Multiple sequence alignment - TraesCS5B01G232400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G232400 chr5B 100.000 5995 0 0 1 5995 410536430 410530436 0.000000e+00 11071.0
1 TraesCS5B01G232400 chr5B 95.238 63 2 1 192 254 410536295 410536234 1.380000e-16 99.0
2 TraesCS5B01G232400 chr5B 96.000 50 1 1 195 243 369481838 369481887 4.980000e-11 80.5
3 TraesCS5B01G232400 chr5B 90.000 60 5 1 195 253 20702895 20702836 6.440000e-10 76.8
4 TraesCS5B01G232400 chr5D 95.323 4426 148 23 1583 5992 349868154 349863772 0.000000e+00 6972.0
5 TraesCS5B01G232400 chr5D 82.430 922 75 42 608 1496 349869019 349868152 0.000000e+00 725.0
6 TraesCS5B01G232400 chr5D 88.889 261 16 3 232 492 349869322 349869075 5.840000e-80 309.0
7 TraesCS5B01G232400 chr5A 95.638 3026 112 10 2978 5992 450166429 450163413 0.000000e+00 4839.0
8 TraesCS5B01G232400 chr5A 92.795 1388 57 17 1583 2947 450167797 450166430 0.000000e+00 1969.0
9 TraesCS5B01G232400 chr5A 84.914 1160 83 40 297 1436 450168915 450167828 0.000000e+00 1088.0
10 TraesCS5B01G232400 chr5A 95.238 63 3 0 247 309 450168992 450168930 3.820000e-17 100.0
11 TraesCS5B01G232400 chr5A 90.000 60 3 3 181 240 11038668 11038724 2.320000e-09 75.0
12 TraesCS5B01G232400 chr1D 89.205 1195 104 19 3058 4248 455130759 455129586 0.000000e+00 1469.0
13 TraesCS5B01G232400 chr1D 83.576 688 83 12 2377 3063 455143406 455142748 8.540000e-173 617.0
14 TraesCS5B01G232400 chr1D 87.240 384 33 6 1995 2368 455143881 455143504 2.000000e-114 424.0
15 TraesCS5B01G232400 chr1D 89.011 182 16 3 22 200 160451657 160451477 7.820000e-54 222.0
16 TraesCS5B01G232400 chr1D 85.976 164 18 1 4327 4490 455129555 455129397 2.870000e-38 171.0
17 TraesCS5B01G232400 chr1D 100.000 45 0 0 196 240 28013438 28013394 3.850000e-12 84.2
18 TraesCS5B01G232400 chr7B 87.001 1177 105 22 2366 3540 646036003 646034873 0.000000e+00 1282.0
19 TraesCS5B01G232400 chr7B 93.491 169 9 2 18 185 424979910 424980077 3.590000e-62 250.0
20 TraesCS5B01G232400 chr7B 90.556 180 12 4 8 183 151166203 151166381 3.610000e-57 233.0
21 TraesCS5B01G232400 chr7B 86.408 206 20 7 8 206 371733322 371733118 1.010000e-52 219.0
22 TraesCS5B01G232400 chr7B 95.833 96 3 1 1492 1586 412543772 412543677 2.890000e-33 154.0
23 TraesCS5B01G232400 chr7B 87.302 126 13 3 3485 3610 646034869 646034747 2.250000e-29 141.0
24 TraesCS5B01G232400 chr7B 88.525 61 4 3 195 253 658896193 658896252 3.000000e-08 71.3
25 TraesCS5B01G232400 chr6B 86.916 1177 103 23 2366 3540 124630903 124629776 0.000000e+00 1273.0
26 TraesCS5B01G232400 chr6B 85.581 749 71 18 3752 4490 481663763 481663042 0.000000e+00 750.0
27 TraesCS5B01G232400 chr6B 86.701 391 36 11 235 612 457271605 457271992 2.580000e-113 420.0
28 TraesCS5B01G232400 chr6B 88.043 184 18 3 19 199 221189289 221189471 1.310000e-51 215.0
29 TraesCS5B01G232400 chr6B 97.701 87 1 1 1501 1586 191540715 191540629 1.350000e-31 148.0
30 TraesCS5B01G232400 chr6B 94.792 96 2 3 1494 1588 715680153 715680246 4.840000e-31 147.0
31 TraesCS5B01G232400 chr6B 91.346 104 8 1 1492 1594 13443716 13443819 2.250000e-29 141.0
32 TraesCS5B01G232400 chr6B 86.508 126 14 3 3485 3610 124629772 124629650 1.050000e-27 135.0
33 TraesCS5B01G232400 chr2A 81.737 783 105 17 2773 3552 753425559 753426306 2.370000e-173 619.0
34 TraesCS5B01G232400 chr2A 96.739 92 2 1 1496 1586 733526210 733526301 1.040000e-32 152.0
35 TraesCS5B01G232400 chr3D 84.441 662 53 24 1995 2621 380254352 380254998 1.850000e-169 606.0
36 TraesCS5B01G232400 chr3D 88.889 261 25 2 2392 2652 501136674 501136418 9.700000e-83 318.0
37 TraesCS5B01G232400 chr4D 87.789 475 32 16 240 699 331661838 331661375 3.180000e-147 532.0
38 TraesCS5B01G232400 chr4D 91.018 167 13 2 22 187 58643917 58643752 2.170000e-54 224.0
39 TraesCS5B01G232400 chr4D 93.939 99 4 2 1496 1592 76446903 76446805 1.350000e-31 148.0
40 TraesCS5B01G232400 chr1A 90.186 377 28 7 1995 2368 549126181 549125811 3.250000e-132 483.0
41 TraesCS5B01G232400 chr1A 87.907 215 21 3 2377 2590 549125431 549125221 1.290000e-61 248.0
42 TraesCS5B01G232400 chr1A 90.000 110 9 2 2790 2897 549119559 549119450 2.250000e-29 141.0
43 TraesCS5B01G232400 chr2B 85.496 393 43 11 230 612 516320932 516320544 1.210000e-106 398.0
44 TraesCS5B01G232400 chr2B 93.865 163 9 1 22 184 650282214 650282375 1.670000e-60 244.0
45 TraesCS5B01G232400 chr2B 90.643 171 13 3 19 187 685759787 685759956 2.170000e-54 224.0
46 TraesCS5B01G232400 chr2B 93.939 99 4 2 1497 1594 782881291 782881388 1.350000e-31 148.0
47 TraesCS5B01G232400 chr2B 88.235 119 10 4 1481 1595 456022092 456022210 8.100000e-29 139.0
48 TraesCS5B01G232400 chr1B 82.632 380 36 8 240 612 121743366 121743722 5.840000e-80 309.0
49 TraesCS5B01G232400 chr1B 92.571 175 11 2 13 186 401623613 401623440 3.590000e-62 250.0
50 TraesCS5B01G232400 chr1B 93.491 169 9 2 18 185 543805938 543806105 3.590000e-62 250.0
51 TraesCS5B01G232400 chr1B 93.452 168 9 2 19 185 637500250 637500084 1.290000e-61 248.0
52 TraesCS5B01G232400 chr3B 95.062 162 7 1 22 183 243784205 243784045 2.770000e-63 254.0
53 TraesCS5B01G232400 chr3B 90.230 174 14 3 19 191 263380162 263380333 2.170000e-54 224.0
54 TraesCS5B01G232400 chr3B 89.011 182 15 5 14 192 263270993 263271172 2.810000e-53 220.0
55 TraesCS5B01G232400 chr4B 93.491 169 9 2 18 185 352835564 352835397 3.590000e-62 250.0
56 TraesCS5B01G232400 chr4B 90.055 181 12 5 18 194 448896218 448896040 4.670000e-56 230.0
57 TraesCS5B01G232400 chr4B 88.525 183 17 4 19 199 537193931 537194111 1.010000e-52 219.0
58 TraesCS5B01G232400 chr4B 88.710 62 4 3 181 241 42708591 42708650 8.330000e-09 73.1
59 TraesCS5B01G232400 chr4B 90.909 55 3 2 198 251 448896093 448896040 8.330000e-09 73.1
60 TraesCS5B01G232400 chr2D 92.398 171 10 3 15 184 71262032 71262200 2.160000e-59 241.0
61 TraesCS5B01G232400 chr6A 92.157 102 6 2 1490 1589 610209162 610209061 6.260000e-30 143.0
62 TraesCS5B01G232400 chr7D 94.000 50 2 1 193 242 149097322 149097370 2.320000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G232400 chr5B 410530436 410536430 5994 True 5585.000000 11071 97.619000 1 5995 2 chr5B.!!$R2 5994
1 TraesCS5B01G232400 chr5D 349863772 349869322 5550 True 2668.666667 6972 88.880667 232 5992 3 chr5D.!!$R1 5760
2 TraesCS5B01G232400 chr5A 450163413 450168992 5579 True 1999.000000 4839 92.146250 247 5992 4 chr5A.!!$R1 5745
3 TraesCS5B01G232400 chr1D 455129397 455130759 1362 True 820.000000 1469 87.590500 3058 4490 2 chr1D.!!$R3 1432
4 TraesCS5B01G232400 chr1D 455142748 455143881 1133 True 520.500000 617 85.408000 1995 3063 2 chr1D.!!$R4 1068
5 TraesCS5B01G232400 chr7B 646034747 646036003 1256 True 711.500000 1282 87.151500 2366 3610 2 chr7B.!!$R3 1244
6 TraesCS5B01G232400 chr6B 481663042 481663763 721 True 750.000000 750 85.581000 3752 4490 1 chr6B.!!$R2 738
