00 3.01
199 200 2.239907 GTCTTGGGTCTTAGGCATTCCT 59.760 50.000 0.00 0.00 46.57 3.36
200 201 2.239654 TCTTGGGTCTTAGGCATTCCTG 59.760 50.000 0.00 0.00 44.08 3.86
201 202 0.918983 TGGGTCTTAGGCATTCCTGG 59.081 55.000 0.00 0.00 44.08 4.45
202 203 0.919710 GGGTCTTAGGCATTCCTGGT 59.080 55.000 0.00 0.00 44.08 4.00
203 204 1.285078 GGGTCTTAGGCATTCCTGGTT 59.715 52.381 0.00 0.00 44.08 3.67
204 205 2.291605 GGGTCTTAGGCATTCCTGGTTT 60.292 50.000 0.00 0.00 44.08 3.27
205 206 3.431415 GGTCTTAGGCATTCCTGGTTTT 58.569 45.455 0.00 0.00 44.08 2.43
206 207 4.569015 GGGTCTTAGGCATTCCTGGTTTTA 60.569 45.833 0.00 0.00 44.08 1.52
207 208 4.640647 GGTCTTAGGCATTCCTGGTTTTAG 59.359 45.833 0.00 0.00 44.08 1.85
208 209 5.254115 GTCTTAGGCATTCCTGGTTTTAGT 58.746 41.667 0.00 0.00 44.08 2.24
209 210 5.354513 GTCTTAGGCATTCCTGGTTTTAGTC 59.645 44.000 0.00 0.00 44.08 2.59
210 211 3.806949 AGGCATTCCTGGTTTTAGTCA 57.193 42.857 0.00 0.00 42.34 3.41
211 212 3.690460 AGGCATTCCTGGTTTTAGTCAG 58.310 45.455 0.00 0.00 42.34 3.51
212 213 3.074538 AGGCATTCCTGGTTTTAGTCAGT 59.925 43.478 0.00 0.00 42.34 3.41
213 214 3.826729 GGCATTCCTGGTTTTAGTCAGTT 59.173 43.478 0.00 0.00 0.00 3.16
214 215 4.280929 GGCATTCCTGGTTTTAGTCAGTTT 59.719 41.667 0.00 0.00 0.00 2.66
215 216 5.221441 GGCATTCCTGGTTTTAGTCAGTTTT 60.221 40.000 0.00 0.00 0.00 2.43
216 217 5.920840 GCATTCCTGGTTTTAGTCAGTTTTC 59.079 40.000 0.00 0.00 0.00 2.29
217 218 6.239036 GCATTCCTGGTTTTAGTCAGTTTTCT 60.239 38.462 0.00 0.00 0.00 2.52
218 219 7.684428 GCATTCCTGGTTTTAGTCAGTTTTCTT 60.684 37.037 0.00 0.00 0.00 2.52
219 220 6.937436 TCCTGGTTTTAGTCAGTTTTCTTC 57.063 37.500 0.00 0.00 0.00 2.87
220 221 6.659824 TCCTGGTTTTAGTCAGTTTTCTTCT 58.340 36.000 0.00 0.00 0.00 2.85
221 222 7.116736 TCCTGGTTTTAGTCAGTTTTCTTCTT 58.883 34.615 0.00 0.00 0.00 2.52
222 223 8.269317 TCCTGGTTTTAGTCAGTTTTCTTCTTA 58.731 33.333 0.00 0.00 0.00 2.10
280 438 8.310406 ACTTGTTCAGTTTTTCTTCCTTTTTG 57.690 30.769 0.00 0.00 27.32 2.44
282 440 7.650834 TGTTCAGTTTTTCTTCCTTTTTGTG 57.349 32.000 0.00 0.00 0.00 3.33
284 442 7.713073 TGTTCAGTTTTTCTTCCTTTTTGTGTT 59.287 29.630 0.00 0.00 0.00 3.32
443 604 8.436046 TTGGTACACGGGTATACAATTTTATC 57.564 34.615 12.22 0.00 39.29 1.75
447 608 9.748708 GTACACGGGTATACAATTTTATCTACA 57.251 33.333 0.00 0.00 0.00 2.74
492 747 7.334749 GCAATGAAAGTTTTCCGAAGTAAAAC 58.665 34.615 0.00 0.00 44.85 2.43
493 748 7.009723 GCAATGAAAGTTTTCCGAAGTAAAACA 59.990 33.333 12.41 0.00 46.50 2.83
494 749 8.865001 CAATGAAAGTTTTCCGAAGTAAAACAA 58.135 29.630 12.41 0.00 46.50 2.83
495 750 8.989653 ATGAAAGTTTTCCGAAGTAAAACAAA 57.010 26.923 12.41 0.00 46.50 2.83
496 751 8.813643 TGAAAGTTTTCCGAAGTAAAACAAAA 57.186 26.923 12.41 0.00 46.50 2.44
497 752 9.257651 TGAAAGTTTTCCGAAGTAAAACAAAAA 57.742 25.926 12.41 0.00 46.50 1.94
537 792 2.123854 CTGCATCATGGCTGGCCT 60.124 61.111 13.05 0.00 36.94 5.19
556 811 3.326747 CCTATATAAGGTGTTCAGGCGC 58.673 50.000 0.00 0.00 40.94 6.53
564 819 2.815647 GTTCAGGCGCTTCCTCGG 60.816 66.667 7.64 0.00 45.52 4.63
596 851 3.311110 AAGCGCGGAACAGGAGGA 61.311 61.111 8.83 0.00 0.00 3.71
632 887 6.764877 TTTCGTTTCATCACTGTTCTACTC 57.235 37.500 0.00 0.00 0.00 2.59
634 889 4.523173 TCGTTTCATCACTGTTCTACTCCT 59.477 41.667 0.00 0.00 0.00 3.69
647 910 6.698380 TGTTCTACTCCTGTTACATTTCTCC 58.302 40.000 0.00 0.00 0.00 3.71
654 917 2.755103 CTGTTACATTTCTCCCCCTTGC 59.245 50.000 0.00 0.00 0.00 4.01
684 947 3.855689 ATTCTTGGTTCATTTCGCAGG 57.144 42.857 0.00 0.00 0.00 4.85
757 1025 4.864334 GGCGTGCTCCCTCCCATG 62.864 72.222 0.00 0.00 0.00 3.66
862 1130 0.179234 TTGAACTCCACGTCCAAGCA 59.821 50.000 0.00 0.00 0.00 3.91
871 1139 2.203480 GTCCAAGCAAGGCACCCA 60.203 61.111 0.00 0.00 0.00 4.51
886 1154 1.224003 ACCCAATGCCATCCCCTTCT 61.224 55.000 0.00 0.00 0.00 2.85
888 1156 0.554792 CCAATGCCATCCCCTTCTCT 59.445 55.000 0.00 0.00 0.00 3.10
893 1161 2.238530 CCATCCCCTTCTCTGGCAT 58.761 57.895 0.00 0.00 0.00 4.40
991 1263 1.906824 TCGCGGTGAGTTCCTTCCT 60.907 57.895 6.13 0.00 0.00 3.36
1056 1328 2.749839 GCCATTGCAGGGTACGCA 60.750 61.111 12.95 0.88 37.68 5.24
1188 1465 1.068588 TGATATACCCGCTGTGAGTGC 59.931 52.381 0.00 0.00 0.00 4.40
1198 1475 0.952497 CTGTGAGTGCGCATTCCTGT 60.952 55.000 27.38 2.89 33.39 4.00
1296 1577 2.604139 TCTGTGGGTGTATGTGTGAGA 58.396 47.619 0.00 0.00 0.00 3.27
1433 1717 0.749649 CAGCCGAGCAAGTCCTCTAT 59.250 55.000 0.00 0.00 0.00 1.98
1448 1732 9.838339 CAAGTCCTCTATTGGTAAAATCATAGT 57.162 33.333 0.00 0.00 0.00 2.12
1451 1735 8.429641 GTCCTCTATTGGTAAAATCATAGTGGA 58.570 37.037 5.21 5.21 34.12 4.02
1530 1814 1.999735 TCCGCGTGCAGAAAAGATAAG 59.000 47.619 4.92 0.00 0.00 1.73
1535 1819 3.186409 GCGTGCAGAAAAGATAAGTGTGA 59.814 43.478 0.00 0.00 0.00 3.58
1725 2021 0.242825 CTCGCACGTCCTGAAGGTAA 59.757 55.000 0.00 0.00 36.34 2.85
1727 2023 2.093890 TCGCACGTCCTGAAGGTAATA 58.906 47.619 0.00 0.00 36.34 0.98
1729 2025 3.131577 TCGCACGTCCTGAAGGTAATAAT 59.868 43.478 0.00 0.00 36.34 1.28
1730 2026 3.245284 CGCACGTCCTGAAGGTAATAATG 59.755 47.826 0.00 0.00 36.34 1.90
1731 2027 4.439057 GCACGTCCTGAAGGTAATAATGA 58.561 43.478 0.00 0.00 36.34 2.57
1732 2028 4.873827 GCACGTCCTGAAGGTAATAATGAA 59.126 41.667 0.00 0.00 36.34 2.57
1733 2029 5.006746 GCACGTCCTGAAGGTAATAATGAAG 59.993 44.000 0.00 0.00 36.34 3.02
1734 2030 6.106673 CACGTCCTGAAGGTAATAATGAAGT 58.893 40.000 0.00 0.00 36.34 3.01
1735 2031 6.594159 CACGTCCTGAAGGTAATAATGAAGTT 59.406 38.462 0.00 0.00 36.34 2.66
1737 2033 7.042335 CGTCCTGAAGGTAATAATGAAGTTCT 58.958 38.462 4.17 0.00 36.34 3.01
1738 2034 7.549488 CGTCCTGAAGGTAATAATGAAGTTCTT 59.451 37.037 4.17 0.00 36.34 2.52
1739 2035 9.886132 GTCCTGAAGGTAATAATGAAGTTCTTA 57.114 33.333 4.17 1.41 36.34 2.10
1740 2036 9.886132 TCCTGAAGGTAATAATGAAGTTCTTAC 57.114 33.333 4.17 4.56 36.34 2.34
1741 2037 8.818057 CCTGAAGGTAATAATGAAGTTCTTACG 58.182 37.037 4.17 0.00 32.86 3.18
1742 2038 8.193250 TGAAGGTAATAATGAAGTTCTTACGC 57.807 34.615 4.17 0.39 32.86 4.42
1743 2039 7.279313 TGAAGGTAATAATGAAGTTCTTACGCC 59.721 37.037 4.17 4.62 32.86 5.68
1744 2040 5.751990 AGGTAATAATGAAGTTCTTACGCCG 59.248 40.000 4.17 0.00 32.86 6.46
1745 2041 5.521372 GGTAATAATGAAGTTCTTACGCCGT 59.479 40.000 4.17 0.00 32.86 5.68
1748 2044 2.228138 TGAAGTTCTTACGCCGTGTT 57.772 45.000 0.00 0.00 0.00 3.32
1755 2051 2.137523 TCTTACGCCGTGTTTTTCTCC 58.862 47.619 0.00 0.00 0.00 3.71
1758 2054 1.083015 CGCCGTGTTTTTCTCCGTG 60.083 57.895 0.00 0.00 0.00 4.94
1781 2078 3.070748 TCTTTTCGAAATGCATGGTCGA 58.929 40.909 24.33 24.33 41.72 4.20
1810 2107 2.716988 GCATCTTGCGTTGCTTCAC 58.283 52.632 0.00 0.00 35.95 3.18
1811 2108 0.239347 GCATCTTGCGTTGCTTCACT 59.761 50.000 0.00 0.00 35.95 3.41
1812 2109 1.335324 GCATCTTGCGTTGCTTCACTT 60.335 47.619 0.00 0.00 35.95 3.16
1813 2110 2.313234 CATCTTGCGTTGCTTCACTTG 58.687 47.619 0.00 0.00 0.00 3.16
1814 2111 1.662517 TCTTGCGTTGCTTCACTTGA 58.337 45.000 0.00 0.00 0.00 3.02
1815 2112 2.221169 TCTTGCGTTGCTTCACTTGAT 58.779 42.857 0.00 0.00 0.00 2.57
1816 2113 2.031769 TCTTGCGTTGCTTCACTTGATG 60.032 45.455 0.00 0.00 0.00 3.07
1817 2114 0.040157 TGCGTTGCTTCACTTGATGC 60.040 50.000 9.58 9.58 43.15 3.91
1818 2115 0.239347 GCGTTGCTTCACTTGATGCT 59.761 50.000 15.72 0.00 43.23 3.79
1819 2116 1.335324 GCGTTGCTTCACTTGATGCTT 60.335 47.619 15.72 0.00 43.23 3.91
1820 2117 2.578495 CGTTGCTTCACTTGATGCTTC 58.422 47.619 15.72 9.16 43.23 3.86
1821 2118 2.031769 CGTTGCTTCACTTGATGCTTCA 60.032 45.455 15.72 0.00 43.23 3.02
1822 2119 3.365666 CGTTGCTTCACTTGATGCTTCAT 60.366 43.478 15.72 0.00 43.23 2.57
1823 2120 4.553323 GTTGCTTCACTTGATGCTTCATT 58.447 39.130 15.72 0.00 43.23 2.57
1824 2121 4.859304 TGCTTCACTTGATGCTTCATTT 57.141 36.364 15.72 0.00 43.23 2.32
1825 2122 5.204409 TGCTTCACTTGATGCTTCATTTT 57.796 34.783 15.72 0.00 43.23 1.82
1826 2123 4.986034 TGCTTCACTTGATGCTTCATTTTG 59.014 37.500 15.72 1.89 43.23 2.44
1827 2124 5.221283 TGCTTCACTTGATGCTTCATTTTGA 60.221 36.000 15.72 4.09 43.23 2.69
