Multiple sequence alignment - TraesCS5B01G230600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G230600 chr5B 100.000 5546 0 0 1 5546 407242811 407237266 0.000000e+00 10242.0
1 TraesCS5B01G230600 chr5B 80.566 1379 207 40 968 2323 525447580 525448920 0.000000e+00 1005.0
2 TraesCS5B01G230600 chr5B 89.817 766 73 5 59 823 479505001 479505762 0.000000e+00 977.0
3 TraesCS5B01G230600 chr5B 76.485 1263 209 57 998 2222 526574723 526575935 1.710000e-169 606.0
4 TraesCS5B01G230600 chr5B 81.739 690 104 12 3529 4199 128850960 128850274 1.750000e-154 556.0
5 TraesCS5B01G230600 chr5B 82.841 542 74 10 969 1497 525452613 525453148 8.410000e-128 468.0
6 TraesCS5B01G230600 chr5B 82.069 435 54 16 1054 1478 526248330 526248750 3.180000e-92 350.0
7 TraesCS5B01G230600 chr5B 89.057 265 28 1 3481 3744 407238881 407238617 1.490000e-85 327.0
8 TraesCS5B01G230600 chr5B 87.454 271 33 1 3474 3744 663968831 663968562 1.500000e-80 311.0
9 TraesCS5B01G230600 chr5B 90.323 62 6 0 4955 5016 407237817 407237756 1.280000e-11 82.4
10 TraesCS5B01G230600 chr5B 90.323 62 6 0 4995 5056 407237857 407237796 1.280000e-11 82.4
11 TraesCS5B01G230600 chr5B 96.000 50 2 0 2171 2220 525833441 525833490 1.280000e-11 82.4
12 TraesCS5B01G230600 chr5B 96.000 50 2 0 2171 2220 525882547 525882596 1.280000e-11 82.4
13 TraesCS5B01G230600 chr5B 96.000 50 2 0 2171 2220 525936700 525936749 1.280000e-11 82.4
14 TraesCS5B01G230600 chr5D 95.198 1999 65 10 893 2882 344534210 344536186 0.000000e+00 3131.0
15 TraesCS5B01G230600 chr5D 91.533 2185 138 22 2895 5053 344536297 344538460 0.000000e+00 2966.0
16 TraesCS5B01G230600 chr5D 94.475 724 40 0 1 724 536867447 536866724 0.000000e+00 1116.0
17 TraesCS5B01G230600 chr5D 80.880 1386 204 38 961 2323 432781755 432783102 0.000000e+00 1035.0
18 TraesCS5B01G230600 chr5D 83.902 733 100 11 3481 4199 118011671 118012399 0.000000e+00 684.0
19 TraesCS5B01G230600 chr5D 85.179 614 43 22 4956 5546 344538403 344538991 2.230000e-163 586.0
20 TraesCS5B01G230600 chr5D 86.056 502 67 1 996 1497 432787109 432787607 2.270000e-148 536.0
21 TraesCS5B01G230600 chr5D 85.442 419 58 3 3745 4163 177659959 177660374 3.070000e-117 433.0
22 TraesCS5B01G230600 chr5D 87.072 263 34 0 3482 3744 129155364 129155102 1.170000e-76 298.0
23 TraesCS5B01G230600 chr5D 96.721 61 2 0 4956 5016 344538443 344538503 9.830000e-18 102.0
24 TraesCS5B01G230600 chr5D 94.828 58 3 0 4996 5053 344538363 344538420 2.130000e-14 91.6
25 TraesCS5B01G230600 chr5A 94.651 1832 65 10 853 2653 447547203 447545374 0.000000e+00 2809.0
26 TraesCS5B01G230600 chr5A 92.029 828 49 8 4200 5016 447544122 447543301 0.000000e+00 1147.0
27 TraesCS5B01G230600 chr5A 77.093 1266 199 50 998 2222 547612853 547614068 0.000000e+00 647.0
28 TraesCS5B01G230600 chr5A 83.744 406 30 15 3083 3480 447544495 447544118 8.840000e-93 351.0
29 TraesCS5B01G230600 chr5A 91.949 236 14 2 2648 2882 447545054 447544823 5.360000e-85 326.0
30 TraesCS5B01G230600 chr5A 88.679 265 22 5 3481 3744 161912576 161912319 3.220000e-82 316.0
31 TraesCS5B01G230600 chr5A 90.055 181 15 2 2897 3077 447544741 447544564 1.200000e-56 231.0
32 TraesCS5B01G230600 chr5A 82.171 258 20 15 4995 5245 447543363 447543125 1.220000e-46 198.0
33 TraesCS5B01G230600 chr5A 93.204 103 7 0 717 819 398446643 398446541 9.620000e-33 152.0
34 TraesCS5B01G230600 chr5A 78.899 218 20 7 5342 5544 447542583 447542377 2.100000e-24 124.0
35 TraesCS5B01G230600 chr7D 93.735 846 50 3 1 844 586687450 586688294 0.000000e+00 1266.0
36 TraesCS5B01G230600 chr6B 93.168 849 57 1 1 849 708393047 708392200 0.000000e+00 1245.0
37 TraesCS5B01G230600 chr6B 90.251 718 67 2 1 717 54148177 54147462 0.000000e+00 935.0
38 TraesCS5B01G230600 chr6B 76.736 1109 190 40 1262 2323 56316825 56315738 1.750000e-154 556.0
39 TraesCS5B01G230600 chr3A 92.951 837 52 6 1 834 357059032 357059864 0.000000e+00 1212.0
40 TraesCS5B01G230600 chr3A 81.286 700 100 14 3480 4178 259332022 259332691 6.320000e-149 538.0
41 TraesCS5B01G230600 chrUn 80.741 1376 205 36 968 2321 63282976 63281639 0.000000e+00 1018.0
