Multiple sequence alignment - TraesCS5B01G230300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G230300 chr5B 100.000 2854 0 0 1 2854 407129369 407126516 0.000000e+00 5271
1 TraesCS5B01G230300 chr5A 90.845 1988 85 23 915 2854 447370320 447368382 0.000000e+00 2573
2 TraesCS5B01G230300 chr5D 92.601 1757 70 10 1121 2854 344691794 344693513 0.000000e+00 2470
3 TraesCS5B01G230300 chr5D 93.785 177 10 1 915 1091 344689945 344690120 6.060000e-67 265
4 TraesCS5B01G230300 chr4B 99.563 916 4 0 1 916 291325519 291324604 0.000000e+00 1670
5 TraesCS5B01G230300 chr4B 99.236 916 7 0 1 916 5373777 5372862 0.000000e+00 1653
6 TraesCS5B01G230300 chr3B 99.563 916 4 0 1 916 25291456 25290541 0.000000e+00 1670
7 TraesCS5B01G230300 chr2A 99.129 919 8 0 1 919 438397868 438396950 0.000000e+00 1653
8 TraesCS5B01G230300 chr1B 99.234 914 7 0 1 914 655770417 655769504 0.000000e+00 1650
9 TraesCS5B01G230300 chr1B 99.022 920 8 1 1 919 451911372 451910453 0.000000e+00 1648
10 TraesCS5B01G230300 chr4A 99.021 919 9 0 1 919 467533281 467534199 0.000000e+00 1648
11 TraesCS5B01G230300 chr3D 99.127 916 8 0 1 916 413767004 413766089 0.000000e+00 1648
12 TraesCS5B01G230300 chr1A 99.021 919 9 0 1 919 10077787 10076869 0.000000e+00 1648
13 TraesCS5B01G230300 chr1D 80.603 696 89 29 915 1581 457875460 457876138 1.970000e-136 496


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G230300 chr5B 407126516 407129369 2853 True 5271.0 5271 100.000 1 2854 1 chr5B.!!$R1 2853
1 TraesCS5B01G230300 chr5A 447368382 447370320 1938 True 2573.0 2573 90.845 915 2854 1 chr5A.!!$R1 1939
2 TraesCS5B01G230300 chr5D 344689945 344693513 3568 False 1367.5 2470 93.193 915 2854 2 chr5D.!!$F1 1939
3 TraesCS5B01G230300 chr4B 291324604 291325519 915 True 1670.0 1670 99.563 1 916 1 chr4B.!!$R2 915
4 TraesCS5B01G230300 chr4B 5372862 5373777 915 True 1653.0 1653 99.236 1 916 1 chr4B.!!$R1 915
5 TraesCS5B01G230300 chr3B 25290541 25291456 915 True 1670.0 1670 99.563 1 916 1 chr3B.!!$R1 915
6 TraesCS5B01G230300 chr2A 438396950 438397868 918 True 1653.0 1653 99.129 1 919 1 chr2A.!!$R1 918
7 TraesCS5B01G230300 chr1B 655769504 655770417 913 True 1650.0 1650 99.234 1 914 1 chr1B.!!$R2 913
8 TraesCS5B01G230300 chr1B 451910453 451911372 919 True 1648.0 1648 99.022 1 919 1 chr1B.!!$R1 918
9 TraesCS5B01G230300 chr4A 467533281 467534199 918 False 1648.0 1648 99.021 1 919 1 chr4A.!!$F1 918
10 TraesCS5B01G230300 chr3D 413766089 413767004 915 True 1648.0 1648 99.127 1 916 1 chr3D.!!$R1 915
11 TraesCS5B01G230300 chr1A 10076869 10077787 918 True 1648.0 1648 99.021 1 919 1 chr1A.!!$R1 918
