Multiple sequence alignment - TraesCS5B01G229000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G229000 chr5B 100.000 3509 0 0 1 3509 405766731 405770239 0.000000e+00 6481.0
1 TraesCS5B01G229000 chr5B 100.000 605 0 0 3815 4419 405770545 405771149 0.000000e+00 1118.0
2 TraesCS5B01G229000 chr5B 88.684 380 26 6 3 380 335547612 335547976 8.720000e-122 448.0
3 TraesCS5B01G229000 chr5B 87.927 381 28 7 3 380 335549808 335550173 2.440000e-117 433.0
4 TraesCS5B01G229000 chr5B 85.934 391 20 13 3 383 555172754 555172389 6.930000e-103 385.0
5 TraesCS5B01G229000 chr5D 92.037 3177 140 49 387 3507 345849357 345846238 0.000000e+00 4361.0
6 TraesCS5B01G229000 chr5D 95.677 347 13 2 3815 4159 345845876 345845530 1.390000e-154 556.0
7 TraesCS5B01G229000 chr5D 97.122 139 4 0 4281 4419 345686647 345686509 7.390000e-58 235.0
8 TraesCS5B01G229000 chr5D 94.574 129 6 1 4156 4283 345844157 345844029 9.690000e-47 198.0
9 TraesCS5B01G229000 chr5A 90.870 1851 97 26 380 2179 445391235 445393064 0.000000e+00 2416.0
10 TraesCS5B01G229000 chr5A 94.495 1326 59 10 2190 3507 445393225 445394544 0.000000e+00 2032.0
11 TraesCS5B01G229000 chr5A 84.840 343 18 9 3815 4156 445394593 445394902 9.230000e-82 315.0
12 TraesCS5B01G229000 chr5A 92.237 219 15 2 4203 4419 445417058 445417276 4.290000e-80 309.0
13 TraesCS5B01G229000 chr5A 100.000 52 0 0 4156 4207 445395851 445395902 3.640000e-16 97.1
14 TraesCS5B01G229000 chr4B 88.918 379 37 3 3 380 18142428 18142054 3.110000e-126 462.0
15 TraesCS5B01G229000 chr4B 85.379 383 40 9 3 382 559292821 559293190 2.490000e-102 383.0
16 TraesCS5B01G229000 chr4B 86.806 144 19 0 1335 1478 458459438 458459295 1.270000e-35 161.0
17 TraesCS5B01G229000 chr6B 87.724 391 36 6 3 382 385611716 385611327 3.140000e-121 446.0
18 TraesCS5B01G229000 chr4D 87.273 385 36 9 3 382 16825661 16825285 1.140000e-115 427.0
19 TraesCS5B01G229000 chr4D 86.806 144 19 0 1335 1478 373209815 373209672 1.270000e-35 161.0
20 TraesCS5B01G229000 chr6A 86.162 383 41 6 3 380 446897452 446897827 1.910000e-108 403.0
21 TraesCS5B01G229000 chr6A 81.959 388 51 16 3 380 574382345 574382723 1.190000e-80 311.0
22 TraesCS5B01G229000 chr2D 85.302 381 44 10 3 380 48009348 48009719 2.490000e-102 383.0
23 TraesCS5B01G229000 chr7B 84.737 380 47 8 4 380 581249904 581250275 1.940000e-98 370.0
24 TraesCS5B01G229000 chr4A 88.194 144 17 0 1335 1478 91470407 91470550 5.880000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G229000 chr5B 405766731 405771149 4418 False 3799.500 6481 100.00000 1 4419 2 chr5B.!!$F2 4418
1 TraesCS5B01G229000 chr5B 335547612 335550173 2561 False 440.500 448 88.30550 3 380 2 chr5B.!!$F1 377
2 TraesCS5B01G229000 chr5D 345844029 345849357 5328 True 1705.000 4361 94.09600 387 4283 3 chr5D.!!$R2 3896
3 TraesCS5B01G229000 chr5A 445391235 445395902 4667 False 1215.025 2416 92.55125 380 4207 4 chr5A.!!$F2 3827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 619 0.601558 TCACGAGCACTCCCACTTAC 59.398 55.0 0.00 0.0 0.00 2.34 F
609 620 0.603569 CACGAGCACTCCCACTTACT 59.396 55.0 0.00 0.0 0.00 2.24 F
1779 2248 0.874390 GGCAAAGACGTGCAAGATCA 59.126 50.0 6.65 0.0 46.81 2.92 F
2529 3169 0.321210 CACCTACACCCATGCGTTCA 60.321 55.0 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1759 2228 0.179215 GATCTTGCACGTCTTTGCCG 60.179 55.0 0.00 0.0 42.25 5.69 R
1793 2262 0.445436 CAAGATCCGTGCTGCAACTC 59.555 55.0 2.77 0.0 0.00 3.01 R
2664 3306 0.803117 CTCGTAGAACGGAGCACAGA 59.197 55.0 0.00 0.0 42.81 3.41 R
4399 7148 0.179073 CGCCTCCAATGTCCGATTCT 60.179 55.0 0.00 0.0 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.998258 GACACACTCATTTGGATTTTCAAG 57.002 37.500 0.00 0.00 0.00 3.02
41 42 1.800805 AGATGACTTGGTTGAGCACG 58.199 50.000 0.00 0.00 0.00 5.34
61 62 2.886523 CGTGTGGGATCATATTGGCAAT 59.113 45.455 18.01 18.01 0.00 3.56