42 TraesCS5B01G230600 chrUn 80.741 1376 205 36 968 2321 327299212 327297875 0.000000e+00 1018.0
43 TraesCS5B01G230600 chrUn 83.176 743 100 11 3481 4202 67791455 67792193 0.000000e+00 656.0
44 TraesCS5B01G230600 chr7B 89.974 758 70 6 91 844 678405803 678405048 0.000000e+00 974.0
45 TraesCS5B01G230600 chr7B 84.649 684 92 7 3481 4164 220876080 220875410 0.000000e+00 669.0
46 TraesCS5B01G230600 chr7B 87.692 260 31 1 3483 3741 446139446 446139705 9.030000e-78 302.0
47 TraesCS5B01G230600 chr2A 93.355 617 39 2 1 616 733098009 733098624 0.000000e+00 911.0
48 TraesCS5B01G230600 chr2A 90.047 211 19 2 639 848 733098604 733098813 7.080000e-69 272.0
49 TraesCS5B01G230600 chr2A 88.235 119 11 3 724 840 589542244 589542361 7.490000e-29 139.0
50 TraesCS5B01G230600 chr2B 87.933 721 77 9 1 717 95238721 95239435 0.000000e+00 841.0
51 TraesCS5B01G230600 chr6D 78.689 1342 225 37 998 2308 31479697 31481008 0.000000e+00 837.0
52 TraesCS5B01G230600 chr6A 78.238 1305 224 38 998 2269 31745506 31744229 0.000000e+00 782.0
53 TraesCS5B01G230600 chr3D 82.849 688 74 22 3482 4164 433419748 433420396 1.340000e-160 577.0
54 TraesCS5B01G230600 chr3D 79.837 734 105 16 3479 4199 543980839 543980136 3.860000e-136 496.0
55 TraesCS5B01G230600 chr3D 83.982 437 55 9 3481 3904 348132779 348133213 6.690000e-109 405.0
56 TraesCS5B01G230600 chr2D 83.865 502 66 8 3664 4164 158225857 158225370 1.090000e-126 464.0
57 TraesCS5B01G230600 chr2D 91.810 232 18 1 3481 3712 378038224 378038454 6.930000e-84 322.0
58 TraesCS5B01G230600 chr1D 88.189 127 13 2 724 849 462286144 462286269 3.460000e-32 150.0
59 TraesCS5B01G230600 chr1D 90.164 61 6 0 4140 4200 213224950 213225010 4.610000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G230600 chr5B 407237266 407242811 5545 True 10242.000000 10242 100.000000 1 5546 1 chr5B.!!$R2 5545
1 TraesCS5B01G230600 chr5B 479505001 479505762 761 False 977.000000 977 89.817000 59 823 1 chr5B.!!$F1 764
2 TraesCS5B01G230600 chr5B 525447580 525453148 5568 False 736.500000 1005 81.703500 968 2323 2 chr5B.!!$F7 1355
3 TraesCS5B01G230600 chr5B 526574723 526575935 1212 False 606.000000 606 76.485000 998 2222 1 chr5B.!!$F6 1224
4 TraesCS5B01G230600 chr5B 128850274 128850960 686 True 556.000000 556 81.739000 3529 4199 1 chr5B.!!$R1 670
5 TraesCS5B01G230600 chr5D 344534210 344538991 4781 False 1375.320000 3131 92.691800 893 5546 5 chr5D.!!$F5 4653
6 TraesCS5B01G230600 chr5D 536866724 536867447 723 True 1116.000000 1116 94.475000 1 724 1 chr5D.!!$R2 723
7 TraesCS5B01G230600 chr5D 432781755 432783102 1347 False 1035.000000 1035 80.880000 961 2323 1 chr5D.!!$F3 1362
8 TraesCS5B01G230600 chr5D 118011671 118012399 728 False 684.000000 684 83.902000 3481 4199 1 chr5D.!!$F1 718
9 TraesCS5B01G230600 chr5A 447542377 447547203 4826 True 740.857143 2809 87.642571 853 5544 7 chr5A.!!$R3 4691
10 TraesCS5B01G230600 chr5A 547612853 547614068 1215 False 647.000000 647 77.093000 998 2222 1 chr5A.!!$F1 1224
11 TraesCS5B01G230600 chr7D 586687450 586688294 844 False 1266.000000 1266 93.735000 1 844 1 chr7D.!!$F1 843
12 TraesCS5B01G230600 chr6B 708392200 708393047 847 True 1245.000000 1245 93.168000 1 849 1 chr6B.!!$R3 848
13 TraesCS5B01G230600 chr6B 54147462 54148177 715 True 935.000000 935 90.251000 1 717 1 chr6B.!!$R1 716
14 TraesCS5B01G230600 chr6B 56315738 56316825 1087 True 556.000000 556 76.736000 1262 2323 1 chr6B.!!$R2 1061
15 TraesCS5B01G230600 chr3A 357059032 357059864 832 False 1212.000000 1212 92.951000 1 834 1 chr3A.!!$F2 833
16 TraesCS5B01G230600 chr3A 259332022 259332691 669 False 538.000000 538 81.286000 3480 4178 1 chr3A.!!$F1 698
17 TraesCS5B01G230600 chrUn 63281639 63282976 1337 True 1018.000000 1018 80.741000 968 2321 1 chrUn.!!$R1 1353
18 TraesCS5B01G230600 chrUn 327297875 327299212 1337 True 1018.000000 1018 80.741000 968 2321 1 chrUn.!!$R2 1353
19 TraesCS5B01G230600 chrUn 67791455 67792193 738 False 656.000000 656 83.176000 3481 4202 1 chrUn.!!$F1 721
20 TraesCS5B01G230600 chr7B 678405048 678405803 755 True 974.000000 974 89.974000 91 844 1 chr7B.!!$R2 753
