Multiple sequence alignment - TraesCS5B01G230100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G230100 chr5B 100.000 3545 0 0 1 3545 407122699 407126243 0.000000e+00 6547.0
1 TraesCS5B01G230100 chr5B 81.169 154 26 3 569 721 462856699 462856850 1.730000e-23 121.0
2 TraesCS5B01G230100 chr5A 96.691 2841 74 12 720 3545 447365274 447368109 0.000000e+00 4708.0
3 TraesCS5B01G230100 chr5A 91.667 108 8 1 405 512 447365142 447365248 7.930000e-32 148.0
4 TraesCS5B01G230100 chr5A 83.721 86 13 1 151 236 413234888 413234972 2.930000e-11 80.5
5 TraesCS5B01G230100 chr5D 96.400 2833 79 11 726 3545 344696611 344693789 0.000000e+00 4645.0
6 TraesCS5B01G230100 chr5D 82.353 544 51 25 4 512 344697176 344696643 7.030000e-117 431.0
7 TraesCS5B01G230100 chr1B 85.714 154 20 2 573 724 1847333 1847486 1.020000e-35 161.0
8 TraesCS5B01G230100 chr2B 86.000 150 18 3 574 721 265992938 265993086 1.320000e-34 158.0
9 TraesCS5B01G230100 chrUn 84.768 151 21 2 576 724 121519218 121519368 2.200000e-32 150.0
10 TraesCS5B01G230100 chrUn 82.781 151 24 2 576 725 40245905 40246054 2.220000e-27 134.0
11 TraesCS5B01G230100 chr4B 84.868 152 20 3 576 724 396236622 396236471 2.200000e-32 150.0
12 TraesCS5B01G230100 chr6B 86.777 121 15 1 576 695 533596152 533596272 2.220000e-27 134.0
13 TraesCS5B01G230100 chr2A 77.533 227 42 6 1697 1919 775615481 775615260 1.030000e-25 128.0
14 TraesCS5B01G230100 chr7D 82.000 150 25 2 577 724 28651642 28651493 3.720000e-25 126.0
15 TraesCS5B01G230100 chr3B 80.645 155 26 4 573 724 677745813 677745966 2.240000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G230100 chr5B 407122699 407126243 3544 False 6547 6547 100.0000 1 3545 1 chr5B.!!$F1 3544
1 TraesCS5B01G230100 chr5A 447365142 447368109 2967 False 2428 4708 94.1790 405 3545 2 chr5A.!!$F2 3140
2 TraesCS5B01G230100 chr5D 344693789 344697176 3387 True 2538 4645 89.3765 4 3545 2 chr5D.!!$R1 3541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 678 0.033504 GAGAAACTCCACGAGCACCA 59.966 55.0 0.0 0.0 32.04 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2587 2622 0.240945 AAACTTTGAAGATGCGCCCG 59.759 50.0 4.18 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.566360 GCACAAAGCTTAAAGCAAAAGTCA 59.434 37.500 0.00 0.00 45.56 3.41
35 36 4.893424 AGCTTAAAGCAAAAGTCAACGA 57.107 36.364 0.00 0.00 45.56 3.85
43 44 4.754322 AGCAAAAGTCAACGACCAAAAAT 58.246 34.783 0.00 0.00 32.18 1.82
59 60 5.298347 CCAAAAATGCAATTGGCCAAAAAT 58.702 33.333 24.71 9.24 43.89 1.82
61 62 5.786264 AAAATGCAATTGGCCAAAAATCA 57.214 30.435 24.71 17.59 43.89 2.57
71 72 5.956068 TGGCCAAAAATCAAATTTTAGGC 57.044 34.783 0.61 13.03 41.30 3.93
77 78 7.271008 GCCAAAAATCAAATTTTAGGCGATTTG 59.729 33.333 11.87 10.37 41.30 2.32
100 101 7.332213 TGCATAGCTAATAAAGTGATGCAAA 57.668 32.000 11.52 0.00 44.99 3.68
149 167 5.403766 CCAATAGCAAAAACGCATACAAACA 59.596 36.000 0.00 0.00 0.00 2.83
205 223 4.820173 CCCAATAGGAAAATCGACTTACCC 59.180 45.833 0.00 0.00 38.24 3.69
214 232 1.886886 TCGACTTACCCCAAACAAGC 58.113 50.000 0.00 0.00 0.00 4.01
229 247 4.777140 AACAAGCGCAAGTCAAAAATTC 57.223 36.364 11.47 0.00 41.68 2.17
232 250 3.715628 AGCGCAAGTCAAAAATTCAGT 57.284 38.095 11.47 0.00 41.68 3.41
236 258 4.613031 GCGCAAGTCAAAAATTCAGTCTAC 59.387 41.667 0.30 0.00 41.68 2.59
240 262 7.417612 GCAAGTCAAAAATTCAGTCTACAAGA 58.582 34.615 0.00 0.00 0.00 3.02
241 263 7.915397 GCAAGTCAAAAATTCAGTCTACAAGAA 59.085 33.333 0.00 0.00 0.00 2.52
258 280 3.751479 AGAAAAATCACCCCAAACAGC 57.249 42.857 0.00 0.00 0.00 4.40
260 282 1.698506 AAAATCACCCCAAACAGCGA 58.301 45.000 0.00 0.00 0.00 4.93
261 283 1.923356 AAATCACCCCAAACAGCGAT 58.077 45.000 0.00 0.00 0.00 4.58