7 TraesCS5B01G232400 chr6B 124629650 124630903 1253 True 704.000000 1273 86.712000 2366 3610 2 chr6B.!!$R3 1244
8 TraesCS5B01G232400 chr2A 753425559 753426306 747 False 619.000000 619 81.737000 2773 3552 1 chr2A.!!$F2 779
9 TraesCS5B01G232400 chr3D 380254352 380254998 646 False 606.000000 606 84.441000 1995 2621 1 chr3D.!!$F1 626
10 TraesCS5B01G232400 chr1A 549125221 549126181 960 True 365.500000 483 89.046500 1995 2590 2 chr1A.!!$R2 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 604 0.180171 AAACCCAGCCAGCCAAAAAC 59.820 50.0 0.00 0.0 0.00 2.43 F
619 659 0.252284 TCCGCTCTCCTTTCCCTTCT 60.252 55.0 0.00 0.0 0.00 2.85 F
923 987 0.319555 TCCTCGCCTTTGTCACTTCG 60.320 55.0 0.00 0.0 0.00 3.79 F
967 1031 0.322008 CTTTGAGCCGCTCCTCCTTT 60.322 55.0 17.81 0.0 0.00 3.11 F
2302 2402 0.324943 GGCTTCCTGAGTGGTTGCTA 59.675 55.0 0.00 0.0 36.19 3.49 F
2377 2477 1.412079 TGTGGATTGCCTGTTTGCTT 58.588 45.0 0.00 0.0 34.31 3.91 F
4121 4709 0.692419 AGACTATCCTGCCCCCACAG 60.692 60.0 0.00 0.0 37.42 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2268 2367 2.024414 GAAGCCAACAGACAACCAACT 58.976 47.619 0.00 0.00 0.00 3.16 R
2622 3131 7.175347 TCATTATGCTCACTTAACTCAGAGT 57.825 36.000 0.00 0.00 0.00 3.24 R
2652 3161 2.676839 GCTGGACTGTTGACATGATCAG 59.323 50.000 0.00 4.81 38.99 2.90 R
2953 3466 3.775316 ACTATGGCAGTGGCTAACTTAGT 59.225 43.478 18.53 12.84 36.83 2.24 R
3881 4469 2.484594 GGAGCTCAGAAGGGTCAATAGC 60.485 54.545 17.19 0.00 33.45 2.97 R
4265 4853 4.706962 AGCATCAAAACCTACCTGGAATTC 59.293 41.667 0.00 0.00 39.71 2.17 R
5721 6324 0.327924 AACTCATGCGATGGGACCAA 59.672 50.000 0.00 0.00 34.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.487299 AAGTGACAATCTATTACTCCCTCC 57.513 41.667 0.00 0.00 0.00 4.30
31 32 4.585162 AGTGACAATCTATTACTCCCTCCG 59.415 45.833 0.00 0.00 0.00 4.63
32 33 4.341520 GTGACAATCTATTACTCCCTCCGT 59.658 45.833 0.00 0.00 0.00 4.69
33 34 4.960469 TGACAATCTATTACTCCCTCCGTT 59.040 41.667 0.00 0.00 0.00 4.44
34 35 5.068723 TGACAATCTATTACTCCCTCCGTTC 59.931 44.000 0.00 0.00 0.00 3.95
35 36 5.209659 ACAATCTATTACTCCCTCCGTTCT 58.790 41.667 0.00 0.00 0.00 3.01
36 37 5.661759 ACAATCTATTACTCCCTCCGTTCTT 59.338 40.000 0.00 0.00 0.00 2.52
37 38 6.837568 ACAATCTATTACTCCCTCCGTTCTTA 59.162 38.462 0.00 0.00 0.00 2.10
38 39 7.343833 ACAATCTATTACTCCCTCCGTTCTTAA 59.656 37.037 0.00 0.00 0.00 1.85
39 40 7.909485 ATCTATTACTCCCTCCGTTCTTAAA 57.091 36.000 0.00 0.00 0.00 1.52
40 41 7.909485 TCTATTACTCCCTCCGTTCTTAAAT 57.091 36.000 0.00 0.00 0.00 1.40
41 42 9.597681 ATCTATTACTCCCTCCGTTCTTAAATA 57.402 33.333 0.00 0.00 0.00 1.40
42 43 9.597681 TCTATTACTCCCTCCGTTCTTAAATAT 57.402 33.333 0.00 0.00 0.00 1.28
46 47 7.672122 ACTCCCTCCGTTCTTAAATATAAGT 57.328 36.000 0.00 0.00 39.65 2.24
47 48 7.724287 ACTCCCTCCGTTCTTAAATATAAGTC 58.276 38.462 0.00 0.00 39.65 3.01
48 49 7.564292 ACTCCCTCCGTTCTTAAATATAAGTCT 59.436 37.037 0.00 0.00 39.65 3.24
49 50 8.315220 TCCCTCCGTTCTTAAATATAAGTCTT 57.685 34.615 0.00 0.00 39.65 3.01
50 51 8.765517 TCCCTCCGTTCTTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 39.65 2.52
71 72 9.699703 GTCTTTATAGAGATTCCACTATGAACC 57.300 37.037 0.00 0.00 32.57 3.62
72 73 9.434275 TCTTTATAGAGATTCCACTATGAACCA 57.566 33.333 9.70 0.00 32.57 3.67
73 74 9.482627 CTTTATAGAGATTCCACTATGAACCAC 57.517 37.037 9.70 0.00 32.57 4.16
74 75 8.547481 TTATAGAGATTCCACTATGAACCACA 57.453 34.615 9.70 0.00 32.57 4.17
75 76 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
76 77 8.727100 ATAGAGATTCCACTATGAACCACATA 57.273 34.615 0.00 0.00 40.07 2.29
77 78 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
78 79 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
79 80 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
80 81 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
81 82 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
82 83 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
84 85 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
85 86 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
86 87 7.309560 CCACTATGAACCACATACGGATGTATA 60.310 40.741 14.23 6.48 44.82 1.47
87 88 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
88 89 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
89 90 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
90 91 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
91 92 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
92 93 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
93 94 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
94 95 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
95 96 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
96 97 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
97 98 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
98 99 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
101 102 8.484641 ACGGATGTATATAGATGCATTTTGAG 57.515 34.615 11.19 0.00 38.38 3.02
102 103 8.097038 ACGGATGTATATAGATGCATTTTGAGT 58.903 33.333 11.19 0.00 38.38 3.41
103 104 8.385858 CGGATGTATATAGATGCATTTTGAGTG 58.614 37.037 11.19 0.00 38.38 3.51
104 105 9.224267 GGATGTATATAGATGCATTTTGAGTGT 57.776 33.333 0.00 0.00 38.38 3.55
111 112 8.969260 ATAGATGCATTTTGAGTGTAGATTCA 57.031 30.769 0.00 0.00 0.00 2.57
112 113 7.081526 AGATGCATTTTGAGTGTAGATTCAC 57.918 36.000 0.00 0.00 38.46 3.18
122 123 5.948992 AGTGTAGATTCACTCCTTTTTGC 57.051 39.130 0.00 0.00 44.07 3.68
123 124 5.625150 AGTGTAGATTCACTCCTTTTTGCT 58.375 37.500 0.00 0.00 44.07 3.91
124 125 6.064717 AGTGTAGATTCACTCCTTTTTGCTT 58.935 36.000 0.00 0.00 44.07 3.91
125 126 6.205658 AGTGTAGATTCACTCCTTTTTGCTTC 59.794 38.462 0.00 0.00 44.07 3.86
126 127 4.756084 AGATTCACTCCTTTTTGCTTCG 57.244 40.909 0.00 0.00 0.00 3.79
127 128 4.137543 AGATTCACTCCTTTTTGCTTCGT 58.862 39.130 0.00 0.00 0.00 3.85
128 129 5.305585 AGATTCACTCCTTTTTGCTTCGTA 58.694 37.500 0.00 0.00 0.00 3.43
129 130 5.940470 AGATTCACTCCTTTTTGCTTCGTAT 59.060 36.000 0.00 0.00 0.00 3.06
130 131 5.356882 TTCACTCCTTTTTGCTTCGTATG 57.643 39.130 0.00 0.00 0.00 2.39
131 132 4.385825 TCACTCCTTTTTGCTTCGTATGT 58.614 39.130 0.00 0.00 0.00 2.29
132 133 5.543714 TCACTCCTTTTTGCTTCGTATGTA 58.456 37.500 0.00 0.00 0.00 2.29
133 134 5.637810 TCACTCCTTTTTGCTTCGTATGTAG 59.362 40.000 0.00 0.00 0.00 2.74
134 135 5.408604 CACTCCTTTTTGCTTCGTATGTAGT 59.591 40.000 0.00 0.00 0.00 2.73
135 136 5.638234 ACTCCTTTTTGCTTCGTATGTAGTC 59.362 40.000 0.00 0.00 0.00 2.59
136 137 5.790593 TCCTTTTTGCTTCGTATGTAGTCT 58.209 37.500 0.00 0.00 0.00 3.24
137 138 6.927416 TCCTTTTTGCTTCGTATGTAGTCTA 58.073 36.000 0.00 0.00 0.00 2.59
138 139 7.553334 TCCTTTTTGCTTCGTATGTAGTCTAT 58.447 34.615 0.00 0.00 0.00 1.98
139 140 8.689061 TCCTTTTTGCTTCGTATGTAGTCTATA 58.311 33.333 0.00 0.00 0.00 1.31
140 141 9.309516 CCTTTTTGCTTCGTATGTAGTCTATAA 57.690 33.333 0.00 0.00 0.00 0.98