21 TraesCS5B01G230600 chr7B 220875410 220876080 670 True 669.000000 669 84.649000 3481 4164 1 chr7B.!!$R1 683
22 TraesCS5B01G230600 chr2A 733098009 733098813 804 False 591.500000 911 91.701000 1 848 2 chr2A.!!$F2 847
23 TraesCS5B01G230600 chr2B 95238721 95239435 714 False 841.000000 841 87.933000 1 717 1 chr2B.!!$F1 716
24 TraesCS5B01G230600 chr6D 31479697 31481008 1311 False 837.000000 837 78.689000 998 2308 1 chr6D.!!$F1 1310
25 TraesCS5B01G230600 chr6A 31744229 31745506 1277 True 782.000000 782 78.238000 998 2269 1 chr6A.!!$R1 1271
26 TraesCS5B01G230600 chr3D 433419748 433420396 648 False 577.000000 577 82.849000 3482 4164 1 chr3D.!!$F2 682
27 TraesCS5B01G230600 chr3D 543980136 543980839 703 True 496.000000 496 79.837000 3479 4199 1 chr3D.!!$R1 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 479 0.037590 AGTTGCAACCGCTGGGAATA 59.962 50.000 25.62 0.0 39.64 1.75 F
1531 1560 0.038166 TGAGGCCCACATTGTCTTCC 59.962 55.000 0.00 0.0 0.00 3.46 F
2043 2120 0.828022 TTGAGGCGGTTATCGATGGT 59.172 50.000 8.54 0.0 42.43 3.55 F
2891 3882 1.072965 GTCATCCATCCATCCTGGGTC 59.927 57.143 0.00 0.0 38.32 4.46 F
2892 3883 1.142936 CATCCATCCATCCTGGGTCA 58.857 55.000 0.00 0.0 38.32 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 1793 0.525668 CATAGGGTCGACTCGTGTGC 60.526 60.000 16.46 0.0 0.00 4.57 R
3280 4446 0.607217 TTGACCAGCATCACAGCCAG 60.607 55.000 0.00 0.0 34.23 4.85 R
3826 6199 1.002746 ACATGTGCCATGCCGTGTA 60.003 52.632 13.19 0.0 31.14 2.90 R
4092 7542 0.463654 TGCGCACTTTGTCCTCACTT 60.464 50.000 5.66 0.0 0.00 3.16 R
4703 8159 0.968405 ACATGCCCATTTCACACCAC 59.032 50.000 0.00 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
266 275 3.188159 TGTCAACGGTTGTAGCTTTCT 57.812 42.857 19.47 0.00 0.00 2.52
276 285 0.744414 GTAGCTTTCTGGCGATGGCA 60.744 55.000 1.01 0.00 42.47 4.92
462 472 2.594592 GTGGGAGTTGCAACCGCT 60.595 61.111 25.62 7.82 39.64 5.52
469 479 0.037590 AGTTGCAACCGCTGGGAATA 59.962 50.000 25.62 0.00 39.64 1.75
473 483 0.393808 GCAACCGCTGGGAATAGGAA 60.394 55.000 0.00 0.00 36.97 3.36
654 664 2.965147 GCTGCAACGATGGACGCAA 61.965 57.895 0.00 0.00 46.94 4.85
671 681 1.306141 AAGAGACGAGGATGGGGCA 60.306 57.895 0.00 0.00 0.00 5.36
750 761 2.100197 CTAGTCAACTCGGGTCCATCA 58.900 52.381 0.00 0.00 0.00 3.07
775 786 3.611674 TGGTTGCTCGCGAGTGGA 61.612 61.111 34.46 19.13 0.00 4.02
875 887 5.177696 AGTGCTATGCTACGCTTAAAATAGC 59.822 40.000 13.06 13.06 41.71 2.97
880 892 2.140717 CTACGCTTAAAATAGCCCGGG 58.859 52.381 19.09 19.09 37.90 5.73
886 898 0.250553 TAAAATAGCCCGGGCCATCG 60.251 55.000 41.72 5.08 43.17 3.84
1063 1089 0.887933 GGCGACATTCACCACCATTT 59.112 50.000 0.00 0.00 0.00 2.32
1383 1409 1.338136 CCCTCGGGTGGAAGCTACAT 61.338 60.000 0.00 0.00 0.00 2.29
1412 1438 4.883300 CGGCTACGTCGTCCTCGC 62.883 72.222 0.00 0.55 36.96 5.03
1531 1560 0.038166 TGAGGCCCACATTGTCTTCC 59.962 55.000 0.00 0.00 0.00 3.46
1625 1654 1.068472 CGTAGCTGTCTTCTCAACGGT 60.068 52.381 0.00 0.00 0.00 4.83
1734 1793 5.447818 GCTGAATGGATTCGTTTACTGGAAG 60.448 44.000 0.00 0.00 39.62 3.46
1792 1851 2.600867 GCGACAGTGCAATTCTCTAGAC 59.399 50.000 0.00 0.00 34.15 2.59
1938 2003 1.339438 TGGCTTTGGAGAGCTGATGAC 60.339 52.381 0.00 0.00 42.32 3.06
1948 2013 1.929836 GAGCTGATGACGATGGTGTTC 59.070 52.381 0.00 0.00 0.00 3.18
2020 2097 3.198635 CACTAAGGATGATCCCACAGTGT 59.801 47.826 20.87 0.00 37.19 3.55
2043 2120 0.828022 TTGAGGCGGTTATCGATGGT 59.172 50.000 8.54 0.00 42.43 3.55
2085 2179 9.557061 ACTAAGTATGATGAGTATACTGACGAA 57.443 33.333 10.90 0.00 39.71 3.85
2087 2181 6.889494 AGTATGATGAGTATACTGACGAACG 58.111 40.000 10.90 0.00 39.28 3.95
2093 2187 4.330894 TGAGTATACTGACGAACGTACTGG 59.669 45.833 10.90 0.00 0.00 4.00
2268 2377 7.235812 AGTCTGTAGAAGTTTGGTCCTTAGATT 59.764 37.037 0.00 0.00 0.00 2.40
2383 2523 6.935167 TGATTGCAAGTCTTGATACAGTAGA 58.065 36.000 16.99 0.00 0.00 2.59
2520 3144 2.484651 GGGAAAAGCGGAAAGAGAGTTC 59.515 50.000 0.00 0.00 0.00 3.01
2613 3237 7.904558 TCTCTTTGGACTGATCATACTGTAT 57.095 36.000 0.00 0.00 0.00 2.29
2674 3623 4.385358 ACTTAAGTTTTTGGTGCTGTGG 57.615 40.909 1.12 0.00 0.00 4.17