266 288 2.159382 CACCCCAAACAGCGATAAGTT 58.841 47.619 0.00 0.00 0.00 2.66
267 289 3.008157 TCACCCCAAACAGCGATAAGTTA 59.992 43.478 0.00 0.00 0.00 2.24
276 298 7.273381 CCAAACAGCGATAAGTTAAAAATCCAG 59.727 37.037 0.00 0.00 0.00 3.86
278 300 5.648092 ACAGCGATAAGTTAAAAATCCAGCT 59.352 36.000 0.00 0.00 0.00 4.24
302 325 7.695201 GCTTACGAAATAATTGACTTACCCAAC 59.305 37.037 0.00 0.00 0.00 3.77
318 341 1.152052 AACCAGGGGCAAGCCAAAT 60.152 52.632 13.87 0.00 37.98 2.32
319 342 0.116143 AACCAGGGGCAAGCCAAATA 59.884 50.000 13.87 0.00 37.98 1.40
321 344 1.273781 ACCAGGGGCAAGCCAAATATT 60.274 47.619 13.87 0.00 37.98 1.28
347 370 5.119125 GCATAAGAAAGCCATGAAACAACAC 59.881 40.000 0.00 0.00 0.00 3.32
352 381 5.351189 AGAAAGCCATGAAACAACACAAAAC 59.649 36.000 0.00 0.00 0.00 2.43
354 383 4.573900 AGCCATGAAACAACACAAAACAA 58.426 34.783 0.00 0.00 0.00 2.83
369 398 7.264221 ACACAAAACAATAGCACAAATCTTGA 58.736 30.769 0.00 0.00 0.00 3.02
403 436 4.994852 CGGTCAGAAAAGTGACTTATCCAA 59.005 41.667 0.00 0.00 45.34 3.53
422 455 6.546428 TCCAAATTTAAAAACCAGGTGACA 57.454 33.333 0.00 0.00 0.00 3.58
439 472 9.645059 CCAGGTGACATACATATATCTAAAGTG 57.355 37.037 0.00 0.00 0.00 3.16
515 548 8.840833 TTTAGTGACAAGTGTTATGATTAGCA 57.159 30.769 0.00 0.00 0.00 3.49
516 549 6.727824 AGTGACAAGTGTTATGATTAGCAC 57.272 37.500 0.00 0.00 39.18 4.40
518 551 7.611770 AGTGACAAGTGTTATGATTAGCACTA 58.388 34.615 3.44 0.00 45.71 2.74
519 552 8.260818 AGTGACAAGTGTTATGATTAGCACTAT 58.739 33.333 3.44 0.00 45.71 2.12
520 553 8.331022 GTGACAAGTGTTATGATTAGCACTATG 58.669 37.037 3.44 6.72 45.71 2.23
521 554 7.495606 TGACAAGTGTTATGATTAGCACTATGG 59.504 37.037 3.44 0.89 45.71 2.74
522 555 7.338710 ACAAGTGTTATGATTAGCACTATGGT 58.661 34.615 3.44 1.37 45.71 3.55
523 556 7.280876 ACAAGTGTTATGATTAGCACTATGGTG 59.719 37.037 4.57 4.57 45.71 4.17
524 557 6.291377 AGTGTTATGATTAGCACTATGGTGG 58.709 40.000 11.53 0.00 44.93 4.61
525 558 7.583416 AAGTGTTATGATTAGCACTATGGTGGT 60.583 37.037 18.23 18.23 45.71 4.16
546 579 7.013942 GGTGGTTGTCAAATAGTTTTCTTACCT 59.986 37.037 0.00 0.00 0.00 3.08
567 601 7.010339 ACCTATCCTATCTATCTTTTGGTGC 57.990 40.000 0.00 0.00 0.00 5.01
568 602 6.558775 ACCTATCCTATCTATCTTTTGGTGCA 59.441 38.462 0.00 0.00 0.00 4.57
569 603 7.238514 ACCTATCCTATCTATCTTTTGGTGCAT 59.761 37.037 0.00 0.00 0.00 3.96
570 604 7.551974 CCTATCCTATCTATCTTTTGGTGCATG 59.448 40.741 0.00 0.00 0.00 4.06
571 605 5.065914 TCCTATCTATCTTTTGGTGCATGC 58.934 41.667 11.82 11.82 0.00 4.06
572 606 4.823442 CCTATCTATCTTTTGGTGCATGCA 59.177 41.667 18.46 18.46 0.00 3.96
573 607 5.475909 CCTATCTATCTTTTGGTGCATGCAT 59.524 40.000 25.64 7.59 0.00 3.96
574 608 6.656270 CCTATCTATCTTTTGGTGCATGCATA 59.344 38.462 25.64 13.65 0.00 3.14
575 609 6.964807 ATCTATCTTTTGGTGCATGCATAA 57.035 33.333 25.64 18.87 0.00 1.90
576 610 6.772360 TCTATCTTTTGGTGCATGCATAAA 57.228 33.333 25.64 23.24 0.00 1.40
577 611 7.167924 TCTATCTTTTGGTGCATGCATAAAA 57.832 32.000 28.56 28.56 0.00 1.52
578 612 7.609960 TCTATCTTTTGGTGCATGCATAAAAA 58.390 30.769 29.36 28.54 30.51 1.94
598 632 2.853235 AAACGAGACTAACCCAAGGG 57.147 50.000 2.91 2.91 42.03 3.95
599 633 0.323957 AACGAGACTAACCCAAGGGC 59.676 55.000 4.70 0.00 39.32 5.19
600 634 0.544595 ACGAGACTAACCCAAGGGCT 60.545 55.000 4.70 0.00 39.32 5.19
601 635 1.272872 ACGAGACTAACCCAAGGGCTA 60.273 52.381 4.70 0.00 39.32 3.93
602 636 1.829222 CGAGACTAACCCAAGGGCTAA 59.171 52.381 4.70 0.00 39.32 3.09
603 637 2.434702 CGAGACTAACCCAAGGGCTAAT 59.565 50.000 4.70 0.00 39.32 1.73
604 638 3.492829 CGAGACTAACCCAAGGGCTAATC 60.493 52.174 4.70 0.00 39.32 1.75
605 639 2.778270 AGACTAACCCAAGGGCTAATCC 59.222 50.000 4.70 0.00 39.32 3.01