172 173 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
173 174 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
174 175 8.579006 TCTACAAAGACTTACATTTAGGAACGA 58.421 33.333 0.00 0.00 0.00 3.85
175 176 9.199982 CTACAAAGACTTACATTTAGGAACGAA 57.800 33.333 0.00 0.00 0.00 3.85
176 177 8.084590 ACAAAGACTTACATTTAGGAACGAAG 57.915 34.615 0.00 0.00 0.00 3.79
177 178 7.172703 ACAAAGACTTACATTTAGGAACGAAGG 59.827 37.037 0.00 0.00 0.00 3.46
178 179 6.600882 AGACTTACATTTAGGAACGAAGGA 57.399 37.500 0.00 0.00 0.00 3.36
179 180 7.001099 AGACTTACATTTAGGAACGAAGGAA 57.999 36.000 0.00 0.00 0.00 3.36
180 181 7.097834 AGACTTACATTTAGGAACGAAGGAAG 58.902 38.462 0.00 0.00 0.00 3.46
181 182 6.766429 ACTTACATTTAGGAACGAAGGAAGT 58.234 36.000 0.00 0.00 0.00 3.01
182 183 7.899973 ACTTACATTTAGGAACGAAGGAAGTA 58.100 34.615 0.00 0.00 0.00 2.24
183 184 8.537858 ACTTACATTTAGGAACGAAGGAAGTAT 58.462 33.333 0.00 0.00 0.00 2.12
185 186 9.807649 TTACATTTAGGAACGAAGGAAGTATAC 57.192 33.333 0.00 0.00 0.00 1.47
186 187 8.075761 ACATTTAGGAACGAAGGAAGTATACT 57.924 34.615 0.00 0.00 0.00 2.12
187 188 9.193806 ACATTTAGGAACGAAGGAAGTATACTA 57.806 33.333 5.65 0.00 0.00 1.82
188 189 9.460906 CATTTAGGAACGAAGGAAGTATACTAC 57.539 37.037 5.65 2.59 0.00 2.73
189 190 8.814038 TTTAGGAACGAAGGAAGTATACTACT 57.186 34.615 5.65 5.03 41.73 2.57
190 191 9.905713 TTTAGGAACGAAGGAAGTATACTACTA 57.094 33.333 5.65 0.00 38.26 1.82
191 192 7.800155 AGGAACGAAGGAAGTATACTACTAC 57.200 40.000 5.65 0.00 38.26 2.73
192 193 7.572814 AGGAACGAAGGAAGTATACTACTACT 58.427 38.462 5.65 0.00 38.26 2.57
193 194 8.709308 AGGAACGAAGGAAGTATACTACTACTA 58.291 37.037 5.65 0.00 38.26 1.82
194 195 9.500785 GGAACGAAGGAAGTATACTACTACTAT 57.499 37.037 5.65 0.00 38.26 2.12
229 230 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
230 231 9.706691 CTCTACAAAGACTTACATTTAGGAACA 57.293 33.333 0.00 0.00 0.00 3.18
231 232 9.706691 TCTACAAAGACTTACATTTAGGAACAG 57.293 33.333 0.00 0.00 0.00 3.16
232 233 9.706691 CTACAAAGACTTACATTTAGGAACAGA 57.293 33.333 0.00 0.00 0.00 3.41
233 234 8.608844 ACAAAGACTTACATTTAGGAACAGAG 57.391 34.615 0.00 0.00 0.00 3.35
234 235 7.661847 ACAAAGACTTACATTTAGGAACAGAGG 59.338 37.037 0.00 0.00 0.00 3.69
235 236 7.554959 AAGACTTACATTTAGGAACAGAGGA 57.445 36.000 0.00 0.00 0.00 3.71
236 237 7.554959 AGACTTACATTTAGGAACAGAGGAA 57.445 36.000 0.00 0.00 0.00 3.36
237 238 7.616313 AGACTTACATTTAGGAACAGAGGAAG 58.384 38.462 0.00 0.00 0.00 3.46
238 239 7.235812 AGACTTACATTTAGGAACAGAGGAAGT 59.764 37.037 0.00 0.00 0.00 3.01
239 240 8.431910 ACTTACATTTAGGAACAGAGGAAGTA 57.568 34.615 0.00 0.00 0.00 2.24
240 241 9.047947 ACTTACATTTAGGAACAGAGGAAGTAT 57.952 33.333 0.00 0.00 0.00 2.12
243 244 8.611051 ACATTTAGGAACAGAGGAAGTATACT 57.389 34.615 0.00 0.00 0.00 2.12
244 245 9.710818 ACATTTAGGAACAGAGGAAGTATACTA 57.289 33.333 5.65 0.00 0.00 1.82
284 285 1.272203 TGTGACAATTTGGCGGGGTAT 60.272 47.619 0.78 0.00 0.00 2.73
286 287 1.004862 TGACAATTTGGCGGGGTATGA 59.995 47.619 0.78 0.00 0.00 2.15
344 372 4.030913 AGTATTTGGCACCAGCTAGACTA 58.969 43.478 0.00 0.00 41.70 2.59
405 444 2.256158 CGCAGCCACACACCATTG 59.744 61.111 0.00 0.00 0.00 2.82
406 445 2.048877 GCAGCCACACACCATTGC 60.049 61.111 0.00 0.00 0.00 3.56
407 446 2.652530 CAGCCACACACCATTGCC 59.347 61.111 0.00 0.00 0.00 4.52
408 447 2.198150 AGCCACACACCATTGCCA 59.802 55.556 0.00 0.00 0.00 4.92
409 448 2.202395 AGCCACACACCATTGCCAC 61.202 57.895 0.00 0.00 0.00 5.01
410 449 2.644418 CCACACACCATTGCCACG 59.356 61.111 0.00 0.00 0.00 4.94
411 450 2.050168 CACACACCATTGCCACGC 60.050 61.111 0.00 0.00 0.00 5.34
412 451 3.294493 ACACACCATTGCCACGCC 61.294 61.111 0.00 0.00 0.00 5.68
413 452 3.293714 CACACCATTGCCACGCCA 61.294 61.111 0.00 0.00 0.00 5.69
414 453 2.283101 ACACCATTGCCACGCCAT 60.283 55.556 0.00 0.00 0.00 4.40
415 454 1.907807 ACACCATTGCCACGCCATT 60.908 52.632 0.00 0.00 0.00 3.16
463 502 1.445095 CATTGCCTCTCCCCTCTCG 59.555 63.158 0.00 0.00 0.00 4.04
482 521 2.658064 GCTGGCCTCTGCTCACTCT 61.658 63.158 3.32 0.00 37.74 3.24
504 543 1.167033 ACCTCCCCAAAGTCCCAAAT 58.833 50.000 0.00 0.00 0.00 2.32
515 554 6.259829 CCCAAAGTCCCAAATAAACAAACAAG 59.740 38.462 0.00 0.00 0.00 3.16
518 557 4.653801 AGTCCCAAATAAACAAACAAGCCT 59.346 37.500 0.00 0.00 0.00 4.58
520 559 4.039852 TCCCAAATAAACAAACAAGCCTCC 59.960 41.667 0.00 0.00 0.00 4.30
521 560 4.314961 CCAAATAAACAAACAAGCCTCCC 58.685 43.478 0.00 0.00 0.00 4.30
522 561 4.040339 CCAAATAAACAAACAAGCCTCCCT 59.960 41.667 0.00 0.00 0.00 4.20
523 562 5.230182 CAAATAAACAAACAAGCCTCCCTC 58.770 41.667 0.00 0.00 0.00 4.30
540 579 1.700186 CCTCCCTCCCTATAAGCAACC 59.300 57.143 0.00 0.00 0.00 3.77
560 599 2.806009 GCAAAAACCCAGCCAGCCA 61.806 57.895 0.00 0.00 0.00 4.75
565 604 0.180171 AAACCCAGCCAGCCAAAAAC 59.820 50.000 0.00 0.00 0.00 2.43
567 606 2.356194 CCAGCCAGCCAAAAACGC 60.356 61.111 0.00 0.00 0.00 4.84
579 618 3.727726 CCAAAAACGCTCCCAAATTCTT 58.272 40.909 0.00 0.00 0.00 2.52
619 659 0.252284 TCCGCTCTCCTTTCCCTTCT 60.252 55.000 0.00 0.00 0.00 2.85
629 669 2.159085 CCTTTCCCTTCTATCGCTTCGT 60.159 50.000 0.00 0.00 0.00 3.85
633 673 2.099263 TCCCTTCTATCGCTTCGTTCAG 59.901 50.000 0.00 0.00 0.00 3.02
654 694 2.687914 GCAGAAGGGGAGGCAAACATAT 60.688 50.000 0.00 0.00 0.00 1.78
667 712 6.900194 AGGCAAACATATCCTAGCTTCTAAA 58.100 36.000 0.00 0.00 0.00 1.85
668 713 7.346471 AGGCAAACATATCCTAGCTTCTAAAA 58.654 34.615 0.00 0.00 0.00 1.52
696 741 4.394610 CAGGAAAAGAGCTTAGCTTCCTTC 59.605 45.833 19.27 15.28 38.55 3.46
883 947 2.408565 CTAAGGGGTGGATAAGAGCCA 58.591 52.381 0.00 0.00 32.22 4.75
914 978 2.359975 CGGCCTTTCCTCGCCTTT 60.360 61.111 0.00 0.00 43.38 3.11
915 979 2.690778 CGGCCTTTCCTCGCCTTTG 61.691 63.158 0.00 0.00 43.38 2.77
917 981 1.587043 GGCCTTTCCTCGCCTTTGTC 61.587 60.000 0.00 0.00 42.21 3.18
918 982 0.889186 GCCTTTCCTCGCCTTTGTCA 60.889 55.000 0.00 0.00 0.00 3.58
920 984 1.543429 CCTTTCCTCGCCTTTGTCACT 60.543 52.381 0.00 0.00 0.00 3.41
921 985 2.222027 CTTTCCTCGCCTTTGTCACTT 58.778 47.619 0.00 0.00 0.00 3.16
923 987 0.319555 TCCTCGCCTTTGTCACTTCG 60.320 55.000 0.00 0.00 0.00 3.79
928 992 0.884704 GCCTTTGTCACTTCGCCTCA 60.885 55.000 0.00 0.00 0.00 3.86
929 993 1.813513 CCTTTGTCACTTCGCCTCAT 58.186 50.000 0.00 0.00 0.00 2.90
930 994 2.154462 CCTTTGTCACTTCGCCTCATT 58.846 47.619 0.00 0.00 0.00 2.57
931 995 2.554032 CCTTTGTCACTTCGCCTCATTT 59.446 45.455 0.00 0.00 0.00 2.32
932 996 3.558505 CTTTGTCACTTCGCCTCATTTG 58.441 45.455 0.00 0.00 0.00 2.32
933 997 1.522668 TGTCACTTCGCCTCATTTGG 58.477 50.000 0.00 0.00 0.00 3.28
934 998 1.202758 TGTCACTTCGCCTCATTTGGT 60.203 47.619 0.00 0.00 0.00 3.67
935 999 1.197721 GTCACTTCGCCTCATTTGGTG 59.802 52.381 0.00 0.00 38.85 4.17
963 1027 1.153469 CTCCTTTGAGCCGCTCCTC 60.153 63.158 17.81 0.00 0.00 3.71