12 TraesCS5B01G230300 chr1D 457875460 457876138 678 False 496.0 496 80.603 915 1581 1 chr1D.!!$F1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
996 1002 1.271543 TGCTCACTTGTGCTTAGCCAT 60.272 47.619 0.29 0.0 35.73 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 3845 0.106708 TCCTTGACAGTGCACAGGAC 59.893 55.0 21.04 11.49 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 162 5.743636 TCGAAAGGGTTTAGGCTTAGTAA 57.256 39.130 0.00 0.00 0.00 2.24
410 411 6.901081 AAAGCTAAAAGGCAAGTTCTACAT 57.099 33.333 0.00 0.00 34.17 2.29
996 1002 1.271543 TGCTCACTTGTGCTTAGCCAT 60.272 47.619 0.29 0.00 35.73 4.40
1041 1047 1.936547 CTCTGTCGAAATAGGGCTTGC 59.063 52.381 0.00 0.00 0.00 4.01
1051 1063 0.914417 TAGGGCTTGCCCAGTAGCTT 60.914 55.000 29.79 11.86 37.54 3.74
1063 1075 3.964031 CCCAGTAGCTTGTCCTCTTCTAT 59.036 47.826 0.00 0.00 0.00 1.98
1074 1086 2.023015 TCCTCTTCTATCCCAAGCCTCA 60.023 50.000 0.00 0.00 0.00 3.86
1079 1091 0.179034 CTATCCCAAGCCTCAGTGCC 60.179 60.000 0.00 0.00 0.00 5.01
1080 1092 0.913934 TATCCCAAGCCTCAGTGCCA 60.914 55.000 0.00 0.00 0.00 4.92
1081 1093 2.207501 ATCCCAAGCCTCAGTGCCAG 62.208 60.000 0.00 0.00 0.00 4.85
1082 1094 3.060615 CCAAGCCTCAGTGCCAGC 61.061 66.667 0.00 0.00 0.00 4.85
1083 1095 2.281970 CAAGCCTCAGTGCCAGCA 60.282 61.111 0.00 0.00 0.00 4.41
1084 1096 2.033757 AAGCCTCAGTGCCAGCAG 59.966 61.111 0.00 0.00 0.00 4.24
1085 1097 3.564345 AAGCCTCAGTGCCAGCAGG 62.564 63.158 0.00 0.00 38.23 4.85
1110 1130 2.485814 CAGCAGCAAGGAAGGTTAGAAC 59.514 50.000 0.00 0.00 0.00 3.01
1111 1131 2.373502 AGCAGCAAGGAAGGTTAGAACT 59.626 45.455 0.00 0.00 0.00 3.01
1112 1132 3.149981 GCAGCAAGGAAGGTTAGAACTT 58.850 45.455 0.00 0.00 0.00 2.66
1113 1133 4.041691 AGCAGCAAGGAAGGTTAGAACTTA 59.958 41.667 0.00 0.00 0.00 2.24
1114 1134 4.393371 GCAGCAAGGAAGGTTAGAACTTAG 59.607 45.833 0.00 0.00 0.00 2.18
1115 1135 5.794894 CAGCAAGGAAGGTTAGAACTTAGA 58.205 41.667 0.00 0.00 0.00 2.10
1116 1136 6.231211 CAGCAAGGAAGGTTAGAACTTAGAA 58.769 40.000 0.00 0.00 0.00 2.10
1159 2836 6.494666 TCCATATTCCTTCCGTATTTCTGT 57.505 37.500 0.00 0.00 0.00 3.41
1234 2912 2.224744 TGGTTGGCAGTTAGAAGCATGA 60.225 45.455 0.00 0.00 0.00 3.07
1667 3363 6.363473 GTCTTTGTTCAATCTTGAGTTACCG 58.637 40.000 0.00 0.00 38.61 4.02
1712 3408 4.286291 CCCTGTATGGAAGGATACCCTAAC 59.714 50.000 0.00 0.00 43.48 2.34
1738 3434 0.454600 CTGTAAAGCATGGCAGGCAG 59.545 55.000 27.04 10.50 0.00 4.85
1743 3439 2.833582 GCATGGCAGGCAGCTGAT 60.834 61.111 20.53 1.05 44.79 2.90
1801 3507 8.752005 ATGTTAGCTTTCTGCCTAATTATCAA 57.248 30.769 0.00 0.00 44.23 2.57