606 640 2.778270 GACTAACCCAAGGGCTAATCCT 59.222 50.000 4.70 0.00 39.32 3.24
608 642 4.377134 ACTAACCCAAGGGCTAATCCTTA 58.623 43.478 4.70 0.00 44.70 2.69
609 643 4.982302 ACTAACCCAAGGGCTAATCCTTAT 59.018 41.667 4.70 0.00 44.70 1.73
610 644 4.899898 AACCCAAGGGCTAATCCTTATT 57.100 40.909 4.70 0.00 44.70 1.40
611 645 4.184649 ACCCAAGGGCTAATCCTTATTG 57.815 45.455 4.70 0.00 44.70 1.90
612 646 3.117131 ACCCAAGGGCTAATCCTTATTGG 60.117 47.826 4.70 0.00 44.70 3.16
613 647 2.893489 CCAAGGGCTAATCCTTATTGGC 59.107 50.000 0.00 0.00 44.70 4.52
643 677 2.828933 GAGAAACTCCACGAGCACC 58.171 57.895 0.00 0.00 32.04 5.01
644 678 0.033504 GAGAAACTCCACGAGCACCA 59.966 55.000 0.00 0.00 32.04 4.17
645 679 0.249911 AGAAACTCCACGAGCACCAC 60.250 55.000 0.00 0.00 32.04 4.16
646 680 0.531974 GAAACTCCACGAGCACCACA 60.532 55.000 0.00 0.00 32.04 4.17
647 681 0.814010 AAACTCCACGAGCACCACAC 60.814 55.000 0.00 0.00 32.04 3.82
648 682 1.966901 AACTCCACGAGCACCACACA 61.967 55.000 0.00 0.00 32.04 3.72
649 683 1.004560 CTCCACGAGCACCACACAT 60.005 57.895 0.00 0.00 0.00 3.21
650 684 0.603707 CTCCACGAGCACCACACATT 60.604 55.000 0.00 0.00 0.00 2.71
651 685 0.602638 TCCACGAGCACCACACATTC 60.603 55.000 0.00 0.00 0.00 2.67
652 686 0.884259 CCACGAGCACCACACATTCA 60.884 55.000 0.00 0.00 0.00 2.57
653 687 0.943673 CACGAGCACCACACATTCAA 59.056 50.000 0.00 0.00 0.00 2.69
654 688 1.069703 CACGAGCACCACACATTCAAG 60.070 52.381 0.00 0.00 0.00 3.02
655 689 0.518636 CGAGCACCACACATTCAAGG 59.481 55.000 0.00 0.00 0.00 3.61
656 690 0.242017 GAGCACCACACATTCAAGGC 59.758 55.000 0.00 0.00 0.00 4.35
657 691 1.081242 GCACCACACATTCAAGGCG 60.081 57.895 0.00 0.00 0.00 5.52
658 692 1.795170 GCACCACACATTCAAGGCGT 61.795 55.000 0.00 0.00 0.00 5.68
659 693 0.040157 CACCACACATTCAAGGCGTG 60.040 55.000 0.00 0.00 36.70 5.34
660 694 0.179032 ACCACACATTCAAGGCGTGA 60.179 50.000 0.00 0.00 34.69 4.35
661 695 1.167851 CCACACATTCAAGGCGTGAT 58.832 50.000 3.45 0.00 35.70 3.06
662 696 1.541147 CCACACATTCAAGGCGTGATT 59.459 47.619 3.45 0.00 35.70 2.57
663 697 2.030007 CCACACATTCAAGGCGTGATTT 60.030 45.455 3.45 0.00 35.70 2.17
664 698 2.981805 CACACATTCAAGGCGTGATTTG 59.018 45.455 3.45 7.98 35.70 2.32
665 699 2.884012 ACACATTCAAGGCGTGATTTGA 59.116 40.909 16.59 2.14 35.70 2.69
666 700 3.317711 ACACATTCAAGGCGTGATTTGAA 59.682 39.130 16.59 10.11 44.60 2.69
667 701 3.670055 CACATTCAAGGCGTGATTTGAAC 59.330 43.478 16.59 0.00 43.66 3.18
668 702 3.569701 ACATTCAAGGCGTGATTTGAACT 59.430 39.130 16.59 0.00 43.66 3.01
669 703 4.037923 ACATTCAAGGCGTGATTTGAACTT 59.962 37.500 16.59 0.27 43.66 2.66
670 704 3.624326 TCAAGGCGTGATTTGAACTTG 57.376 42.857 0.00 0.00 37.31 3.16
671 705 2.293122 TCAAGGCGTGATTTGAACTTGG 59.707 45.455 0.00 0.00 36.78 3.61
672 706 1.247567 AGGCGTGATTTGAACTTGGG 58.752 50.000 0.00 0.00 0.00 4.12
673 707 0.958822 GGCGTGATTTGAACTTGGGT 59.041 50.000 0.00 0.00 0.00 4.51
674 708 1.335872 GGCGTGATTTGAACTTGGGTG 60.336 52.381 0.00 0.00 0.00 4.61
675 709 1.606668 GCGTGATTTGAACTTGGGTGA 59.393 47.619 0.00 0.00 0.00 4.02
676 710 2.350772 GCGTGATTTGAACTTGGGTGAG 60.351 50.000 0.00 0.00 0.00 3.51
677 711 3.138304 CGTGATTTGAACTTGGGTGAGA 58.862 45.455 0.00 0.00 0.00 3.27
678 712 3.753272 CGTGATTTGAACTTGGGTGAGAT 59.247 43.478 0.00 0.00 0.00 2.75
679 713 4.378770 CGTGATTTGAACTTGGGTGAGATG 60.379 45.833 0.00 0.00 0.00 2.90
680 714 4.081406 TGATTTGAACTTGGGTGAGATGG 58.919 43.478 0.00 0.00 0.00 3.51
681 715 1.909700 TTGAACTTGGGTGAGATGGC 58.090 50.000 0.00 0.00 0.00 4.40
682 716 0.770499 TGAACTTGGGTGAGATGGCA 59.230 50.000 0.00 0.00 0.00 4.92
683 717 1.271543 TGAACTTGGGTGAGATGGCAG 60.272 52.381 0.00 0.00 0.00 4.85
684 718 0.610232 AACTTGGGTGAGATGGCAGC 60.610 55.000 0.00 0.00 35.63 5.25