964 1028 2.124942 CCTTTGAGCCGCTCCTCC 60.125 66.667 17.81 0.00 0.00 4.30
965 1029 2.664081 CCTTTGAGCCGCTCCTCCT 61.664 63.158 17.81 0.00 0.00 3.69
966 1030 1.298014 CTTTGAGCCGCTCCTCCTT 59.702 57.895 17.81 0.00 0.00 3.36
967 1031 0.322008 CTTTGAGCCGCTCCTCCTTT 60.322 55.000 17.81 0.00 0.00 3.11
968 1032 0.606401 TTTGAGCCGCTCCTCCTTTG 60.606 55.000 17.81 0.00 0.00 2.77
969 1033 2.124942 GAGCCGCTCCTCCTTTGG 60.125 66.667 9.42 0.00 0.00 3.28
970 1034 4.416738 AGCCGCTCCTCCTTTGGC 62.417 66.667 0.00 0.00 46.07 4.52
992 1056 0.550914 TGGTGTCCTCTGCTTGGTTT 59.449 50.000 0.00 0.00 0.00 3.27
1016 1080 2.685366 CATGGTGGGCATGGAGGT 59.315 61.111 0.00 0.00 0.00 3.85
1070 1134 2.158608 AGGTACTTGCTGCTCACCTTTT 60.159 45.455 0.00 0.00 36.16 2.27
1080 1144 0.947244 CTCACCTTTTGCTTCGTGCT 59.053 50.000 5.00 0.00 43.37 4.40
1087 1151 0.867746 TTTGCTTCGTGCTACTGCTG 59.132 50.000 5.00 0.00 43.37 4.41
1095 1162 1.927174 CGTGCTACTGCTGGTATTGAC 59.073 52.381 0.00 0.00 40.48 3.18
1101 1168 2.704572 ACTGCTGGTATTGACTGAAGC 58.295 47.619 0.00 0.00 0.00 3.86
1105 1172 2.675348 GCTGGTATTGACTGAAGCAGAC 59.325 50.000 5.05 0.00 40.34 3.51
1106 1173 3.618507 GCTGGTATTGACTGAAGCAGACT 60.619 47.826 5.05 0.00 40.34 3.24
1127 1194 6.817765 ACTTCTGTCTTCTGAAAAACACAA 57.182 33.333 2.20 0.00 32.68 3.33
1131 1198 9.143631 CTTCTGTCTTCTGAAAAACACAATTTT 57.856 29.630 2.20 0.00 35.29 1.82
1147 1217 5.398122 CACAATTTTCATCGTAGCGTTTTGT 59.602 36.000 0.00 0.00 0.00 2.83
1149 1219 5.607119 ATTTTCATCGTAGCGTTTTGTCT 57.393 34.783 0.00 0.00 0.00 3.41
1150 1220 6.715344 ATTTTCATCGTAGCGTTTTGTCTA 57.285 33.333 0.00 0.00 0.00 2.59
1151 1221 5.756950 TTTCATCGTAGCGTTTTGTCTAG 57.243 39.130 0.00 0.00 0.00 2.43
1154 1224 5.224888 TCATCGTAGCGTTTTGTCTAGTTT 58.775 37.500 0.00 0.00 0.00 2.66
1186 1256 8.803201 TTGCTACATCTTCTCTTTATATGTCG 57.197 34.615 0.00 0.00 33.15 4.35
1187 1257 6.863645 TGCTACATCTTCTCTTTATATGTCGC 59.136 38.462 0.00 0.00 38.80 5.19
1188 1258 7.087639 GCTACATCTTCTCTTTATATGTCGCT 58.912 38.462 0.00 0.00 36.72 4.93
1192 1262 8.200792 ACATCTTCTCTTTATATGTCGCTTCTT 58.799 33.333 0.00 0.00 0.00 2.52
1207 1277 4.338118 TCGCTTCTTGGTGAATTTGTTCTT 59.662 37.500 0.00 0.00 33.71 2.52
1213 1283 5.592282 TCTTGGTGAATTTGTTCTTGCTGTA 59.408 36.000 0.00 0.00 0.00 2.74
1216 1286 5.163513 GGTGAATTTGTTCTTGCTGTATGG 58.836 41.667 0.00 0.00 0.00 2.74
1219 1289 2.584835 TTGTTCTTGCTGTATGGGCT 57.415 45.000 0.00 0.00 0.00 5.19
1224 1294 0.813184 CTTGCTGTATGGGCTTGTGG 59.187 55.000 0.00 0.00 0.00 4.17
1228 1298 2.025416 TGCTGTATGGGCTTGTGGTAAT 60.025 45.455 0.00 0.00 0.00 1.89
1229 1299 3.023832 GCTGTATGGGCTTGTGGTAATT 58.976 45.455 0.00 0.00 0.00 1.40
1232 1302 4.269183 TGTATGGGCTTGTGGTAATTCAG 58.731 43.478 0.00 0.00 0.00 3.02
1237 1307 2.812011 GGCTTGTGGTAATTCAGTTCGT 59.188 45.455 0.00 0.00 0.00 3.85
1238 1308 3.120304 GGCTTGTGGTAATTCAGTTCGTC 60.120 47.826 0.00 0.00 0.00 4.20
1254 1324 4.999950 AGTTCGTCTGCTTCATTTCAGAAT 59.000 37.500 0.00 0.00 40.57 2.40
1259 1329 7.521529 TCGTCTGCTTCATTTCAGAATAAAAG 58.478 34.615 0.00 0.00 40.57 2.27
1266 1337 5.949735 TCATTTCAGAATAAAAGTTCGGCC 58.050 37.500 0.00 0.00 33.36 6.13
1267 1338 4.413495 TTTCAGAATAAAAGTTCGGCCG 57.587 40.909 22.12 22.12 33.36 6.13
1294 1370 6.395629 TCTTCCAGTACTAGGTGAAAAATCG 58.604 40.000 0.00 0.00 0.00 3.34
1304 1380 4.932146 AGGTGAAAAATCGTTGTTGGAAG 58.068 39.130 0.00 0.00 0.00 3.46
1317 1393 2.560542 TGTTGGAAGTGCACTGTGTTTT 59.439 40.909 22.49 2.42 0.00 2.43
1318 1394 2.923020 GTTGGAAGTGCACTGTGTTTTG 59.077 45.455 22.49 0.00 0.00 2.44
1319 1395 2.441410 TGGAAGTGCACTGTGTTTTGA 58.559 42.857 22.49 0.00 0.00 2.69
1320 1396 2.423185 TGGAAGTGCACTGTGTTTTGAG 59.577 45.455 22.49 0.00 0.00 3.02
1321 1397 2.423538 GGAAGTGCACTGTGTTTTGAGT 59.576 45.455 22.49 0.00 0.00 3.41
1322 1398 3.429085 GAAGTGCACTGTGTTTTGAGTG 58.571 45.455 22.49 0.00 42.18 3.51
1323 1399 2.436417 AGTGCACTGTGTTTTGAGTGT 58.564 42.857 20.97 0.00 41.47 3.55
1324 1400 2.819608 AGTGCACTGTGTTTTGAGTGTT 59.180 40.909 20.97 0.00 41.47 3.32
1325 1401 3.255642 AGTGCACTGTGTTTTGAGTGTTT 59.744 39.130 20.97 0.00 41.47 2.83
1326 1402 3.987220 GTGCACTGTGTTTTGAGTGTTTT 59.013 39.130 10.32 0.00 41.47 2.43
1327 1403 5.048364 AGTGCACTGTGTTTTGAGTGTTTTA 60.048 36.000 20.97 0.00 41.47 1.52
1339 1415 5.607939 TGAGTGTTTTAAGTGTCCTCTGA 57.392 39.130 0.00 0.00 0.00 3.27
1346 1424 7.012421 GTGTTTTAAGTGTCCTCTGAGATTTGT 59.988 37.037 6.17 0.00 0.00 2.83
1358 1436 7.398618 TCCTCTGAGATTTGTGACTAGAGAATT 59.601 37.037 6.17 0.00 33.76 2.17
1434 1512 1.600916 ACAGGGCTGCGGAAAAGTC 60.601 57.895 0.00 0.00 0.00 3.01
1466 1544 2.753055 TCCAGTATTGCGTAACAGCA 57.247 45.000 0.00 0.00 46.54 4.41
1491 1569 5.008712 TGAGCGAGTATTCCATGTGTAGTAG 59.991 44.000 0.00 0.00 0.00 2.57
1492 1570 4.888239 AGCGAGTATTCCATGTGTAGTAGT 59.112 41.667 0.00 0.00 0.00 2.73
1493 1571 6.060136 AGCGAGTATTCCATGTGTAGTAGTA 58.940 40.000 0.00 0.00 0.00 1.82
1494 1572 6.205076 AGCGAGTATTCCATGTGTAGTAGTAG 59.795 42.308 0.00 0.00 0.00 2.57
1495 1573 6.017275 GCGAGTATTCCATGTGTAGTAGTAGT 60.017 42.308 0.00 0.00 0.00 2.73
1496 1574 7.172190 GCGAGTATTCCATGTGTAGTAGTAGTA 59.828 40.741 0.00 0.00 0.00 1.82
1497 1575 9.049523 CGAGTATTCCATGTGTAGTAGTAGTAA 57.950 37.037 0.00 0.00 0.00 2.24
1499 1577 9.917887 AGTATTCCATGTGTAGTAGTAGTAAGT 57.082 33.333 0.00 0.00 0.00 2.24
1502 1580 9.917887 ATTCCATGTGTAGTAGTAGTAAGTAGT 57.082 33.333 0.00 0.00 0.00 2.73
1504 1582 9.823647 TCCATGTGTAGTAGTAGTAAGTAGTAC 57.176 37.037 0.00 0.00 37.70 2.73
1505 1583 9.829507 CCATGTGTAGTAGTAGTAAGTAGTACT 57.170 37.037 0.00 0.00 45.94 2.73
1508 1586 8.478877 TGTGTAGTAGTAGTAAGTAGTACTCCC 58.521 40.741 2.58 0.00 42.16 4.30
1509 1587 8.700973 GTGTAGTAGTAGTAAGTAGTACTCCCT 58.299 40.741 2.58 5.22 42.16 4.20
1510 1588 8.919145 TGTAGTAGTAGTAAGTAGTACTCCCTC 58.081 40.741 2.58 0.00 42.16 4.30
1511 1589 7.986553 AGTAGTAGTAAGTAGTACTCCCTCA 57.013 40.000 2.58 0.00 42.16 3.86
1512 1590 8.565780 AGTAGTAGTAAGTAGTACTCCCTCAT 57.434 38.462 2.58 0.00 42.16 2.90
1513 1591 9.667607 AGTAGTAGTAAGTAGTACTCCCTCATA 57.332 37.037 2.58 0.00 42.16 2.15
1516 1594 9.625747 AGTAGTAAGTAGTACTCCCTCATAAAC 57.374 37.037 2.58 0.00 42.37 2.01
1517 1595 9.625747 GTAGTAAGTAGTACTCCCTCATAAACT 57.374 37.037 2.58 0.00 42.37 2.66
1580 1658 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
1581 1659 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
1582 1660 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
1583 1661 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
1584 1662 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
1585 1663 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
1660 1738 1.512694 GGCAGTGTGGCTTTATGGC 59.487 57.895 0.00 0.00 40.14 4.40
1705 1783 4.040461 CCTTTCTGGTTCTTCACTACCTCA 59.960 45.833 0.00 0.00 35.41 3.86
1706 1784 5.454755 CCTTTCTGGTTCTTCACTACCTCAA 60.455 44.000 0.00 0.00 35.41 3.02