1828 2125 5.345202 GCTTCACTTGATGCTTCATTTTGAG 59.655 40.000 2.75 0.28 40.69 3.02
1829 2126 6.395426 TTCACTTGATGCTTCATTTTGAGT 57.605 33.333 2.75 0.90 0.00 3.41
1830 2127 6.005583 TCACTTGATGCTTCATTTTGAGTC 57.994 37.500 2.75 0.00 0.00 3.36
1831 2128 5.532032 TCACTTGATGCTTCATTTTGAGTCA 59.468 36.000 2.75 0.00 0.00 3.41
1832 2129 6.039605 TCACTTGATGCTTCATTTTGAGTCAA 59.960 34.615 0.08 0.08 0.00 3.18
1833 2130 6.866770 CACTTGATGCTTCATTTTGAGTCAAT 59.133 34.615 6.36 0.00 0.00 2.57
1834 2131 8.024865 CACTTGATGCTTCATTTTGAGTCAATA 58.975 33.333 6.36 1.98 0.00 1.90
1835 2132 8.579006 ACTTGATGCTTCATTTTGAGTCAATAA 58.421 29.630 6.36 4.84 0.00 1.40
1836 2133 9.414295 CTTGATGCTTCATTTTGAGTCAATAAA 57.586 29.630 6.36 0.00 0.00 1.40
1837 2134 9.761504 TTGATGCTTCATTTTGAGTCAATAAAA 57.238 25.926 6.36 0.00 0.00 1.52
1838 2135 9.932207 TGATGCTTCATTTTGAGTCAATAAAAT 57.068 25.926 6.36 0.85 37.06 1.82
1840 2137 8.761575 TGCTTCATTTTGAGTCAATAAAATCC 57.238 30.769 6.36 0.00 35.07 3.01
1841 2138 8.366401 TGCTTCATTTTGAGTCAATAAAATCCA 58.634 29.630 6.36 0.00 35.07 3.41
1842 2139 8.650714 GCTTCATTTTGAGTCAATAAAATCCAC 58.349 33.333 6.36 0.00 35.07 4.02
1843 2140 9.695526 CTTCATTTTGAGTCAATAAAATCCACA 57.304 29.630 6.36 0.00 35.07 4.17
1844 2141 9.474920 TTCATTTTGAGTCAATAAAATCCACAC 57.525 29.630 6.36 0.00 35.07 3.82
1845 2142 8.087750 TCATTTTGAGTCAATAAAATCCACACC 58.912 33.333 6.36 0.00 35.07 4.16
1846 2143 7.595819 TTTTGAGTCAATAAAATCCACACCT 57.404 32.000 6.36 0.00 0.00 4.00
1847 2144 7.595819 TTTGAGTCAATAAAATCCACACCTT 57.404 32.000 6.36 0.00 0.00 3.50
1848 2145 6.573664 TGAGTCAATAAAATCCACACCTTG 57.426 37.500 0.00 0.00 0.00 3.61
1849 2146 6.068010 TGAGTCAATAAAATCCACACCTTGT 58.932 36.000 0.00 0.00 0.00 3.16
1850 2147 6.206634 TGAGTCAATAAAATCCACACCTTGTC 59.793 38.462 0.00 0.00 0.00 3.18
1851 2148 6.068010 AGTCAATAAAATCCACACCTTGTCA 58.932 36.000 0.00 0.00 0.00 3.58
1852 2149 6.549364 AGTCAATAAAATCCACACCTTGTCAA 59.451 34.615 0.00 0.00 0.00 3.18
1853 2150 7.069331 AGTCAATAAAATCCACACCTTGTCAAA 59.931 33.333 0.00 0.00 0.00 2.69
1854 2151 7.382218 GTCAATAAAATCCACACCTTGTCAAAG 59.618 37.037 0.00 0.00 0.00 2.77
1855 2152 7.286546 TCAATAAAATCCACACCTTGTCAAAGA 59.713 33.333 0.00 0.00 35.19 2.52
1856 2153 5.930837 AAAATCCACACCTTGTCAAAGAA 57.069 34.783 0.00 0.00 35.19 2.52
1857 2154 5.930837 AAATCCACACCTTGTCAAAGAAA 57.069 34.783 0.00 0.00 35.19 2.52
1858 2155 5.930837 AATCCACACCTTGTCAAAGAAAA 57.069 34.783 0.00 0.00 35.19 2.29
1859 2156 5.930837 ATCCACACCTTGTCAAAGAAAAA 57.069 34.783 0.00 0.00 35.19 1.94
1860 2157 5.930837 TCCACACCTTGTCAAAGAAAAAT 57.069 34.783 0.00 0.00 35.19 1.82
1861 2158 5.659463 TCCACACCTTGTCAAAGAAAAATG 58.341 37.500 0.00 0.00 35.19 2.32
1862 2159 4.270808 CCACACCTTGTCAAAGAAAAATGC 59.729 41.667 0.00 0.00 35.19 3.56
1863 2160 4.869297 CACACCTTGTCAAAGAAAAATGCA 59.131 37.500 0.00 0.00 35.19 3.96
1864 2161 5.524646 CACACCTTGTCAAAGAAAAATGCAT 59.475 36.000 0.00 0.00 35.19 3.96
1865 2162 5.754890 ACACCTTGTCAAAGAAAAATGCATC 59.245 36.000 0.00 0.00 35.19 3.91
1866 2163 5.987347 CACCTTGTCAAAGAAAAATGCATCT 59.013 36.000 0.00 0.00 35.19 2.90
1867 2164 6.480981 CACCTTGTCAAAGAAAAATGCATCTT 59.519 34.615 0.00 0.00 37.49 2.40
1868 2165 6.480981 ACCTTGTCAAAGAAAAATGCATCTTG 59.519 34.615 0.00 0.00 36.09 3.02
1869 2166 5.910637 TGTCAAAGAAAAATGCATCTTGC 57.089 34.783 0.00 0.00 45.29 4.01
1870 2167 6.830295 CTTGTCAAAGAAAAATGCATCTTGCG 60.830 38.462 0.00 0.00 40.16 4.85
1871 2168 9.092757 CTTGTCAAAGAAAAATGCATCTTGCGT 62.093 37.037 0.00 0.00 40.16 5.24
1887 2184 3.090952 TGCGTTGCTTTATTGTTTGCT 57.909 38.095 0.00 0.00 0.00 3.91
2061 2359 0.393402 GAACATCGGGTTGGGGTACC 60.393 60.000 2.17 2.17 45.33 3.34
2128 2427 6.084277 CGTCTTACATTTAAAAACAGAGGGC 58.916 40.000 0.00 0.00 0.00 5.19
2129 2428 6.084277 GTCTTACATTTAAAAACAGAGGGCG 58.916 40.000 0.00 0.00 0.00 6.13
2130 2429 3.934457 ACATTTAAAAACAGAGGGCGG 57.066 42.857 0.00 0.00 0.00 6.13
2133 2432 2.642154 TTAAAAACAGAGGGCGGACA 57.358 45.000 0.00 0.00 0.00 4.02
2136 2435 0.400213 AAAACAGAGGGCGGACATGA 59.600 50.000 0.00 0.00 0.00 3.07
2142 2441 3.646162 ACAGAGGGCGGACATGATAATTA 59.354 43.478 0.00 0.00 0.00 1.40
2234 2611 9.621629 TGGTACTGGTGTATTTTAGATAATTGG 57.378 33.333 0.00 0.00 0.00 3.16
2238 2615 9.920946 ACTGGTGTATTTTAGATAATTGGTCAT 57.079 29.630 0.00 0.00 0.00 3.06
2240 2617 9.130661 TGGTGTATTTTAGATAATTGGTCATGG 57.869 33.333 0.00 0.00 0.00 3.66
2241 2618 9.131791 GGTGTATTTTAGATAATTGGTCATGGT 57.868 33.333 0.00 0.00 0.00 3.55
2247 2624 7.801716 TTAGATAATTGGTCATGGTACTTGC 57.198 36.000 0.00 0.00 0.00 4.01
2248 2625 5.133221 AGATAATTGGTCATGGTACTTGCC 58.867 41.667 0.00 0.00 0.00 4.52
2249 2626 1.750193 ATTGGTCATGGTACTTGCCG 58.250 50.000 0.00 0.00 0.00 5.69
2250 2627 0.687920 TTGGTCATGGTACTTGCCGA 59.312 50.000 0.00 0.00 0.00 5.54
2251 2628 0.687920 TGGTCATGGTACTTGCCGAA 59.312 50.000 0.00 0.00 0.00 4.30
2252 2629 1.072489 TGGTCATGGTACTTGCCGAAA 59.928 47.619 0.00 0.00 0.00 3.46
2253 2630 2.156098 GGTCATGGTACTTGCCGAAAA 58.844 47.619 0.00 0.00 0.00 2.29
2254 2631 2.161609 GGTCATGGTACTTGCCGAAAAG 59.838 50.000 0.00 0.00 0.00 2.27
2255 2632 2.161609 GTCATGGTACTTGCCGAAAAGG 59.838 50.000 0.00 0.00 44.97 3.11
2256 2633 2.159382 CATGGTACTTGCCGAAAAGGT 58.841 47.619 0.00 0.00 43.70 3.50
2257 2634 2.351706 TGGTACTTGCCGAAAAGGTT 57.648 45.000 0.00 0.00 43.70 3.50
2258 2635 2.223745 TGGTACTTGCCGAAAAGGTTC 58.776 47.619 0.00 0.00 43.70 3.62
2259 2636 1.538512 GGTACTTGCCGAAAAGGTTCC 59.461 52.381 0.00 0.00 43.70 3.62
2260 2637 1.538512 GTACTTGCCGAAAAGGTTCCC 59.461 52.381 2.72 0.00 43.70 3.97
2261 2638 0.826256 ACTTGCCGAAAAGGTTCCCC 60.826 55.000 2.72 0.00 43.70 4.81
2262 2639 1.862602 CTTGCCGAAAAGGTTCCCCG 61.863 60.000 0.00 0.00 43.70 5.73
2263 2640 3.060000 GCCGAAAAGGTTCCCCGG 61.060 66.667 0.00 0.00 43.70 5.73
2264 2641 2.751688 CCGAAAAGGTTCCCCGGA 59.248 61.111 0.73 0.00 42.49 5.14
2265 2642 1.073548 CCGAAAAGGTTCCCCGGAA 59.926 57.895 0.73 0.00 42.49 4.30
2266 2643 0.537828 CCGAAAAGGTTCCCCGGAAA 60.538 55.000 0.73 0.00 42.49 3.13
2267 2644 1.541379 CGAAAAGGTTCCCCGGAAAT 58.459 50.000 0.73 0.00 35.75 2.17
2268 2645 1.471287 CGAAAAGGTTCCCCGGAAATC 59.529 52.381 0.73 0.00 35.75 2.17
2269 2646 2.521126 GAAAAGGTTCCCCGGAAATCA 58.479 47.619 0.73 0.00 35.75 2.57
2270 2647 1.919240 AAAGGTTCCCCGGAAATCAC 58.081 50.000 0.73 0.00 35.75 3.06
2271 2648 0.774908 AAGGTTCCCCGGAAATCACA 59.225 50.000 0.73 0.00 35.75 3.58
2272 2649 0.774908 AGGTTCCCCGGAAATCACAA 59.225 50.000 0.73 0.00 35.75 3.33
2273 2650 1.146152 AGGTTCCCCGGAAATCACAAA 59.854 47.619 0.73 0.00 35.75 2.83
2274 2651 1.964933 GGTTCCCCGGAAATCACAAAA 59.035 47.619 0.73 0.00 35.75 2.44
2275 2652 2.288579 GGTTCCCCGGAAATCACAAAAC 60.289 50.000 0.73 0.00 35.75 2.43
2276 2653 2.626266 GTTCCCCGGAAATCACAAAACT 59.374 45.455 0.73 0.00 35.75 2.66
2277 2654 3.791953 TCCCCGGAAATCACAAAACTA 57.208 42.857 0.73 0.00 0.00 2.24
2278 2655 3.414269 TCCCCGGAAATCACAAAACTAC 58.586 45.455 0.73 0.00 0.00 2.73
2279 2656 3.073356 TCCCCGGAAATCACAAAACTACT 59.927 43.478 0.73 0.00 0.00 2.57
2280 2657 3.824443 CCCCGGAAATCACAAAACTACTT 59.176 43.478 0.73 0.00 0.00 2.24
2281 2658 4.279922 CCCCGGAAATCACAAAACTACTTT 59.720 41.667 0.73 0.00 0.00 2.66
2282 2659 5.474189 CCCCGGAAATCACAAAACTACTTTA 59.526 40.000 0.73 0.00 0.00 1.85
2283 2660 6.376177 CCCGGAAATCACAAAACTACTTTAC 58.624 40.000 0.73 0.00 0.00 2.01
2284 2661 6.075280 CCGGAAATCACAAAACTACTTTACG 58.925 40.000 0.00 0.00 31.48 3.18
2285 2662 6.293027 CCGGAAATCACAAAACTACTTTACGT 60.293 38.462 0.00 0.00 30.08 3.57
2286 2663 6.788930 CGGAAATCACAAAACTACTTTACGTC 59.211 38.462 0.00 0.00 0.00 4.34
2287 2664 7.517101 CGGAAATCACAAAACTACTTTACGTCA 60.517 37.037 0.00 0.00 0.00 4.35
2288 2665 8.287503 GGAAATCACAAAACTACTTTACGTCAT 58.712 33.333 0.00 0.00 0.00 3.06
2291 2668 8.821147 ATCACAAAACTACTTTACGTCATACA 57.179 30.769 0.00 0.00 0.00 2.29
2292 2669 8.064447 TCACAAAACTACTTTACGTCATACAC 57.936 34.615 0.00 0.00 0.00 2.90