151 152 9.819267 TTTTATTAAAAACAAGTTCGATTGGGT 57.181 25.926 3.94 0.00 34.36 4.51
152 153 9.819267 TTTATTAAAAACAAGTTCGATTGGGTT 57.181 25.926 3.94 0.00 34.36 4.11
153 154 7.707774 ATTAAAAACAAGTTCGATTGGGTTG 57.292 32.000 3.94 0.00 34.36 3.77
154 155 4.729227 AAAACAAGTTCGATTGGGTTGT 57.271 36.364 3.94 0.00 34.36 3.32
155 156 5.838531 AAAACAAGTTCGATTGGGTTGTA 57.161 34.783 3.94 0.00 34.36 2.41
156 157 5.838531 AAACAAGTTCGATTGGGTTGTAA 57.161 34.783 3.94 0.00 34.36 2.41
157 158 5.838531 AACAAGTTCGATTGGGTTGTAAA 57.161 34.783 3.94 0.00 34.36 2.01
158 159 5.838531 ACAAGTTCGATTGGGTTGTAAAA 57.161 34.783 3.94 0.00 34.36 1.52
225 226 7.673641 TGTTTTGATATGAAAATATGGGCCT 57.326 32.000 4.53 0.00 0.00 5.19
226 227 7.499292 TGTTTTGATATGAAAATATGGGCCTG 58.501 34.615 4.53 0.00 0.00 4.85
227 228 5.726980 TTGATATGAAAATATGGGCCTGC 57.273 39.130 4.53 0.00 0.00 4.85
251 254 0.680921 CGGGATGGGCAAACTGATGT 60.681 55.000 0.00 0.00 0.00 3.06
296 299 3.016971 CATCCCAGGACAGGCCCA 61.017 66.667 0.00 0.00 37.37 5.36
301 304 2.348998 CAGGACAGGCCCAGACAC 59.651 66.667 0.00 0.00 37.37 3.67
304 307 2.660064 GGACAGGCCCAGACACGAT 61.660 63.158 0.00 0.00 0.00 3.73
324 327 1.817941 CCATCGCCCTACCCAAACG 60.818 63.158 0.00 0.00 0.00 3.60
328 331 2.951101 CGCCCTACCCAAACGGACT 61.951 63.158 0.00 0.00 34.64 3.85
329 332 1.376812 GCCCTACCCAAACGGACTG 60.377 63.158 0.00 0.00 34.64 3.51
351 354 2.968156 CGGGCAAAACGGACGTCA 60.968 61.111 18.91 0.00 0.00 4.35
385 388 1.202651 CGGTGGAGTTGGCCTAATAGG 60.203 57.143 3.32 0.99 38.80 2.57
432 439 7.435488 CCGTGGAAACTATTAGTACAGATGAAG 59.565 40.741 0.00 0.00 0.00 3.02
507 514 2.942376 CAAAGTGTATCATAAGCCCGCA 59.058 45.455 0.00 0.00 0.00 5.69
606 617 1.115930 ACTCACGAGCACTCCCACTT 61.116 55.000 0.00 0.00 0.00 3.16
608 619 0.601558 TCACGAGCACTCCCACTTAC 59.398 55.000 0.00 0.00 0.00 2.34
609 620 0.603569 CACGAGCACTCCCACTTACT 59.396 55.000 0.00 0.00 0.00 2.24
610 621 1.816835 CACGAGCACTCCCACTTACTA 59.183 52.381 0.00 0.00 0.00 1.82
611 622 2.093106 ACGAGCACTCCCACTTACTAG 58.907 52.381 0.00 0.00 0.00 2.57
703 715 1.372251 CACGAAGCAGACACGAGCT 60.372 57.895 0.00 0.00 44.31 4.09
757 774 4.864334 CCCACATGCCGCTCCCTC 62.864 72.222 0.00 0.00 0.00 4.30
758 775 4.864334 CCACATGCCGCTCCCTCC 62.864 72.222 0.00 0.00 0.00 4.30
792 809 2.125912 CGTACAGGCTCGCTTGCT 60.126 61.111 0.57 0.00 0.00 3.91
984 1217 3.498071 CCACCACCACCACCACCT 61.498 66.667 0.00 0.00 0.00 4.00
1012 1245 4.020617 CCTCCACGAAGCCAGCCA 62.021 66.667 0.00 0.00 0.00 4.75
1013 1246 2.032528 CTCCACGAAGCCAGCCAA 59.967 61.111 0.00 0.00 0.00 4.52
1015 1248 3.741476 CCACGAAGCCAGCCAAGC 61.741 66.667 0.00 0.00 0.00 4.01
1685 2154 1.814793 TGCTGCCGCAAATTACTACA 58.185 45.000 0.00 0.00 44.62 2.74
1686 2155 1.737236 TGCTGCCGCAAATTACTACAG 59.263 47.619 0.00 0.00 44.62 2.74
1779 2248 0.874390 GGCAAAGACGTGCAAGATCA 59.126 50.000 6.65 0.00 46.81 2.92
1815 2284 3.869272 GCAGCACGGATCTTGCGG 61.869 66.667 13.05 13.05 45.15 5.69
1821 2290 0.670546 CACGGATCTTGCGGTCTTGT 60.671 55.000 0.00 0.00 34.75 3.16
1831 2300 0.737715 GCGGTCTTGTCTACAGGCTG 60.738 60.000 14.16 14.16 0.00 4.85
1845 2323 2.567169 ACAGGCTGCTACTGTGATAACA 59.433 45.455 15.89 0.00 46.67 2.41
1863 2341 8.066000 GTGATAACAGTAGTACCAAAACACAAC 58.934 37.037 0.00 0.00 0.00 3.32
1899 2377 0.605319 CTTGTAAACCGGCAGCTGGA 60.605 55.000 28.29 0.79 33.36 3.86
1936 2415 3.182572 GCTAGGTCTTTCACGAATATGCG 59.817 47.826 0.14 0.14 37.29 4.73
2016 2495 6.205101 AGCTTGCTAGGAAGATTTTCATTG 57.795 37.500 26.36 0.00 34.90 2.82
2057 2538 6.431852 ACGCATACTAACCTGTGGTAAAAATT 59.568 34.615 0.00 0.00 33.12 1.82
2060 2541 7.906527 GCATACTAACCTGTGGTAAAAATTACG 59.093 37.037 0.00 0.00 33.12 3.18
2062 2543 7.425577 ACTAACCTGTGGTAAAAATTACGAC 57.574 36.000 8.03 8.03 33.12 4.34
2063 2544 6.991531 ACTAACCTGTGGTAAAAATTACGACA 59.008 34.615 14.51 14.51 33.12 4.35