2689 3638 2.287788 GCTGTGGAAAGGTCATGTGTTG 60.288 50.000 0.00 0.00 0.00 3.33
2736 3685 5.479306 GAAACAGTGGAGACATAAGCTACA 58.521 41.667 0.00 0.00 46.14 2.74
2741 3690 6.264292 ACAGTGGAGACATAAGCTACATCTAG 59.736 42.308 0.00 0.00 46.14 2.43
2742 3691 5.242838 AGTGGAGACATAAGCTACATCTAGC 59.757 44.000 0.00 0.00 46.14 3.42
2851 3801 1.210722 GGATTGAGTTCCAGACCCTCC 59.789 57.143 0.00 0.00 35.72 4.30
2882 3873 4.409901 TCAGCTTGAATAGTCATCCATCCA 59.590 41.667 0.00 0.00 32.48 3.41
2883 3874 5.072736 TCAGCTTGAATAGTCATCCATCCAT 59.927 40.000 0.00 0.00 32.48 3.41
2884 3875 5.411977 CAGCTTGAATAGTCATCCATCCATC 59.588 44.000 0.00 0.00 32.48 3.51
2885 3876 4.699257 GCTTGAATAGTCATCCATCCATCC 59.301 45.833 0.00 0.00 32.48 3.51
2887 3878 5.494390 TGAATAGTCATCCATCCATCCTG 57.506 43.478 0.00 0.00 0.00 3.86
2888 3879 4.287845 TGAATAGTCATCCATCCATCCTGG 59.712 45.833 0.00 0.00 39.43 4.45
2889 3880 1.442773 AGTCATCCATCCATCCTGGG 58.557 55.000 0.00 0.00 38.32 4.45
2890 3881 1.143813 GTCATCCATCCATCCTGGGT 58.856 55.000 0.00 0.00 38.32 4.51
2891 3882 1.072965 GTCATCCATCCATCCTGGGTC 59.927 57.143 0.00 0.00 38.32 4.46
2892 3883 1.142936 CATCCATCCATCCTGGGTCA 58.857 55.000 0.00 0.00 38.32 4.02
2895 3988 2.216881 TCCATCCATCCTGGGTCATTT 58.783 47.619 0.00 0.00 38.32 2.32
2956 4049 1.155042 GGCACTGAAGTTGCAGAGAG 58.845 55.000 0.00 0.00 39.20 3.20
2995 4088 7.168219 CAGCAACTGTATGGGGTATATTACAT 58.832 38.462 0.00 0.00 0.00 2.29
3030 4125 2.222007 TTGCATTGTTTTGCTTCGCT 57.778 40.000 0.00 0.00 43.18 4.93
3131 4297 4.891756 AGATTGGTGCATTTTATCTCCCTG 59.108 41.667 0.00 0.00 0.00 4.45
3237 4403 9.685276 TGATGTGGAGATACATGAAAATTAGTT 57.315 29.630 0.00 0.00 41.15 2.24
3370 4536 9.561069 GTCCTCATGTGACCAAGTTTATATTAT 57.439 33.333 6.82 0.00 0.00 1.28
3397 4564 4.541973 TCTAGATGCAGTCAAGCTTCAA 57.458 40.909 0.00 0.00 40.13 2.69
3406 4573 1.200948 GTCAAGCTTCAATGGCAGGTC 59.799 52.381 0.00 0.00 0.00 3.85
3431 4599 5.268118 TCTTAGCTGGTATGTGATGTCTG 57.732 43.478 0.00 0.00 0.00 3.51
3432 4600 4.956075 TCTTAGCTGGTATGTGATGTCTGA 59.044 41.667 0.00 0.00 0.00 3.27
3433 4601 3.815856 AGCTGGTATGTGATGTCTGAG 57.184 47.619 0.00 0.00 0.00 3.35
3434 4602 3.102972 AGCTGGTATGTGATGTCTGAGT 58.897 45.455 0.00 0.00 0.00 3.41
3435 4603 3.131933 AGCTGGTATGTGATGTCTGAGTC 59.868 47.826 0.00 0.00 0.00 3.36
3436 4604 3.131933 GCTGGTATGTGATGTCTGAGTCT 59.868 47.826 0.00 0.00 0.00 3.24
3511 4679 8.133024 AGTCTGGCTTAATAGGAATGATAGAG 57.867 38.462 0.00 0.00 0.00 2.43
3606 4774 3.555795 GGCTTGGAGCGATTCTATGATGA 60.556 47.826 0.00 0.00 43.62 2.92
3723 4893 3.165498 GCGTAACAGCCAGGAACG 58.835 61.111 0.00 0.00 36.67 3.95
3826 6199 2.202960 CGTGTGGTCCGTTGTGGT 60.203 61.111 0.00 0.00 39.52 4.16
3918 7192 1.235724 GAGGACGTTGGTTCCTTTGG 58.764 55.000 0.00 0.00 33.37 3.28
3925 7199 1.595058 TTGGTTCCTTTGGGTGGGGT 61.595 55.000 0.00 0.00 0.00 4.95
3938 7212 1.628846 GGTGGGGTTGTATGTGAGAGT 59.371 52.381 0.00 0.00 0.00 3.24
3948 7222 5.073311 TGTATGTGAGAGTCTGGCTTAAC 57.927 43.478 0.00 0.00 0.00 2.01
4058 7508 3.742640 GCTTGGAGCGATTCTAGAATGGT 60.743 47.826 22.61 18.09 0.00 3.55
4238 7690 1.672881 GTGCATCATGTACTCCAAGCC 59.327 52.381 0.00 0.00 30.04 4.35
4304 7756 1.869767 GTGAGTCCAAGCTGTTCACTG 59.130 52.381 0.00 0.00 36.21 3.66
4318 7770 2.462456 TCACTGTGAGAAGATGGCAC 57.538 50.000 6.36 0.00 0.00 5.01
4549 8005 8.084073 CGCCATCCTACAAATTTGATTAATGAT 58.916 33.333 24.64 12.92 0.00 2.45
4626 8082 3.433274 TCTTGCGAGCAAAATGACTACTG 59.567 43.478 11.83 0.00 35.33 2.74
4703 8159 2.551032 GGTCGGTACTTCAGTTTTTGGG 59.449 50.000 0.00 0.00 0.00 4.12
4920 8383 1.533711 GGCATGACATGTAGGGCCT 59.466 57.895 20.88 12.58 38.37 5.19
4994 8538 5.185454 TGGGCAAGTCATATTTGTCAGTAG 58.815 41.667 0.00 0.00 31.92 2.57
5014 8558 7.013559 TCAGTAGCATTCATATTTGTTCATGGG 59.986 37.037 0.00 0.00 0.00 4.00
5015 8559 4.952460 AGCATTCATATTTGTTCATGGGC 58.048 39.130 0.00 0.00 0.00 5.36
5016 8560 4.406326 AGCATTCATATTTGTTCATGGGCA 59.594 37.500 0.00 0.00 0.00 5.36
5017 8561 5.104859 AGCATTCATATTTGTTCATGGGCAA 60.105 36.000 0.00 0.00 0.00 4.52
5018 8562 5.235616 GCATTCATATTTGTTCATGGGCAAG 59.764 40.000 0.00 0.00 0.00 4.01