685 719 1.001764 CTTGGGTGAGATGGCAGCA 60.002 57.895 5.19 0.00 37.99 4.41
686 720 0.609957 CTTGGGTGAGATGGCAGCAA 60.610 55.000 5.19 0.00 37.99 3.91
687 721 0.895100 TTGGGTGAGATGGCAGCAAC 60.895 55.000 5.19 2.46 37.99 4.17
688 722 2.048603 GGGTGAGATGGCAGCAACC 61.049 63.158 16.60 16.60 37.99 3.77
689 723 1.001641 GGTGAGATGGCAGCAACCT 60.002 57.895 17.34 0.00 36.35 3.50
690 724 1.028868 GGTGAGATGGCAGCAACCTC 61.029 60.000 17.34 8.08 36.35 3.85
691 725 0.321919 GTGAGATGGCAGCAACCTCA 60.322 55.000 5.19 0.00 0.00 3.86
692 726 0.035725 TGAGATGGCAGCAACCTCAG 60.036 55.000 5.19 0.00 31.15 3.35
693 727 1.375098 GAGATGGCAGCAACCTCAGC 61.375 60.000 5.19 0.00 0.00 4.26
694 728 1.378250 GATGGCAGCAACCTCAGCT 60.378 57.895 0.00 0.00 44.62 4.24
695 729 0.107508 GATGGCAGCAACCTCAGCTA 60.108 55.000 0.00 0.00 41.14 3.32
696 730 0.393537 ATGGCAGCAACCTCAGCTAC 60.394 55.000 0.00 0.00 41.14 3.58
697 731 1.746991 GGCAGCAACCTCAGCTACC 60.747 63.158 0.00 0.00 41.14 3.18
698 732 2.103042 GCAGCAACCTCAGCTACCG 61.103 63.158 0.00 0.00 41.14 4.02
699 733 1.591703 CAGCAACCTCAGCTACCGA 59.408 57.895 0.00 0.00 41.14 4.69
700 734 0.459237 CAGCAACCTCAGCTACCGAG 60.459 60.000 0.00 0.00 41.14 4.63
701 735 0.900647 AGCAACCTCAGCTACCGAGT 60.901 55.000 0.00 0.00 41.32 4.18
702 736 0.037232 GCAACCTCAGCTACCGAGTT 60.037 55.000 0.00 0.00 0.00 3.01
703 737 1.203994 GCAACCTCAGCTACCGAGTTA 59.796 52.381 0.00 0.00 0.00 2.24
704 738 2.877335 CAACCTCAGCTACCGAGTTAC 58.123 52.381 0.00 0.00 0.00 2.50
705 739 1.093159 ACCTCAGCTACCGAGTTACG 58.907 55.000 0.00 0.00 42.18 3.18
714 748 2.505557 CGAGTTACGGGTCCACGC 60.506 66.667 0.00 0.00 38.46 5.34
715 749 2.125793 GAGTTACGGGTCCACGCC 60.126 66.667 0.00 0.00 37.37 5.68
716 750 3.654173 GAGTTACGGGTCCACGCCC 62.654 68.421 0.00 0.00 45.21 6.13
717 751 4.765449 GTTACGGGTCCACGCCCC 62.765 72.222 0.00 0.00 45.91 5.80
865 899 1.821061 CTGACGCTCCCTTCACCTGT 61.821 60.000 0.00 0.00 0.00 4.00
897 931 4.677182 ACTGCAAGATAATCCAAAACCCT 58.323 39.130 0.00 0.00 37.43 4.34
923 957 3.998341 GACACTACGCTGTTATCCCAAAA 59.002 43.478 0.00 0.00 0.00 2.44
1086 1121 2.433994 GCAGCTCCTCTCCCTCCTG 61.434 68.421 0.00 0.00 0.00 3.86
1863 1898 1.183030 TCATCCAGACGACCAACCGT 61.183 55.000 0.00 0.00 46.43 4.83
2025 2060 2.207768 AACCACCGGGGGAAGGTA 59.792 61.111 34.83 0.00 40.59 3.08
2103 2138 0.370273 GCATCATCGTGTTCACGACC 59.630 55.000 26.16 11.39 45.30 4.79
2247 2282 2.821366 GGCGACCAGGACATGCTG 60.821 66.667 0.00 0.00 0.00 4.41
2582 2617 2.031857 CGTGCGTTTTAGGTTAGGCAAA 60.032 45.455 0.00 0.00 36.97 3.68
2584 2619 4.552355 GTGCGTTTTAGGTTAGGCAAAAT 58.448 39.130 0.00 0.00 36.97 1.82
2587 2622 6.471198 GTGCGTTTTAGGTTAGGCAAAATATC 59.529 38.462 0.00 0.00 36.97 1.63
2589 2624 6.196571 CGTTTTAGGTTAGGCAAAATATCGG 58.803 40.000 0.00 0.00 0.00 4.18
2614 2650 6.197096 GGCGCATCTTCAAAGTTTAATGTATG 59.803 38.462 10.83 0.00 0.00 2.39
2664 2700 1.605457 GCCATGATCGACGGCTTCATA 60.605 52.381 11.51 0.00 42.78 2.15
2846 2900 2.282110 CCGGTTGCACCATGACCA 60.282 61.111 5.40 0.00 38.47 4.02
2908 2962 0.875059 GTTCCTTTCGAACCTGCAGG 59.125 55.000 31.60 31.60 44.46 4.85
2999 3053 1.962822 TTGGCAGAAGCACAGCTCG 60.963 57.895 0.00 0.00 44.61 5.03
3084 3138 2.030274 ACATATTCGCCATGATCGACGA 60.030 45.455 0.00 0.00 35.51 4.20
3089 3143 1.153647 GCCATGATCGACGACCACA 60.154 57.895 0.00 1.45 0.00 4.17
3155 3209 1.018910 CATGATCAACGATGCCTGCA 58.981 50.000 0.00 0.00 0.00 4.41
3171 3228 2.549282 CAACGACGACGCAAAGGG 59.451 61.111 7.30 0.00 43.96 3.95
3433 3490 2.683933 AACCTCGTCGGCCTCCAT 60.684 61.111 0.00 0.00 35.61 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.566360 TGACTTTTGCTTTAAGCTTTGTGC 59.434 37.500 18.20 7.28 42.97 4.57