2064 2545 5.934935 ACCTGTGGTAAAAATTACGACAG 57.065 39.130 25.66 25.66 46.68 3.51
2236 2872 5.026121 TCTGGAGTTTCTGGAGTGATACAT 58.974 41.667 0.00 0.00 0.00 2.29
2240 2876 5.128827 GGAGTTTCTGGAGTGATACATGGTA 59.871 44.000 0.00 0.00 0.00 3.25
2273 2911 8.934023 ATACAGTTAGGAAGGAAAATTTGTCA 57.066 30.769 0.00 0.00 0.00 3.58
2274 2912 7.839680 ACAGTTAGGAAGGAAAATTTGTCAT 57.160 32.000 0.00 0.00 0.00 3.06
2276 2914 9.362151 ACAGTTAGGAAGGAAAATTTGTCATTA 57.638 29.630 0.00 0.00 0.00 1.90
2283 2921 9.419297 GGAAGGAAAATTTGTCATTAACTAACC 57.581 33.333 0.00 0.00 0.00 2.85
2284 2922 9.974980 GAAGGAAAATTTGTCATTAACTAACCA 57.025 29.630 0.00 0.00 0.00 3.67
2423 3061 1.208614 GAAACCGCTGCTTCTGCTG 59.791 57.895 0.00 0.00 40.48 4.41
2477 3117 5.746245 GTGAGAGAGACAATAATGAACTCCG 59.254 44.000 0.00 0.00 35.68 4.63
2526 3166 2.046314 GCACCTACACCCATGCGT 60.046 61.111 0.00 0.00 0.00 5.24
2527 3167 1.674322 GCACCTACACCCATGCGTT 60.674 57.895 0.00 0.00 0.00 4.84
2529 3169 0.321210 CACCTACACCCATGCGTTCA 60.321 55.000 0.00 0.00 0.00 3.18
2606 3248 1.487482 GCGTTTCTTGCCACCTTTTC 58.513 50.000 0.00 0.00 0.00 2.29
2664 3306 3.552273 CGACCAATTATAGCTAGCGTGGT 60.552 47.826 19.25 19.25 40.53 4.16
2666 3308 3.641906 ACCAATTATAGCTAGCGTGGTCT 59.358 43.478 9.55 0.00 32.46 3.85
2741 3383 2.180204 GGTTGTGTGCGTGCAGACT 61.180 57.895 20.71 0.00 40.35 3.24
2822 3464 1.301244 GGCGATGACGATGATGGCT 60.301 57.895 0.00 0.00 42.66 4.75
2825 3467 1.858041 GATGACGATGATGGCTGCG 59.142 57.895 0.00 0.00 0.00 5.18
2850 3492 2.577059 GGGGCGACGAAGATGACA 59.423 61.111 0.00 0.00 0.00 3.58
2903 3545 2.405594 GACGAGCTGAGCGTCGAT 59.594 61.111 25.07 13.73 46.85 3.59
3039 3681 3.771160 GGGCGGAGATCACCACGT 61.771 66.667 9.99 0.00 0.00 4.49
3077 3719 2.512515 GTGCTCCTCATCACGGCC 60.513 66.667 0.00 0.00 0.00 6.13
3132 3774 2.181777 GCATCGACGAGGAGTGCA 59.818 61.111 14.58 0.00 35.93 4.57
3922 5254 1.200948 GTTTGCATCTGGAGTTGGAGC 59.799 52.381 0.00 0.00 0.00 4.70
4086 5418 8.896320 TTTGAACTACTGTGTGCTATTTAAGA 57.104 30.769 0.00 0.00 0.00 2.10
4087 5419 7.884816 TGAACTACTGTGTGCTATTTAAGAC 57.115 36.000 0.00 0.00 0.00 3.01
4088 5420 7.667557 TGAACTACTGTGTGCTATTTAAGACT 58.332 34.615 0.00 0.00 0.00 3.24
4089 5421 7.813148 TGAACTACTGTGTGCTATTTAAGACTC 59.187 37.037 0.00 0.00 0.00 3.36
4104 5440 2.448453 AGACTCGTGGAGTTTCTAGGG 58.552 52.381 0.00 0.00 43.53 3.53
4105 5441 2.169330 GACTCGTGGAGTTTCTAGGGT 58.831 52.381 0.00 0.00 43.53 4.34
4109 5445 1.621814 CGTGGAGTTTCTAGGGTTCCA 59.378 52.381 0.00 0.00 35.67 3.53
4146 5483 2.857748 GTTAAGGCTGTTGTGTTTGTGC 59.142 45.455 0.00 0.00 0.00 4.57
4230 6978 4.505566 GCCTCCATAAGACATTGCATCCTA 60.506 45.833 0.00 0.00 0.00 2.94
4232 6980 5.471456 CCTCCATAAGACATTGCATCCTAAC 59.529 44.000 0.00 0.00 0.00 2.34
4255 7003 8.515473 AACCGTTTTTATCATGTTTAGCTTTC 57.485 30.769 0.00 0.00 0.00 2.62
4283 7032 6.650427 ATCATGCAATTTGATACTCATGCT 57.350 33.333 0.00 0.00 32.71 3.79
4284 7033 6.459670 TCATGCAATTTGATACTCATGCTT 57.540 33.333 0.00 0.00 32.71 3.91
4285 7034 6.270064 TCATGCAATTTGATACTCATGCTTG 58.730 36.000 0.00 0.00 36.87 4.01
4286 7035 5.900865 TGCAATTTGATACTCATGCTTGA 57.099 34.783 0.00 1.92 32.71 3.02
4287 7036 6.270156 TGCAATTTGATACTCATGCTTGAA 57.730 33.333 3.65 0.00 32.71 2.69
4288 7037 6.869695 TGCAATTTGATACTCATGCTTGAAT 58.130 32.000 3.65 0.00 32.71 2.57
4290 7039 8.468399 TGCAATTTGATACTCATGCTTGAATAA 58.532 29.630 3.65 0.00 32.71 1.40
4291 7040 9.472361 GCAATTTGATACTCATGCTTGAATAAT 57.528 29.630 3.65 0.00 29.83 1.28
4301 7050 9.624373 ACTCATGCTTGAATAATAATCTCAACT 57.376 29.630 3.65 0.00 0.00 3.16
4309 7058 9.466497 TTGAATAATAATCTCAACTTCAAGGCT 57.534 29.630 0.00 0.00 30.25 4.58
4310 7059 9.466497 TGAATAATAATCTCAACTTCAAGGCTT 57.534 29.630 0.00 0.00 0.00 4.35
4311 7060 9.943163 GAATAATAATCTCAACTTCAAGGCTTC 57.057 33.333 0.00 0.00 0.00 3.86