5019 8563 5.999205 TTCATATTTGTTCATGGGCAAGT 57.001 34.783 0.00 0.00 0.00 3.16
5020 8564 5.581126 TCATATTTGTTCATGGGCAAGTC 57.419 39.130 0.00 0.00 0.00 3.01
5021 8565 5.015515 TCATATTTGTTCATGGGCAAGTCA 58.984 37.500 0.00 0.00 0.00 3.41
5022 8566 5.657745 TCATATTTGTTCATGGGCAAGTCAT 59.342 36.000 0.00 0.00 0.00 3.06
5023 8567 6.832900 TCATATTTGTTCATGGGCAAGTCATA 59.167 34.615 0.00 0.00 0.00 2.15
5024 8568 4.782019 TTTGTTCATGGGCAAGTCATAC 57.218 40.909 0.00 0.00 0.00 2.39
5025 8569 3.719268 TGTTCATGGGCAAGTCATACT 57.281 42.857 0.00 0.00 0.00 2.12
5026 8570 4.032960 TGTTCATGGGCAAGTCATACTT 57.967 40.909 0.00 0.00 39.39 2.24
5040 8584 6.665992 AGTCATACTTGTCAGTAACTTCCA 57.334 37.500 0.00 0.00 39.05 3.53
5041 8585 7.246171 AGTCATACTTGTCAGTAACTTCCAT 57.754 36.000 0.00 0.00 39.05 3.41
5042 8586 7.099764 AGTCATACTTGTCAGTAACTTCCATG 58.900 38.462 0.00 0.00 39.05 3.66
5043 8587 6.874134 GTCATACTTGTCAGTAACTTCCATGT 59.126 38.462 0.00 0.00 39.05 3.21
5044 8588 7.387948 GTCATACTTGTCAGTAACTTCCATGTT 59.612 37.037 0.00 0.00 39.05 2.71
5045 8589 7.936847 TCATACTTGTCAGTAACTTCCATGTTT 59.063 33.333 0.00 0.00 39.05 2.83
5046 8590 6.377327 ACTTGTCAGTAACTTCCATGTTTG 57.623 37.500 0.00 0.00 0.00 2.93
5047 8591 5.885912 ACTTGTCAGTAACTTCCATGTTTGT 59.114 36.000 0.00 0.00 0.00 2.83
5048 8592 6.377146 ACTTGTCAGTAACTTCCATGTTTGTT 59.623 34.615 0.00 0.00 0.00 2.83
5049 8593 6.371809 TGTCAGTAACTTCCATGTTTGTTC 57.628 37.500 0.00 0.00 0.00 3.18
5050 8594 5.883115 TGTCAGTAACTTCCATGTTTGTTCA 59.117 36.000 0.00 0.00 0.00 3.18
5051 8595 6.545666 TGTCAGTAACTTCCATGTTTGTTCAT 59.454 34.615 0.00 0.00 0.00 2.57
5052 8596 6.857964 GTCAGTAACTTCCATGTTTGTTCATG 59.142 38.462 0.00 0.00 43.14 3.07
5053 8597 5.630680 CAGTAACTTCCATGTTTGTTCATGC 59.369 40.000 0.00 0.00 42.44 4.06
5093 8637 3.368495 CAGTTAAGGTTGCGTTTTGTCC 58.632 45.455 0.00 0.00 0.00 4.02
5108 8652 6.622679 GCGTTTTGTCCATAACATTCAGATCA 60.623 38.462 0.00 0.00 37.82 2.92
5121 8670 4.581309 TTCAGATCAGGCCTCTTTGATT 57.419 40.909 0.00 0.00 34.33 2.57
5154 8703 5.520748 TCCTAGGAGGAATTTTCAAGCTT 57.479 39.130 7.62 0.00 42.51 3.74
5155 8704 6.636454 TCCTAGGAGGAATTTTCAAGCTTA 57.364 37.500 7.62 0.00 42.51 3.09
5233 8816 2.660064 ATCCTGGGTGACGCCTGTC 61.660 63.158 4.75 0.00 45.71 3.51
5244 8827 2.031163 GCCTGTCGTGGTCTTGCT 59.969 61.111 0.00 0.00 0.00 3.91
5245 8828 1.598130 GCCTGTCGTGGTCTTGCTT 60.598 57.895 0.00 0.00 0.00 3.91
5246 8829 1.845809 GCCTGTCGTGGTCTTGCTTG 61.846 60.000 0.00 0.00 0.00 4.01
5247 8830 1.230635 CCTGTCGTGGTCTTGCTTGG 61.231 60.000 0.00 0.00 0.00 3.61
5248 8831 1.845809 CTGTCGTGGTCTTGCTTGGC 61.846 60.000 0.00 0.00 0.00 4.52
5249 8832 1.891919 GTCGTGGTCTTGCTTGGCA 60.892 57.895 0.00 0.00 36.47 4.92
5250 8833 1.597854 TCGTGGTCTTGCTTGGCAG 60.598 57.895 0.00 0.00 40.61 4.85
5251 8834 1.597854 CGTGGTCTTGCTTGGCAGA 60.598 57.895 0.00 0.00 40.61 4.26
5252 8835 1.165907 CGTGGTCTTGCTTGGCAGAA 61.166 55.000 0.00 0.00 40.61 3.02
5253 8836 1.251251 GTGGTCTTGCTTGGCAGAAT 58.749 50.000 0.00 0.00 40.61 2.40
5254 8837 2.436417 GTGGTCTTGCTTGGCAGAATA 58.564 47.619 0.00 0.00 40.61 1.75
5255 8838 3.019564 GTGGTCTTGCTTGGCAGAATAT 58.980 45.455 0.00 0.00 40.61 1.28
5256 8839 3.445096 GTGGTCTTGCTTGGCAGAATATT 59.555 43.478 0.00 0.00 40.61 1.28
5257 8840 3.444742 TGGTCTTGCTTGGCAGAATATTG 59.555 43.478 0.00 0.00 40.61 1.90
5258 8841 3.442100 GTCTTGCTTGGCAGAATATTGC 58.558 45.455 0.00 0.00 40.61 3.56
5259 8842 3.129988 GTCTTGCTTGGCAGAATATTGCT 59.870 43.478 0.00 0.00 43.57 3.91
5260 8843 3.765511 TCTTGCTTGGCAGAATATTGCTT 59.234 39.130 0.00 0.00 43.57 3.91
5261 8844 3.788333 TGCTTGGCAGAATATTGCTTC 57.212 42.857 0.00 0.00 43.57 3.86
5262 8845 3.359033 TGCTTGGCAGAATATTGCTTCT 58.641 40.909 0.00 0.00 43.57 2.85
5263 8846 3.379372 TGCTTGGCAGAATATTGCTTCTC 59.621 43.478 0.00 0.00 43.57 2.87
5264 8847 3.631227 GCTTGGCAGAATATTGCTTCTCT 59.369 43.478 0.00 0.00 43.57 3.10
5265 8848 4.818546 GCTTGGCAGAATATTGCTTCTCTA 59.181 41.667 0.00 0.00 43.57 2.43
5266 8849 5.049543 GCTTGGCAGAATATTGCTTCTCTAG 60.050 44.000 0.00 0.00 43.57 2.43
5267 8850 5.620738 TGGCAGAATATTGCTTCTCTAGT 57.379 39.130 0.00 0.00 43.57 2.57