2293 2670 7.705752 TCACAAAACTACTTTACGTCATACACA 59.294 33.333 0.00 0.00 0.00 3.72
2294 2671 8.329583 CACAAAACTACTTTACGTCATACACAA 58.670 33.333 0.00 0.00 0.00 3.33
2295 2672 8.881743 ACAAAACTACTTTACGTCATACACAAA 58.118 29.630 0.00 0.00 0.00 2.83
2296 2673 9.150653 CAAAACTACTTTACGTCATACACAAAC 57.849 33.333 0.00 0.00 0.00 2.93
2297 2674 8.422973 AAACTACTTTACGTCATACACAAACA 57.577 30.769 0.00 0.00 0.00 2.83
2298 2675 8.597662 AACTACTTTACGTCATACACAAACAT 57.402 30.769 0.00 0.00 0.00 2.71
2299 2676 9.695526 AACTACTTTACGTCATACACAAACATA 57.304 29.630 0.00 0.00 0.00 2.29
2300 2677 9.865321 ACTACTTTACGTCATACACAAACATAT 57.135 29.630 0.00 0.00 0.00 1.78
2308 2685 9.431887 ACGTCATACACAAACATATTTTCTAGT 57.568 29.630 0.00 0.00 0.00 2.57
2329 2706 9.161572 TCTAGTACTATCATCTACTTCCTCTGT 57.838 37.037 2.33 0.00 0.00 3.41
2330 2707 9.431887 CTAGTACTATCATCTACTTCCTCTGTC 57.568 40.741 2.33 0.00 0.00 3.51
2331 2708 7.228590 AGTACTATCATCTACTTCCTCTGTCC 58.771 42.308 0.00 0.00 0.00 4.02
2332 2709 5.390387 ACTATCATCTACTTCCTCTGTCCC 58.610 45.833 0.00 0.00 0.00 4.46
2333 2710 3.757947 TCATCTACTTCCTCTGTCCCA 57.242 47.619 0.00 0.00 0.00 4.37
2334 2711 4.061131 TCATCTACTTCCTCTGTCCCAA 57.939 45.455 0.00 0.00 0.00 4.12
2335 2712 4.425772 TCATCTACTTCCTCTGTCCCAAA 58.574 43.478 0.00 0.00 0.00 3.28
2336 2713 4.844085 TCATCTACTTCCTCTGTCCCAAAA 59.156 41.667 0.00 0.00 0.00 2.44
2337 2714 5.488919 TCATCTACTTCCTCTGTCCCAAAAT 59.511 40.000 0.00 0.00 0.00 1.82
2338 2715 5.165961 TCTACTTCCTCTGTCCCAAAATG 57.834 43.478 0.00 0.00 0.00 2.32
2339 2716 3.884037 ACTTCCTCTGTCCCAAAATGT 57.116 42.857 0.00 0.00 0.00 2.71
2340 2717 4.993705 ACTTCCTCTGTCCCAAAATGTA 57.006 40.909 0.00 0.00 0.00 2.29
2341 2718 5.319043 ACTTCCTCTGTCCCAAAATGTAA 57.681 39.130 0.00 0.00 0.00 2.41
2342 2719 5.316987 ACTTCCTCTGTCCCAAAATGTAAG 58.683 41.667 0.00 0.00 0.00 2.34
2343 2720 5.073144 ACTTCCTCTGTCCCAAAATGTAAGA 59.927 40.000 0.00 0.00 0.00 2.10
2344 2721 5.576563 TCCTCTGTCCCAAAATGTAAGAA 57.423 39.130 0.00 0.00 0.00 2.52
2345 2722 5.313712 TCCTCTGTCCCAAAATGTAAGAAC 58.686 41.667 0.00 0.00 0.00 3.01
2346 2723 4.154195 CCTCTGTCCCAAAATGTAAGAACG 59.846 45.833 0.00 0.00 0.00 3.95
2347 2724 4.710324 TCTGTCCCAAAATGTAAGAACGT 58.290 39.130 0.00 0.00 0.00 3.99
2348 2725 5.127491 TCTGTCCCAAAATGTAAGAACGTT 58.873 37.500 0.00 0.00 36.36 3.99
2349 2726 5.591067 TCTGTCCCAAAATGTAAGAACGTTT 59.409 36.000 0.46 0.00 44.83 3.60
2363 2740 9.096160 TGTAAGAACGTTTTTAACACTACATCA 57.904 29.630 12.36 1.71 0.00 3.07
2364 2741 9.577003 GTAAGAACGTTTTTAACACTACATCAG 57.423 33.333 12.36 0.00 0.00 2.90
2365 2742 7.781548 AGAACGTTTTTAACACTACATCAGT 57.218 32.000 0.46 0.00 38.32 3.41
2378 2755 6.044512 ACTACATCAGTGTCAAAAACGTTC 57.955 37.500 0.00 0.00 39.77 3.95
2379 2756 4.955925 ACATCAGTGTCAAAAACGTTCA 57.044 36.364 0.00 0.00 31.41 3.18
2380 2757 5.499139 ACATCAGTGTCAAAAACGTTCAT 57.501 34.783 0.00 0.00 31.41 2.57
2381 2758 6.612247 ACATCAGTGTCAAAAACGTTCATA 57.388 33.333 0.00 0.00 31.41 2.15
2382 2759 7.202016 ACATCAGTGTCAAAAACGTTCATAT 57.798 32.000 0.00 0.00 31.41 1.78
2383 2760 8.317891 ACATCAGTGTCAAAAACGTTCATATA 57.682 30.769 0.00 0.00 31.41 0.86
2384 2761 8.946085 ACATCAGTGTCAAAAACGTTCATATAT 58.054 29.630 0.00 0.00 31.41 0.86
2385 2762 9.773328 CATCAGTGTCAAAAACGTTCATATATT 57.227 29.630 0.00 0.00 0.00 1.28
2390 2767 9.445786 GTGTCAAAAACGTTCATATATTATGGG 57.554 33.333 0.00 0.00 0.00 4.00
2391 2768 9.397280 TGTCAAAAACGTTCATATATTATGGGA 57.603 29.630 0.00 0.00 0.00 4.37
2392 2769 9.659830 GTCAAAAACGTTCATATATTATGGGAC 57.340 33.333 0.00 0.00 0.00 4.46
2415 2792 9.752961 GGACAGAGGAAGTAATTAATTACTCTC 57.247 37.037 29.10 30.02 45.50 3.20
2416 2793 9.453325 GACAGAGGAAGTAATTAATTACTCTCG 57.547 37.037 29.10 25.12 45.50 4.04
2417 2794 8.968969 ACAGAGGAAGTAATTAATTACTCTCGT 58.031 33.333 29.10 25.59 45.50 4.18
2418 2795 9.804758 CAGAGGAAGTAATTAATTACTCTCGTT 57.195 33.333 29.10 20.24 45.50 3.85
2419 2796 9.804758 AGAGGAAGTAATTAATTACTCTCGTTG 57.195 33.333 31.37 0.00 45.50 4.10
2435 2812 8.603242 ACTCTCGTTGTATATTCAAAACAAGT 57.397 30.769 0.00 0.00 34.01 3.16
2436 2813 9.701098 ACTCTCGTTGTATATTCAAAACAAGTA 57.299 29.630 0.00 0.00 34.01 2.24
2461 2838 5.198116 TGTGACTACAAAATATGTTCGCG 57.802 39.130 0.00 0.00 43.63 5.87
2462 2839 4.019867 GTGACTACAAAATATGTTCGCGC 58.980 43.478 0.00 0.00 43.63 6.86
2463 2840 3.680458 TGACTACAAAATATGTTCGCGCA 59.320 39.130 8.75 0.00 43.63 6.09
2464 2841 4.331443 TGACTACAAAATATGTTCGCGCAT 59.669 37.500 8.75 2.25 43.63 4.73
2465 2842 5.163804 TGACTACAAAATATGTTCGCGCATT 60.164 36.000 8.75 0.00 43.63 3.56
2466 2843 6.036191 TGACTACAAAATATGTTCGCGCATTA 59.964 34.615 8.75 0.00 43.63 1.90
2467 2844 6.954944 ACTACAAAATATGTTCGCGCATTAT 58.045 32.000 8.75 0.00 43.63 1.28
2468 2845 8.078959 ACTACAAAATATGTTCGCGCATTATA 57.921 30.769 8.75 0.36 43.63 0.98
2469 2846 8.221100 ACTACAAAATATGTTCGCGCATTATAG 58.779 33.333 8.75 4.60 43.63 1.31
2470 2847 7.184800 ACAAAATATGTTCGCGCATTATAGA 57.815 32.000 8.75 0.00 40.06 1.98
2471 2848 7.635423 ACAAAATATGTTCGCGCATTATAGAA 58.365 30.769 8.75 0.00 40.06 2.10
2472 2849 8.126074 ACAAAATATGTTCGCGCATTATAGAAA 58.874 29.630 8.75 0.00 40.06 2.52
2473 2850 8.952979 CAAAATATGTTCGCGCATTATAGAAAA 58.047 29.630 8.75 0.00 0.00 2.29
2474 2851 8.488979 AAATATGTTCGCGCATTATAGAAAAC 57.511 30.769 8.75 0.00 0.00 2.43
2475 2852 4.930463 TGTTCGCGCATTATAGAAAACA 57.070 36.364 8.75 0.00 0.00 2.83
2476 2853 5.284428 TGTTCGCGCATTATAGAAAACAA 57.716 34.783 8.75 0.00 0.00 2.83
2477 2854 5.874831 TGTTCGCGCATTATAGAAAACAAT 58.125 33.333 8.75 0.00 0.00 2.71
2478 2855 5.963004 TGTTCGCGCATTATAGAAAACAATC 59.037 36.000 8.75 0.00 0.00 2.67
2479 2856 5.726729 TCGCGCATTATAGAAAACAATCA 57.273 34.783 8.75 0.00 0.00 2.57
2480 2857 6.299023 TCGCGCATTATAGAAAACAATCAT 57.701 33.333 8.75 0.00 0.00 2.45
2481 2858 6.135400 TCGCGCATTATAGAAAACAATCATG 58.865 36.000 8.75 0.00 0.00 3.07
2482 2859 5.909054 CGCGCATTATAGAAAACAATCATGT 59.091 36.000 8.75 0.00 43.14 3.21
2483 2860 7.042389 TCGCGCATTATAGAAAACAATCATGTA 60.042 33.333 8.75 0.00 39.40 2.29
2484 2861 7.746034 CGCGCATTATAGAAAACAATCATGTAT 59.254 33.333 8.75 0.00 39.40 2.29
2485 2862 9.398170 GCGCATTATAGAAAACAATCATGTATT 57.602 29.630 0.30 0.00 39.40 1.89
2497 2874 9.643693 AAACAATCATGTATTTCAGAACATTCC 57.356 29.630 0.00 0.00 39.40 3.01
2498 2875 8.585471 ACAATCATGTATTTCAGAACATTCCT 57.415 30.769 0.00 0.00 38.24 3.36
2499 2876 8.464404 ACAATCATGTATTTCAGAACATTCCTG 58.536 33.333 0.00 0.00 38.24 3.86
2500 2877 8.464404 CAATCATGTATTTCAGAACATTCCTGT 58.536 33.333 0.00 0.00 34.12 4.00
2501 2878 9.685276 AATCATGTATTTCAGAACATTCCTGTA 57.315 29.630 0.00 0.00 34.12 2.74
2502 2879 9.857656 ATCATGTATTTCAGAACATTCCTGTAT 57.142 29.630 0.00 0.00 34.12 2.29
2517 2894 9.797642 ACATTCCTGTATATAATGAAATGCTCA 57.202 29.630 0.00 0.00 34.01 4.26
2533 2910 9.932207 TGAAATGCTCATATTTTCAGAAAATGT 57.068 25.926 25.51 18.64 41.01 2.71
2537 2914 9.715121 ATGCTCATATTTTCAGAAAATGTTTGT 57.285 25.926 25.51 6.84 41.01 2.83
2538 2915 8.980610 TGCTCATATTTTCAGAAAATGTTTGTG 58.019 29.630 25.51 20.03 41.01 3.33
2539 2916 8.981647 GCTCATATTTTCAGAAAATGTTTGTGT 58.018 29.630 25.51 5.57 41.01 3.72
2541 2918 9.814899 TCATATTTTCAGAAAATGTTTGTGTGT 57.185 25.926 25.51 4.31 41.01 3.72
2545 2922 7.953158 TTTCAGAAAATGTTTGTGTGTTTCA 57.047 28.000 0.00 0.00 31.94 2.69
2546 2923 8.545229 TTTCAGAAAATGTTTGTGTGTTTCAT 57.455 26.923 0.00 0.00 31.94 2.57
2547 2924 9.645059 TTTCAGAAAATGTTTGTGTGTTTCATA 57.355 25.926 0.00 0.00 31.94 2.15
2548 2925 9.645059 TTCAGAAAATGTTTGTGTGTTTCATAA 57.355 25.926 0.00 0.00 31.94 1.90
2549 2926 9.645059 TCAGAAAATGTTTGTGTGTTTCATAAA 57.355 25.926 0.00 0.00 35.39 1.40
2561 2938 9.921637 TGTGTGTTTCATAAAAAGTTTTCTTCT 57.078 25.926 0.32 0.00 39.48 2.85
2563 2940 9.921637 TGTGTTTCATAAAAAGTTTTCTTCTGT 57.078 25.926 0.32 0.00 39.48 3.41
2616 2993 3.859411 GTGTCCACACAGGTTTTTCAA 57.141 42.857 4.92 0.00 45.75 2.69