9 10 6.469322 GTTGACTTTTGCTTTAAGCTTTGTG 58.531 36.000 18.20 7.15 42.97 3.33
10 11 5.288472 CGTTGACTTTTGCTTTAAGCTTTGT 59.712 36.000 18.20 10.99 42.97 2.83
11 12 5.514914 TCGTTGACTTTTGCTTTAAGCTTTG 59.485 36.000 18.20 8.10 42.97 2.77
12 13 5.515270 GTCGTTGACTTTTGCTTTAAGCTTT 59.485 36.000 18.20 0.00 42.97 3.51
15 16 3.729217 GGTCGTTGACTTTTGCTTTAAGC 59.271 43.478 10.38 10.38 35.75 3.09
31 32 2.547634 GCCAATTGCATTTTTGGTCGTT 59.452 40.909 19.11 0.00 43.54 3.85
35 36 2.653234 TGGCCAATTGCATTTTTGGT 57.347 40.000 19.11 0.00 43.54 3.67
43 44 5.786264 AATTTGATTTTTGGCCAATTGCA 57.214 30.435 21.26 12.51 43.89 4.08
54 55 7.869800 TGCAAATCGCCTAAAATTTGATTTTT 58.130 26.923 10.99 0.00 42.71 1.94
59 60 5.748152 GCTATGCAAATCGCCTAAAATTTGA 59.252 36.000 10.99 0.00 42.71 2.69
61 62 5.906073 AGCTATGCAAATCGCCTAAAATTT 58.094 33.333 0.00 0.00 41.33 1.82
71 72 7.269937 GCATCACTTTATTAGCTATGCAAATCG 59.730 37.037 7.30 0.00 41.50 3.34
77 78 8.633075 TTTTTGCATCACTTTATTAGCTATGC 57.367 30.769 5.55 5.55 41.89 3.14
125 143 5.403766 TGTTTGTATGCGTTTTTGCTATTGG 59.596 36.000 0.00 0.00 35.36 3.16
128 146 7.470289 TTTTGTTTGTATGCGTTTTTGCTAT 57.530 28.000 0.00 0.00 35.36 2.97
129 147 6.887376 TTTTGTTTGTATGCGTTTTTGCTA 57.113 29.167 0.00 0.00 35.36 3.49
130 148 5.786401 TTTTGTTTGTATGCGTTTTTGCT 57.214 30.435 0.00 0.00 35.36 3.91
159 177 1.535028 TGAAGCCTGTTACACATTGCG 59.465 47.619 0.00 0.00 32.92 4.85
190 208 5.441709 TTGTTTGGGGTAAGTCGATTTTC 57.558 39.130 0.00 0.00 0.00 2.29
205 223 1.919918 TTTGACTTGCGCTTGTTTGG 58.080 45.000 9.73 0.00 0.00 3.28
214 232 5.747565 TGTAGACTGAATTTTTGACTTGCG 58.252 37.500 0.00 0.00 0.00 4.85
229 247 5.070001 TGGGGTGATTTTTCTTGTAGACTG 58.930 41.667 0.00 0.00 0.00 3.51
232 250 5.894393 TGTTTGGGGTGATTTTTCTTGTAGA 59.106 36.000 0.00 0.00 0.00 2.59
236 258 3.809279 GCTGTTTGGGGTGATTTTTCTTG 59.191 43.478 0.00 0.00 0.00 3.02
240 262 2.035632 TCGCTGTTTGGGGTGATTTTT 58.964 42.857 0.00 0.00 0.00 1.94
241 263 1.698506 TCGCTGTTTGGGGTGATTTT 58.301 45.000 0.00 0.00 0.00 1.82
244 266 2.026262 ACTTATCGCTGTTTGGGGTGAT 60.026 45.455 0.00 0.00 36.73 3.06
246 268 1.821216 ACTTATCGCTGTTTGGGGTG 58.179 50.000 0.00 0.00 0.00 4.61
258 280 7.902032 TCGTAAGCTGGATTTTTAACTTATCG 58.098 34.615 0.00 0.00 37.18 2.92
267 289 9.353999 GTCAATTATTTCGTAAGCTGGATTTTT 57.646 29.630 0.00 0.00 37.18 1.94
276 298 7.311364 TGGGTAAGTCAATTATTTCGTAAGC 57.689 36.000 0.00 0.00 37.18 3.09
278 300 7.664731 TGGTTGGGTAAGTCAATTATTTCGTAA 59.335 33.333 0.00 0.00 0.00 3.18
302 325 1.139455 CAATATTTGGCTTGCCCCTGG 59.861 52.381 9.35 0.00 0.00 4.45
323 346 5.119125 GTGTTGTTTCATGGCTTTCTTATGC 59.881 40.000 0.00 0.00 0.00 3.14
325 348 6.403866 TGTGTTGTTTCATGGCTTTCTTAT 57.596 33.333 0.00 0.00 0.00 1.73
326 349 5.843673 TGTGTTGTTTCATGGCTTTCTTA 57.156 34.783 0.00 0.00 0.00 2.10
328 351 4.734398 TTGTGTTGTTTCATGGCTTTCT 57.266 36.364 0.00 0.00 0.00 2.52
329 352 5.121454 TGTTTTGTGTTGTTTCATGGCTTTC 59.879 36.000 0.00 0.00 0.00 2.62
330 353 4.999950 TGTTTTGTGTTGTTTCATGGCTTT 59.000 33.333 0.00 0.00 0.00 3.51
369 398 7.860872 GTCACTTTTCTGACCGTTGAATATTTT 59.139 33.333 0.00 0.00 35.44 1.82
373 402 5.607477 AGTCACTTTTCTGACCGTTGAATA 58.393 37.500 0.00 0.00 41.44 1.75
375 404 3.869065 AGTCACTTTTCTGACCGTTGAA 58.131 40.909 0.00 0.00 41.44 2.69
376 405 3.536956 AGTCACTTTTCTGACCGTTGA 57.463 42.857 0.00 0.00 41.44 3.18
377 406 5.107065 GGATAAGTCACTTTTCTGACCGTTG 60.107 44.000 7.79 0.00 41.44 4.10
379 408 4.039973 TGGATAAGTCACTTTTCTGACCGT 59.960 41.667 7.79 0.00 41.44 4.83
380 409 4.566004 TGGATAAGTCACTTTTCTGACCG 58.434 43.478 7.79 0.00 41.44 4.79
381 410 6.877611 TTTGGATAAGTCACTTTTCTGACC 57.122 37.500 7.79 0.00 41.44 4.02