4312 7061 6.765915 AATAATCTCAACTTCAAGGCTTCC 57.234 37.500 0.00 0.00 0.00 3.46
4313 7062 3.795688 ATCTCAACTTCAAGGCTTCCA 57.204 42.857 0.00 0.00 0.00 3.53
4314 7063 3.795688 TCTCAACTTCAAGGCTTCCAT 57.204 42.857 0.00 0.00 0.00 3.41
4316 7065 3.072915 TCTCAACTTCAAGGCTTCCATGA 59.927 43.478 0.00 0.00 28.83 3.07
4317 7066 3.415212 TCAACTTCAAGGCTTCCATGAG 58.585 45.455 0.00 0.00 32.72 2.90
4319 7068 1.988107 ACTTCAAGGCTTCCATGAGGA 59.012 47.619 0.00 0.00 43.93 3.71
4320 7069 2.026449 ACTTCAAGGCTTCCATGAGGAG 60.026 50.000 0.00 0.00 46.74 3.69
4321 7070 0.914644 TCAAGGCTTCCATGAGGAGG 59.085 55.000 0.00 0.00 46.74 4.30
4322 7071 0.914644 CAAGGCTTCCATGAGGAGGA 59.085 55.000 0.00 0.00 46.74 3.71
4323 7072 1.283029 CAAGGCTTCCATGAGGAGGAA 59.717 52.381 0.00 0.00 46.74 3.36
4324 7073 1.673767 AGGCTTCCATGAGGAGGAAA 58.326 50.000 0.00 0.00 46.74 3.13
4325 7074 1.995542 AGGCTTCCATGAGGAGGAAAA 59.004 47.619 0.00 0.00 46.74 2.29
4326 7075 2.025510 AGGCTTCCATGAGGAGGAAAAG 60.026 50.000 0.00 0.00 46.74 2.27
4327 7076 2.025887 GGCTTCCATGAGGAGGAAAAGA 60.026 50.000 0.00 0.00 46.74 2.52
4328 7077 3.372458 GGCTTCCATGAGGAGGAAAAGAT 60.372 47.826 0.00 0.00 46.74 2.40
4329 7078 4.276642 GCTTCCATGAGGAGGAAAAGATT 58.723 43.478 0.00 0.00 46.74 2.40
4330 7079 4.097589 GCTTCCATGAGGAGGAAAAGATTG 59.902 45.833 0.00 0.00 46.74 2.67
4331 7080 5.503927 CTTCCATGAGGAGGAAAAGATTGA 58.496 41.667 0.00 0.00 46.74 2.57
4332 7081 5.722172 TCCATGAGGAGGAAAAGATTGAT 57.278 39.130 0.00 0.00 39.61 2.57
4333 7082 6.829985 TCCATGAGGAGGAAAAGATTGATA 57.170 37.500 0.00 0.00 39.61 2.15
4334 7083 7.398289 TCCATGAGGAGGAAAAGATTGATAT 57.602 36.000 0.00 0.00 39.61 1.63
4335 7084 7.456725 TCCATGAGGAGGAAAAGATTGATATC 58.543 38.462 0.00 0.00 39.61 1.63
4336 7085 6.658391 CCATGAGGAGGAAAAGATTGATATCC 59.342 42.308 0.00 0.00 36.89 2.59
4337 7086 7.460071 CATGAGGAGGAAAAGATTGATATCCT 58.540 38.462 0.00 0.00 43.07 3.24
4338 7087 8.600668 CATGAGGAGGAAAAGATTGATATCCTA 58.399 37.037 0.00 0.00 40.53 2.94
4339 7088 8.748179 TGAGGAGGAAAAGATTGATATCCTAT 57.252 34.615 0.00 0.00 40.53 2.57
4340 7089 8.600668 TGAGGAGGAAAAGATTGATATCCTATG 58.399 37.037 0.00 0.00 40.53 2.23
4341 7090 8.748179 AGGAGGAAAAGATTGATATCCTATGA 57.252 34.615 0.00 0.00 40.53 2.15
4342 7091 9.349041 AGGAGGAAAAGATTGATATCCTATGAT 57.651 33.333 0.00 0.00 40.53 2.45
4343 7092 9.393512 GGAGGAAAAGATTGATATCCTATGATG 57.606 37.037 0.00 0.00 40.53 3.07
4346 7095 9.956640 GGAAAAGATTGATATCCTATGATGAGT 57.043 33.333 0.00 0.00 32.18 3.41
4349 7098 9.650539 AAAGATTGATATCCTATGATGAGTTCG 57.349 33.333 0.00 0.00 32.18 3.95
4350 7099 7.264221 AGATTGATATCCTATGATGAGTTCGC 58.736 38.462 0.00 0.00 32.18 4.70
4351 7100 5.330455 TGATATCCTATGATGAGTTCGCC 57.670 43.478 0.00 0.00 32.18 5.54
4352 7101 4.772100 TGATATCCTATGATGAGTTCGCCA 59.228 41.667 0.00 0.00 32.18 5.69
4353 7102 5.423290 TGATATCCTATGATGAGTTCGCCAT 59.577 40.000 0.00 0.00 32.18 4.40
4354 7103 4.630644 ATCCTATGATGAGTTCGCCATT 57.369 40.909 0.00 0.00 0.00 3.16
4355 7104 4.422073 TCCTATGATGAGTTCGCCATTT 57.578 40.909 0.00 0.00 0.00 2.32
4356 7105 5.545063 TCCTATGATGAGTTCGCCATTTA 57.455 39.130 0.00 0.00 0.00 1.40
4357 7106 5.297547 TCCTATGATGAGTTCGCCATTTAC 58.702 41.667 0.00 0.00 0.00 2.01
4358 7107 4.150627 CCTATGATGAGTTCGCCATTTACG 59.849 45.833 0.00 0.00 0.00 3.18
4359 7108 3.239587 TGATGAGTTCGCCATTTACGA 57.760 42.857 0.00 0.00 37.86 3.43
4360 7109 3.792401 TGATGAGTTCGCCATTTACGAT 58.208 40.909 0.00 0.00 39.65 3.73
4361 7110 3.555547 TGATGAGTTCGCCATTTACGATG 59.444 43.478 0.00 0.00 39.65 3.84
4362 7111 2.967362 TGAGTTCGCCATTTACGATGT 58.033 42.857 0.00 0.00 39.65 3.06
4363 7112 3.331150 TGAGTTCGCCATTTACGATGTT 58.669 40.909 0.00 0.00 39.65 2.71
4364 7113 3.749088 TGAGTTCGCCATTTACGATGTTT 59.251 39.130 0.00 0.00 39.65 2.83