1883 1969 0.918983 TTAAGATGCCCAGGGGAGTG 59.081 55.000 7.91 0.00 37.50 3.51
1973 2061 7.110043 TGCATTTATTTGACCATGCATAAGA 57.890 32.000 0.00 0.00 45.50 2.10
2202 2301 4.262635 GCATTGCTAATGGCTACTCTAGGA 60.263 45.833 0.16 0.00 42.39 2.94
2268 2367 9.681062 ATGATGATGATGATGATGCACTAATTA 57.319 29.630 0.00 0.00 0.00 1.40
2302 2402 0.324943 GGCTTCCTGAGTGGTTGCTA 59.675 55.000 0.00 0.00 36.19 3.49
2377 2477 1.412079 TGTGGATTGCCTGTTTGCTT 58.588 45.000 0.00 0.00 34.31 3.91
2480 2986 7.434897 GGATGCTTTTGTTAATTTATGATCGCA 59.565 33.333 0.00 0.00 0.00 5.10
2481 2987 7.504922 TGCTTTTGTTAATTTATGATCGCAC 57.495 32.000 0.00 0.00 0.00 5.34
2482 2988 6.250315 TGCTTTTGTTAATTTATGATCGCACG 59.750 34.615 0.00 0.00 0.00 5.34
2622 3131 6.699575 TCGATCACAGATTGAGAAGATACA 57.300 37.500 0.00 0.00 37.77 2.29
2652 3161 7.442364 TGAGTTAAGTGAGCATAATGATAAGGC 59.558 37.037 0.00 0.00 0.00 4.35
2662 3171 6.598457 AGCATAATGATAAGGCTGATCATGTC 59.402 38.462 24.92 14.86 42.04 3.06
2698 3207 4.571889 CTGATGAACATGATTTGTCGACG 58.428 43.478 11.62 0.00 37.68 5.12
2703 3212 3.526931 ACATGATTTGTCGACGAGGAT 57.473 42.857 11.62 0.00 30.89 3.24
2770 3282 4.196971 AGGTAAACCGTCATGAATAAGCC 58.803 43.478 0.00 0.00 42.08 4.35
2972 3485 4.837093 TTACTAAGTTAGCCACTGCCAT 57.163 40.909 9.92 0.00 38.69 4.40
2973 3486 5.943349 TTACTAAGTTAGCCACTGCCATA 57.057 39.130 9.92 0.00 38.69 2.74
2974 3487 4.408182 ACTAAGTTAGCCACTGCCATAG 57.592 45.455 9.92 0.00 38.69 2.23
2975 3488 3.775316 ACTAAGTTAGCCACTGCCATAGT 59.225 43.478 9.92 0.00 41.36 2.12
2986 3499 3.480470 ACTGCCATAGTGCCATGTAATC 58.520 45.455 0.00 0.00 38.49 1.75
3596 4180 7.700505 TGCTGTTTATTGCTTATCTCAATCAG 58.299 34.615 0.00 0.00 35.87 2.90
4089 4677 6.856135 CTCAAATTCTGAGCATAGCATGTA 57.144 37.500 0.00 0.00 45.11 2.29
4108 4696 4.956085 TGTACACTTGTTGCACAGACTAT 58.044 39.130 0.00 0.00 0.00 2.12
4121 4709 0.692419 AGACTATCCTGCCCCCACAG 60.692 60.000 0.00 0.00 37.42 3.66
4159 4747 4.235079 TCTGTGGTTCCCTAAATCATGG 57.765 45.455 0.00 0.00 28.68 3.66
4265 4853 1.737793 GGCACGGATTTTGGTCACTAG 59.262 52.381 0.00 0.00 0.00 2.57
4294 4888 3.525199 AGGTAGGTTTTGATGCTGGAGAT 59.475 43.478 0.00 0.00 0.00 2.75
4411 5006 9.971922 AATGCAAGAAATAAGCCATTCTTATAC 57.028 29.630 0.00 0.00 44.89 1.47
4444 5039 4.342378 TGTCTACAATCTGATCAGTAGGGC 59.658 45.833 21.92 12.98 35.75 5.19
4455 5050 6.043127 TCTGATCAGTAGGGCAAGCATTTATA 59.957 38.462 21.92 0.00 0.00 0.98
4466 5061 7.396055 AGGGCAAGCATTTATAGTTTGTTTCTA 59.604 33.333 0.00 0.00 31.00 2.10
4643 5239 6.604171 TGGCATATTCTGGTCTAAACATCAT 58.396 36.000 0.00 0.00 0.00 2.45
4736 5332 0.185901 AACCAAGCCCAAAGAGAGCA 59.814 50.000 0.00 0.00 0.00 4.26
4855 5451 0.250295 CCTGAGCTTTCGACACCCAA 60.250 55.000 0.00 0.00 0.00 4.12
4863 5459 4.949856 AGCTTTCGACACCCAAATCATATT 59.050 37.500 0.00 0.00 0.00 1.28
4865 5461 5.733373 GCTTTCGACACCCAAATCATATTCC 60.733 44.000 0.00 0.00 0.00 3.01
4943 5539 3.068165 ACTTCGGCGATGATTCACTATCA 59.932 43.478 26.72 0.00 46.86 2.15
5029 5625 8.380743 ACTATCTCAATCTCTTCATGCATTTC 57.619 34.615 0.00 0.00 0.00 2.17
5031 5627 6.922247 TCTCAATCTCTTCATGCATTTCTC 57.078 37.500 0.00 0.00 0.00 2.87
5238 5834 8.404000 GCTAGTATTGTTGACTAGTAAGCACTA 58.596 37.037 10.60 0.00 45.51 2.74
5276 5872 5.176774 GGTTTCGGGTTTGAAATTGATGTTC 59.823 40.000 0.00 0.00 39.80 3.18
5306 5902 3.793559 TGGCTCTTTTAGACGATTAGGC 58.206 45.455 0.00 0.00 35.07 3.93
5542 6145 4.760715 TGCCATAAAATGCATTTGTGCTTT 59.239 33.333 24.74 10.85 38.42 3.51
5555 6158 1.151810 TGCTTTCTCCCTCCCACCT 60.152 57.895 0.00 0.00 0.00 4.00
5563 6166 1.930656 CCCTCCCACCTTCCCATGT 60.931 63.158 0.00 0.00 0.00 3.21
5645 6248 7.436376 CAGACATTAAAGAATATGCTCTGTCGA 59.564 37.037 8.75 0.00 32.05 4.20
5650 6253 4.371855 AGAATATGCTCTGTCGAACGAA 57.628 40.909 0.00 0.00 0.00 3.85
5701 6304 9.755804 GAGAACTATGAATAATCATCACAGTGA 57.244 33.333 5.50 5.50 42.75 3.41
5721 6324 6.148976 CAGTGAATCAGATTCTGTGTCATGTT 59.851 38.462 21.44 9.67 39.96 2.71
5732 6335 1.468520 GTGTCATGTTTGGTCCCATCG 59.531 52.381 0.00 0.00 0.00 3.84
5749 6352 3.622612 CCATCGCATGAGTTGTGTCAATA 59.377 43.478 0.00 0.00 37.14 1.90
5750 6353 4.094739 CCATCGCATGAGTTGTGTCAATAA 59.905 41.667 0.00 0.00 37.14 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.652290 GGAGGGAGTAATAGATTGTCACTTTAT 58.348 37.037 0.00 0.00 0.00 1.40
5 6 7.201884 CGGAGGGAGTAATAGATTGTCACTTTA 60.202 40.741 0.00 0.00 0.00 1.85
6 7 6.407074 CGGAGGGAGTAATAGATTGTCACTTT 60.407 42.308 0.00 0.00 0.00 2.66
7 8 5.069251 CGGAGGGAGTAATAGATTGTCACTT 59.931 44.000 0.00 0.00 0.00 3.16
9 10 4.341520 ACGGAGGGAGTAATAGATTGTCAC 59.658 45.833 0.00 0.00 0.00 3.67
11 12 5.302313 AGAACGGAGGGAGTAATAGATTGTC 59.698 44.000 0.00 0.00 0.00 3.18
12 13 5.209659 AGAACGGAGGGAGTAATAGATTGT 58.790 41.667 0.00 0.00 0.00 2.71
14 15 7.909485 TTAAGAACGGAGGGAGTAATAGATT 57.091 36.000 0.00 0.00 0.00 2.40
15 16 7.909485 TTTAAGAACGGAGGGAGTAATAGAT 57.091 36.000 0.00 0.00 0.00 1.98
16 17 7.909485 ATTTAAGAACGGAGGGAGTAATAGA 57.091 36.000 0.00 0.00 0.00 1.98
20 21 9.205513 ACTTATATTTAAGAACGGAGGGAGTAA 57.794 33.333 9.58 0.00 38.56 2.24
21 22 8.773033 ACTTATATTTAAGAACGGAGGGAGTA 57.227 34.615 9.58 0.00 38.56 2.59
22 23 7.564292 AGACTTATATTTAAGAACGGAGGGAGT 59.436 37.037 9.58 0.00 38.56 3.85
23 24 7.953752 AGACTTATATTTAAGAACGGAGGGAG 58.046 38.462 9.58 0.00 38.56 4.30
24 25 7.909485 AGACTTATATTTAAGAACGGAGGGA 57.091 36.000 9.58 0.00 38.56 4.20
25 26 8.959705 AAAGACTTATATTTAAGAACGGAGGG 57.040 34.615 9.58 0.00 38.56 4.30
45 46 9.699703 GGTTCATAGTGGAATCTCTATAAAGAC 57.300 37.037 0.00 0.00 30.97 3.01
46 47 9.434275 TGGTTCATAGTGGAATCTCTATAAAGA 57.566 33.333 0.00 0.00 30.97 2.52
47 48 9.482627 GTGGTTCATAGTGGAATCTCTATAAAG 57.517 37.037 0.00 0.00 30.97 1.85
48 49 8.988060 TGTGGTTCATAGTGGAATCTCTATAAA 58.012 33.333 0.00 0.00 30.97 1.40
49 50 8.547481 TGTGGTTCATAGTGGAATCTCTATAA 57.453 34.615 0.00 0.00 30.97 0.98
50 51 8.727100 ATGTGGTTCATAGTGGAATCTCTATA 57.273 34.615 0.00 0.00 34.67 1.31
51 52 7.623999 ATGTGGTTCATAGTGGAATCTCTAT 57.376 36.000 0.00 0.00 34.67 1.98
52 53 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
53 54 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
54 55 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
55 56 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
56 57 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
57 58 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
58 59 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
59 60 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
60 61 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
61 62 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
62 63 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
63 64 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