391 424 9.203421 CCTGGTTTTTAAATTTGGATAAGTCAC 57.797 33.333 0.00 0.00 0.00 3.67
413 446 9.645059 CACTTTAGATATATGTATGTCACCTGG 57.355 37.037 0.00 0.00 0.00 4.45
460 493 8.082242 GTGTTGAAATGTGCTTTATAAAGGTCT 58.918 33.333 23.37 0.00 36.53 3.85
511 544 4.359434 TTTGACAACCACCATAGTGCTA 57.641 40.909 0.00 0.00 43.09 3.49
512 545 2.949177 TTGACAACCACCATAGTGCT 57.051 45.000 0.00 0.00 43.09 4.40
513 546 4.700213 ACTATTTGACAACCACCATAGTGC 59.300 41.667 8.14 0.00 43.09 4.40
514 547 6.817765 AACTATTTGACAACCACCATAGTG 57.182 37.500 9.27 0.00 44.12 2.74
515 548 7.724061 AGAAAACTATTTGACAACCACCATAGT 59.276 33.333 4.37 4.37 34.94 2.12
516 549 8.110860 AGAAAACTATTTGACAACCACCATAG 57.889 34.615 3.35 3.35 0.00 2.23
517 550 8.472007 AAGAAAACTATTTGACAACCACCATA 57.528 30.769 0.00 0.00 0.00 2.74
518 551 6.976934 AGAAAACTATTTGACAACCACCAT 57.023 33.333 0.00 0.00 0.00 3.55
519 552 6.783708 AAGAAAACTATTTGACAACCACCA 57.216 33.333 0.00 0.00 0.00 4.17
520 553 7.013942 AGGTAAGAAAACTATTTGACAACCACC 59.986 37.037 0.00 0.00 0.00 4.61
521 554 7.937649 AGGTAAGAAAACTATTTGACAACCAC 58.062 34.615 0.00 0.00 0.00 4.16
522 555 9.802039 ATAGGTAAGAAAACTATTTGACAACCA 57.198 29.630 0.00 0.00 0.00 3.67
546 579 6.881065 GCATGCACCAAAAGATAGATAGGATA 59.119 38.462 14.21 0.00 0.00 2.59
577 611 3.483421 CCCTTGGGTTAGTCTCGTTTTT 58.517 45.455 0.00 0.00 0.00 1.94
578 612 2.812983 GCCCTTGGGTTAGTCTCGTTTT 60.813 50.000 7.61 0.00 0.00 2.43
579 613 1.271217 GCCCTTGGGTTAGTCTCGTTT 60.271 52.381 7.61 0.00 0.00 3.60
580 614 0.323957 GCCCTTGGGTTAGTCTCGTT 59.676 55.000 7.61 0.00 0.00 3.85
581 615 0.544595 AGCCCTTGGGTTAGTCTCGT 60.545 55.000 7.61 0.00 0.00 4.18
582 616 1.481871 TAGCCCTTGGGTTAGTCTCG 58.518 55.000 7.61 0.00 34.28 4.04
583 617 3.181453 GGATTAGCCCTTGGGTTAGTCTC 60.181 52.174 18.97 10.61 34.28 3.36
584 618 2.778270 GGATTAGCCCTTGGGTTAGTCT 59.222 50.000 18.97 6.54 34.28 3.24
585 619 2.778270 AGGATTAGCCCTTGGGTTAGTC 59.222 50.000 13.88 13.88 37.37 2.59
586 620 2.859951 AGGATTAGCCCTTGGGTTAGT 58.140 47.619 7.61 2.39 37.37 2.24
587 621 3.953542 AAGGATTAGCCCTTGGGTTAG 57.046 47.619 7.61 0.00 44.41 2.34
588 622 5.399727 CCAATAAGGATTAGCCCTTGGGTTA 60.400 44.000 7.61 2.67 45.55 2.85
589 623 4.546674 CAATAAGGATTAGCCCTTGGGTT 58.453 43.478 7.61 3.76 45.55 4.11
590 624 3.117131 CCAATAAGGATTAGCCCTTGGGT 60.117 47.826 7.61 0.00 45.55 4.51
591 625 3.500343 CCAATAAGGATTAGCCCTTGGG 58.500 50.000 0.32 0.32 45.55 4.12
592 626 2.893489 GCCAATAAGGATTAGCCCTTGG 59.107 50.000 8.24 8.24 45.55 3.61
593 627 3.565307 TGCCAATAAGGATTAGCCCTTG 58.435 45.455 5.51 0.00 45.55 3.61
595 629 4.475919 AATGCCAATAAGGATTAGCCCT 57.524 40.909 0.00 0.00 41.22 5.19
596 630 5.551305 AAAATGCCAATAAGGATTAGCCC 57.449 39.130 0.00 0.00 41.22 5.19
625 659 0.033504 TGGTGCTCGTGGAGTTTCTC 59.966 55.000 0.00 0.00 31.39 2.87
626 660 0.249911 GTGGTGCTCGTGGAGTTTCT 60.250 55.000 0.00 0.00 31.39 2.52
627 661 0.531974 TGTGGTGCTCGTGGAGTTTC 60.532 55.000 0.00 0.00 31.39 2.78
628 662 0.814010 GTGTGGTGCTCGTGGAGTTT 60.814 55.000 0.00 0.00 31.39 2.66
629 663 1.227556 GTGTGGTGCTCGTGGAGTT 60.228 57.895 0.00 0.00 31.39 3.01
630 664 1.758440 ATGTGTGGTGCTCGTGGAGT 61.758 55.000 0.00 0.00 31.39 3.85
631 665 0.603707 AATGTGTGGTGCTCGTGGAG 60.604 55.000 0.00 0.00 0.00 3.86
632 666 0.602638 GAATGTGTGGTGCTCGTGGA 60.603 55.000 0.00 0.00 0.00 4.02
633 667 0.884259 TGAATGTGTGGTGCTCGTGG 60.884 55.000 0.00 0.00 0.00 4.94
634 668 0.943673 TTGAATGTGTGGTGCTCGTG 59.056 50.000 0.00 0.00 0.00 4.35
635 669 1.229428 CTTGAATGTGTGGTGCTCGT 58.771 50.000 0.00 0.00 0.00 4.18
636 670 0.518636 CCTTGAATGTGTGGTGCTCG 59.481 55.000 0.00 0.00 0.00 5.03