2617 2994 4.181309 GTGTCCACACAGGTTTTTCAAA 57.819 40.909 4.92 0.00 45.75 2.69
2619 2996 4.991687 GTGTCCACACAGGTTTTTCAAAAA 59.008 37.500 4.92 0.00 45.75 1.94
2620 2997 5.641636 GTGTCCACACAGGTTTTTCAAAAAT 59.358 36.000 4.92 0.00 45.75 1.82
2621 2998 6.814146 GTGTCCACACAGGTTTTTCAAAAATA 59.186 34.615 4.92 0.00 45.75 1.40
2623 3000 6.478673 GTCCACACAGGTTTTTCAAAAATAGG 59.521 38.462 0.00 0.00 39.02 2.57
2624 3001 5.757808 CCACACAGGTTTTTCAAAAATAGGG 59.242 40.000 0.00 0.00 0.00 3.53
2625 3002 6.407525 CCACACAGGTTTTTCAAAAATAGGGA 60.408 38.462 0.00 0.00 0.00 4.20
2627 3004 7.224557 CACACAGGTTTTTCAAAAATAGGGAAG 59.775 37.037 0.00 0.00 0.00 3.46
2629 3006 8.417884 CACAGGTTTTTCAAAAATAGGGAAGTA 58.582 33.333 0.00 0.00 0.00 2.24
2631 3008 8.417884 CAGGTTTTTCAAAAATAGGGAAGTACA 58.582 33.333 0.00 0.00 0.00 2.90
2633 3010 9.602568 GGTTTTTCAAAAATAGGGAAGTACAAA 57.397 29.630 0.00 0.00 0.00 2.83
2641 3018 6.835819 AATAGGGAAGTACAAAGAAAAGGC 57.164 37.500 0.00 0.00 0.00 4.35
2642 3019 4.178956 AGGGAAGTACAAAGAAAAGGCA 57.821 40.909 0.00 0.00 0.00 4.75
2645 3022 4.098807 GGGAAGTACAAAGAAAAGGCAACA 59.901 41.667 0.00 0.00 41.41 3.33
2647 3024 6.280643 GGAAGTACAAAGAAAAGGCAACAAT 58.719 36.000 0.00 0.00 41.41 2.71
2648 3025 7.430441 GGAAGTACAAAGAAAAGGCAACAATA 58.570 34.615 0.00 0.00 41.41 1.90
2739 3198 6.392353 TGCAAGCATAATGAACATTTTTCG 57.608 33.333 5.37 0.00 32.50 3.46
2778 3239 7.943079 TTCAATACATGATGAACACTCCAAT 57.057 32.000 0.00 0.00 38.03 3.16
2782 3243 8.676401 CAATACATGATGAACACTCCAATTACA 58.324 33.333 0.00 0.00 0.00 2.41
2783 3244 6.500684 ACATGATGAACACTCCAATTACAC 57.499 37.500 0.00 0.00 0.00 2.90
2793 3254 9.162764 GAACACTCCAATTACACTGTGTATATT 57.837 33.333 20.31 17.65 37.62 1.28
2794 3255 9.515226 AACACTCCAATTACACTGTGTATATTT 57.485 29.630 20.31 12.02 37.62 1.40
2795 3256 9.515226 ACACTCCAATTACACTGTGTATATTTT 57.485 29.630 20.31 9.89 36.96 1.82
2796 3257 9.988350 CACTCCAATTACACTGTGTATATTTTC 57.012 33.333 20.31 0.00 32.20 2.29
2797 3258 9.733556 ACTCCAATTACACTGTGTATATTTTCA 57.266 29.630 20.31 5.21 32.20 2.69
2829 3290 8.519799 TGTGATTCCTAAATAAGGTGATTTCC 57.480 34.615 0.00 0.00 46.62 3.13
2830 3291 7.282224 TGTGATTCCTAAATAAGGTGATTTCCG 59.718 37.037 0.00 0.00 46.62 4.30
2831 3292 6.262273 TGATTCCTAAATAAGGTGATTTCCGC 59.738 38.462 0.00 0.00 46.62 5.54
2832 3293 5.105567 TCCTAAATAAGGTGATTTCCGCA 57.894 39.130 0.00 0.00 46.62 5.69
2833 3294 5.690865 TCCTAAATAAGGTGATTTCCGCAT 58.309 37.500 0.00 0.00 46.62 4.73
2834 3295 5.530915 TCCTAAATAAGGTGATTTCCGCATG 59.469 40.000 0.00 0.00 46.62 4.06
2835 3296 3.715628 AATAAGGTGATTTCCGCATGC 57.284 42.857 7.91 7.91 0.00 4.06
2836 3297 2.121291 TAAGGTGATTTCCGCATGCA 57.879 45.000 19.57 0.00 0.00 3.96
2837 3298 1.255882 AAGGTGATTTCCGCATGCAA 58.744 45.000 19.57 4.79 0.00 4.08
2838 3299 1.255882 AGGTGATTTCCGCATGCAAA 58.744 45.000 19.57 12.04 0.00 3.68
2839 3300 1.617850 AGGTGATTTCCGCATGCAAAA 59.382 42.857 19.57 17.06 0.00 2.44
2840 3301 1.726248 GGTGATTTCCGCATGCAAAAC 59.274 47.619 19.57 10.74 0.00 2.43
2841 3302 2.610232 GGTGATTTCCGCATGCAAAACT 60.610 45.455 19.57 5.06 0.00 2.66
2842 3303 3.059166 GTGATTTCCGCATGCAAAACTT 58.941 40.909 19.57 3.60 0.00 2.66
2843 3304 4.233789 GTGATTTCCGCATGCAAAACTTA 58.766 39.130 19.57 5.10 0.00 2.24
2844 3305 4.864247 GTGATTTCCGCATGCAAAACTTAT 59.136 37.500 19.57 2.54 0.00 1.73
2845 3306 5.348451 GTGATTTCCGCATGCAAAACTTATT 59.652 36.000 19.57 2.18 0.00 1.40
2846 3307 5.931146 TGATTTCCGCATGCAAAACTTATTT 59.069 32.000 19.57 1.48 0.00 1.40
2847 3308 5.588568 TTTCCGCATGCAAAACTTATTTG 57.411 34.783 19.57 0.00 0.00 2.32
2848 3309 4.511617 TCCGCATGCAAAACTTATTTGA 57.488 36.364 19.57 0.00 0.00 2.69
2849 3310 4.233789 TCCGCATGCAAAACTTATTTGAC 58.766 39.130 19.57 0.00 0.00 3.18
2850 3311 3.986572 CCGCATGCAAAACTTATTTGACA 59.013 39.130 19.57 3.53 0.00 3.58
2851 3312 4.447054 CCGCATGCAAAACTTATTTGACAA 59.553 37.500 19.57 0.00 0.00 3.18
2852 3313 5.120519 CCGCATGCAAAACTTATTTGACAAT 59.879 36.000 19.57 0.00 0.00 2.71
2853 3314 6.347563 CCGCATGCAAAACTTATTTGACAATT 60.348 34.615 19.57 0.00 0.00 2.32
2854 3315 6.517034 CGCATGCAAAACTTATTTGACAATTG 59.483 34.615 19.57 3.24 0.00 2.32
2855 3316 6.303733 GCATGCAAAACTTATTTGACAATTGC 59.696 34.615 14.21 11.63 41.56 3.56
2856 3317 6.915544 TGCAAAACTTATTTGACAATTGCA 57.084 29.167 15.54 15.54 46.60 4.08
2857 3318 7.493743 TGCAAAACTTATTTGACAATTGCAT 57.506 28.000 15.54 0.00 44.70 3.96
2858 3319 7.353497 TGCAAAACTTATTTGACAATTGCATG 58.647 30.769 15.54 0.00 44.70 4.06
2859 3320 7.012138 TGCAAAACTTATTTGACAATTGCATGT 59.988 29.630 15.54 0.00 44.70 3.21
2860 3321 7.856894 GCAAAACTTATTTGACAATTGCATGTT 59.143 29.630 5.05 3.62 41.03 2.71
2861 3322 9.372541 CAAAACTTATTTGACAATTGCATGTTC 57.627 29.630 5.05 0.00 32.57 3.18
2862 3323 8.659925 AAACTTATTTGACAATTGCATGTTCA 57.340 26.923 5.05 0.00 32.57 3.18
2863 3324 7.642071 ACTTATTTGACAATTGCATGTTCAC 57.358 32.000 5.05 0.00 32.57 3.18
2864 3325 6.646240 ACTTATTTGACAATTGCATGTTCACC 59.354 34.615 5.05 0.00 32.57 4.02
2865 3326 3.383620 TTGACAATTGCATGTTCACCC 57.616 42.857 5.05 0.00 32.57 4.61
2866 3327 2.314246 TGACAATTGCATGTTCACCCA 58.686 42.857 5.05 0.00 32.57 4.51
2867 3328 2.296752 TGACAATTGCATGTTCACCCAG 59.703 45.455 5.05 0.00 32.57 4.45
2868 3329 1.001181 ACAATTGCATGTTCACCCAGC 59.999 47.619 5.05 0.00 0.00 4.85
2869 3330 0.609662 AATTGCATGTTCACCCAGCC 59.390 50.000 0.00 0.00 0.00 4.85
2870 3331 1.259840 ATTGCATGTTCACCCAGCCC 61.260 55.000 0.00 0.00 0.00 5.19
2871 3332 3.070576 GCATGTTCACCCAGCCCC 61.071 66.667 0.00 0.00 0.00 5.80
2872 3333 2.751436 CATGTTCACCCAGCCCCG 60.751 66.667 0.00 0.00 0.00 5.73
2873 3334 4.740822 ATGTTCACCCAGCCCCGC 62.741 66.667 0.00 0.00 0.00 6.13
2875 3336 4.966787 GTTCACCCAGCCCCGCAA 62.967 66.667 0.00 0.00 0.00 4.85
2876 3337 4.966787 TTCACCCAGCCCCGCAAC 62.967 66.667 0.00 0.00 0.00 4.17
2889 3350 2.100216 GCAACTGCGCCCGTTATG 59.900 61.111 4.18 0.00 0.00 1.90
2890 3351 2.100216 CAACTGCGCCCGTTATGC 59.900 61.111 4.18 0.00 0.00 3.14
2905 3366 3.667087 TGCGGAAGTTGCATGTCC 58.333 55.556 0.00 0.00 37.44 4.02
2906 3367 1.228094 TGCGGAAGTTGCATGTCCA 60.228 52.632 10.46 0.00 37.44 4.02
2907 3368 1.210155 GCGGAAGTTGCATGTCCAC 59.790 57.895 10.46 0.00 0.00 4.02
2908 3369 1.514678 GCGGAAGTTGCATGTCCACA 61.515 55.000 10.46 0.00 0.00 4.17
2909 3370 0.238289 CGGAAGTTGCATGTCCACAC 59.762 55.000 10.46 0.00 0.00 3.82
2910 3371 0.598065 GGAAGTTGCATGTCCACACC 59.402 55.000 6.07 0.00 0.00 4.16
2911 3372 0.238289 GAAGTTGCATGTCCACACCG 59.762 55.000 0.00 0.00 0.00 4.94
2912 3373 1.172180 AAGTTGCATGTCCACACCGG 61.172 55.000 0.00 0.00 0.00 5.28
2913 3374 2.282110 TTGCATGTCCACACCGGG 60.282 61.111 6.32 0.00 34.36 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.325660 AGGCTCAACTCATATAATTGTGTTG 57.674 36.000 12.13 12.13 45.57 3.33
1 2 7.499232 GGTAGGCTCAACTCATATAATTGTGTT 59.501 37.037 0.00 0.00 34.58 3.32
2 3 6.992715 GGTAGGCTCAACTCATATAATTGTGT 59.007 38.462 0.00 0.00 0.00 3.72
3 4 6.146184 CGGTAGGCTCAACTCATATAATTGTG 59.854 42.308 0.00 0.00 0.00 3.33
4 5 6.223852 CGGTAGGCTCAACTCATATAATTGT 58.776 40.000 0.00 0.00 0.00 2.71
5 6 5.639506 CCGGTAGGCTCAACTCATATAATTG 59.360 44.000 0.00 0.00 0.00 2.32
6 7 5.280011 CCCGGTAGGCTCAACTCATATAATT 60.280 44.000 0.00 0.00 35.76 1.40
7 8 4.223032 CCCGGTAGGCTCAACTCATATAAT 59.777 45.833 0.00 0.00 35.76 1.28
8 9 3.576982 CCCGGTAGGCTCAACTCATATAA 59.423 47.826 0.00 0.00 35.76 0.98
9 10 3.162666 CCCGGTAGGCTCAACTCATATA 58.837 50.000 0.00 0.00 35.76 0.86
10 11 1.971357 CCCGGTAGGCTCAACTCATAT 59.029 52.381 0.00 0.00 35.76 1.78
11 12 1.063492 TCCCGGTAGGCTCAACTCATA 60.063 52.381 0.00 0.00 35.76 2.15
12 13 0.325296 TCCCGGTAGGCTCAACTCAT 60.325 55.000 0.00 0.00 35.76 2.90
13 14 1.077805 TCCCGGTAGGCTCAACTCA 59.922 57.895 0.00 0.00 35.76 3.41
14 15 1.255667 TGTCCCGGTAGGCTCAACTC 61.256 60.000 0.00 0.00 35.76 3.01
15 16 0.617820 ATGTCCCGGTAGGCTCAACT 60.618 55.000 0.00 0.00 35.76 3.16