64 65 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
65 66 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
66 67 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
67 68 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
68 69 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
69 70 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
70 71 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
71 72 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
75 76 9.586435 CTCAAAATGCATCTATATACATCCGTA 57.414 33.333 0.00 0.00 0.00 4.02
76 77 8.097038 ACTCAAAATGCATCTATATACATCCGT 58.903 33.333 0.00 0.00 0.00 4.69
77 78 8.385858 CACTCAAAATGCATCTATATACATCCG 58.614 37.037 0.00 0.00 0.00 4.18
78 79 9.224267 ACACTCAAAATGCATCTATATACATCC 57.776 33.333 0.00 0.00 0.00 3.51
86 87 8.834465 GTGAATCTACACTCAAAATGCATCTAT 58.166 33.333 0.00 0.00 37.73 1.98
87 88 8.043113 AGTGAATCTACACTCAAAATGCATCTA 58.957 33.333 0.00 0.00 46.36 1.98
88 89 6.883217 AGTGAATCTACACTCAAAATGCATCT 59.117 34.615 0.00 0.00 46.36 2.90
89 90 7.081526 AGTGAATCTACACTCAAAATGCATC 57.918 36.000 0.00 0.00 46.36 3.91
101 102 5.948992 AGCAAAAAGGAGTGAATCTACAC 57.051 39.130 0.00 0.00 40.60 2.90
102 103 5.179368 CGAAGCAAAAAGGAGTGAATCTACA 59.821 40.000 0.00 0.00 0.00 2.74
103 104 5.179555 ACGAAGCAAAAAGGAGTGAATCTAC 59.820 40.000 0.00 0.00 0.00 2.59
104 105 5.305585 ACGAAGCAAAAAGGAGTGAATCTA 58.694 37.500 0.00 0.00 0.00 1.98
105 106 4.137543 ACGAAGCAAAAAGGAGTGAATCT 58.862 39.130 0.00 0.00 0.00 2.40
106 107 4.489679 ACGAAGCAAAAAGGAGTGAATC 57.510 40.909 0.00 0.00 0.00 2.52
107 108 5.473504 ACATACGAAGCAAAAAGGAGTGAAT 59.526 36.000 0.00 0.00 0.00 2.57
108 109 4.819630 ACATACGAAGCAAAAAGGAGTGAA 59.180 37.500 0.00 0.00 0.00 3.18
109 110 4.385825 ACATACGAAGCAAAAAGGAGTGA 58.614 39.130 0.00 0.00 0.00 3.41
110 111 4.749245 ACATACGAAGCAAAAAGGAGTG 57.251 40.909 0.00 0.00 0.00 3.51
111 112 5.548406 ACTACATACGAAGCAAAAAGGAGT 58.452 37.500 0.00 0.00 0.00 3.85
112 113 5.869888 AGACTACATACGAAGCAAAAAGGAG 59.130 40.000 0.00 0.00 0.00 3.69
113 114 5.790593 AGACTACATACGAAGCAAAAAGGA 58.209 37.500 0.00 0.00 0.00 3.36
114 115 7.772332 ATAGACTACATACGAAGCAAAAAGG 57.228 36.000 0.00 0.00 0.00 3.11
146 147 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
147 148 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
148 149 8.579006 TCGTTCCTAAATGTAAGTCTTTGTAGA 58.421 33.333 0.00 0.00 0.00 2.59
149 150 8.752766 TCGTTCCTAAATGTAAGTCTTTGTAG 57.247 34.615 0.00 0.00 0.00 2.74
150 151 9.199982 CTTCGTTCCTAAATGTAAGTCTTTGTA 57.800 33.333 0.00 0.00 0.00 2.41
151 152 7.172703 CCTTCGTTCCTAAATGTAAGTCTTTGT 59.827 37.037 0.00 0.00 0.00 2.83
152 153 7.386848 TCCTTCGTTCCTAAATGTAAGTCTTTG 59.613 37.037 0.00 0.00 0.00 2.77
153 154 7.447594 TCCTTCGTTCCTAAATGTAAGTCTTT 58.552 34.615 0.00 0.00 0.00 2.52
154 155 7.001099 TCCTTCGTTCCTAAATGTAAGTCTT 57.999 36.000 0.00 0.00 0.00 3.01
155 156 6.600882 TCCTTCGTTCCTAAATGTAAGTCT 57.399 37.500 0.00 0.00 0.00 3.24
156 157 6.872547 ACTTCCTTCGTTCCTAAATGTAAGTC 59.127 38.462 0.00 0.00 0.00 3.01
157 158 6.766429 ACTTCCTTCGTTCCTAAATGTAAGT 58.234 36.000 0.00 0.00 0.00 2.24
158 159 8.943909 ATACTTCCTTCGTTCCTAAATGTAAG 57.056 34.615 0.00 0.00 0.00 2.34
159 160 9.807649 GTATACTTCCTTCGTTCCTAAATGTAA 57.192 33.333 0.00 0.00 0.00 2.41
160 161 9.193806 AGTATACTTCCTTCGTTCCTAAATGTA 57.806 33.333 0.00 0.00 0.00 2.29
161 162 8.075761 AGTATACTTCCTTCGTTCCTAAATGT 57.924 34.615 0.00 0.00 0.00 2.71
162 163 9.460906 GTAGTATACTTCCTTCGTTCCTAAATG 57.539 37.037 11.40 0.00 38.91 2.32
203 204 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
204 205 9.706691 TGTTCCTAAATGTAAGTCTTTGTAGAG 57.293 33.333 0.00 0.00 0.00 2.43
205 206 9.706691 CTGTTCCTAAATGTAAGTCTTTGTAGA 57.293 33.333 0.00 0.00 0.00 2.59
206 207 9.706691 TCTGTTCCTAAATGTAAGTCTTTGTAG 57.293 33.333 0.00 0.00 0.00 2.74
207 208 9.706691 CTCTGTTCCTAAATGTAAGTCTTTGTA 57.293 33.333 0.00 0.00 0.00 2.41
208 209 7.661847 CCTCTGTTCCTAAATGTAAGTCTTTGT 59.338 37.037 0.00 0.00 0.00 2.83
209 210 7.878127 TCCTCTGTTCCTAAATGTAAGTCTTTG 59.122 37.037 0.00 0.00 0.00 2.77
210 211 7.974504 TCCTCTGTTCCTAAATGTAAGTCTTT 58.025 34.615 0.00 0.00 0.00 2.52
211 212 7.554959 TCCTCTGTTCCTAAATGTAAGTCTT 57.445 36.000 0.00 0.00 0.00 3.01
212 213 7.235812 ACTTCCTCTGTTCCTAAATGTAAGTCT 59.764 37.037 0.00 0.00 0.00 3.24
213 214 7.387643 ACTTCCTCTGTTCCTAAATGTAAGTC 58.612 38.462 0.00 0.00 0.00 3.01
214 215 7.317722 ACTTCCTCTGTTCCTAAATGTAAGT 57.682 36.000 0.00 0.00 0.00 2.24
217 218 9.710818 AGTATACTTCCTCTGTTCCTAAATGTA 57.289 33.333 0.00 0.00 0.00 2.29
218 219 8.611051 AGTATACTTCCTCTGTTCCTAAATGT 57.389 34.615 0.00 0.00 0.00 2.71
219 220 9.968870 GTAGTATACTTCCTCTGTTCCTAAATG 57.031 37.037 11.40 0.00 38.91 2.32
284 285 3.957497 ACCAAAAGGTTGTTACTGCATCA 59.043 39.130 0.00 0.00 32.40 3.07
286 287 3.069443 CCACCAAAAGGTTGTTACTGCAT 59.931 43.478 0.00 0.00 32.40 3.96
305 333 7.626452 GCCAAATACTTTCATACAGAGAACCAC 60.626 40.741 0.00 0.00 0.00 4.16
344 372 9.940166 GAATTTTGTTCAAGCTGAAATGATTTT 57.060 25.926 0.00 0.00 38.22 1.82
405 444 4.379339 TCCTTTTATTTAATGGCGTGGC 57.621 40.909 0.00 0.00 32.43 5.01
406 445 6.530181 GTCTTTCCTTTTATTTAATGGCGTGG 59.470 38.462 0.00 0.00 32.43 4.94
407 446 7.087639 TGTCTTTCCTTTTATTTAATGGCGTG 58.912 34.615 0.00 0.00 32.43 5.34
408 447 7.222000 TGTCTTTCCTTTTATTTAATGGCGT 57.778 32.000 0.00 0.00 32.43 5.68
409 448 8.527567 TTTGTCTTTCCTTTTATTTAATGGCG 57.472 30.769 0.00 0.00 32.43 5.69
410 449 8.935844 CCTTTGTCTTTCCTTTTATTTAATGGC 58.064 33.333 0.00 0.00 32.43 4.40
411 450 8.935844 GCCTTTGTCTTTCCTTTTATTTAATGG 58.064 33.333 0.00 0.00 33.41 3.16
412 451 8.935844 GGCCTTTGTCTTTCCTTTTATTTAATG 58.064 33.333 0.00 0.00 0.00 1.90
413 452 8.655901 TGGCCTTTGTCTTTCCTTTTATTTAAT 58.344 29.630 3.32 0.00 0.00 1.40
414 453 7.929245 GTGGCCTTTGTCTTTCCTTTTATTTAA 59.071 33.333 3.32 0.00 0.00 1.52
415 454 7.438564 GTGGCCTTTGTCTTTCCTTTTATTTA 58.561 34.615 3.32 0.00 0.00 1.40
463 502 3.678951 GAGTGAGCAGAGGCCAGCC 62.679 68.421 5.01 0.00 42.56 4.85
482 521 0.699577 TGGGACTTTGGGGAGGTTGA 60.700 55.000 0.00 0.00 0.00 3.18
504 543 2.490168 GGGAGGGAGGCTTGTTTGTTTA 60.490 50.000 0.00 0.00 0.00 2.01
515 554 0.492276 TTATAGGGAGGGAGGGAGGC 59.508 60.000 0.00 0.00 0.00 4.70
518 557 1.251136 TGCTTATAGGGAGGGAGGGA 58.749 55.000 0.00 0.00 0.00 4.20
520 559 1.700186 GGTTGCTTATAGGGAGGGAGG 59.300 57.143 0.00 0.00 0.00 4.30
521 560 1.344763 CGGTTGCTTATAGGGAGGGAG 59.655 57.143 0.00 0.00 0.00 4.30
522 561 1.420430 CGGTTGCTTATAGGGAGGGA 58.580 55.000 0.00 0.00 0.00 4.20
523 562 0.396811 CCGGTTGCTTATAGGGAGGG 59.603 60.000 0.00 0.00 0.00 4.30
560 599 4.929211 GCATAAGAATTTGGGAGCGTTTTT 59.071 37.500 0.00 0.00 0.00 1.94
565 604 2.223572 GGTGCATAAGAATTTGGGAGCG 60.224 50.000 0.00 0.00 0.00 5.03
567 606 3.633986 GAGGGTGCATAAGAATTTGGGAG 59.366 47.826 0.00 0.00 0.00 4.30