1878 3584 5.639506 TGCAGACTAGCTAATTTCAGTTCAC 59.360 40.000 0.00 0.00 34.99 3.18
1901 3607 7.554835 TCACATGTGGTTAAGAATGGGTATAAC 59.445 37.037 25.16 0.00 0.00 1.89
1984 3690 0.445436 GTGATTTCAGGCTGCAGACG 59.555 55.000 20.43 11.72 0.00 4.18
1997 3703 1.486310 TGCAGACGCCTGGATTAGAAT 59.514 47.619 0.00 0.00 40.72 2.40
2006 3712 4.503817 CGCCTGGATTAGAATTGATGGAGA 60.504 45.833 0.00 0.00 0.00 3.71
2080 3786 5.682862 GTGACAGTGTTGCTTTTGTTATCTG 59.317 40.000 0.00 0.00 0.00 2.90
2119 3825 2.427232 TCTGCAAGCAATTGTTCTGC 57.573 45.000 16.74 16.74 40.24 4.26
2120 3826 1.682323 TCTGCAAGCAATTGTTCTGCA 59.318 42.857 21.78 21.78 42.48 4.41
2121 3827 2.058798 CTGCAAGCAATTGTTCTGCAG 58.941 47.619 28.14 28.14 42.48 4.41
2122 3828 0.788391 GCAAGCAATTGTTCTGCAGC 59.212 50.000 9.47 0.00 42.48 5.25
2123 3829 1.604693 GCAAGCAATTGTTCTGCAGCT 60.605 47.619 9.47 0.00 42.48 4.24
2124 3830 2.750948 CAAGCAATTGTTCTGCAGCTT 58.249 42.857 9.47 4.10 42.48 3.74
2125 3831 3.128349 CAAGCAATTGTTCTGCAGCTTT 58.872 40.909 9.47 0.00 42.48 3.51
2126 3832 2.750948 AGCAATTGTTCTGCAGCTTTG 58.249 42.857 9.47 8.88 42.48 2.77
2127 3833 1.193874 GCAATTGTTCTGCAGCTTTGC 59.806 47.619 9.47 14.52 39.69 3.68
2128 3834 1.454276 CAATTGTTCTGCAGCTTTGCG 59.546 47.619 9.47 0.00 37.69 4.85
2129 3835 0.665369 ATTGTTCTGCAGCTTTGCGC 60.665 50.000 9.47 0.00 37.69 6.09
2130 3836 2.002509 TTGTTCTGCAGCTTTGCGCA 62.003 50.000 5.66 5.66 42.61 6.09
2131 3837 2.012948 GTTCTGCAGCTTTGCGCAC 61.013 57.895 11.12 0.00 42.61 5.34
2132 3838 2.188829 TTCTGCAGCTTTGCGCACT 61.189 52.632 11.12 0.00 42.61 4.40
2133 3839 1.727511 TTCTGCAGCTTTGCGCACTT 61.728 50.000 11.12 0.00 42.61 3.16
2134 3840 1.728426 CTGCAGCTTTGCGCACTTC 60.728 57.895 11.12 0.00 42.61 3.01
2135 3841 2.429739 GCAGCTTTGCGCACTTCC 60.430 61.111 11.12 0.00 42.61 3.46
2136 3842 2.912624 GCAGCTTTGCGCACTTCCT 61.913 57.895 11.12 0.62 42.61 3.36
2137 3843 1.208614 CAGCTTTGCGCACTTCCTC 59.791 57.895 11.12 0.00 42.61 3.71
2138 3844 1.072159 AGCTTTGCGCACTTCCTCT 59.928 52.632 11.12 0.00 42.61 3.69
2139 3845 1.208614 GCTTTGCGCACTTCCTCTG 59.791 57.895 11.12 0.00 38.92 3.35
2140 3846 1.510480 GCTTTGCGCACTTCCTCTGT 61.510 55.000 11.12 0.00 38.92 3.41
2141 3847 0.514691 CTTTGCGCACTTCCTCTGTC 59.485 55.000 11.12 0.00 0.00 3.51
2142 3848 0.884704 TTTGCGCACTTCCTCTGTCC 60.885 55.000 11.12 0.00 0.00 4.02
2143 3849 1.758440 TTGCGCACTTCCTCTGTCCT 61.758 55.000 11.12 0.00 0.00 3.85
2144 3850 1.739562 GCGCACTTCCTCTGTCCTG 60.740 63.158 0.30 0.00 0.00 3.86
2145 3851 1.668294 CGCACTTCCTCTGTCCTGT 59.332 57.895 0.00 0.00 0.00 4.00