637 671 0.242017 GCCTTGAATGTGTGGTGCTC 59.758 55.000 0.00 0.00 0.00 4.26
638 672 1.518056 CGCCTTGAATGTGTGGTGCT 61.518 55.000 0.00 0.00 0.00 4.40
639 673 1.081242 CGCCTTGAATGTGTGGTGC 60.081 57.895 0.00 0.00 0.00 5.01
640 674 0.040157 CACGCCTTGAATGTGTGGTG 60.040 55.000 6.30 0.00 39.84 4.17
641 675 0.179032 TCACGCCTTGAATGTGTGGT 60.179 50.000 12.88 0.00 42.87 4.16
642 676 1.167851 ATCACGCCTTGAATGTGTGG 58.832 50.000 12.88 0.00 42.87 4.17
643 677 2.981805 CAAATCACGCCTTGAATGTGTG 59.018 45.455 7.67 7.67 43.75 3.82
644 678 2.884012 TCAAATCACGCCTTGAATGTGT 59.116 40.909 0.00 0.00 37.92 3.72
645 679 3.557577 TCAAATCACGCCTTGAATGTG 57.442 42.857 0.00 0.00 37.92 3.21
646 680 3.569701 AGTTCAAATCACGCCTTGAATGT 59.430 39.130 1.02 0.00 42.01 2.71
647 681 4.164822 AGTTCAAATCACGCCTTGAATG 57.835 40.909 1.02 0.00 42.01 2.67
648 682 4.549458 CAAGTTCAAATCACGCCTTGAAT 58.451 39.130 1.02 0.00 42.01 2.57
649 683 3.243367 CCAAGTTCAAATCACGCCTTGAA 60.243 43.478 0.00 0.00 37.92 2.69
650 684 2.293122 CCAAGTTCAAATCACGCCTTGA 59.707 45.455 0.00 0.00 39.11 3.02
651 685 2.607771 CCCAAGTTCAAATCACGCCTTG 60.608 50.000 0.00 0.00 0.00 3.61
652 686 1.613437 CCCAAGTTCAAATCACGCCTT 59.387 47.619 0.00 0.00 0.00 4.35
653 687 1.247567 CCCAAGTTCAAATCACGCCT 58.752 50.000 0.00 0.00 0.00 5.52
654 688 0.958822 ACCCAAGTTCAAATCACGCC 59.041 50.000 0.00 0.00 0.00 5.68
655 689 1.606668 TCACCCAAGTTCAAATCACGC 59.393 47.619 0.00 0.00 0.00 5.34
656 690 3.138304 TCTCACCCAAGTTCAAATCACG 58.862 45.455 0.00 0.00 0.00 4.35
657 691 4.082571 CCATCTCACCCAAGTTCAAATCAC 60.083 45.833 0.00 0.00 0.00 3.06
658 692 4.081406 CCATCTCACCCAAGTTCAAATCA 58.919 43.478 0.00 0.00 0.00 2.57
659 693 3.119352 GCCATCTCACCCAAGTTCAAATC 60.119 47.826 0.00 0.00 0.00 2.17
660 694 2.827921 GCCATCTCACCCAAGTTCAAAT 59.172 45.455 0.00 0.00 0.00 2.32
661 695 2.238521 GCCATCTCACCCAAGTTCAAA 58.761 47.619 0.00 0.00 0.00 2.69
662 696 1.144708 TGCCATCTCACCCAAGTTCAA 59.855 47.619 0.00 0.00 0.00 2.69
663 697 0.770499 TGCCATCTCACCCAAGTTCA 59.230 50.000 0.00 0.00 0.00 3.18
664 698 1.457346 CTGCCATCTCACCCAAGTTC 58.543 55.000 0.00 0.00 0.00 3.01
665 699 0.610232 GCTGCCATCTCACCCAAGTT 60.610 55.000 0.00 0.00 0.00 2.66
666 700 1.001641 GCTGCCATCTCACCCAAGT 60.002 57.895 0.00 0.00 0.00 3.16
667 701 0.609957 TTGCTGCCATCTCACCCAAG 60.610 55.000 0.00 0.00 0.00 3.61
668 702 0.895100 GTTGCTGCCATCTCACCCAA 60.895 55.000 0.00 0.00 0.00 4.12
669 703 1.303561 GTTGCTGCCATCTCACCCA 60.304 57.895 0.00 0.00 0.00 4.51
670 704 2.048603 GGTTGCTGCCATCTCACCC 61.049 63.158 0.00 0.00 0.00 4.61
671 705 1.001641 AGGTTGCTGCCATCTCACC 60.002 57.895 0.00 0.00 0.00 4.02
672 706 0.321919 TGAGGTTGCTGCCATCTCAC 60.322 55.000 12.21 0.00 31.29 3.51
673 707 0.035725 CTGAGGTTGCTGCCATCTCA 60.036 55.000 15.01 15.01 33.55 3.27
674 708 1.375098 GCTGAGGTTGCTGCCATCTC 61.375 60.000 7.03 7.03 0.00 2.75
675 709 1.378250 GCTGAGGTTGCTGCCATCT 60.378 57.895 0.00 0.00 0.00 2.90
676 710 0.107508 TAGCTGAGGTTGCTGCCATC 60.108 55.000 0.00 0.00 41.32 3.51
677 711 0.393537 GTAGCTGAGGTTGCTGCCAT 60.394 55.000 0.00 0.00 41.32 4.40
678 712 1.003355 GTAGCTGAGGTTGCTGCCA 60.003 57.895 0.00 0.00 41.32 4.92
679 713 3.896479 GTAGCTGAGGTTGCTGCC 58.104 61.111 0.00 0.00 41.32 4.85
680 714 2.103042 CGGTAGCTGAGGTTGCTGC 61.103 63.158 0.00 0.00 41.32 5.25
681 715 0.459237 CTCGGTAGCTGAGGTTGCTG 60.459 60.000 0.00 0.00 41.32 4.41
682 716 0.900647 ACTCGGTAGCTGAGGTTGCT 60.901 55.000 14.95 0.00 40.86 3.91
683 717 0.037232 AACTCGGTAGCTGAGGTTGC 60.037 55.000 14.95 0.00 40.86 4.17
684 718 2.731341 CGTAACTCGGTAGCTGAGGTTG 60.731 54.545 14.95 4.85 40.86 3.77
685 719 1.471684 CGTAACTCGGTAGCTGAGGTT 59.528 52.381 14.95 10.38 40.86 3.50