579 618 1.686325 GAGAAGGGCGAGGGTGCATA 61.686 60.000 0.00 0.00 36.28 3.14
619 659 2.530177 CTTCTGCTGAACGAAGCGATA 58.470 47.619 1.33 0.00 46.65 2.92
629 669 1.426251 TTGCCTCCCCTTCTGCTGAA 61.426 55.000 5.85 5.85 0.00 3.02
633 673 0.613012 ATGTTTGCCTCCCCTTCTGC 60.613 55.000 0.00 0.00 0.00 4.26
654 694 4.060038 CTGGCGATTTTAGAAGCTAGGA 57.940 45.455 0.00 0.00 35.08 2.94
667 712 2.206576 AAGCTCTTTTCCTGGCGATT 57.793 45.000 0.00 0.00 0.00 3.34
668 713 2.911484 CTAAGCTCTTTTCCTGGCGAT 58.089 47.619 0.00 0.00 0.00 4.58
850 902 4.090588 CTTAGGCCGGCCGTCCAA 62.091 66.667 38.88 27.53 41.95 3.53
866 930 0.343372 TCTGGCTCTTATCCACCCCT 59.657 55.000 0.00 0.00 0.00 4.79
870 934 3.696306 GCCTCTGGCTCTTATCCAC 57.304 57.895 0.73 0.00 46.69 4.02
883 947 2.269241 GCCGGTAGCAAAGCCTCT 59.731 61.111 1.90 0.00 42.97 3.69
914 978 1.202758 ACCAAATGAGGCGAAGTGACA 60.203 47.619 0.00 0.00 0.00 3.58
915 979 1.197721 CACCAAATGAGGCGAAGTGAC 59.802 52.381 0.00 0.00 0.00 3.67
917 981 0.523072 CCACCAAATGAGGCGAAGTG 59.477 55.000 0.00 0.00 0.00 3.16
918 982 0.110486 ACCACCAAATGAGGCGAAGT 59.890 50.000 0.00 0.00 0.00 3.01
920 984 0.400213 AGACCACCAAATGAGGCGAA 59.600 50.000 0.00 0.00 0.00 4.70
921 985 0.036388 GAGACCACCAAATGAGGCGA 60.036 55.000 0.00 0.00 0.00 5.54
923 987 0.329596 AGGAGACCACCAAATGAGGC 59.670 55.000 0.00 0.00 0.00 4.70
928 992 2.192263 GGAGAGAGGAGACCACCAAAT 58.808 52.381 0.00 0.00 0.00 2.32
929 993 1.150135 AGGAGAGAGGAGACCACCAAA 59.850 52.381 0.00 0.00 0.00 3.28
930 994 0.787084 AGGAGAGAGGAGACCACCAA 59.213 55.000 0.00 0.00 0.00 3.67
931 995 0.787084 AAGGAGAGAGGAGACCACCA 59.213 55.000 0.00 0.00 0.00 4.17
932 996 1.552792 CAAAGGAGAGAGGAGACCACC 59.447 57.143 0.00 0.00 0.00 4.61
933 997 2.495669 CTCAAAGGAGAGAGGAGACCAC 59.504 54.545 0.00 0.00 44.26 4.16
934 998 2.813907 CTCAAAGGAGAGAGGAGACCA 58.186 52.381 0.00 0.00 44.26 4.02
935 999 1.480545 GCTCAAAGGAGAGAGGAGACC 59.519 57.143 0.00 0.00 44.26 3.85
963 1027 2.983592 GGACACCACCGCCAAAGG 60.984 66.667 0.00 0.00 37.30 3.11
964 1028 1.966451 GAGGACACCACCGCCAAAG 60.966 63.158 0.00 0.00 34.73 2.77
965 1029 2.112297 GAGGACACCACCGCCAAA 59.888 61.111 0.00 0.00 34.73 3.28
966 1030 2.847234 AGAGGACACCACCGCCAA 60.847 61.111 0.00 0.00 34.73 4.52
967 1031 3.625897 CAGAGGACACCACCGCCA 61.626 66.667 0.00 0.00 34.73 5.69
969 1033 3.537206 AAGCAGAGGACACCACCGC 62.537 63.158 0.00 0.00 34.73 5.68
970 1034 1.669115 CAAGCAGAGGACACCACCG 60.669 63.158 0.00 0.00 34.73 4.94
1080 1144 3.260632 TGCTTCAGTCAATACCAGCAGTA 59.739 43.478 0.00 0.00 31.86 2.74
1105 1172 8.693542 AAATTGTGTTTTTCAGAAGACAGAAG 57.306 30.769 13.31 0.00 36.84 2.85
1106 1173 9.139174 GAAAATTGTGTTTTTCAGAAGACAGAA 57.861 29.630 11.36 11.36 42.51 3.02
1122 1189 4.742438 AACGCTACGATGAAAATTGTGT 57.258 36.364 0.00 0.00 0.00 3.72
1125 1192 5.851177 AGACAAAACGCTACGATGAAAATTG 59.149 36.000 0.00 0.00 0.00 2.32
1127 1194 5.607119 AGACAAAACGCTACGATGAAAAT 57.393 34.783 0.00 0.00 0.00 1.82
1131 1198 4.430137 ACTAGACAAAACGCTACGATGA 57.570 40.909 0.00 0.00 0.00 2.92
1162 1232 6.863645 GCGACATATAAAGAGAAGATGTAGCA 59.136 38.462 11.78 0.00 43.97 3.49
1163 1233 7.087639 AGCGACATATAAAGAGAAGATGTAGC 58.912 38.462 9.48 9.48 44.50 3.58
1165 1235 8.851145 AGAAGCGACATATAAAGAGAAGATGTA 58.149 33.333 0.00 0.00 31.03 2.29
1167 1237 8.486383 CAAGAAGCGACATATAAAGAGAAGATG 58.514 37.037 0.00 0.00 0.00 2.90
1168 1238 7.655328 CCAAGAAGCGACATATAAAGAGAAGAT 59.345 37.037 0.00 0.00 0.00 2.40
1170 1240 6.758886 ACCAAGAAGCGACATATAAAGAGAAG 59.241 38.462 0.00 0.00 0.00 2.85
1171 1241 6.535150 CACCAAGAAGCGACATATAAAGAGAA 59.465 38.462 0.00 0.00 0.00 2.87
1172 1242 6.042777 CACCAAGAAGCGACATATAAAGAGA 58.957 40.000 0.00 0.00 0.00 3.10
1173 1243 6.042777 TCACCAAGAAGCGACATATAAAGAG 58.957 40.000 0.00 0.00 0.00 2.85
1174 1244 5.972935 TCACCAAGAAGCGACATATAAAGA 58.027 37.500 0.00 0.00 0.00 2.52
1175 1245 6.662414 TTCACCAAGAAGCGACATATAAAG 57.338 37.500 0.00 0.00 0.00 1.85
1176 1246 7.624360 AATTCACCAAGAAGCGACATATAAA 57.376 32.000 0.00 0.00 40.15 1.40
1177 1247 7.120579 ACAAATTCACCAAGAAGCGACATATAA 59.879 33.333 0.00 0.00 40.15 0.98
1178 1248 6.597672 ACAAATTCACCAAGAAGCGACATATA 59.402 34.615 0.00 0.00 40.15 0.86
1179 1249 5.415701 ACAAATTCACCAAGAAGCGACATAT 59.584 36.000 0.00 0.00 40.15 1.78
1180 1250 4.759693 ACAAATTCACCAAGAAGCGACATA 59.240 37.500 0.00 0.00 40.15 2.29
1181 1251 3.569701 ACAAATTCACCAAGAAGCGACAT 59.430 39.130 0.00 0.00 40.15 3.06
1182 1252 2.948979 ACAAATTCACCAAGAAGCGACA 59.051 40.909 0.00 0.00 40.15 4.35
1183 1253 3.626028 ACAAATTCACCAAGAAGCGAC 57.374 42.857 0.00 0.00 40.15 5.19
1184 1254 3.882888 AGAACAAATTCACCAAGAAGCGA 59.117 39.130 0.00 0.00 40.15 4.93
1185 1255 4.228912 AGAACAAATTCACCAAGAAGCG 57.771 40.909 0.00 0.00 40.15 4.68
1186 1256 4.209911 GCAAGAACAAATTCACCAAGAAGC 59.790 41.667 0.00 0.00 40.15 3.86
1187 1257 5.461078 CAGCAAGAACAAATTCACCAAGAAG 59.539 40.000 0.00 0.00 40.15 2.85
1188 1258 5.105392 ACAGCAAGAACAAATTCACCAAGAA 60.105 36.000 0.00 0.00 41.28 2.52
1192 1262 5.278907 CCATACAGCAAGAACAAATTCACCA 60.279 40.000 0.00 0.00 37.29 4.17
1207 1277 0.988063 TACCACAAGCCCATACAGCA 59.012 50.000 0.00 0.00 0.00 4.41
1213 1283 3.456380 ACTGAATTACCACAAGCCCAT 57.544 42.857 0.00 0.00 0.00 4.00
1216 1286 2.812011 ACGAACTGAATTACCACAAGCC 59.188 45.455 0.00 0.00 0.00 4.35
1232 1302 4.732285 TTCTGAAATGAAGCAGACGAAC 57.268 40.909 0.00 0.00 40.57 3.95
1237 1307 8.017373 CGAACTTTTATTCTGAAATGAAGCAGA 58.983 33.333 0.00 0.00 39.24 4.26
1238 1308 7.272084 CCGAACTTTTATTCTGAAATGAAGCAG 59.728 37.037 0.00 0.00 0.00 4.24
1254 1324 2.611224 GGAAGAGACGGCCGAACTTTTA 60.611 50.000 35.90 0.00 0.00 1.52
1259 1329 1.446272 CTGGAAGAGACGGCCGAAC 60.446 63.158 35.90 24.39 34.07 3.95
1266 1337 3.607741 TCACCTAGTACTGGAAGAGACG 58.392 50.000 7.98 0.00 37.43 4.18
1267 1338 5.979288 TTTCACCTAGTACTGGAAGAGAC 57.021 43.478 7.98 0.00 37.43 3.36
1294 1370 1.472480 ACACAGTGCACTTCCAACAAC 59.528 47.619 18.94 0.00 0.00 3.32
1304 1380 2.919666 ACACTCAAAACACAGTGCAC 57.080 45.000 9.40 9.40 43.37 4.57
1317 1393 5.362717 TCTCAGAGGACACTTAAAACACTCA 59.637 40.000 0.00 0.00 0.00 3.41
1318 1394 5.844004 TCTCAGAGGACACTTAAAACACTC 58.156 41.667 0.00 0.00 0.00 3.51
1319 1395 5.871396 TCTCAGAGGACACTTAAAACACT 57.129 39.130 0.00 0.00 0.00 3.55
1320 1396 7.012421 ACAAATCTCAGAGGACACTTAAAACAC 59.988 37.037 0.00 0.00 0.00 3.32
1321 1397 7.012327 CACAAATCTCAGAGGACACTTAAAACA 59.988 37.037 0.00 0.00 0.00 2.83
1322 1398 7.226720 TCACAAATCTCAGAGGACACTTAAAAC 59.773 37.037 0.00 0.00 0.00 2.43
1323 1399 7.226720 GTCACAAATCTCAGAGGACACTTAAAA 59.773 37.037 0.00 0.00 0.00 1.52
1324 1400 6.706270 GTCACAAATCTCAGAGGACACTTAAA 59.294 38.462 0.00 0.00 0.00 1.52
1325 1401 6.042093 AGTCACAAATCTCAGAGGACACTTAA 59.958 38.462 0.00 0.00 0.00 1.85