16 17 0.462047 CATGTCCCGGTAGGCTCAAC 60.462 60.000 0.00 0.00 35.76 3.18
17 18 1.904771 CATGTCCCGGTAGGCTCAA 59.095 57.895 0.00 0.00 35.76 3.02
18 19 2.731571 GCATGTCCCGGTAGGCTCA 61.732 63.158 0.00 0.00 35.76 4.26
19 20 2.109181 GCATGTCCCGGTAGGCTC 59.891 66.667 0.00 0.00 35.76 4.70
20 21 2.599139 TAGGCATGTCCCGGTAGGCT 62.599 60.000 0.00 5.45 38.69 4.58
21 22 2.100879 CTAGGCATGTCCCGGTAGGC 62.101 65.000 0.00 0.00 35.76 3.93
22 23 1.472662 CCTAGGCATGTCCCGGTAGG 61.473 65.000 0.00 0.00 34.51 3.18
23 24 1.472662 CCCTAGGCATGTCCCGGTAG 61.473 65.000 2.05 0.00 34.51 3.18
24 25 1.458777 CCCTAGGCATGTCCCGGTA 60.459 63.158 2.05 0.00 34.51 4.02
25 26 2.768344 CCCTAGGCATGTCCCGGT 60.768 66.667 2.05 0.00 34.51 5.28
26 27 1.632018 TTTCCCTAGGCATGTCCCGG 61.632 60.000 2.05 0.00 34.51 5.73
27 28 0.474184 ATTTCCCTAGGCATGTCCCG 59.526 55.000 2.05 0.00 34.51 5.14
28 29 2.755952 AATTTCCCTAGGCATGTCCC 57.244 50.000 2.05 0.00 34.51 4.46
29 30 6.538945 TTTTAAATTTCCCTAGGCATGTCC 57.461 37.500 2.05 0.00 0.00 4.02
30 31 7.147742 TGGATTTTAAATTTCCCTAGGCATGTC 60.148 37.037 2.05 0.00 0.00 3.06
31 32 6.671779 TGGATTTTAAATTTCCCTAGGCATGT 59.328 34.615 2.05 0.00 0.00 3.21
32 33 7.123355 TGGATTTTAAATTTCCCTAGGCATG 57.877 36.000 2.05 0.00 0.00 4.06
33 34 7.747809 TTGGATTTTAAATTTCCCTAGGCAT 57.252 32.000 2.05 0.00 0.00 4.40
34 35 7.401493 TCATTGGATTTTAAATTTCCCTAGGCA 59.599 33.333 2.05 0.00 0.00 4.75
35 36 7.791029 TCATTGGATTTTAAATTTCCCTAGGC 58.209 34.615 2.05 0.00 0.00 3.93
36 37 7.928167 GCTCATTGGATTTTAAATTTCCCTAGG 59.072 37.037 0.06 0.06 0.00 3.02
47 48 4.095946 AGCCTTGGCTCATTGGATTTTAA 58.904 39.130 8.56 0.00 0.00 1.52
48 49 3.701040 GAGCCTTGGCTCATTGGATTTTA 59.299 43.478 30.25 0.00 36.86 1.52
57 58 1.343884 ACTAGGAGAGCCTTGGCTCAT 60.344 52.381 34.40 24.20 43.90 2.90
72 73 3.412386 CCAAGACCTTTTGTGGACTAGG 58.588 50.000 0.00 0.00 32.24 3.02
78 79 1.068333 CATCGCCAAGACCTTTTGTGG 60.068 52.381 0.00 0.00 0.00 4.17
94 95 1.280982 CGACTTGGGTGACATCATCG 58.719 55.000 0.00 0.00 0.00 3.84
97 98 0.324614 ATGCGACTTGGGTGACATCA 59.675 50.000 0.00 0.00 0.00 3.07
140 141 1.943968 GCCTAACACTTGTGCATCGGA 60.944 52.381 0.10 0.00 0.00 4.55
141 142 0.447801 GCCTAACACTTGTGCATCGG 59.552 55.000 0.10 0.00 0.00 4.18
142 143 0.447801 GGCCTAACACTTGTGCATCG 59.552 55.000 0.00 0.00 0.00 3.84
152 153 4.419921 CCCCCACGGGCCTAACAC 62.420 72.222 0.84 0.00 44.50 3.32
166 167 1.004200 CCAAGACACGTGTACCCCC 60.004 63.158 23.44 8.84 0.00 5.40
167 168 1.004200 CCCAAGACACGTGTACCCC 60.004 63.158 23.44 9.26 0.00 4.95
168 169 0.320160 GACCCAAGACACGTGTACCC 60.320 60.000 23.44 9.68 0.00 3.69
169 170 0.677842 AGACCCAAGACACGTGTACC 59.322 55.000 23.44 10.50 0.00 3.34
170 171 2.521105 AAGACCCAAGACACGTGTAC 57.479 50.000 23.44 15.02 0.00 2.90
171 172 2.559668 CCTAAGACCCAAGACACGTGTA 59.440 50.000 23.44 0.11 0.00 2.90
172 173 1.343465 CCTAAGACCCAAGACACGTGT 59.657 52.381 23.64 23.64 0.00 4.49
173 174 1.939838 GCCTAAGACCCAAGACACGTG 60.940 57.143 15.48 15.48 0.00 4.49
174 175 0.320697 GCCTAAGACCCAAGACACGT 59.679 55.000 0.00 0.00 0.00 4.49
175 176 0.320374 TGCCTAAGACCCAAGACACG 59.680 55.000 0.00 0.00 0.00 4.49
176 177 2.789409 ATGCCTAAGACCCAAGACAC 57.211 50.000 0.00 0.00 0.00 3.67
177 178 2.026262 GGAATGCCTAAGACCCAAGACA 60.026 50.000 0.00 0.00 0.00 3.41
178 179 2.239907 AGGAATGCCTAAGACCCAAGAC 59.760 50.000 0.00 0.00 44.74 3.01
179 180 2.239654 CAGGAATGCCTAAGACCCAAGA 59.760 50.000 0.00 0.00 44.80 3.02
180 181 2.648059 CAGGAATGCCTAAGACCCAAG 58.352 52.381 0.00 0.00 44.80 3.61
181 182 1.284785 CCAGGAATGCCTAAGACCCAA 59.715 52.381 0.00 0.00 44.80 4.12
182 183 0.918983 CCAGGAATGCCTAAGACCCA 59.081 55.000 0.00 0.00 44.80 4.51
183 184 0.919710 ACCAGGAATGCCTAAGACCC 59.080 55.000 0.00 0.00 44.80 4.46
184 185 2.808906 AACCAGGAATGCCTAAGACC 57.191 50.000 0.00 0.00 44.80 3.85
185 186 5.254115 ACTAAAACCAGGAATGCCTAAGAC 58.746 41.667 0.00 0.00 44.80 3.01
186 187 5.013704 TGACTAAAACCAGGAATGCCTAAGA 59.986 40.000 0.00 0.00 44.80 2.10
187 188 5.253330 TGACTAAAACCAGGAATGCCTAAG 58.747 41.667 0.00 0.00 44.80 2.18
188 189 5.222048 ACTGACTAAAACCAGGAATGCCTAA 60.222 40.000 0.00 0.00 44.80 2.69
189 190 4.288626 ACTGACTAAAACCAGGAATGCCTA 59.711 41.667 0.00 0.00 44.80 3.93
191 192 3.421844 ACTGACTAAAACCAGGAATGCC 58.578 45.455 0.00 0.00 34.85 4.40
192 193 5.453567 AAACTGACTAAAACCAGGAATGC 57.546 39.130 0.00 0.00 34.85 3.56
193 194 7.277174 AGAAAACTGACTAAAACCAGGAATG 57.723 36.000 0.00 0.00 34.85 2.67
194 195 7.780271 AGAAGAAAACTGACTAAAACCAGGAAT 59.220 33.333 0.00 0.00 34.85 3.01
195 196 7.116736 AGAAGAAAACTGACTAAAACCAGGAA 58.883 34.615 0.00 0.00 34.85 3.36
196 197 6.659824 AGAAGAAAACTGACTAAAACCAGGA 58.340 36.000 0.00 0.00 34.85 3.86
197 198 6.944234 AGAAGAAAACTGACTAAAACCAGG 57.056 37.500 0.00 0.00 34.85 4.45
254 412 9.418045 CAAAAAGGAAGAAAAACTGAACAAGTA 57.582 29.630 0.00 0.00 38.56 2.24
255 413 7.931407 ACAAAAAGGAAGAAAAACTGAACAAGT 59.069 29.630 0.00 0.00 42.60 3.16
343 503 5.461032 TGCGGGAAAATGTTTGAAGTATT 57.539 34.783 0.00 0.00 0.00 1.89
419 580 7.794041 AGATAAAATTGTATACCCGTGTACCA 58.206 34.615 0.00 0.00 0.00 3.25
461 622 6.339587 TCGGAAAACTTTCATTGCCTATTT 57.660 33.333 4.67 0.00 38.92 1.40
494 749 6.403049 CCACTTAGGTCCTTGTTTTGTTTTT 58.597 36.000 0.00 0.00 0.00 1.94
495 750 5.105106 CCCACTTAGGTCCTTGTTTTGTTTT 60.105 40.000 0.00 0.00 34.66 2.43
496 751 4.404394 CCCACTTAGGTCCTTGTTTTGTTT 59.596 41.667 0.00 0.00 34.66 2.83
497 752 3.958147 CCCACTTAGGTCCTTGTTTTGTT 59.042 43.478 0.00 0.00 34.66 2.83
498 753 3.562182 CCCACTTAGGTCCTTGTTTTGT 58.438 45.455 0.00 0.00 34.66 2.83
499 754 2.296190 GCCCACTTAGGTCCTTGTTTTG 59.704 50.000 0.00 0.00 34.66 2.44
537 792 4.502604 GGAAGCGCCTGAACACCTTATATA 60.503 45.833 2.29 0.00 0.00 0.86
596 851 0.170784 AACGAAAAACAAACGCGGGT 59.829 45.000 12.47 0.00 0.00 5.28
598 853 1.912110 TGAAACGAAAAACAAACGCGG 59.088 42.857 12.47 0.00 0.00 6.46
632 887 3.356290 CAAGGGGGAGAAATGTAACAGG 58.644 50.000 0.00 0.00 0.00 4.00
634 889 2.802719 GCAAGGGGGAGAAATGTAACA 58.197 47.619 0.00 0.00 0.00 2.41
654 917 3.057019 TGAACCAAGAATTCGAGACACG 58.943 45.455 0.00 0.00 44.09 4.49
715 983 1.797537 GCCACGTGATGCGCTTTTC 60.798 57.895 19.30 3.62 46.11 2.29
740 1008 4.864334 CATGGGAGGGAGCACGCC 62.864 72.222 0.00 0.00 0.00 5.68
757 1025 2.736826 CCCTTCTTCCCTCTCGGCC 61.737 68.421 0.00 0.00 0.00 6.13
871 1139 0.554792 CCAGAGAAGGGGATGGCATT 59.445 55.000 0.00 0.00 0.00 3.56
886 1154 3.188460 GCTCAGTTTTTAACGATGCCAGA 59.812 43.478 0.00 0.00 36.23 3.86
888 1156 3.146066 AGCTCAGTTTTTAACGATGCCA 58.854 40.909 0.00 0.00 36.23 4.92
893 1161 1.454276 CGCGAGCTCAGTTTTTAACGA 59.546 47.619 15.40 0.00 36.23 3.85
1011 1283 1.227645 GCAGATGAGCGCCCATGTA 60.228 57.895 9.93 0.00 0.00 2.29
1056 1328 0.668706 GTGAGCTCTGTCGTGCATGT 60.669 55.000 16.19 0.00 32.26 3.21
1188 1465 0.298707 CAACGATCGACAGGAATGCG 59.701 55.000 24.34 0.00 0.00 4.73
1198 1475 3.561429 GCAAGGTGCAACGATCGA 58.439 55.556 24.34 0.00 44.26 3.59
1296 1577 3.190535 GCGTACCTGATCAAAACCAACAT 59.809 43.478 0.00 0.00 0.00 2.71
1331 1615 0.175760 GCTTGGACGTGCTCTCCATA 59.824 55.000 8.99 0.00 37.65 2.74
1448 1732 7.611467 AGCATGAACAATTTTGATAGTACTCCA 59.389 33.333 0.00 0.00 0.00 3.86
1451 1735 8.798859 AGAGCATGAACAATTTTGATAGTACT 57.201 30.769 0.00 0.00 0.00 2.73
1530 1814 2.522836 ATCCTGCGAGATCATCACAC 57.477 50.000 0.00 0.00 0.00 3.82
1535 1819 0.244994 GCGGTATCCTGCGAGATCAT 59.755 55.000 0.00 0.00 0.00 2.45
1706 2002 0.242825 TTACCTTCAGGACGTGCGAG 59.757 55.000 0.00 1.29 38.94 5.03
1725 2021 4.501071 ACACGGCGTAAGAACTTCATTAT 58.499 39.130 14.22 0.00 43.02 1.28
1727 2023 2.762745 ACACGGCGTAAGAACTTCATT 58.237 42.857 14.22 0.00 43.02 2.57
1729 2025 2.228138 AACACGGCGTAAGAACTTCA 57.772 45.000 14.22 0.00 43.02 3.02
1730 2026 3.597377 AAAACACGGCGTAAGAACTTC 57.403 42.857 14.22 0.00 43.02 3.01
1731 2027 3.624410 AGAAAAACACGGCGTAAGAACTT 59.376 39.130 14.22 1.25 43.02 2.66