4365 7114 4.142988 TGAGTTCGCCATTTACGATGTTTC 60.143 41.667 0.00 0.00 39.65 2.78
4366 7115 4.000988 AGTTCGCCATTTACGATGTTTCT 58.999 39.130 0.00 0.00 39.65 2.52
4367 7116 4.092968 AGTTCGCCATTTACGATGTTTCTC 59.907 41.667 0.00 0.00 39.65 2.87
4368 7117 3.857052 TCGCCATTTACGATGTTTCTCT 58.143 40.909 0.00 0.00 33.96 3.10
4369 7118 4.250464 TCGCCATTTACGATGTTTCTCTT 58.750 39.130 0.00 0.00 33.96 2.85
4370 7119 4.693566 TCGCCATTTACGATGTTTCTCTTT 59.306 37.500 0.00 0.00 33.96 2.52
4371 7120 5.870433 TCGCCATTTACGATGTTTCTCTTTA 59.130 36.000 0.00 0.00 33.96 1.85
4372 7121 6.537301 TCGCCATTTACGATGTTTCTCTTTAT 59.463 34.615 0.00 0.00 33.96 1.40
4373 7122 7.065324 TCGCCATTTACGATGTTTCTCTTTATT 59.935 33.333 0.00 0.00 33.96 1.40
4374 7123 8.332464 CGCCATTTACGATGTTTCTCTTTATTA 58.668 33.333 0.00 0.00 0.00 0.98
4375 7124 9.434559 GCCATTTACGATGTTTCTCTTTATTAC 57.565 33.333 0.00 0.00 0.00 1.89
4382 7131 9.436957 ACGATGTTTCTCTTTATTACATCTTGT 57.563 29.630 0.00 0.00 41.67 3.16
4383 7132 9.694520 CGATGTTTCTCTTTATTACATCTTGTG 57.305 33.333 0.00 0.00 41.67 3.33
4408 7157 9.692749 TGATTATTCACTAATACAGAATCGGAC 57.307 33.333 0.00 0.00 34.19 4.79
4409 7158 9.692749 GATTATTCACTAATACAGAATCGGACA 57.307 33.333 0.00 0.00 34.19 4.02
4412 7161 7.770801 TTCACTAATACAGAATCGGACATTG 57.229 36.000 0.00 0.00 0.00 2.82
4413 7162 6.280643 TCACTAATACAGAATCGGACATTGG 58.719 40.000 0.00 0.00 0.00 3.16
4414 7163 6.097696 TCACTAATACAGAATCGGACATTGGA 59.902 38.462 0.00 0.00 0.00 3.53
4415 7164 6.422100 CACTAATACAGAATCGGACATTGGAG 59.578 42.308 0.00 0.00 0.00 3.86
4416 7165 2.698855 ACAGAATCGGACATTGGAGG 57.301 50.000 0.00 0.00 0.00 4.30
4417 7166 1.303309 CAGAATCGGACATTGGAGGC 58.697 55.000 0.00 0.00 0.00 4.70
4418 7167 0.179073 AGAATCGGACATTGGAGGCG 60.179 55.000 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.738114 TCTTGAAAATCCAAATGAGTGTGTC 58.262 36.000 0.00 0.00 0.00 3.67
1 2 6.713762 TCTTGAAAATCCAAATGAGTGTGT 57.286 33.333 0.00 0.00 0.00 3.72
23 24 1.195448 CACGTGCTCAACCAAGTCATC 59.805 52.381 0.82 0.00 0.00 2.92
41 42 3.890756 TGATTGCCAATATGATCCCACAC 59.109 43.478 0.00 0.00 0.00 3.82
74 75 9.619316 TGTCTTGAATAAACATAAAATGAACCG 57.381 29.630 0.00 0.00 0.00 4.44
133 134 4.729227 ACAACCCAATCGAACTTGTTTT 57.271 36.364 0.00 0.00 0.00 2.43
135 136 5.838531 TTTACAACCCAATCGAACTTGTT 57.161 34.783 0.00 0.00 0.00 2.83
140 141 8.806177 AAAATAGTTTTACAACCCAATCGAAC 57.194 30.769 0.00 0.00 32.70 3.95
191 192 8.484641 TTTTCATATCAAAACAAGTTTGCACA 57.515 26.923 0.00 0.00 45.38 4.57
227 228 4.418328 TTTGCCCATCCCGTCCGG 62.418 66.667 0.00 0.00 0.00 5.14
304 307 1.616930 TTTGGGTAGGGCGATGGGA 60.617 57.895 0.00 0.00 0.00 4.37
312 315 0.688487 TTCAGTCCGTTTGGGTAGGG 59.312 55.000 0.00 0.00 37.00 3.53
324 327 0.526211 GTTTTGCCCGGATTCAGTCC 59.474 55.000 0.73 0.00 44.10 3.85
407 410 7.043325 GCTTCATCTGTACTAATAGTTTCCACG 60.043 40.741 0.00 0.00 0.00 4.94
408 411 7.764443 TGCTTCATCTGTACTAATAGTTTCCAC 59.236 37.037 0.00 0.00 0.00 4.02
419 426 7.898014 TCCTTCTTATGCTTCATCTGTACTA 57.102 36.000 0.00 0.00 0.00 1.82
423 430 7.765695 TTTTTCCTTCTTATGCTTCATCTGT 57.234 32.000 0.00 0.00 0.00 3.41
606 617 3.154473 CCGGCTGGCTGGCTAGTA 61.154 66.667 15.58 0.00 39.32 1.82
751 768 3.473647 TGCATGCGAGGGAGGGAG 61.474 66.667 14.09 0.00 0.00 4.30
752 769 3.785859 GTGCATGCGAGGGAGGGA 61.786 66.667 14.09 0.00 0.00 4.20
753 770 4.100084 TGTGCATGCGAGGGAGGG 62.100 66.667 14.09 0.00 0.00 4.30
754 771 2.513204 CTGTGCATGCGAGGGAGG 60.513 66.667 14.09 0.00 0.00 4.30
755 772 3.200593 GCTGTGCATGCGAGGGAG 61.201 66.667 14.09 5.12 0.00 4.30
792 809 2.281484 GGTGGAGACGGCAAGCAA 60.281 61.111 0.00 0.00 0.00 3.91
984 1217 2.203938 GTGGAGGTGGGTGGAGGA 60.204 66.667 0.00 0.00 0.00 3.71
1339 1798 1.595382 GATCTCCCCGGCGTTCATG 60.595 63.158 6.01 0.00 0.00 3.07
1685 2154 5.140454 AGGAATCAAGTTAACAGTTTGGCT 58.860 37.500 8.61 0.00 0.00 4.75