5268 8851 6.731292 TGGCAGAATATTGCTTCTCTAGTA 57.269 37.500 0.00 0.00 43.57 1.82
5269 8852 6.516718 TGGCAGAATATTGCTTCTCTAGTAC 58.483 40.000 0.00 0.00 43.57 2.73
5277 8860 2.231478 TGCTTCTCTAGTACAGTGGCAC 59.769 50.000 10.29 10.29 0.00 5.01
5279 8862 2.597578 TCTCTAGTACAGTGGCACCA 57.402 50.000 15.27 0.00 0.00 4.17
5375 9440 6.431543 TGGCAAACATTTCCGTTTCTCTATTA 59.568 34.615 0.00 0.00 36.98 0.98
5402 9467 5.051374 GCTATTCTGAACTTCTGATGCGTAC 60.051 44.000 0.00 0.00 0.00 3.67
5404 9469 4.098055 TCTGAACTTCTGATGCGTACTC 57.902 45.455 0.00 0.00 0.00 2.59
5405 9470 3.119459 TCTGAACTTCTGATGCGTACTCC 60.119 47.826 0.00 0.00 0.00 3.85
5460 9533 6.349300 ACACTTTTTGAGCTCTTTCTGAGTA 58.651 36.000 16.19 0.00 44.41 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 86 6.490381 TGAGAGAGAAAGCTACAACTAGACAA 59.510 38.462 0.00 0.00 0.00 3.18
266 275 2.046988 CTGTCAGTGCCATCGCCA 60.047 61.111 0.00 0.00 0.00 5.69
426 436 1.035385 CATGCCTCATGCTTCTGCCA 61.035 55.000 0.00 0.00 42.00 4.92
462 472 2.092646 CCGTTGACCATTCCTATTCCCA 60.093 50.000 0.00 0.00 0.00 4.37
469 479 0.609131 CAAGGCCGTTGACCATTCCT 60.609 55.000 8.72 0.00 38.60 3.36
473 483 1.973281 CAGCAAGGCCGTTGACCAT 60.973 57.895 16.28 0.02 38.60 3.55
597 607 2.093288 GCATCTCCTGTCTCCATCACAA 60.093 50.000 0.00 0.00 0.00 3.33
598 608 1.483827 GCATCTCCTGTCTCCATCACA 59.516 52.381 0.00 0.00 0.00 3.58
654 664 1.306141 TTGCCCCATCCTCGTCTCT 60.306 57.895 0.00 0.00 0.00 3.10
671 681 3.315142 TTGCAGCTCCGCGGATCTT 62.315 57.895 31.19 14.48 33.35 2.40
688 699 0.394488 TCTCGCCTCATCTCCGTCTT 60.394 55.000 0.00 0.00 0.00 3.01
886 898 2.049063 ACACTTCGAGCGGTCTGC 60.049 61.111 13.48 0.00 46.98 4.26
936 957 1.202651 CGGGCGGAAAATCCTATCTGT 60.203 52.381 0.00 0.00 33.30 3.41
1051 1077 2.026729 TGATAGCGGAAATGGTGGTGAA 60.027 45.455 0.00 0.00 0.00 3.18
1052 1078 1.557371 TGATAGCGGAAATGGTGGTGA 59.443 47.619 0.00 0.00 0.00 4.02
1212 1238 1.078143 GAATCCAAGGAGCTGCGGT 60.078 57.895 0.00 0.00 0.00 5.68
1383 1409 2.756691 TAGCCGGCGTGGAAGCTA 60.757 61.111 23.20 8.49 42.00 3.32
1394 1420 4.233635 CGAGGACGACGTAGCCGG 62.234 72.222 0.00 0.00 42.66 6.13
1412 1438 1.228831 TGGTGGGTGGCATCTTTGG 60.229 57.895 0.00 0.00 0.00 3.28
1531 1560 4.148825 CCGCTGGTCCTCTTCGGG 62.149 72.222 0.00 0.00 36.73 5.14
1625 1654 1.352622 AACCTGCCACTCCCTTGTCA 61.353 55.000 0.00 0.00 0.00 3.58
1734 1793 0.525668 CATAGGGTCGACTCGTGTGC 60.526 60.000 16.46 0.00 0.00 4.57
1792 1851 0.819582 AAGAATGGCGGCAAATCCAG 59.180 50.000 18.31 0.00 35.57 3.86
1938 2003 2.436417 ACCCATTTCTGAACACCATCG 58.564 47.619 0.00 0.00 0.00 3.84
2020 2097 3.554129 CCATCGATAACCGCCTCAATGTA 60.554 47.826 0.00 0.00 38.37 2.29
2074 2151 5.363101 AGATCCAGTACGTTCGTCAGTATA 58.637 41.667 0.00 0.00 0.00 1.47
2085 2179 3.150767 GGATAGCAGAGATCCAGTACGT 58.849 50.000 0.00 0.00 42.26 3.57
2087 2181 3.761752 GAGGGATAGCAGAGATCCAGTAC 59.238 52.174 4.18 0.00 44.17 2.73
2093 2187 1.550072 GGCAGAGGGATAGCAGAGATC 59.450 57.143 0.00 0.00 0.00 2.75
2132 2238 3.307242 CGTACTATCACCAAAGAGCTTGC 59.693 47.826 0.00 0.00 33.27 4.01
2383 2523 6.343716 TGCCAAATCAAACATGATAGTGTT 57.656 33.333 0.00 0.00 43.78 3.32
2520 3144 2.076207 TCCCTCATGCATTTCCCATG 57.924 50.000 0.00 0.00 41.03 3.66
2674 3623 4.647424 TGAAACCAACACATGACCTTTC 57.353 40.909 0.00 0.00 0.00 2.62
2736 3685 6.146184 CGTTCATTGGATTACATTCGCTAGAT 59.854 38.462 0.00 0.00 0.00 1.98
2741 3690 4.273005 ACGTTCATTGGATTACATTCGC 57.727 40.909 0.00 0.00 0.00 4.70
2742 3691 7.000575 AGTTACGTTCATTGGATTACATTCG 57.999 36.000 0.00 0.00 0.00 3.34
2799 3748 6.393171 AGAGCCAAAGATAGCAAAATTTCAC 58.607 36.000 0.00 0.00 0.00 3.18
2851 3801 8.772705 GGATGACTATTCAAGCTGAGAATAAAG 58.227 37.037 17.60 13.24 37.47 1.85
2882 3873 6.730507 ACAAAAGGAAATAAATGACCCAGGAT 59.269 34.615 0.00 0.00 0.00 3.24
2883 3874 6.081356 ACAAAAGGAAATAAATGACCCAGGA 58.919 36.000 0.00 0.00 0.00 3.86
2884 3875 6.358974 ACAAAAGGAAATAAATGACCCAGG 57.641 37.500 0.00 0.00 0.00 4.45
2995 4088 9.995003 AAACAATGCAAATAACTTATTTCTCCA 57.005 25.926 4.09 3.58 36.29 3.86
3030 4125 1.347378 TGAGGTATGCAAGCAGACACA 59.653 47.619 19.81 15.63 39.64 3.72