1732 2028 3.200483 AGAAAAACACGGCGTAAGAACT 58.800 40.909 14.22 5.61 43.02 3.01
1733 2029 3.538780 GAGAAAAACACGGCGTAAGAAC 58.461 45.455 14.22 3.13 43.02 3.01
1734 2030 2.545106 GGAGAAAAACACGGCGTAAGAA 59.455 45.455 14.22 0.00 43.02 2.52
1735 2031 2.137523 GGAGAAAAACACGGCGTAAGA 58.862 47.619 14.22 0.00 43.02 2.10
1737 2033 0.860533 CGGAGAAAAACACGGCGTAA 59.139 50.000 14.22 0.00 0.00 3.18
1738 2034 0.249405 ACGGAGAAAAACACGGCGTA 60.249 50.000 14.22 0.00 0.00 4.42
1739 2035 1.522130 ACGGAGAAAAACACGGCGT 60.522 52.632 6.77 6.77 0.00 5.68
1740 2036 1.083015 CACGGAGAAAAACACGGCG 60.083 57.895 4.80 4.80 0.00 6.46
1741 2037 1.281656 CCACGGAGAAAAACACGGC 59.718 57.895 0.00 0.00 0.00 5.68
1742 2038 0.584876 GACCACGGAGAAAAACACGG 59.415 55.000 0.00 0.00 0.00 4.94
1743 2039 1.578583 AGACCACGGAGAAAAACACG 58.421 50.000 0.00 0.00 0.00 4.49
1744 2040 4.348656 GAAAAGACCACGGAGAAAAACAC 58.651 43.478 0.00 0.00 0.00 3.32
1745 2041 3.064271 CGAAAAGACCACGGAGAAAAACA 59.936 43.478 0.00 0.00 0.00 2.83
1748 2044 3.182341 TCGAAAAGACCACGGAGAAAA 57.818 42.857 0.00 0.00 0.00 2.29
1755 2051 2.679355 TGCATTTCGAAAAGACCACG 57.321 45.000 15.66 0.00 0.00 4.94
1758 2054 3.501950 GACCATGCATTTCGAAAAGACC 58.498 45.455 15.66 4.30 0.00 3.85
1806 2103 6.039605 TGACTCAAAATGAAGCATCAAGTGAA 59.960 34.615 0.00 0.00 39.49 3.18
1807 2104 5.532032 TGACTCAAAATGAAGCATCAAGTGA 59.468 36.000 0.00 0.00 39.49 3.41
1808 2105 5.765176 TGACTCAAAATGAAGCATCAAGTG 58.235 37.500 0.00 0.00 39.49 3.16
1809 2106 6.395426 TTGACTCAAAATGAAGCATCAAGT 57.605 33.333 0.00 0.00 39.49 3.16
1810 2107 8.975410 TTATTGACTCAAAATGAAGCATCAAG 57.025 30.769 0.00 0.00 39.49 3.02
1811 2108 9.761504 TTTTATTGACTCAAAATGAAGCATCAA 57.238 25.926 0.00 0.00 39.49 2.57
1812 2109 9.932207 ATTTTATTGACTCAAAATGAAGCATCA 57.068 25.926 0.00 0.00 40.57 3.07
1814 2111 9.374838 GGATTTTATTGACTCAAAATGAAGCAT 57.625 29.630 0.00 0.00 35.14 3.79
1815 2112 8.366401 TGGATTTTATTGACTCAAAATGAAGCA 58.634 29.630 0.00 0.00 35.14 3.91
1816 2113 8.650714 GTGGATTTTATTGACTCAAAATGAAGC 58.349 33.333 0.00 0.00 35.14 3.86
1817 2114 9.695526 TGTGGATTTTATTGACTCAAAATGAAG 57.304 29.630 0.00 0.00 35.14 3.02
1818 2115 9.474920 GTGTGGATTTTATTGACTCAAAATGAA 57.525 29.630 0.00 0.00 35.14 2.57
1819 2116 8.087750 GGTGTGGATTTTATTGACTCAAAATGA 58.912 33.333 0.00 0.00 35.14 2.57
1820 2117 8.090214 AGGTGTGGATTTTATTGACTCAAAATG 58.910 33.333 0.00 0.00 35.14 2.32
1821 2118 8.193953 AGGTGTGGATTTTATTGACTCAAAAT 57.806 30.769 0.00 0.00 37.12 1.82
1822 2119 7.595819 AGGTGTGGATTTTATTGACTCAAAA 57.404 32.000 0.00 0.00 0.00 2.44
1823 2120 7.069331 ACAAGGTGTGGATTTTATTGACTCAAA 59.931 33.333 0.00 0.00 0.00 2.69
1824 2121 6.549364 ACAAGGTGTGGATTTTATTGACTCAA 59.451 34.615 0.00 0.00 0.00 3.02
1825 2122 6.068010 ACAAGGTGTGGATTTTATTGACTCA 58.932 36.000 0.00 0.00 0.00 3.41
1826 2123 6.206634 TGACAAGGTGTGGATTTTATTGACTC 59.793 38.462 0.00 0.00 0.00 3.36
1827 2124 6.068010 TGACAAGGTGTGGATTTTATTGACT 58.932 36.000 0.00 0.00 0.00 3.41
1828 2125 6.325919 TGACAAGGTGTGGATTTTATTGAC 57.674 37.500 0.00 0.00 0.00 3.18
1829 2126 6.968263 TTGACAAGGTGTGGATTTTATTGA 57.032 33.333 0.00 0.00 0.00 2.57
1830 2127 7.432869 TCTTTGACAAGGTGTGGATTTTATTG 58.567 34.615 0.00 0.00 0.00 1.90
1831 2128 7.595819 TCTTTGACAAGGTGTGGATTTTATT 57.404 32.000 0.00 0.00 0.00 1.40
1832 2129 7.595819 TTCTTTGACAAGGTGTGGATTTTAT 57.404 32.000 0.00 0.00 0.00 1.40
1833 2130 7.411486 TTTCTTTGACAAGGTGTGGATTTTA 57.589 32.000 0.00 0.00 0.00 1.52
1834 2131 5.930837 TTCTTTGACAAGGTGTGGATTTT 57.069 34.783 0.00 0.00 0.00 1.82
1835 2132 5.930837 TTTCTTTGACAAGGTGTGGATTT 57.069 34.783 0.00 0.00 0.00 2.17
1836 2133 5.930837 TTTTCTTTGACAAGGTGTGGATT 57.069 34.783 0.00 0.00 0.00 3.01
1837 2134 5.930837 TTTTTCTTTGACAAGGTGTGGAT 57.069 34.783 0.00 0.00 0.00 3.41
1838 2135 5.659463 CATTTTTCTTTGACAAGGTGTGGA 58.341 37.500 0.00 0.00 0.00 4.02
1839 2136 4.270808 GCATTTTTCTTTGACAAGGTGTGG 59.729 41.667 0.00 0.00 0.00 4.17
1840 2137 4.869297 TGCATTTTTCTTTGACAAGGTGTG 59.131 37.500 0.00 0.00 0.00 3.82
1841 2138 5.083533 TGCATTTTTCTTTGACAAGGTGT 57.916 34.783 0.00 0.00 0.00 4.16
1842 2139 5.987347 AGATGCATTTTTCTTTGACAAGGTG 59.013 36.000 0.00 0.00 0.00 4.00
1843 2140 6.165700 AGATGCATTTTTCTTTGACAAGGT 57.834 33.333 0.00 0.00 0.00 3.50
1844 2141 6.565247 GCAAGATGCATTTTTCTTTGACAAGG 60.565 38.462 0.00 0.00 44.26 3.61
1845 2142 6.360329 GCAAGATGCATTTTTCTTTGACAAG 58.640 36.000 0.00 0.00 44.26 3.16
1846 2143 5.050904 CGCAAGATGCATTTTTCTTTGACAA 60.051 36.000 0.00 0.00 45.36 3.18
1847 2144 4.445052 CGCAAGATGCATTTTTCTTTGACA 59.555 37.500 0.00 0.00 45.36 3.58
1848 2145 4.445385 ACGCAAGATGCATTTTTCTTTGAC 59.555 37.500 0.00 0.00 45.36 3.18
1849 2146 4.619973 ACGCAAGATGCATTTTTCTTTGA 58.380 34.783 0.00 0.00 45.36 2.69
1850 2147 4.977741 ACGCAAGATGCATTTTTCTTTG 57.022 36.364 0.00 0.00 45.36 2.77
1851 2148 5.333046 CAACGCAAGATGCATTTTTCTTT 57.667 34.783 0.00 0.00 45.36 2.52
1852 2149 4.977741 CAACGCAAGATGCATTTTTCTT 57.022 36.364 0.00 0.00 45.36 2.52
1862 2159 5.601582 CAAACAATAAAGCAACGCAAGATG 58.398 37.500 0.00 0.00 43.82 2.90
1863 2160 4.150451 GCAAACAATAAAGCAACGCAAGAT 59.850 37.500 0.00 0.00 43.62 2.40
1864 2161 3.489047 GCAAACAATAAAGCAACGCAAGA 59.511 39.130 0.00 0.00 43.62 3.02
1865 2162 9.993261 GTTCAGCAAACAATAAAGCAACGCAAG 62.993 40.741 0.00 0.00 39.88 4.01
1866 2163 3.244814 CAGCAAACAATAAAGCAACGCAA 59.755 39.130 0.00 0.00 0.00 4.85
1867 2164 2.793790 CAGCAAACAATAAAGCAACGCA 59.206 40.909 0.00 0.00 0.00 5.24
1868 2165 3.049206 TCAGCAAACAATAAAGCAACGC 58.951 40.909 0.00 0.00 0.00 4.84
1869 2166 4.373914 CGTTCAGCAAACAATAAAGCAACG 60.374 41.667 3.34 0.00 37.77 4.10
1870 2167 4.502645 ACGTTCAGCAAACAATAAAGCAAC 59.497 37.500 3.34 0.00 37.77 4.17
1871 2168 4.502282 CACGTTCAGCAAACAATAAAGCAA 59.498 37.500 0.00 0.00 37.77 3.91
1872 2169 4.041049 CACGTTCAGCAAACAATAAAGCA 58.959 39.130 0.00 0.00 37.77 3.91
1873 2170 3.121362 GCACGTTCAGCAAACAATAAAGC 60.121 43.478 0.00 0.00 37.77 3.51
1874 2171 4.041049 TGCACGTTCAGCAAACAATAAAG 58.959 39.130 0.00 0.00 39.39 1.85
1887 2184 2.666190 GCTCAGCCTGCACGTTCA 60.666 61.111 0.00 0.00 0.00 3.18
2061 2359 5.661056 TTCAGGAACAGAGGTAGTACATG 57.339 43.478 2.06 0.00 0.00 3.21
2128 2427 5.103000 GGGATCGTCTAATTATCATGTCCG 58.897 45.833 0.00 0.00 0.00 4.79
2129 2428 6.287589 AGGGATCGTCTAATTATCATGTCC 57.712 41.667 0.00 0.00 0.00 4.02
2130 2429 7.155328 ACAAGGGATCGTCTAATTATCATGTC 58.845 38.462 0.00 0.00 0.00 3.06
2172 2476 4.223320 TCGCAAAGAACACAAATCCTTC 57.777 40.909 0.00 0.00 0.00 3.46
2231 2608 0.687920 TCGGCAAGTACCATGACCAA 59.312 50.000 0.00 0.00 0.00 3.67
2232 2609 0.687920 TTCGGCAAGTACCATGACCA 59.312 50.000 0.00 0.00 0.00 4.02
2233 2610 1.816074 TTTCGGCAAGTACCATGACC 58.184 50.000 0.00 1.39 0.00 4.02
2234 2611 2.161609 CCTTTTCGGCAAGTACCATGAC 59.838 50.000 0.00 0.00 0.00 3.06
2236 2613 2.159382 ACCTTTTCGGCAAGTACCATG 58.841 47.619 0.00 0.00 35.61 3.66
2237 2614 2.579410 ACCTTTTCGGCAAGTACCAT 57.421 45.000 0.00 0.00 35.61 3.55
2238 2615 2.223745 GAACCTTTTCGGCAAGTACCA 58.776 47.619 0.00 0.00 35.61 3.25
2239 2616 1.538512 GGAACCTTTTCGGCAAGTACC 59.461 52.381 0.00 0.00 35.61 3.34
2240 2617 2.983402 GGAACCTTTTCGGCAAGTAC 57.017 50.000 0.00 0.00 35.61 2.73
2255 2632 2.626266 AGTTTTGTGATTTCCGGGGAAC 59.374 45.455 0.00 0.00 33.41 3.62
2256 2633 2.952116 AGTTTTGTGATTTCCGGGGAA 58.048 42.857 0.00 0.00 0.00 3.97
2257 2634 2.668144 AGTTTTGTGATTTCCGGGGA 57.332 45.000 0.00 0.00 0.00 4.81
2258 2635 3.418047 AGTAGTTTTGTGATTTCCGGGG 58.582 45.455 0.00 0.00 0.00 5.73
2259 2636 5.447624 AAAGTAGTTTTGTGATTTCCGGG 57.552 39.130 0.00 0.00 0.00 5.73
2260 2637 6.075280 CGTAAAGTAGTTTTGTGATTTCCGG 58.925 40.000 0.00 0.00 0.00 5.14
2261 2638 6.652245 ACGTAAAGTAGTTTTGTGATTTCCG 58.348 36.000 0.00 0.00 0.00 4.30
2262 2639 7.632721 TGACGTAAAGTAGTTTTGTGATTTCC 58.367 34.615 0.00 0.00 0.00 3.13
2265 2642 9.263538 TGTATGACGTAAAGTAGTTTTGTGATT 57.736 29.630 0.00 0.00 0.00 2.57