2146 3852 0.668706 CGCACTTCCTCTGTCCTGTG 60.669 60.000 0.00 0.00 0.00 3.66
2147 3853 0.952984 GCACTTCCTCTGTCCTGTGC 60.953 60.000 0.00 0.00 42.69 4.57
2186 3892 3.390175 ACTCTGTCTGCAGTATACCCT 57.610 47.619 14.67 0.00 43.05 4.34
2202 3908 7.228906 CAGTATACCCTCTCATTCGAAGTTAGA 59.771 40.741 3.35 5.44 0.00 2.10
2203 3909 4.993029 ACCCTCTCATTCGAAGTTAGAG 57.007 45.455 19.68 19.68 34.71 2.43
2208 3914 6.127591 CCCTCTCATTCGAAGTTAGAGAAGAA 60.128 42.308 24.72 7.00 36.60 2.52
2252 3965 9.950680 ACAAAGTTTTTCATATGTAAGTGACTG 57.049 29.630 1.90 0.00 0.00 3.51
2255 3968 7.584987 AGTTTTTCATATGTAAGTGACTGTGC 58.415 34.615 1.90 0.00 0.00 4.57
2260 3973 6.749139 TCATATGTAAGTGACTGTGCTATCC 58.251 40.000 1.90 0.00 0.00 2.59
2314 4030 9.878599 CTCGTTTTGACACTTTAATTGAAGTAT 57.121 29.630 14.58 4.40 37.76 2.12
2412 4128 4.023707 CACATTCTTATTCATCCCTTCGCC 60.024 45.833 0.00 0.00 0.00 5.54
2418 4134 1.161843 TTCATCCCTTCGCCGTTTTC 58.838 50.000 0.00 0.00 0.00 2.29
2425 4141 0.856641 CTTCGCCGTTTTCTCGTCAA 59.143 50.000 0.00 0.00 0.00 3.18
2427 4143 2.350899 TCGCCGTTTTCTCGTCAATA 57.649 45.000 0.00 0.00 0.00 1.90
2634 4372 4.969196 CCGTGCCACGACAGCAGT 62.969 66.667 20.57 0.00 46.05 4.40
2655 4393 2.282958 TCGGGGAACAGCTCTCGT 60.283 61.111 0.00 0.00 0.00 4.18
2657 4395 0.609957 TCGGGGAACAGCTCTCGTAA 60.610 55.000 0.00 0.00 0.00 3.18
2664 4402 0.892358 ACAGCTCTCGTAACCGGTCA 60.892 55.000 8.04 0.00 33.95 4.02
2668 4406 0.527817 CTCTCGTAACCGGTCATGGC 60.528 60.000 8.04 0.00 33.95 4.40
2669 4407 1.876714 CTCGTAACCGGTCATGGCG 60.877 63.158 8.04 8.71 33.95 5.69
2670 4408 3.560278 CGTAACCGGTCATGGCGC 61.560 66.667 8.04 0.00 0.00 6.53
2691 4429 2.126850 CGCACTTCTCGCTGTCGA 60.127 61.111 0.00 0.00 43.28 4.20
2745 4483 1.001641 GGACTCCAAGTGCTGCCAT 60.002 57.895 0.00 0.00 33.44 4.40
2752 4490 1.606224 CCAAGTGCTGCCATGTTTTCC 60.606 52.381 0.00 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 162 6.348213 GCACATCATGTACTCGGTTTTAGTTT 60.348 38.462 0.00 0.00 0.00 2.66
965 969 5.473162 AGCACAAGTGAGCATACATACAAAA 59.527 36.000 4.04 0.00 34.00 2.44
996 1002 4.074799 TCAGATTTGGAAGGAGGAGGTA 57.925 45.455 0.00 0.00 0.00 3.08
1041 1047 2.183679 AGAAGAGGACAAGCTACTGGG 58.816 52.381 0.00 0.00 0.00 4.45
1051 1063 2.119495 GGCTTGGGATAGAAGAGGACA 58.881 52.381 0.00 0.00 0.00 4.02
1063 1075 2.853542 TGGCACTGAGGCTTGGGA 60.854 61.111 0.00 0.00 44.55 4.37
1080 1092 4.968766 TTGCTGCTGCTGCCTGCT 62.969 61.111 25.44 0.00 43.37 4.24
1081 1093 4.421479 CTTGCTGCTGCTGCCTGC 62.421 66.667 25.44 18.74 40.48 4.85
1082 1094 3.749064 CCTTGCTGCTGCTGCCTG 61.749 66.667 25.44 17.92 40.48 4.85