1686 2155 5.453567 AGGAATCAAGTTAACAGTTTGGC 57.546 39.130 8.61 0.00 0.00 4.52
1699 2168 6.311935 CACCATGCACATAAAAAGGAATCAAG 59.688 38.462 0.00 0.00 0.00 3.02
1747 2216 3.306166 CGTCTTTGCCGTTATAGGTGAAG 59.694 47.826 0.00 0.00 0.00 3.02
1751 2220 2.613691 CACGTCTTTGCCGTTATAGGT 58.386 47.619 0.00 0.00 36.17 3.08
1759 2228 0.179215 GATCTTGCACGTCTTTGCCG 60.179 55.000 0.00 0.00 42.25 5.69
1793 2262 0.445436 CAAGATCCGTGCTGCAACTC 59.555 55.000 2.77 0.00 0.00 3.01
1798 2267 3.869272 CCGCAAGATCCGTGCTGC 61.869 66.667 15.00 0.00 39.95 5.25
1815 2284 2.494073 AGTAGCAGCCTGTAGACAAGAC 59.506 50.000 0.00 0.00 0.00 3.01
1821 2290 2.215942 TCACAGTAGCAGCCTGTAGA 57.784 50.000 4.19 3.02 41.10 2.59
1845 2323 5.642919 TGTTTCGTTGTGTTTTGGTACTACT 59.357 36.000 0.00 0.00 0.00 2.57
1863 2341 3.207474 CAAGCCCTGATTCTTGTTTCG 57.793 47.619 0.00 0.00 36.01 3.46
1899 2377 4.226168 AGACCTAGCAAATGAAGGTTAGCT 59.774 41.667 8.68 0.00 43.69 3.32
1936 2415 6.438259 TGATCGAGCCTAGTATTGCTATAC 57.562 41.667 9.93 9.93 38.11 1.47
2057 2538 4.688879 CACAGGTTATTTTGCTCTGTCGTA 59.311 41.667 0.00 0.00 36.66 3.43
2060 2541 5.438761 AACACAGGTTATTTTGCTCTGTC 57.561 39.130 0.00 0.00 36.66 3.51
2062 2543 6.863126 CCTTTAACACAGGTTATTTTGCTCTG 59.137 38.462 0.00 0.00 39.15 3.35
2063 2544 6.549736 ACCTTTAACACAGGTTATTTTGCTCT 59.450 34.615 0.00 0.00 42.45 4.09
2064 2545 6.745116 ACCTTTAACACAGGTTATTTTGCTC 58.255 36.000 0.00 0.00 42.45 4.26
2065 2546 6.724893 ACCTTTAACACAGGTTATTTTGCT 57.275 33.333 0.00 0.00 42.45 3.91
2179 2665 8.029522 CACTATATGCACGTACTCCAGATAATT 58.970 37.037 0.00 0.00 0.00 1.40
2180 2666 7.176865 ACACTATATGCACGTACTCCAGATAAT 59.823 37.037 0.00 0.00 0.00 1.28
2181 2667 6.489022 ACACTATATGCACGTACTCCAGATAA 59.511 38.462 0.00 0.00 0.00 1.75
2183 2669 4.827835 ACACTATATGCACGTACTCCAGAT 59.172 41.667 0.00 0.00 0.00 2.90
2186 2672 4.994907 AACACTATATGCACGTACTCCA 57.005 40.909 0.00 0.00 0.00 3.86
2200 2836 9.838339 CCAGAAACTCCAGATAATTAACACTAT 57.162 33.333 0.00 0.00 0.00 2.12
2201 2837 9.042450 TCCAGAAACTCCAGATAATTAACACTA 57.958 33.333 0.00 0.00 0.00 2.74
2202 2838 7.918076 TCCAGAAACTCCAGATAATTAACACT 58.082 34.615 0.00 0.00 0.00 3.55
2260 2898 8.585018 CCTGGTTAGTTAATGACAAATTTTCCT 58.415 33.333 0.00 0.00 0.00 3.36
2267 2905 7.458397 AGATCACCTGGTTAGTTAATGACAAA 58.542 34.615 0.00 0.00 0.00 2.83
2269 2907 6.351881 GGAGATCACCTGGTTAGTTAATGACA 60.352 42.308 0.00 0.00 0.00 3.58
2270 2908 6.049790 GGAGATCACCTGGTTAGTTAATGAC 58.950 44.000 0.00 0.00 0.00 3.06
2272 2910 5.989477 TGGAGATCACCTGGTTAGTTAATG 58.011 41.667 10.73 0.00 0.00 1.90
2273 2911 6.831664 ATGGAGATCACCTGGTTAGTTAAT 57.168 37.500 10.73 0.00 0.00 1.40
2274 2912 6.636454 AATGGAGATCACCTGGTTAGTTAA 57.364 37.500 10.73 0.00 0.00 2.01
2276 2914 5.726793 ACTAATGGAGATCACCTGGTTAGTT 59.273 40.000 19.25 10.65 33.87 2.24
2278 2916 5.605534 CACTAATGGAGATCACCTGGTTAG 58.394 45.833 10.73 15.69 0.00 2.34
2279 2917 5.614324 CACTAATGGAGATCACCTGGTTA 57.386 43.478 10.73 6.45 0.00 2.85
2280 2918 4.494091 CACTAATGGAGATCACCTGGTT 57.506 45.455 10.73 5.69 0.00 3.67
2444 3082 4.679373 TTGTCTCTCTCACTTTGCTCTT 57.321 40.909 0.00 0.00 0.00 2.85
2445 3083 4.888326 ATTGTCTCTCTCACTTTGCTCT 57.112 40.909 0.00 0.00 0.00 4.09
2526 3166 3.458118 TGGGGCTTTAGCTTAGCTATGAA 59.542 43.478 15.16 6.49 41.01 2.57
2527 3167 3.045634 TGGGGCTTTAGCTTAGCTATGA 58.954 45.455 15.16 6.25 41.01 2.15
2529 3169 4.519906 TTTGGGGCTTTAGCTTAGCTAT 57.480 40.909 15.16 0.00 41.01 2.97
2589 3231 1.070134 GGGGAAAAGGTGGCAAGAAAC 59.930 52.381 0.00 0.00 0.00 2.78
2606 3248 4.704833 CTGGTGTGAGCGTGGGGG 62.705 72.222 0.00 0.00 0.00 5.40
2664 3306 0.803117 CTCGTAGAACGGAGCACAGA 59.197 55.000 0.00 0.00 42.81 3.41
2666 3308 1.211969 GCTCGTAGAACGGAGCACA 59.788 57.895 8.06 0.00 42.81 4.57
2726 3368 1.882625 GTCAGTCTGCACGCACACA 60.883 57.895 0.28 0.00 0.00 3.72