2266 2643 8.706035 GTGTATGACGTAAAGTAGTTTTGTGAT 58.294 33.333 0.00 3.61 0.00 3.06
2267 2644 7.705752 TGTGTATGACGTAAAGTAGTTTTGTGA 59.294 33.333 0.00 0.00 0.00 3.58
2268 2645 7.843482 TGTGTATGACGTAAAGTAGTTTTGTG 58.157 34.615 0.00 0.00 0.00 3.33
2269 2646 8.422973 TTGTGTATGACGTAAAGTAGTTTTGT 57.577 30.769 0.00 0.81 0.00 2.83
2270 2647 9.150653 GTTTGTGTATGACGTAAAGTAGTTTTG 57.849 33.333 0.00 0.00 0.00 2.44
2271 2648 8.881743 TGTTTGTGTATGACGTAAAGTAGTTTT 58.118 29.630 0.00 0.00 0.00 2.43
2272 2649 8.422973 TGTTTGTGTATGACGTAAAGTAGTTT 57.577 30.769 0.37 0.37 0.00 2.66
2273 2650 8.597662 ATGTTTGTGTATGACGTAAAGTAGTT 57.402 30.769 0.00 0.00 0.00 2.24
2274 2651 9.865321 ATATGTTTGTGTATGACGTAAAGTAGT 57.135 29.630 0.00 0.00 0.00 2.73
2282 2659 9.431887 ACTAGAAAATATGTTTGTGTATGACGT 57.568 29.630 0.00 0.00 0.00 4.34
2303 2680 9.161572 ACAGAGGAAGTAGATGATAGTACTAGA 57.838 37.037 8.85 0.00 0.00 2.43
2304 2681 9.431887 GACAGAGGAAGTAGATGATAGTACTAG 57.568 40.741 8.85 0.00 0.00 2.57
2305 2682 8.377034 GGACAGAGGAAGTAGATGATAGTACTA 58.623 40.741 4.77 4.77 0.00 1.82
2306 2683 7.228590 GGACAGAGGAAGTAGATGATAGTACT 58.771 42.308 0.00 0.00 0.00 2.73
2307 2684 6.431852 GGGACAGAGGAAGTAGATGATAGTAC 59.568 46.154 0.00 0.00 0.00 2.73
2308 2685 6.102762 TGGGACAGAGGAAGTAGATGATAGTA 59.897 42.308 0.00 0.00 0.00 1.82
2309 2686 5.103473 TGGGACAGAGGAAGTAGATGATAGT 60.103 44.000 0.00 0.00 0.00 2.12
2310 2687 5.389520 TGGGACAGAGGAAGTAGATGATAG 58.610 45.833 0.00 0.00 0.00 2.08
2311 2688 5.403558 TGGGACAGAGGAAGTAGATGATA 57.596 43.478 0.00 0.00 0.00 2.15
2312 2689 4.271807 TGGGACAGAGGAAGTAGATGAT 57.728 45.455 0.00 0.00 0.00 2.45
2313 2690 3.757947 TGGGACAGAGGAAGTAGATGA 57.242 47.619 0.00 0.00 0.00 2.92
2314 2691 4.826274 TTTGGGACAGAGGAAGTAGATG 57.174 45.455 0.00 0.00 42.39 2.90
2315 2692 5.251700 ACATTTTGGGACAGAGGAAGTAGAT 59.748 40.000 0.00 0.00 42.39 1.98
2316 2693 4.597507 ACATTTTGGGACAGAGGAAGTAGA 59.402 41.667 0.00 0.00 42.39 2.59
2317 2694 4.911390 ACATTTTGGGACAGAGGAAGTAG 58.089 43.478 0.00 0.00 42.39 2.57
2318 2695 4.993705 ACATTTTGGGACAGAGGAAGTA 57.006 40.909 0.00 0.00 42.39 2.24
2319 2696 3.884037 ACATTTTGGGACAGAGGAAGT 57.116 42.857 0.00 0.00 42.39 3.01
2320 2697 5.560724 TCTTACATTTTGGGACAGAGGAAG 58.439 41.667 0.00 0.00 42.39 3.46
2321 2698 5.576563 TCTTACATTTTGGGACAGAGGAA 57.423 39.130 0.00 0.00 42.39 3.36
2322 2699 5.313712 GTTCTTACATTTTGGGACAGAGGA 58.686 41.667 0.00 0.00 42.39 3.71
2323 2700 4.154195 CGTTCTTACATTTTGGGACAGAGG 59.846 45.833 0.00 0.00 42.39 3.69
2324 2701 4.755123 ACGTTCTTACATTTTGGGACAGAG 59.245 41.667 0.00 0.00 42.39 3.35
2325 2702 4.710324 ACGTTCTTACATTTTGGGACAGA 58.290 39.130 0.00 0.00 42.39 3.41
2326 2703 5.432885 AACGTTCTTACATTTTGGGACAG 57.567 39.130 0.00 0.00 42.39 3.51
2327 2704 5.838531 AAACGTTCTTACATTTTGGGACA 57.161 34.783 0.00 0.00 0.00 4.02
2328 2705 8.533965 GTTAAAAACGTTCTTACATTTTGGGAC 58.466 33.333 0.00 0.00 30.80 4.46
2329 2706 8.248945 TGTTAAAAACGTTCTTACATTTTGGGA 58.751 29.630 0.00 0.00 30.80 4.37
2330 2707 8.322428 GTGTTAAAAACGTTCTTACATTTTGGG 58.678 33.333 0.00 0.00 30.80 4.12
2331 2708 9.078753 AGTGTTAAAAACGTTCTTACATTTTGG 57.921 29.630 0.00 0.00 30.80 3.28
2337 2714 9.096160 TGATGTAGTGTTAAAAACGTTCTTACA 57.904 29.630 0.00 1.27 0.00 2.41
2338 2715 9.577003 CTGATGTAGTGTTAAAAACGTTCTTAC 57.423 33.333 0.00 0.00 0.00 2.34
2339 2716 9.316730 ACTGATGTAGTGTTAAAAACGTTCTTA 57.683 29.630 0.00 0.00 38.49 2.10
2340 2717 8.205131 ACTGATGTAGTGTTAAAAACGTTCTT 57.795 30.769 0.00 0.00 38.49 2.52
2341 2718 7.781548 ACTGATGTAGTGTTAAAAACGTTCT 57.218 32.000 0.00 0.00 38.49 3.01
2355 2732 5.583061 TGAACGTTTTTGACACTGATGTAGT 59.417 36.000 0.46 0.00 39.95 2.73
2356 2733 6.043327 TGAACGTTTTTGACACTGATGTAG 57.957 37.500 0.46 0.00 39.95 2.74
2357 2734 6.612247 ATGAACGTTTTTGACACTGATGTA 57.388 33.333 0.46 0.00 39.95 2.29
2358 2735 4.955925 TGAACGTTTTTGACACTGATGT 57.044 36.364 0.46 0.00 43.71 3.06
2359 2736 9.773328 AATATATGAACGTTTTTGACACTGATG 57.227 29.630 0.46 0.00 0.00 3.07
2364 2741 9.445786 CCCATAATATATGAACGTTTTTGACAC 57.554 33.333 0.46 0.00 0.00 3.67
2365 2742 9.397280 TCCCATAATATATGAACGTTTTTGACA 57.603 29.630 0.46 0.00 0.00 3.58
2366 2743 9.659830 GTCCCATAATATATGAACGTTTTTGAC 57.340 33.333 0.46 0.00 0.00 3.18
2367 2744 9.397280 TGTCCCATAATATATGAACGTTTTTGA 57.603 29.630 0.46 0.00 0.00 2.69
2368 2745 9.663904 CTGTCCCATAATATATGAACGTTTTTG 57.336 33.333 0.46 0.00 0.00 2.44
2369 2746 9.621629 TCTGTCCCATAATATATGAACGTTTTT 57.378 29.630 0.46 0.00 0.00 1.94
2370 2747 9.273016 CTCTGTCCCATAATATATGAACGTTTT 57.727 33.333 0.46 0.00 0.00 2.43
2371 2748 7.878127 CCTCTGTCCCATAATATATGAACGTTT 59.122 37.037 0.46 0.00 0.00 3.60
2372 2749 7.234782 TCCTCTGTCCCATAATATATGAACGTT 59.765 37.037 0.00 0.00 0.00 3.99
2373 2750 6.724441 TCCTCTGTCCCATAATATATGAACGT 59.276 38.462 0.00 0.00 0.00 3.99
2374 2751 7.170393 TCCTCTGTCCCATAATATATGAACG 57.830 40.000 0.00 0.00 0.00 3.95
2375 2752 8.598041 ACTTCCTCTGTCCCATAATATATGAAC 58.402 37.037 0.00 0.00 0.00 3.18
2376 2753 8.742125 ACTTCCTCTGTCCCATAATATATGAA 57.258 34.615 0.00 0.00 0.00 2.57
2377 2754 9.837681 TTACTTCCTCTGTCCCATAATATATGA 57.162 33.333 0.00 0.00 0.00 2.15
2438 2815 5.613812 CGCGAACATATTTTGTAGTCACAA 58.386 37.500 0.00 0.00 42.93 3.33
2439 2816 4.434989 GCGCGAACATATTTTGTAGTCACA 60.435 41.667 12.10 0.00 37.68 3.58
2440 2817 4.019867 GCGCGAACATATTTTGTAGTCAC 58.980 43.478 12.10 0.00 37.68 3.67
2441 2818 3.680458 TGCGCGAACATATTTTGTAGTCA 59.320 39.130 12.10 0.00 37.68 3.41
2442 2819 4.253352 TGCGCGAACATATTTTGTAGTC 57.747 40.909 12.10 0.00 37.68 2.59
2443 2820 4.875544 ATGCGCGAACATATTTTGTAGT 57.124 36.364 12.10 0.00 37.68 2.73
2444 2821 8.432359 TCTATAATGCGCGAACATATTTTGTAG 58.568 33.333 12.10 1.47 37.68 2.74
2445 2822 8.300495 TCTATAATGCGCGAACATATTTTGTA 57.700 30.769 12.10 0.00 37.68 2.41
2446 2823 7.184800 TCTATAATGCGCGAACATATTTTGT 57.815 32.000 12.10 0.00 41.53 2.83
2447 2824 8.487668 TTTCTATAATGCGCGAACATATTTTG 57.512 30.769 12.10 0.00 0.00 2.44
2448 2825 8.953990 GTTTTCTATAATGCGCGAACATATTTT 58.046 29.630 12.10 0.00 0.00 1.82
2449 2826 8.126074 TGTTTTCTATAATGCGCGAACATATTT 58.874 29.630 12.10 0.00 0.00 1.40
2450 2827 7.635423 TGTTTTCTATAATGCGCGAACATATT 58.365 30.769 12.10 4.27 0.00 1.28
2451 2828 7.184800 TGTTTTCTATAATGCGCGAACATAT 57.815 32.000 12.10 4.71 0.00 1.78
2452 2829 6.591313 TGTTTTCTATAATGCGCGAACATA 57.409 33.333 12.10 0.00 0.00 2.29
2453 2830 5.478233 TGTTTTCTATAATGCGCGAACAT 57.522 34.783 12.10 0.63 0.00 2.71
2454 2831 4.930463 TGTTTTCTATAATGCGCGAACA 57.070 36.364 12.10 4.18 0.00 3.18
2455 2832 5.963004 TGATTGTTTTCTATAATGCGCGAAC 59.037 36.000 12.10 1.00 0.00 3.95
2456 2833 6.112994 TGATTGTTTTCTATAATGCGCGAA 57.887 33.333 12.10 0.00 0.00 4.70
2457 2834 5.726729 TGATTGTTTTCTATAATGCGCGA 57.273 34.783 12.10 0.00 0.00 5.87
2458 2835 5.909054 ACATGATTGTTTTCTATAATGCGCG 59.091 36.000 0.00 0.00 30.46 6.86
2459 2836 8.955061 ATACATGATTGTTTTCTATAATGCGC 57.045 30.769 0.00 0.00 37.28 6.09
2471 2848 9.643693 GGAATGTTCTGAAATACATGATTGTTT 57.356 29.630 0.00 0.00 37.28 2.83
2472 2849 9.028284 AGGAATGTTCTGAAATACATGATTGTT 57.972 29.630 0.00 0.00 37.28 2.83
2473 2850 8.464404 CAGGAATGTTCTGAAATACATGATTGT 58.536 33.333 0.00 0.00 35.29 2.71
2474 2851 8.464404 ACAGGAATGTTCTGAAATACATGATTG 58.536 33.333 0.00 0.00 35.29 2.67
2475 2852 8.585471 ACAGGAATGTTCTGAAATACATGATT 57.415 30.769 0.00 0.00 35.29 2.57
2476 2853 9.857656 ATACAGGAATGTTCTGAAATACATGAT 57.142 29.630 0.00 0.00 35.29 2.45
2491 2868 9.797642 TGAGCATTTCATTATATACAGGAATGT 57.202 29.630 12.75 0.00 33.27 2.71
2507 2884 9.932207 ACATTTTCTGAAAATATGAGCATTTCA 57.068 25.926 23.64 0.00 38.97 2.69
2511 2888 9.715121 ACAAACATTTTCTGAAAATATGAGCAT 57.285 25.926 23.64 7.80 38.97 3.79
2512 2889 8.980610 CACAAACATTTTCTGAAAATATGAGCA 58.019 29.630 23.64 0.00 38.97 4.26
2513 2890 8.981647 ACACAAACATTTTCTGAAAATATGAGC 58.018 29.630 23.64 0.00 38.97 4.26