3131 4297 3.680458 GCAACAGTAGGCTAAGTTGACTC 59.320 47.826 30.03 16.95 42.87 3.36
3280 4446 0.607217 TTGACCAGCATCACAGCCAG 60.607 55.000 0.00 0.00 34.23 4.85
3370 4536 5.065914 AGCTTGACTGCATCTAGAAAACAA 58.934 37.500 0.00 0.00 32.40 2.83
3397 4564 2.356535 CCAGCTAAGAAAGACCTGCCAT 60.357 50.000 0.00 0.00 0.00 4.40
3406 4573 6.257411 CAGACATCACATACCAGCTAAGAAAG 59.743 42.308 0.00 0.00 0.00 2.62
3462 4630 5.010719 TCTCACAATATACCGGCTTCCTTAG 59.989 44.000 0.00 0.00 0.00 2.18
3472 4640 3.319405 AGCCAGACTCTCACAATATACCG 59.681 47.826 0.00 0.00 0.00 4.02
3546 4714 2.162408 GGAGTTCTTTTCGAATGGGCTG 59.838 50.000 0.00 0.00 33.45 4.85
3606 4774 1.835712 AACTTCCCGGTCGGTCACT 60.836 57.895 8.67 0.00 0.00 3.41
3826 6199 1.002746 ACATGTGCCATGCCGTGTA 60.003 52.632 13.19 0.00 31.14 2.90
3918 7192 1.628846 ACTCTCACATACAACCCCACC 59.371 52.381 0.00 0.00 0.00 4.61
3925 7199 5.011635 TGTTAAGCCAGACTCTCACATACAA 59.988 40.000 0.00 0.00 0.00 2.41
3938 7212 5.663106 AGTCTATCATTCCTGTTAAGCCAGA 59.337 40.000 0.00 0.00 34.23 3.86
3948 7222 7.282332 TGATGTGAGTAGTCTATCATTCCTG 57.718 40.000 11.60 0.00 0.00 3.86
4068 7518 1.632589 GCACCAGGGACCAAATTCTT 58.367 50.000 0.00 0.00 0.00 2.52
4082 7532 2.591429 CCTCACTTGTGCGCACCA 60.591 61.111 35.72 25.43 0.00 4.17
4092 7542 0.463654 TGCGCACTTTGTCCTCACTT 60.464 50.000 5.66 0.00 0.00 3.16
4304 7756 2.983229 ACATCAGTGCCATCTTCTCAC 58.017 47.619 0.00 0.00 0.00 3.51
4428 7884 3.565449 CCATGGTTTGTGAATCCCCCTAA 60.565 47.826 2.57 0.00 0.00 2.69
4429 7885 2.024464 CCATGGTTTGTGAATCCCCCTA 60.024 50.000 2.57 0.00 0.00 3.53
4430 7886 1.273211 CCATGGTTTGTGAATCCCCCT 60.273 52.381 2.57 0.00 0.00 4.79
4433 7889 4.086457 ACTAACCATGGTTTGTGAATCCC 58.914 43.478 34.29 0.00 41.09 3.85
4490 7946 5.009010 GCATGAACAGAGGAAGTTTCTTTCA 59.991 40.000 0.00 0.28 32.11 2.69
4549 8005 4.701651 CCCTATGTGACTTTTGCTTCATCA 59.298 41.667 0.00 0.00 0.00 3.07
4626 8082 2.156917 TGCCAGCTATGCATCATAAGC 58.843 47.619 0.19 6.80 32.85 3.09
4674 8130 1.616865 TGAAGTACCGACCCACTCAAG 59.383 52.381 0.00 0.00 0.00 3.02
4682 8138 2.551032 CCCAAAAACTGAAGTACCGACC 59.449 50.000 0.00 0.00 0.00 4.79
4703 8159 0.968405 ACATGCCCATTTCACACCAC 59.032 50.000 0.00 0.00 0.00 4.16
4744 8200 5.049828 GTGTCCCATTTCACAAAAGGAAAG 58.950 41.667 0.00 0.00 37.64 2.62
4798 8257 6.254589 CCTGTTTCATGTAAAAACGCAAAAGA 59.745 34.615 0.00 0.00 39.04 2.52
4920 8383 3.326006 AGAGAAGGAATGAACTCACAGCA 59.674 43.478 0.00 0.00 32.59 4.41
4994 8538 4.695396 TGCCCATGAACAAATATGAATGC 58.305 39.130 0.00 0.00 0.00 3.56
5016 8560 7.062749 TGGAAGTTACTGACAAGTATGACTT 57.937 36.000 3.71 3.71 40.36 3.01
5017 8561 6.665992 TGGAAGTTACTGACAAGTATGACT 57.334 37.500 0.00 0.00 38.69 3.41
5018 8562 6.874134 ACATGGAAGTTACTGACAAGTATGAC 59.126 38.462 0.00 0.00 38.69 3.06
5019 8563 7.004555 ACATGGAAGTTACTGACAAGTATGA 57.995 36.000 0.00 0.00 38.69 2.15
5020 8564 7.672983 AACATGGAAGTTACTGACAAGTATG 57.327 36.000 0.00 0.00 38.69 2.39
5021 8565 7.719633 ACAAACATGGAAGTTACTGACAAGTAT 59.280 33.333 0.00 0.00 38.69 2.12
5022 8566 7.051623 ACAAACATGGAAGTTACTGACAAGTA 58.948 34.615 0.00 0.00 37.88 2.24
5023 8567 5.885912 ACAAACATGGAAGTTACTGACAAGT 59.114 36.000 0.00 0.00 40.67 3.16
5024 8568 6.377327 ACAAACATGGAAGTTACTGACAAG 57.623 37.500 0.00 0.00 0.00 3.16
5025 8569 6.375736 TGAACAAACATGGAAGTTACTGACAA 59.624 34.615 0.00 0.00 0.00 3.18
5026 8570 5.883115 TGAACAAACATGGAAGTTACTGACA 59.117 36.000 0.00 0.00 0.00 3.58
5027 8571 6.371809 TGAACAAACATGGAAGTTACTGAC 57.628 37.500 0.00 0.00 0.00 3.51
5028 8572 6.514870 GCATGAACAAACATGGAAGTTACTGA 60.515 38.462 0.00 0.00 45.14 3.41
5029 8573 5.630680 GCATGAACAAACATGGAAGTTACTG 59.369 40.000 0.00 1.48 45.14 2.74
5030 8574 5.562696 CGCATGAACAAACATGGAAGTTACT 60.563 40.000 0.00 0.00 45.14 2.24
5031 8575 4.616802 CGCATGAACAAACATGGAAGTTAC 59.383 41.667 0.00 0.00 45.14 2.50
5032 8576 4.793071 CGCATGAACAAACATGGAAGTTA 58.207 39.130 0.00 0.00 45.14 2.24
5033 8577 3.641648 CGCATGAACAAACATGGAAGTT 58.358 40.909 0.00 0.00 45.14 2.66
5034 8578 2.607771 GCGCATGAACAAACATGGAAGT 60.608 45.455 0.30 0.00 45.14 3.01