2780 3422 2.359107 TGCCGCTTCAGCTCCTTG 60.359 61.111 0.00 0.00 39.32 3.61
2801 3443 1.005804 CCATCATCGTCATCGCCGAG 61.006 60.000 0.00 0.00 37.81 4.63
3132 3774 3.461773 CCTCCGGTGAGATGCGGT 61.462 66.667 4.76 0.00 41.42 5.68
3301 3952 2.591715 GGATAATGCCGGTGCGCT 60.592 61.111 9.73 0.00 41.78 5.92
3379 4030 4.380867 CCCAAAGCTTGCGATGACTAAAAT 60.381 41.667 0.00 0.00 0.00 1.82
3388 4236 1.228552 ACACCCCAAAGCTTGCGAT 60.229 52.632 0.00 0.00 0.00 4.58
3922 5254 7.500720 TCATAAATAATCCTGCATGACACAG 57.499 36.000 0.00 0.00 34.82 3.66
4086 5418 2.305858 ACCCTAGAAACTCCACGAGT 57.694 50.000 0.00 0.00 45.64 4.18
4087 5419 2.094130 GGAACCCTAGAAACTCCACGAG 60.094 54.545 0.00 0.00 35.52 4.18
4088 5420 1.897802 GGAACCCTAGAAACTCCACGA 59.102 52.381 0.00 0.00 0.00 4.35
4089 5421 1.621814 TGGAACCCTAGAAACTCCACG 59.378 52.381 0.00 0.00 31.19 4.94
4104 5440 2.191128 AGCACAGGACTCAATGGAAC 57.809 50.000 0.00 0.00 0.00 3.62
4105 5441 2.906389 ACTAGCACAGGACTCAATGGAA 59.094 45.455 0.00 0.00 0.00 3.53
4109 5445 4.624125 GCCTTAACTAGCACAGGACTCAAT 60.624 45.833 5.97 0.00 0.00 2.57
4146 5483 7.931407 TGCATGTACCTATATTTTACAGGTGAG 59.069 37.037 4.62 0.00 42.65 3.51
4230 6978 8.357402 AGAAAGCTAAACATGATAAAAACGGTT 58.643 29.630 0.00 0.00 0.00 4.44
4232 6980 7.201350 GCAGAAAGCTAAACATGATAAAAACGG 60.201 37.037 0.00 0.00 41.15 4.44
4283 7032 9.466497 AGCCTTGAAGTTGAGATTATTATTCAA 57.534 29.630 0.00 0.00 34.87 2.69
4284 7033 9.466497 AAGCCTTGAAGTTGAGATTATTATTCA 57.534 29.630 0.00 0.00 0.00 2.57
4285 7034 9.943163 GAAGCCTTGAAGTTGAGATTATTATTC 57.057 33.333 0.00 0.00 0.00 1.75
4286 7035 8.907885 GGAAGCCTTGAAGTTGAGATTATTATT 58.092 33.333 0.00 0.00 0.00 1.40
4287 7036 8.055181 TGGAAGCCTTGAAGTTGAGATTATTAT 58.945 33.333 0.00 0.00 0.00 1.28
4288 7037 7.402054 TGGAAGCCTTGAAGTTGAGATTATTA 58.598 34.615 0.00 0.00 0.00 0.98
4290 7039 5.819991 TGGAAGCCTTGAAGTTGAGATTAT 58.180 37.500 0.00 0.00 0.00 1.28
4291 7040 5.241403 TGGAAGCCTTGAAGTTGAGATTA 57.759 39.130 0.00 0.00 0.00 1.75
4292 7041 4.104383 TGGAAGCCTTGAAGTTGAGATT 57.896 40.909 0.00 0.00 0.00 2.40
4293 7042 3.795688 TGGAAGCCTTGAAGTTGAGAT 57.204 42.857 0.00 0.00 0.00 2.75
4294 7043 3.072915 TCATGGAAGCCTTGAAGTTGAGA 59.927 43.478 0.00 0.00 35.26 3.27
4295 7044 3.415212 TCATGGAAGCCTTGAAGTTGAG 58.585 45.455 0.00 0.00 35.26 3.02
4297 7046 2.490903 CCTCATGGAAGCCTTGAAGTTG 59.509 50.000 0.00 0.00 37.27 3.16
4298 7047 2.376518 TCCTCATGGAAGCCTTGAAGTT 59.623 45.455 0.00 0.00 39.87 2.66
4299 7048 1.988107 TCCTCATGGAAGCCTTGAAGT 59.012 47.619 0.00 0.00 39.87 3.01
4300 7049 2.641305 CTCCTCATGGAAGCCTTGAAG 58.359 52.381 0.00 0.00 42.66 3.02
4301 7050 1.283029 CCTCCTCATGGAAGCCTTGAA 59.717 52.381 0.00 0.00 42.66 2.69
4302 7051 0.914644 CCTCCTCATGGAAGCCTTGA 59.085 55.000 0.00 0.00 42.66 3.02
4303 7052 0.914644 TCCTCCTCATGGAAGCCTTG 59.085 55.000 0.00 0.00 42.66 3.61
4304 7053 1.673767 TTCCTCCTCATGGAAGCCTT 58.326 50.000 0.00 0.00 42.66 4.35
4305 7054 1.673767 TTTCCTCCTCATGGAAGCCT 58.326 50.000 0.00 0.00 43.48 4.58
4306 7055 2.025887 TCTTTTCCTCCTCATGGAAGCC 60.026 50.000 0.00 0.00 43.48 4.35
4309 7058 5.519183 TCAATCTTTTCCTCCTCATGGAA 57.481 39.130 0.00 0.00 42.66 3.53
4310 7059 5.722172 ATCAATCTTTTCCTCCTCATGGA 57.278 39.130 0.00 0.00 40.69 3.41
4311 7060 6.658391 GGATATCAATCTTTTCCTCCTCATGG 59.342 42.308 4.83 0.00 32.29 3.66
4312 7061 7.460071 AGGATATCAATCTTTTCCTCCTCATG 58.540 38.462 4.83 0.00 31.06 3.07
4313 7062 7.645132 AGGATATCAATCTTTTCCTCCTCAT 57.355 36.000 4.83 0.00 31.06 2.90
4314 7063 8.600668 CATAGGATATCAATCTTTTCCTCCTCA 58.399 37.037 4.83 0.00 37.89 3.86
4316 7065 8.748179 TCATAGGATATCAATCTTTTCCTCCT 57.252 34.615 4.83 0.00 37.89 3.69
4317 7066 9.393512 CATCATAGGATATCAATCTTTTCCTCC 57.606 37.037 4.83 0.00 37.89 4.30
4320 7069 9.956640 ACTCATCATAGGATATCAATCTTTTCC 57.043 33.333 4.83 0.00 32.29 3.13