1083 1095 3.502621 TTCCTTGCTGCTGCTGCCT 62.503 57.895 25.44 0.00 40.48 4.75
1084 1096 2.987547 TTCCTTGCTGCTGCTGCC 60.988 61.111 25.44 10.66 40.48 4.85
1085 1097 2.567049 CTTCCTTGCTGCTGCTGC 59.433 61.111 22.51 22.51 40.48 5.25
1112 1132 8.865090 GGATCAGAAGGAATGATAACTCTTCTA 58.135 37.037 0.00 0.00 41.25 2.10
1113 1133 7.346698 TGGATCAGAAGGAATGATAACTCTTCT 59.653 37.037 0.00 0.00 43.16 2.85
1114 1134 7.504403 TGGATCAGAAGGAATGATAACTCTTC 58.496 38.462 0.00 0.00 37.52 2.87
1115 1135 7.443302 TGGATCAGAAGGAATGATAACTCTT 57.557 36.000 0.00 0.00 37.52 2.85
1116 1136 7.630005 ATGGATCAGAAGGAATGATAACTCT 57.370 36.000 0.00 0.00 37.52 3.24
1234 2912 1.779061 TTGGGCTTCTCTTCGGGCTT 61.779 55.000 0.00 0.00 0.00 4.35
1667 3363 5.126545 GGGTTCCAATTATTTACCCTGTCAC 59.873 44.000 10.65 0.00 44.10 3.67
1738 3434 1.599542 GCATAAGAACCACCGATCAGC 59.400 52.381 0.00 0.00 0.00 4.26
1801 3507 5.294060 CAGCACAAACCAAAACTTTTATGCT 59.706 36.000 0.00 0.00 40.16 3.79
1809 3515 1.899142 ACCACAGCACAAACCAAAACT 59.101 42.857 0.00 0.00 0.00 2.66
1850 3556 8.792830 AACTGAAATTAGCTAGTCTGCATTTA 57.207 30.769 0.00 0.00 34.99 1.40
1851 3557 7.391554 TGAACTGAAATTAGCTAGTCTGCATTT 59.608 33.333 0.00 0.00 34.99 2.32
1852 3558 6.881065 TGAACTGAAATTAGCTAGTCTGCATT 59.119 34.615 0.00 0.00 34.99 3.56
1864 3570 8.783093 TCTTAACCACATGTGAACTGAAATTAG 58.217 33.333 27.46 8.00 0.00 1.73
1865 3571 8.684386 TCTTAACCACATGTGAACTGAAATTA 57.316 30.769 27.46 8.94 0.00 1.40
1878 3584 7.873719 TGTTATACCCATTCTTAACCACATG 57.126 36.000 0.00 0.00 0.00 3.21
1901 3607 2.787601 CCAAATCTGGCAATCCGATG 57.212 50.000 0.00 0.00 35.39 3.84
1952 3658 7.496920 CAGCCTGAAATCACTCAGACATAAATA 59.503 37.037 2.18 0.00 44.82 1.40
1959 3665 1.736681 GCAGCCTGAAATCACTCAGAC 59.263 52.381 0.00 0.00 44.82 3.51
1984 3690 4.759183 GTCTCCATCAATTCTAATCCAGGC 59.241 45.833 0.00 0.00 0.00 4.85
1997 3703 3.678289 CATGGTCTGTTGTCTCCATCAA 58.322 45.455 0.00 0.00 38.43 2.57
2006 3712 1.151221 TGGCAGCATGGTCTGTTGT 59.849 52.632 0.00 0.00 38.27 3.32
2122 3828 0.514691 GACAGAGGAAGTGCGCAAAG 59.485 55.000 14.00 0.00 0.00 2.77
2123 3829 0.884704 GGACAGAGGAAGTGCGCAAA 60.885 55.000 14.00 0.00 0.00 3.68
2124 3830 1.301716 GGACAGAGGAAGTGCGCAA 60.302 57.895 14.00 0.00 0.00 4.85
2125 3831 2.210013 AGGACAGAGGAAGTGCGCA 61.210 57.895 5.66 5.66 32.12 6.09
2126 3832 1.739562 CAGGACAGAGGAAGTGCGC 60.740 63.158 0.00 0.00 32.12 6.09
2127 3833 0.668706 CACAGGACAGAGGAAGTGCG 60.669 60.000 0.00 0.00 32.12 5.34
2128 3834 0.952984 GCACAGGACAGAGGAAGTGC 60.953 60.000 0.00 0.00 44.31 4.40
2129 3835 0.394192 TGCACAGGACAGAGGAAGTG 59.606 55.000 0.00 0.00 0.00 3.16