686 720 1.093159 CGTAACTCGGTAGCTGAGGT 58.907 55.000 14.95 12.04 40.86 3.85
687 721 3.920144 CGTAACTCGGTAGCTGAGG 57.080 57.895 14.95 0.00 40.86 3.86
697 731 2.505557 GCGTGGACCCGTAACTCG 60.506 66.667 4.61 0.00 39.52 4.18
698 732 2.125793 GGCGTGGACCCGTAACTC 60.126 66.667 4.61 0.00 0.00 3.01
699 733 3.698820 GGGCGTGGACCCGTAACT 61.699 66.667 4.61 0.00 40.98 2.24
709 743 3.546714 AAAAGAGGACGGGGCGTGG 62.547 63.158 0.00 0.00 41.37 4.94
710 744 1.599797 AAAAAGAGGACGGGGCGTG 60.600 57.895 0.00 0.00 41.37 5.34
711 745 1.599797 CAAAAAGAGGACGGGGCGT 60.600 57.895 0.00 0.00 45.10 5.68
712 746 2.332654 CCAAAAAGAGGACGGGGCG 61.333 63.158 0.00 0.00 0.00 6.13
713 747 1.228459 ACCAAAAAGAGGACGGGGC 60.228 57.895 0.00 0.00 0.00 5.80
714 748 1.524008 GCACCAAAAAGAGGACGGGG 61.524 60.000 0.00 0.00 0.00 5.73
715 749 0.821711 TGCACCAAAAAGAGGACGGG 60.822 55.000 0.00 0.00 0.00 5.28
716 750 1.068333 CATGCACCAAAAAGAGGACGG 60.068 52.381 0.00 0.00 0.00 4.79
717 751 1.666888 GCATGCACCAAAAAGAGGACG 60.667 52.381 14.21 0.00 0.00 4.79
718 752 1.340889 TGCATGCACCAAAAAGAGGAC 59.659 47.619 18.46 0.00 0.00 3.85
719 753 1.702182 TGCATGCACCAAAAAGAGGA 58.298 45.000 18.46 0.00 0.00 3.71
720 754 2.754946 ATGCATGCACCAAAAAGAGG 57.245 45.000 25.37 0.00 0.00 3.69
721 755 4.177165 TGTATGCATGCACCAAAAAGAG 57.823 40.909 25.37 0.00 0.00 2.85
722 756 4.496360 CATGTATGCATGCACCAAAAAGA 58.504 39.130 25.37 3.48 44.87 2.52
723 757 4.850859 CATGTATGCATGCACCAAAAAG 57.149 40.909 25.37 10.42 44.87 2.27
850 884 0.390472 GAAGACAGGTGAAGGGAGCG 60.390 60.000 0.00 0.00 0.00 5.03
865 899 7.337938 TGGATTATCTTGCAGTTGTATGAAGA 58.662 34.615 0.00 0.00 0.00 2.87
897 931 3.379372 GGGATAACAGCGTAGTGTCACTA 59.621 47.826 8.70 8.70 0.00 2.74
923 957 2.036256 GATGCTGCCACCTTGGGT 59.964 61.111 0.00 0.00 38.19 4.51
991 1026 4.560716 CGACAAGAACTCCATTACTGTGGA 60.561 45.833 0.00 0.00 45.78 4.02
1086 1121 2.813042 GACTGCCAGAGCGAGTGC 60.813 66.667 0.00 0.00 44.31 4.40
1305 1340 4.338539 GACAGCGACACGGACGGT 62.339 66.667 0.00 0.00 42.02 4.83
1863 1898 1.476488 TCCTCGATGACAATGAGCGAA 59.524 47.619 0.00 0.00 0.00 4.70
1931 1966 2.343758 GTCTCTTGTGCCGCCTCA 59.656 61.111 0.00 0.00 0.00 3.86
2103 2138 2.668212 ATGCCGTCCACGTGGTTG 60.668 61.111 32.74 24.60 37.74 3.77
2295 2330 3.241530 AGCACTTCGCCCACCTCA 61.242 61.111 0.00 0.00 44.04 3.86
2361 2396 3.334054 ACCCTGGCCTTCAGCTCC 61.334 66.667 3.32 0.00 42.05 4.70
2476 2511 0.622665 CCCAAGATCCTGACCTTGCT 59.377 55.000 0.00 0.00 38.65 3.91
2582 2617 2.254546 TTGAAGATGCGCCCGATATT 57.745 45.000 4.18 0.00 0.00 1.28
2584 2619 1.134521 ACTTTGAAGATGCGCCCGATA 60.135 47.619 4.18 0.00 0.00 2.92
2587 2622 0.240945 AAACTTTGAAGATGCGCCCG 59.759 50.000 4.18 0.00 0.00 6.13
2589 2624 4.485163 ACATTAAACTTTGAAGATGCGCC 58.515 39.130 4.18 0.00 0.00 6.53
2614 2650 4.280929 AGCTTACAAGAAACCATCAAACCC 59.719 41.667 0.00 0.00 0.00 4.11
2664 2700 1.139058 AGGTTCGAATATTGCTCGGCT 59.861 47.619 0.00 0.00 36.93 5.52
2723 2759 3.002277 GGCAAGTATAAGCCGTCCC 57.998 57.895 0.00 0.00 41.70 4.46
2750 2794 1.768077 GTGGGATGGGAGGAGAGGG 60.768 68.421 0.00 0.00 0.00 4.30
2755 2809 1.502039 AGTATACGTGGGATGGGAGGA 59.498 52.381 0.00 0.00 0.00 3.71
2808 2862 2.415608 CCAGCTCCCGTAAGCGAGA 61.416 63.158 0.00 0.00 45.01 4.04
2908 2962 8.918961 ATATTTCGACGAAGATCCATAGAATC 57.081 34.615 10.61 0.00 0.00 2.52
3117 3171 1.595382 GCGCATATTGCCTCGACCT 60.595 57.895 0.30 0.00 41.12 3.85
3155 3209 3.343421 GCCCTTTGCGTCGTCGTT 61.343 61.111 3.66 0.00 39.49 3.85
3182 3239 1.450491 GCCGCCTTCTCCCTTTCTC 60.450 63.158 0.00 0.00 0.00 2.87
3370 3427 2.271497 CAGGCCTCCTTGAGCAGG 59.729 66.667 0.00 0.00 45.64 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.