4323 7072 9.650539 CGAACTCATCATAGGATATCAATCTTT 57.349 33.333 4.83 0.00 32.29 2.52
4324 7073 7.763528 GCGAACTCATCATAGGATATCAATCTT 59.236 37.037 4.83 0.00 32.29 2.40
4325 7074 7.264221 GCGAACTCATCATAGGATATCAATCT 58.736 38.462 4.83 0.00 32.29 2.40
4326 7075 6.478344 GGCGAACTCATCATAGGATATCAATC 59.522 42.308 4.83 0.00 30.87 2.67
4327 7076 6.070596 TGGCGAACTCATCATAGGATATCAAT 60.071 38.462 4.83 0.00 30.87 2.57
4328 7077 5.245977 TGGCGAACTCATCATAGGATATCAA 59.754 40.000 4.83 0.00 30.87 2.57
4329 7078 4.772100 TGGCGAACTCATCATAGGATATCA 59.228 41.667 4.83 0.00 30.87 2.15
4330 7079 5.330455 TGGCGAACTCATCATAGGATATC 57.670 43.478 0.00 0.00 30.87 1.63
4331 7080 5.946942 ATGGCGAACTCATCATAGGATAT 57.053 39.130 0.00 0.00 30.87 1.63
4332 7081 5.745312 AATGGCGAACTCATCATAGGATA 57.255 39.130 0.00 0.00 30.87 2.59
4333 7082 4.630644 AATGGCGAACTCATCATAGGAT 57.369 40.909 0.00 0.00 0.00 3.24
4334 7083 4.422073 AAATGGCGAACTCATCATAGGA 57.578 40.909 0.00 0.00 0.00 2.94
4335 7084 4.150627 CGTAAATGGCGAACTCATCATAGG 59.849 45.833 0.00 0.00 0.00 2.57
4336 7085 4.982295 TCGTAAATGGCGAACTCATCATAG 59.018 41.667 0.00 0.00 35.28 2.23
4337 7086 4.939271 TCGTAAATGGCGAACTCATCATA 58.061 39.130 0.00 0.00 35.28 2.15
4338 7087 3.792401 TCGTAAATGGCGAACTCATCAT 58.208 40.909 0.00 0.00 35.28 2.45
4339 7088 3.239587 TCGTAAATGGCGAACTCATCA 57.760 42.857 0.00 0.00 35.28 3.07
4340 7089 3.555956 ACATCGTAAATGGCGAACTCATC 59.444 43.478 0.00 0.00 41.84 2.92
4341 7090 3.531538 ACATCGTAAATGGCGAACTCAT 58.468 40.909 0.00 0.00 41.84 2.90
4342 7091 2.967362 ACATCGTAAATGGCGAACTCA 58.033 42.857 0.00 0.00 41.84 3.41
4343 7092 4.092968 AGAAACATCGTAAATGGCGAACTC 59.907 41.667 0.00 0.00 41.84 3.01
4344 7093 4.000988 AGAAACATCGTAAATGGCGAACT 58.999 39.130 0.00 0.00 41.84 3.01
4345 7094 4.092968 AGAGAAACATCGTAAATGGCGAAC 59.907 41.667 0.00 0.00 41.84 3.95
4346 7095 4.250464 AGAGAAACATCGTAAATGGCGAA 58.750 39.130 0.00 0.00 41.84 4.70
4347 7096 3.857052 AGAGAAACATCGTAAATGGCGA 58.143 40.909 0.00 0.00 42.75 5.54
4348 7097 4.600012 AAGAGAAACATCGTAAATGGCG 57.400 40.909 0.00 0.00 0.00 5.69
4349 7098 9.434559 GTAATAAAGAGAAACATCGTAAATGGC 57.565 33.333 0.00 0.00 0.00 4.40
4356 7105 9.436957 ACAAGATGTAATAAAGAGAAACATCGT 57.563 29.630 7.80 2.99 46.97 3.73
4357 7106 9.694520 CACAAGATGTAATAAAGAGAAACATCG 57.305 33.333 7.80 0.00 46.97 3.84
4382 7131 9.692749 GTCCGATTCTGTATTAGTGAATAATCA 57.307 33.333 0.00 0.00 35.63 2.57
4383 7132 9.692749 TGTCCGATTCTGTATTAGTGAATAATC 57.307 33.333 0.00 0.00 35.63 1.75
4386 7135 9.476202 CAATGTCCGATTCTGTATTAGTGAATA 57.524 33.333 0.00 0.00 31.49 1.75
4387 7136 7.442364 CCAATGTCCGATTCTGTATTAGTGAAT 59.558 37.037 0.00 0.00 33.69 2.57
4388 7137 6.761242 CCAATGTCCGATTCTGTATTAGTGAA 59.239 38.462 0.00 0.00 0.00 3.18
4389 7138 6.097696 TCCAATGTCCGATTCTGTATTAGTGA 59.902 38.462 0.00 0.00 0.00 3.41
4390 7139 6.280643 TCCAATGTCCGATTCTGTATTAGTG 58.719 40.000 0.00 0.00 0.00 2.74
4391 7140 6.463049 CCTCCAATGTCCGATTCTGTATTAGT 60.463 42.308 0.00 0.00 0.00 2.24
4392 7141 5.928839 CCTCCAATGTCCGATTCTGTATTAG 59.071 44.000 0.00 0.00 0.00 1.73
4393 7142 5.741964 GCCTCCAATGTCCGATTCTGTATTA 60.742 44.000 0.00 0.00 0.00 0.98
4394 7143 4.708177 CCTCCAATGTCCGATTCTGTATT 58.292 43.478 0.00 0.00 0.00 1.89
4395 7144 3.495100 GCCTCCAATGTCCGATTCTGTAT 60.495 47.826 0.00 0.00 0.00 2.29
4396 7145 2.158957 GCCTCCAATGTCCGATTCTGTA 60.159 50.000 0.00 0.00 0.00 2.74
4397 7146 1.407437 GCCTCCAATGTCCGATTCTGT 60.407 52.381 0.00 0.00 0.00 3.41
4398 7147 1.303309 GCCTCCAATGTCCGATTCTG 58.697 55.000 0.00 0.00 0.00 3.02
4399 7148 0.179073 CGCCTCCAATGTCCGATTCT 60.179 55.000 0.00 0.00 0.00 2.40
4400 7149 2.311294 CGCCTCCAATGTCCGATTC 58.689 57.895 0.00 0.00 0.00 2.52
4401 7150 4.540153 CGCCTCCAATGTCCGATT 57.460 55.556 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.