2130 3836 0.394565 GTGCACAGGACAGAGGAAGT 59.605 55.000 13.17 0.00 0.00 3.01
2131 3837 0.683973 AGTGCACAGGACAGAGGAAG 59.316 55.000 21.04 0.00 0.00 3.46
2132 3838 0.394192 CAGTGCACAGGACAGAGGAA 59.606 55.000 21.04 0.00 0.00 3.36
2133 3839 0.760567 ACAGTGCACAGGACAGAGGA 60.761 55.000 21.04 0.00 0.00 3.71
2134 3840 0.320247 GACAGTGCACAGGACAGAGG 60.320 60.000 21.04 0.00 0.00 3.69
2135 3841 0.390492 TGACAGTGCACAGGACAGAG 59.610 55.000 21.04 0.62 0.00 3.35
2136 3842 0.829990 TTGACAGTGCACAGGACAGA 59.170 50.000 21.04 5.87 0.00 3.41
2137 3843 1.224075 CTTGACAGTGCACAGGACAG 58.776 55.000 21.04 5.30 0.00 3.51
2138 3844 0.179048 CCTTGACAGTGCACAGGACA 60.179 55.000 21.04 14.00 0.00 4.02
2139 3845 0.106708 TCCTTGACAGTGCACAGGAC 59.893 55.000 21.04 11.49 0.00 3.85
2140 3846 0.836606 TTCCTTGACAGTGCACAGGA 59.163 50.000 21.04 18.54 0.00 3.86
2141 3847 1.679139 TTTCCTTGACAGTGCACAGG 58.321 50.000 21.04 16.40 0.00 4.00
2142 3848 3.781079 TTTTTCCTTGACAGTGCACAG 57.219 42.857 21.04 14.44 0.00 3.66
2143 3849 4.734398 AATTTTTCCTTGACAGTGCACA 57.266 36.364 21.04 0.00 0.00 4.57
2144 3850 6.273071 AGTAAATTTTTCCTTGACAGTGCAC 58.727 36.000 9.40 9.40 0.00 4.57
2145 3851 6.321181 AGAGTAAATTTTTCCTTGACAGTGCA 59.679 34.615 0.00 0.00 0.00 4.57
2146 3852 6.638468 CAGAGTAAATTTTTCCTTGACAGTGC 59.362 38.462 0.00 0.00 0.00 4.40
2147 3853 7.707104 ACAGAGTAAATTTTTCCTTGACAGTG 58.293 34.615 0.00 0.00 0.00 3.66
2252 3965 2.989422 AACGCAAAAGTGGATAGCAC 57.011 45.000 0.00 0.00 0.00 4.40
2255 3968 5.277825 TGTGAAAAACGCAAAAGTGGATAG 58.722 37.500 0.00 0.00 35.99 2.08
2260 3973 3.061831 TGCATGTGAAAAACGCAAAAGTG 59.938 39.130 0.00 0.00 42.43 3.16
2288 4001 9.878599 ATACTTCAATTAAAGTGTCAAAACGAG 57.121 29.630 4.10 0.00 39.74 4.18
2314 4030 4.161565 AGTGGATTGTACAATCTAGGCGAA 59.838 41.667 35.55 17.24 44.90 4.70
2367 4083 8.583810 TGTGTATAGCTTGTTTATTACGATCC 57.416 34.615 0.00 0.00 0.00 3.36
2404 4120 1.623973 GACGAGAAAACGGCGAAGGG 61.624 60.000 16.62 0.00 37.61 3.95
2412 4128 8.928844 AAAACAACTATATTGACGAGAAAACG 57.071 30.769 0.00 0.00 39.31 3.60
2418 4134 6.091713 ACCGGAAAAACAACTATATTGACGAG 59.908 38.462 9.46 0.00 0.00 4.18
2425 4141 4.157105 GCCACACCGGAAAAACAACTATAT 59.843 41.667 9.46 0.00 36.56 0.86
2427 4143 2.295070 GCCACACCGGAAAAACAACTAT 59.705 45.455 9.46 0.00 36.56 2.12
2655 4393 4.823419 CGGCGCCATGACCGGTTA 62.823 66.667 28.98 4.40 45.74 2.85
2733 4471 1.342174 AGGAAAACATGGCAGCACTTG 59.658 47.619 0.00 0.00 0.00 3.16
2769 4507 2.120232 GTCGGCAAGATACTCGATGTG 58.880 52.381 0.00 0.00 34.13 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.