2515 2892 9.814899 ACACACAAACATTTTCTGAAAATATGA 57.185 25.926 23.64 1.35 38.97 2.15
2519 2896 8.997323 TGAAACACACAAACATTTTCTGAAAAT 58.003 25.926 19.79 19.79 41.57 1.82
2520 2897 8.370493 TGAAACACACAAACATTTTCTGAAAA 57.630 26.923 17.04 17.04 34.41 2.29
2521 2898 7.953158 TGAAACACACAAACATTTTCTGAAA 57.047 28.000 0.00 0.00 0.00 2.69
2522 2899 9.645059 TTATGAAACACACAAACATTTTCTGAA 57.355 25.926 0.00 0.00 0.00 3.02
2523 2900 9.645059 TTTATGAAACACACAAACATTTTCTGA 57.355 25.926 0.00 0.00 0.00 3.27
2535 2912 9.921637 AGAAGAAAACTTTTTATGAAACACACA 57.078 25.926 0.00 0.00 0.00 3.72
2537 2914 9.921637 ACAGAAGAAAACTTTTTATGAAACACA 57.078 25.926 0.00 0.00 0.00 3.72
2595 2972 3.080300 TGAAAAACCTGTGTGGACACT 57.920 42.857 11.09 0.00 46.55 3.55
2596 2973 3.859411 TTGAAAAACCTGTGTGGACAC 57.141 42.857 2.81 2.81 46.59 3.67
2597 2974 4.873746 TTTTGAAAAACCTGTGTGGACA 57.126 36.364 0.00 0.00 39.71 4.02
2598 2975 6.478673 CCTATTTTTGAAAAACCTGTGTGGAC 59.521 38.462 5.08 0.00 39.71 4.02
2600 2977 5.757808 CCCTATTTTTGAAAAACCTGTGTGG 59.242 40.000 5.08 1.38 42.93 4.17
2601 2978 6.578023 TCCCTATTTTTGAAAAACCTGTGTG 58.422 36.000 5.08 0.00 0.00 3.82
2602 2979 6.800072 TCCCTATTTTTGAAAAACCTGTGT 57.200 33.333 5.08 0.00 0.00 3.72
2603 2980 7.272244 ACTTCCCTATTTTTGAAAAACCTGTG 58.728 34.615 5.08 0.00 0.00 3.66
2604 2981 7.432148 ACTTCCCTATTTTTGAAAAACCTGT 57.568 32.000 5.08 0.00 0.00 4.00
2605 2982 8.417884 TGTACTTCCCTATTTTTGAAAAACCTG 58.582 33.333 5.08 0.00 0.00 4.00
2606 2983 8.541899 TGTACTTCCCTATTTTTGAAAAACCT 57.458 30.769 5.08 0.00 0.00 3.50
2607 2984 9.602568 TTTGTACTTCCCTATTTTTGAAAAACC 57.397 29.630 5.08 0.00 0.00 3.27
2614 2991 9.476202 CCTTTTCTTTGTACTTCCCTATTTTTG 57.524 33.333 0.00 0.00 0.00 2.44
2616 2993 7.289084 TGCCTTTTCTTTGTACTTCCCTATTTT 59.711 33.333 0.00 0.00 0.00 1.82
2617 2994 6.780522 TGCCTTTTCTTTGTACTTCCCTATTT 59.219 34.615 0.00 0.00 0.00 1.40
2619 2996 5.887754 TGCCTTTTCTTTGTACTTCCCTAT 58.112 37.500 0.00 0.00 0.00 2.57
2620 2997 5.313280 TGCCTTTTCTTTGTACTTCCCTA 57.687 39.130 0.00 0.00 0.00 3.53
2621 2998 4.178956 TGCCTTTTCTTTGTACTTCCCT 57.821 40.909 0.00 0.00 0.00 4.20
2623 3000 5.257082 TGTTGCCTTTTCTTTGTACTTCC 57.743 39.130 0.00 0.00 0.00 3.46
2624 3001 7.918562 TGTATTGTTGCCTTTTCTTTGTACTTC 59.081 33.333 0.00 0.00 0.00 3.01
2625 3002 7.777095 TGTATTGTTGCCTTTTCTTTGTACTT 58.223 30.769 0.00 0.00 0.00 2.24
2627 3004 7.995463 TTGTATTGTTGCCTTTTCTTTGTAC 57.005 32.000 0.00 0.00 0.00 2.90
2629 3006 9.777297 ATATTTGTATTGTTGCCTTTTCTTTGT 57.223 25.926 0.00 0.00 0.00 2.83
2631 3008 9.995003 TCATATTTGTATTGTTGCCTTTTCTTT 57.005 25.926 0.00 0.00 0.00 2.52
2633 3010 9.023962 TCTCATATTTGTATTGTTGCCTTTTCT 57.976 29.630 0.00 0.00 0.00 2.52
2634 3011 9.807649 ATCTCATATTTGTATTGTTGCCTTTTC 57.192 29.630 0.00 0.00 0.00 2.29
2635 3012 9.590451 CATCTCATATTTGTATTGTTGCCTTTT 57.410 29.630 0.00 0.00 0.00 2.27
2637 3014 8.523915 TCATCTCATATTTGTATTGTTGCCTT 57.476 30.769 0.00 0.00 0.00 4.35
2639 3016 9.585099 TTTTCATCTCATATTTGTATTGTTGCC 57.415 29.630 0.00 0.00 0.00 4.52
2759 3220 7.334171 CAGTGTAATTGGAGTGTTCATCATGTA 59.666 37.037 0.00 0.00 0.00 2.29
2763 3224 5.469760 CACAGTGTAATTGGAGTGTTCATCA 59.530 40.000 0.00 0.00 0.00 3.07
2767 3228 8.718102 ATATACACAGTGTAATTGGAGTGTTC 57.282 34.615 17.43 0.00 40.33 3.18
2812 3273 5.215160 GCATGCGGAAATCACCTTATTTAG 58.785 41.667 0.00 0.00 0.00 1.85
2813 3274 4.642437 TGCATGCGGAAATCACCTTATTTA 59.358 37.500 14.09 0.00 0.00 1.40
2814 3275 3.446873 TGCATGCGGAAATCACCTTATTT 59.553 39.130 14.09 0.00 0.00 1.40
2815 3276 3.023119 TGCATGCGGAAATCACCTTATT 58.977 40.909 14.09 0.00 0.00 1.40
2816 3277 2.653726 TGCATGCGGAAATCACCTTAT 58.346 42.857 14.09 0.00 0.00 1.73
2817 3278 2.121291 TGCATGCGGAAATCACCTTA 57.879 45.000 14.09 0.00 0.00 2.69
2818 3279 1.255882 TTGCATGCGGAAATCACCTT 58.744 45.000 14.09 0.00 0.00 3.50
2819 3280 1.255882 TTTGCATGCGGAAATCACCT 58.744 45.000 14.09 0.00 0.00 4.00
2820 3281 1.726248 GTTTTGCATGCGGAAATCACC 59.274 47.619 18.28 5.89 31.98 4.02
2821 3282 2.676076 AGTTTTGCATGCGGAAATCAC 58.324 42.857 18.28 8.96 31.98 3.06
2822 3283 3.383620 AAGTTTTGCATGCGGAAATCA 57.616 38.095 18.28 0.00 31.98 2.57
2823 3284 6.090628 TCAAATAAGTTTTGCATGCGGAAATC 59.909 34.615 18.28 11.28 31.98 2.17
2824 3285 5.931146 TCAAATAAGTTTTGCATGCGGAAAT 59.069 32.000 18.28 10.30 31.98 2.17
2825 3286 5.176590 GTCAAATAAGTTTTGCATGCGGAAA 59.823 36.000 14.09 13.56 0.00 3.13
2826 3287 4.683781 GTCAAATAAGTTTTGCATGCGGAA 59.316 37.500 14.09 7.74 0.00 4.30
2827 3288 4.233789 GTCAAATAAGTTTTGCATGCGGA 58.766 39.130 14.09 0.63 0.00 5.54
2828 3289 3.986572 TGTCAAATAAGTTTTGCATGCGG 59.013 39.130 14.09 0.00 0.00 5.69
2829 3290 5.573296 TTGTCAAATAAGTTTTGCATGCG 57.427 34.783 14.09 0.00 0.00 4.73
2830 3291 6.303733 GCAATTGTCAAATAAGTTTTGCATGC 59.696 34.615 11.82 11.82 0.00 4.06
2831 3292 7.353497 TGCAATTGTCAAATAAGTTTTGCATG 58.647 30.769 13.72 0.00 36.87 4.06
2832 3293 7.493743 TGCAATTGTCAAATAAGTTTTGCAT 57.506 28.000 13.72 0.00 36.87 3.96
2833 3294 6.915544 TGCAATTGTCAAATAAGTTTTGCA 57.084 29.167 13.72 13.72 39.05 4.08
2834 3295 7.354257 ACATGCAATTGTCAAATAAGTTTTGC 58.646 30.769 7.40 9.74 0.00 3.68
2835 3296 9.372541 GAACATGCAATTGTCAAATAAGTTTTG 57.627 29.630 7.40 1.16 0.00 2.44
2836 3297 9.107177 TGAACATGCAATTGTCAAATAAGTTTT 57.893 25.926 7.40 0.00 0.00 2.43
2837 3298 8.550376 GTGAACATGCAATTGTCAAATAAGTTT 58.450 29.630 7.40 0.00 0.00 2.66
2838 3299 7.171337 GGTGAACATGCAATTGTCAAATAAGTT 59.829 33.333 7.40 7.27 0.00 2.66
2839 3300 6.646240 GGTGAACATGCAATTGTCAAATAAGT 59.354 34.615 7.40 0.07 0.00 2.24
2840 3301 6.091169 GGGTGAACATGCAATTGTCAAATAAG 59.909 38.462 7.40 0.00 0.00 1.73
2841 3302 5.931146 GGGTGAACATGCAATTGTCAAATAA 59.069 36.000 7.40 0.00 0.00 1.40
2842 3303 5.011431 TGGGTGAACATGCAATTGTCAAATA 59.989 36.000 7.40 0.00 0.00 1.40
2843 3304 4.202336 TGGGTGAACATGCAATTGTCAAAT 60.202 37.500 7.40 0.00 0.00 2.32
2844 3305 3.133542 TGGGTGAACATGCAATTGTCAAA 59.866 39.130 7.40 0.00 0.00 2.69
2845 3306 2.697229 TGGGTGAACATGCAATTGTCAA 59.303 40.909 7.40 0.00 0.00 3.18
2846 3307 2.296752 CTGGGTGAACATGCAATTGTCA 59.703 45.455 7.40 6.18 0.00 3.58
2847 3308 2.927871 GCTGGGTGAACATGCAATTGTC 60.928 50.000 7.40 0.07 0.00 3.18
2848 3309 1.001181 GCTGGGTGAACATGCAATTGT 59.999 47.619 7.40 0.00 0.00 2.71
2849 3310 1.673626 GGCTGGGTGAACATGCAATTG 60.674 52.381 0.00 0.00 0.00 2.32
2850 3311 0.609662 GGCTGGGTGAACATGCAATT 59.390 50.000 0.00 0.00 0.00 2.32
2851 3312 1.259840 GGGCTGGGTGAACATGCAAT 61.260 55.000 0.00 0.00 0.00 3.56
2852 3313 1.907807 GGGCTGGGTGAACATGCAA 60.908 57.895 0.00 0.00 0.00 4.08
2853 3314 2.283101 GGGCTGGGTGAACATGCA 60.283 61.111 0.00 0.00 0.00 3.96
2854 3315 3.070576 GGGGCTGGGTGAACATGC 61.071 66.667 0.00 0.00 0.00 4.06
2855 3316 2.751436 CGGGGCTGGGTGAACATG 60.751 66.667 0.00 0.00 0.00 3.21
2856 3317 4.740822 GCGGGGCTGGGTGAACAT 62.741 66.667 0.00 0.00 0.00 2.71
2858 3319 4.966787 TTGCGGGGCTGGGTGAAC 62.967 66.667 0.00 0.00 0.00 3.18
2859 3320 4.966787 GTTGCGGGGCTGGGTGAA 62.967 66.667 0.00 0.00 0.00 3.18
2872 3333 2.100216 CATAACGGGCGCAGTTGC 59.900 61.111 24.46 1.53 33.42 4.17
2873 3334 2.100216 GCATAACGGGCGCAGTTG 59.900 61.111 24.46 14.18 33.42 3.16
2888 3349 1.228094 TGGACATGCAACTTCCGCA 60.228 52.632 0.00 0.00 44.94 5.69
2889 3350 1.210155 GTGGACATGCAACTTCCGC 59.790 57.895 8.82 8.82 32.96 5.54
2890 3351 0.238289 GTGTGGACATGCAACTTCCG 59.762 55.000 0.00 0.00 31.38 4.30
2891 3352 0.598065 GGTGTGGACATGCAACTTCC 59.402 55.000 0.00 0.00 0.00 3.46
2892 3353 0.238289 CGGTGTGGACATGCAACTTC 59.762 55.000 0.00 0.00 0.00 3.01
2893 3354 1.172180 CCGGTGTGGACATGCAACTT 61.172 55.000 0.00 0.00 42.00 2.66
2894 3355 1.600636 CCGGTGTGGACATGCAACT 60.601 57.895 0.00 0.00 42.00 3.16
2895 3356 2.625823 CCCGGTGTGGACATGCAAC 61.626 63.158 0.00 0.00 42.00 4.17
2896 3357 2.282110 CCCGGTGTGGACATGCAA 60.282 61.111 0.00 0.00 42.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.