1326 1402 5.540337 AGTCACAAATCTCAGAGGACACTTA 59.460 40.000 0.00 0.00 0.00 2.24
1327 1403 4.346418 AGTCACAAATCTCAGAGGACACTT 59.654 41.667 0.00 0.00 0.00 3.16
1339 1415 6.176183 CACCCAATTCTCTAGTCACAAATCT 58.824 40.000 0.00 0.00 0.00 2.40
1434 1512 6.861055 ACGCAATACTGGAATAAAAAGTTGTG 59.139 34.615 0.00 0.00 0.00 3.33
1449 1527 3.544834 GCTCATGCTGTTACGCAATACTG 60.545 47.826 6.06 1.52 44.06 2.74
1466 1544 3.827008 ACACATGGAATACTCGCTCAT 57.173 42.857 0.00 0.00 0.00 2.90
1491 1569 9.625747 AGTTTATGAGGGAGTACTACTTACTAC 57.374 37.037 4.77 0.00 41.48 2.73
1554 1632 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
1555 1633 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
1556 1634 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
1557 1635 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
1558 1636 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1559 1637 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1560 1638 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
1561 1639 9.294614 ACTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
1562 1640 9.646522 AACTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
1563 1641 9.071276 CAACTACTCCCTCCGTAAACTAATATA 57.929 37.037 0.00 0.00 0.00 0.86
1564 1642 7.562821 ACAACTACTCCCTCCGTAAACTAATAT 59.437 37.037 0.00 0.00 0.00 1.28
1565 1643 6.891908 ACAACTACTCCCTCCGTAAACTAATA 59.108 38.462 0.00 0.00 0.00 0.98
1566 1644 5.718607 ACAACTACTCCCTCCGTAAACTAAT 59.281 40.000 0.00 0.00 0.00 1.73
1567 1645 5.079643 ACAACTACTCCCTCCGTAAACTAA 58.920 41.667 0.00 0.00 0.00 2.24
1568 1646 4.666512 ACAACTACTCCCTCCGTAAACTA 58.333 43.478 0.00 0.00 0.00 2.24
1569 1647 3.504375 ACAACTACTCCCTCCGTAAACT 58.496 45.455 0.00 0.00 0.00 2.66
1570 1648 3.509184 AGACAACTACTCCCTCCGTAAAC 59.491 47.826 0.00 0.00 0.00 2.01
1571 1649 3.771216 AGACAACTACTCCCTCCGTAAA 58.229 45.455 0.00 0.00 0.00 2.01
1572 1650 3.446442 AGACAACTACTCCCTCCGTAA 57.554 47.619 0.00 0.00 0.00 3.18
1573 1651 3.009916 AGAAGACAACTACTCCCTCCGTA 59.990 47.826 0.00 0.00 0.00 4.02
1574 1652 2.169330 GAAGACAACTACTCCCTCCGT 58.831 52.381 0.00 0.00 0.00 4.69
1575 1653 2.448453 AGAAGACAACTACTCCCTCCG 58.552 52.381 0.00 0.00 0.00 4.63
1576 1654 4.893829 AAAGAAGACAACTACTCCCTCC 57.106 45.455 0.00 0.00 0.00 4.30
1660 1738 3.185391 GTGACAAAAGAGAGAAGCTTCCG 59.815 47.826 22.81 4.35 0.00 4.30
1788 1874 7.538678 GCATTACAGGTGAAAAACAGAGTATTG 59.461 37.037 0.00 0.00 0.00 1.90
1883 1969 6.564709 TCATTACTATTGCCTGATTCATGC 57.435 37.500 6.95 6.95 0.00 4.06
1973 2061 4.018490 TGCATGAGTAATGGTGCTTCAAT 58.982 39.130 0.00 0.00 38.37 2.57
2255 2354 6.149308 CAGACAACCAACTAATTAGTGCATCA 59.851 38.462 18.70 0.00 36.50 3.07
2257 2356 6.003950 ACAGACAACCAACTAATTAGTGCAT 58.996 36.000 18.70 4.61 36.50 3.96
2258 2357 5.373222 ACAGACAACCAACTAATTAGTGCA 58.627 37.500 18.70 0.00 36.50 4.57
2259 2358 5.941948 ACAGACAACCAACTAATTAGTGC 57.058 39.130 18.70 3.40 36.50 4.40
2268 2367 2.024414 GAAGCCAACAGACAACCAACT 58.976 47.619 0.00 0.00 0.00 3.16
2622 3131 7.175347 TCATTATGCTCACTTAACTCAGAGT 57.825 36.000 0.00 0.00 0.00 3.24
2652 3161 2.676839 GCTGGACTGTTGACATGATCAG 59.323 50.000 0.00 4.81 38.99 2.90
2770 3282 6.317857 GCAACTAAAGGTTTCAGATTAGCTG 58.682 40.000 0.00 0.00 40.00 4.24
2826 3338 5.163622 GCAGCTGCCAGTTCTATTTATTCAA 60.164 40.000 28.76 0.00 34.31 2.69
2953 3466 3.775316 ACTATGGCAGTGGCTAACTTAGT 59.225 43.478 18.53 12.84 36.83 2.24
2972 3485 6.986231 CAGTTGATACAGATTACATGGCACTA 59.014 38.462 0.00 0.00 0.00 2.74
2973 3486 5.819379 CAGTTGATACAGATTACATGGCACT 59.181 40.000 0.00 0.00 0.00 4.40
2974 3487 5.586243 ACAGTTGATACAGATTACATGGCAC 59.414 40.000 0.00 0.00 0.00 5.01
2975 3488 5.744171 ACAGTTGATACAGATTACATGGCA 58.256 37.500 0.00 0.00 0.00 4.92
2976 3489 6.051717 AGACAGTTGATACAGATTACATGGC 58.948 40.000 0.00 0.00 0.00 4.40
2977 3490 7.869937 CCTAGACAGTTGATACAGATTACATGG 59.130 40.741 0.00 0.00 0.00 3.66
2978 3491 7.869937 CCCTAGACAGTTGATACAGATTACATG 59.130 40.741 0.00 0.00 0.00 3.21
2979 3492 7.472100 GCCCTAGACAGTTGATACAGATTACAT 60.472 40.741 0.00 0.00 0.00 2.29
2986 3499 3.739519 GCAGCCCTAGACAGTTGATACAG 60.740 52.174 0.00 0.00 0.00 2.74
3132 3645 3.140325 TCAATTCCAAGGACTCCACAC 57.860 47.619 0.00 0.00 0.00 3.82
3350 3873 6.480320 AGGTAATCGATTGCTTGAGAATGTAC 59.520 38.462 22.86 7.99 0.00 2.90
3433 3956 4.560128 TGAATTGTCTCTTCTCCACTTCG 58.440 43.478 0.00 0.00 0.00 3.79
3881 4469 2.484594 GGAGCTCAGAAGGGTCAATAGC 60.485 54.545 17.19 0.00 33.45 2.97
4044 4632 7.609960 TGAGCATTGTAATTCCAAAGCAAATA 58.390 30.769 12.55 0.00 40.49 1.40
4121 4709 7.573968 ACCACAGAATTATCTAGAAAATGCC 57.426 36.000 0.00 0.00 33.50 4.40
4159 4747 5.277011 GCAAAAGAGCTTTGGTGTCATTTTC 60.277 40.000 0.00 0.00 44.03 2.29
4265 4853 4.706962 AGCATCAAAACCTACCTGGAATTC 59.293 41.667 0.00 0.00 39.71 2.17
4411 5006 4.280929 TCAGATTGTAGACATACCCCATCG 59.719 45.833 0.00 0.00 0.00 3.84
4478 5073 6.103997 GTCCCTGTCAAGTCATTTATACGAA 58.896 40.000 0.00 0.00 0.00 3.85
4486 5081 1.971357 AGTCGTCCCTGTCAAGTCATT 59.029 47.619 0.00 0.00 0.00 2.57
4491 5086 4.035792 CAGATACTAGTCGTCCCTGTCAAG 59.964 50.000 0.00 0.00 0.00 3.02
4649 5245 5.593679 ATTTCTTCTGATCCTGCAAATGG 57.406 39.130 0.00 0.00 0.00 3.16
4650 5246 5.810587 CCAATTTCTTCTGATCCTGCAAATG 59.189 40.000 0.00 0.00 0.00 2.32
4736 5332 3.820557 TGTCTTTCTGGTTAAGCTGCTT 58.179 40.909 19.93 19.93 0.00 3.91
4863 5459 7.450634 ACCAAAGTATCTATTATAGCGACTGGA 59.549 37.037 13.40 0.00 0.00 3.86
4865 5461 8.297426 TCACCAAAGTATCTATTATAGCGACTG 58.703 37.037 6.63 0.13 0.00 3.51
4919 5515 2.699954 AGTGAATCATCGCCGAAGTTT 58.300 42.857 0.00 0.00 36.72 2.66
4943 5539 9.295825 TCAGAACCACTAATTGATGTAAATGTT 57.704 29.630 0.00 0.00 0.00 2.71
4996 5592 6.775142 TGAAGAGATTGAGATAGTACCAGGAG 59.225 42.308 0.00 0.00 0.00 3.69
5029 5625 5.947228 TGCTTGAAGATTGTTGTTAGGAG 57.053 39.130 0.00 0.00 0.00 3.69
5031 5627 9.079833 CAAATATGCTTGAAGATTGTTGTTAGG 57.920 33.333 0.00 0.00 0.00 2.69
5094 5690 4.222588 CCCAATAGATTGACCTGGCAAAAA 59.777 41.667 3.76 0.00 40.14 1.94
5100 5696 3.931907 TGACCCAATAGATTGACCTGG 57.068 47.619 3.76 0.00 40.14 4.45
5238 5834 2.021457 CGAAACCAAGTCAACCAACCT 58.979 47.619 0.00 0.00 0.00 3.50
5306 5902 5.577164 CCTAAACCACTCACTACATCTTTCG 59.423 44.000 0.00 0.00 0.00 3.46
5542 6145 1.837533 ATGGGAAGGTGGGAGGGAGA 61.838 60.000 0.00 0.00 0.00 3.71
5555 6158 2.491693 GCGGAATTGAGAAACATGGGAA 59.508 45.455 0.00 0.00 0.00 3.97
5645 6248 3.915437 ATTTGCTTCCGTCATTTCGTT 57.085 38.095 0.00 0.00 0.00 3.85
5650 6253 6.757897 TCTAATCAATTTGCTTCCGTCATT 57.242 33.333 0.00 0.00 0.00 2.57
5701 6304 5.771666 ACCAAACATGACACAGAATCTGATT 59.228 36.000 18.20 1.81 35.18 2.57
5721 6324 0.327924 AACTCATGCGATGGGACCAA 59.672 50.000 0.00 0.00 34.00 3.67
5732 6335 6.580041 CACTTCTTTATTGACACAACTCATGC 59.420 38.462 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.