5035 8579 1.987770 GCGCATGAACAAACATGGAAG 59.012 47.619 0.30 0.00 45.14 3.46
5036 8580 1.612950 AGCGCATGAACAAACATGGAA 59.387 42.857 11.47 0.00 45.14 3.53
5037 8581 1.068402 CAGCGCATGAACAAACATGGA 60.068 47.619 11.47 0.00 45.14 3.41
5038 8582 1.342555 CAGCGCATGAACAAACATGG 58.657 50.000 11.47 0.00 45.14 3.66
5039 8583 0.711670 GCAGCGCATGAACAAACATG 59.288 50.000 11.47 0.00 46.96 3.21
5040 8584 0.599558 AGCAGCGCATGAACAAACAT 59.400 45.000 11.47 0.00 0.00 2.71
5041 8585 0.385029 AAGCAGCGCATGAACAAACA 59.615 45.000 11.47 0.00 0.00 2.83
5042 8586 1.055338 GAAGCAGCGCATGAACAAAC 58.945 50.000 11.47 0.00 0.00 2.93
5043 8587 0.385849 CGAAGCAGCGCATGAACAAA 60.386 50.000 11.47 0.00 0.00 2.83
5044 8588 1.207339 CGAAGCAGCGCATGAACAA 59.793 52.632 11.47 0.00 0.00 2.83
5045 8589 2.862436 CGAAGCAGCGCATGAACA 59.138 55.556 11.47 0.00 0.00 3.18
5075 8619 5.067413 TGTTATGGACAAAACGCAACCTTAA 59.933 36.000 0.00 0.00 34.69 1.85
5093 8637 4.970711 AGAGGCCTGATCTGAATGTTATG 58.029 43.478 12.00 0.00 0.00 1.90
5108 8652 3.575805 TGGTTTTGAATCAAAGAGGCCT 58.424 40.909 3.86 3.86 34.72 5.19
5148 8697 4.811024 TCTCTCGCCACATTATTAAGCTTG 59.189 41.667 9.86 0.00 0.00 4.01
5149 8698 5.023533 TCTCTCGCCACATTATTAAGCTT 57.976 39.130 3.48 3.48 0.00 3.74
5150 8699 4.672587 TCTCTCGCCACATTATTAAGCT 57.327 40.909 0.00 0.00 0.00 3.74
5152 8701 8.594881 AGTAATTCTCTCGCCACATTATTAAG 57.405 34.615 0.00 0.00 0.00 1.85
5153 8702 9.692749 CTAGTAATTCTCTCGCCACATTATTAA 57.307 33.333 0.00 0.00 0.00 1.40
5154 8703 8.304596 CCTAGTAATTCTCTCGCCACATTATTA 58.695 37.037 0.00 0.00 0.00 0.98
5155 8704 7.155328 CCTAGTAATTCTCTCGCCACATTATT 58.845 38.462 0.00 0.00 0.00 1.40
5233 8816 1.165907 TTCTGCCAAGCAAGACCACG 61.166 55.000 0.00 0.00 38.41 4.94
5237 8820 3.129988 AGCAATATTCTGCCAAGCAAGAC 59.870 43.478 0.00 0.00 43.73 3.01
5244 8827 5.994250 ACTAGAGAAGCAATATTCTGCCAA 58.006 37.500 0.00 0.00 43.73 4.52
5245 8828 5.620738 ACTAGAGAAGCAATATTCTGCCA 57.379 39.130 0.00 0.00 43.73 4.92
5246 8829 6.516718 TGTACTAGAGAAGCAATATTCTGCC 58.483 40.000 0.00 0.00 43.73 4.85
5247 8830 7.168972 CACTGTACTAGAGAAGCAATATTCTGC 59.831 40.741 0.00 0.00 39.63 4.26
5248 8831 7.651304 CCACTGTACTAGAGAAGCAATATTCTG 59.349 40.741 0.00 0.00 39.63 3.02
5249 8832 7.685641 GCCACTGTACTAGAGAAGCAATATTCT 60.686 40.741 0.00 0.00 42.23 2.40
5250 8833 6.422400 GCCACTGTACTAGAGAAGCAATATTC 59.578 42.308 0.00 0.00 0.00 1.75
5251 8834 6.127054 TGCCACTGTACTAGAGAAGCAATATT 60.127 38.462 0.00 0.00 0.00 1.28
5252 8835 5.363868 TGCCACTGTACTAGAGAAGCAATAT 59.636 40.000 0.00 0.00 0.00 1.28
5253 8836 4.709886 TGCCACTGTACTAGAGAAGCAATA 59.290 41.667 0.00 0.00 0.00 1.90
5254 8837 3.515502 TGCCACTGTACTAGAGAAGCAAT 59.484 43.478 0.00 0.00 0.00 3.56
5255 8838 2.897326 TGCCACTGTACTAGAGAAGCAA 59.103 45.455 0.00 0.00 0.00 3.91
5256 8839 2.231478 GTGCCACTGTACTAGAGAAGCA 59.769 50.000 0.00 0.00 0.00 3.91
5257 8840 2.417515 GGTGCCACTGTACTAGAGAAGC 60.418 54.545 0.00 0.00 0.00 3.86
5258 8841 2.826128 TGGTGCCACTGTACTAGAGAAG 59.174 50.000 0.00 0.00 0.00 2.85
5259 8842 2.884320 TGGTGCCACTGTACTAGAGAA 58.116 47.619 0.00 0.00 0.00 2.87
5260 8843 2.597578 TGGTGCCACTGTACTAGAGA 57.402 50.000 0.00 0.00 0.00 3.10
5261 8844 5.537300 AATATGGTGCCACTGTACTAGAG 57.463 43.478 0.00 0.00 0.00 2.43
5262 8845 5.396324 CCAAATATGGTGCCACTGTACTAGA 60.396 44.000 0.00 0.00 42.18 2.43
5263 8846 4.816385 CCAAATATGGTGCCACTGTACTAG 59.184 45.833 0.00 0.00 42.18 2.57
5264 8847 4.776349 CCAAATATGGTGCCACTGTACTA 58.224 43.478 0.00 0.00 42.18 1.82
5265 8848 3.620488 CCAAATATGGTGCCACTGTACT 58.380 45.455 0.00 0.00 42.18 2.73
5279 8862 3.316308 GCTCATCTTGAACCGCCAAATAT 59.684 43.478 0.00 0.00 0.00 1.28
5375 9440 5.007430 CGCATCAGAAGTTCAGAATAGCAAT 59.993 40.000 5.50 0.00 0.00 3.56
5405 9470 3.285484 AGGCTGCAACTTCCATCTAATG 58.715 45.455 0.50 0.00 0.00 1.90
5460 9533 4.507710 ACAGCATACATTGATCGACAACT 58.492 39.130 0.00 0.00 41.52 3.16
5487 9560 2.676121 CCAATCACGGCAGGGCAA 60.676 61.111 0.00 0.00 0.00 4.52
5495 9569 4.679662 AGTACGAGATAAACCAATCACGG 58.320 43.478 8.19 0.00 42.09 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.