Multiple sequence alignment - TraesCS5B01G228500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G228500 chr5B 100.000 5532 0 0 1 5532 405557241 405562772 0.000000e+00 10216.0
1 TraesCS5B01G228500 chr5B 98.630 73 1 0 4899 4971 221096759 221096687 4.500000e-26 130.0
2 TraesCS5B01G228500 chr5D 92.621 4377 209 45 227 4543 345974442 345970120 0.000000e+00 6189.0
3 TraesCS5B01G228500 chr5D 94.444 378 18 1 4964 5341 345969815 345969441 3.720000e-161 579.0
4 TraesCS5B01G228500 chr5D 100.000 31 0 0 4854 4884 430916623 430916653 2.150000e-04 58.4
5 TraesCS5B01G228500 chr5A 92.624 4067 203 48 877 4885 445205859 445209886 0.000000e+00 5758.0
6 TraesCS5B01G228500 chr5A 87.158 584 24 17 4963 5532 445219659 445220205 2.830000e-172 616.0
7 TraesCS5B01G228500 chr5A 87.158 584 24 16 4963 5532 445232047 445232593 2.830000e-172 616.0
8 TraesCS5B01G228500 chr5A 86.986 584 25 16 4963 5532 445221109 445221655 1.320000e-170 610.0
9 TraesCS5B01G228500 chr5A 86.986 584 25 19 4963 5532 445226578 445227124 1.320000e-170 610.0
10 TraesCS5B01G228500 chr5A 86.644 584 26 20 4963 5532 445209882 445210427 2.850000e-167 599.0
11 TraesCS5B01G228500 chr5A 90.560 339 21 4 224 562 445205040 445205367 6.580000e-119 438.0
12 TraesCS5B01G228500 chr5A 87.500 176 9 4 224 396 445204477 445204642 2.030000e-44 191.0
13 TraesCS5B01G228500 chr5A 86.503 163 17 4 4550 4711 354544076 354544234 2.050000e-39 174.0
14 TraesCS5B01G228500 chr2B 97.758 223 5 0 6 228 763962247 763962025 8.690000e-103 385.0
15 TraesCS5B01G228500 chr7B 97.717 219 5 0 10 228 529827786 529827568 1.450000e-100 377.0
16 TraesCS5B01G228500 chr7B 87.578 161 15 4 4554 4712 453623446 453623289 1.220000e-41 182.0
17 TraesCS5B01G228500 chr7B 100.000 71 0 0 4899 4969 245179308 245179238 1.250000e-26 132.0
18 TraesCS5B01G228500 chr2A 97.309 223 5 1 7 228 65402296 65402518 1.450000e-100 377.0
19 TraesCS5B01G228500 chr2A 96.000 225 8 1 10 233 258346965 258346741 1.130000e-96 364.0
20 TraesCS5B01G228500 chr1B 96.903 226 6 1 4 228 484209394 484209169 1.450000e-100 377.0
21 TraesCS5B01G228500 chr1B 100.000 69 0 0 4899 4967 552101741 552101673 1.620000e-25 128.0
22 TraesCS5B01G228500 chr6D 96.000 225 9 0 8 232 217731941 217732165 3.150000e-97 366.0
23 TraesCS5B01G228500 chr3B 95.595 227 10 0 6 232 775688074 775687848 1.130000e-96 364.0
24 TraesCS5B01G228500 chr3A 95.982 224 9 0 5 228 535225518 535225741 1.130000e-96 364.0
25 TraesCS5B01G228500 chr3A 98.611 72 0 1 4899 4969 607830393 607830464 5.820000e-25 126.0
26 TraesCS5B01G228500 chr3A 97.260 73 2 0 4899 4971 607461791 607461719 2.090000e-24 124.0
27 TraesCS5B01G228500 chr6B 95.556 225 10 0 4 228 558656066 558656290 1.470000e-95 361.0
28 TraesCS5B01G228500 chr7D 87.578 161 15 4 4554 4712 436961951 436961794 1.220000e-41 182.0
29 TraesCS5B01G228500 chr4D 87.117 163 17 4 4552 4712 74079345 74079505 1.220000e-41 182.0
30 TraesCS5B01G228500 chr7A 86.957 161 16 4 4554 4712 486930096 486929939 5.700000e-40 176.0
31 TraesCS5B01G228500 chr7A 97.333 75 0 2 4899 4971 257343 257269 5.820000e-25 126.0
32 TraesCS5B01G228500 chr7A 97.297 74 2 0 4899 4972 437058080 437058153 5.820000e-25 126.0
33 TraesCS5B01G228500 chr7A 96.053 76 2 1 4899 4974 33185346 33185420 7.530000e-24 122.0
34 TraesCS5B01G228500 chr3D 86.420 162 21 1 4558 4718 347585387 347585226 5.700000e-40 176.0
35 TraesCS5B01G228500 chr2D 86.335 161 21 1 4551 4711 617101054 617101213 2.050000e-39 174.0
36 TraesCS5B01G228500 chr1A 83.422 187 27 4 4550 4733 385659126 385659311 2.650000e-38 171.0
37 TraesCS5B01G228500 chr6A 98.684 76 1 0 4899 4974 402953549 402953474 9.670000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G228500 chr5B 405557241 405562772 5531 False 10216.0 10216 100.0000 1 5532 1 chr5B.!!$F1 5531
1 TraesCS5B01G228500 chr5D 345969441 345974442 5001 True 3384.0 6189 93.5325 227 5341 2 chr5D.!!$R1 5114
2 TraesCS5B01G228500 chr5A 445204477 445210427 5950 False 1746.5 5758 89.3320 224 5532 4 chr5A.!!$F4 5308
3 TraesCS5B01G228500 chr5A 445232047 445232593 546 False 616.0 616 87.1580 4963 5532 1 chr5A.!!$F3 569
4 TraesCS5B01G228500 chr5A 445219659 445221655 1996 False 613.0 616 87.0720 4963 5532 2 chr5A.!!$F5 569
5 TraesCS5B01G228500 chr5A 445226578 445227124 546 False 610.0 610 86.9860 4963 5532 1 chr5A.!!$F2 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.314898 CGCGTAGTTCTAGGTCGACG 60.315 60.0 9.92 12.97 36.21 5.12 F
360 917 0.586802 GACCAACACCGCAAAGTCTC 59.413 55.0 0.00 0.00 0.00 3.36 F
1090 1887 0.606401 CATCACCACACAGACACCCC 60.606 60.0 0.00 0.00 0.00 4.95 F
1662 2459 0.613260 TAGCGATTGGTCCAGTTGCT 59.387 50.0 27.18 27.18 42.22 3.91 F
3129 3942 0.473886 ACAACAGGTAGCTCCACCCT 60.474 55.0 1.82 0.00 39.62 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1215 2012 0.619255 TCGGTCTGGATTGGCCCTTA 60.619 55.000 0.00 0.0 34.97 2.69 R
1330 2127 1.067283 ACAGAGACTTGCGATGGTCAG 60.067 52.381 0.00 0.0 35.18 3.51 R
2722 3530 0.546122 TGGTCCATATCACTGTGCCC 59.454 55.000 2.12 0.0 0.00 5.36 R
3386 4201 2.031807 CCAGATGAGAATTGCTGCTTCG 59.968 50.000 0.00 0.0 0.00 3.79 R
4919 5766 0.328258 CCGAGTGGATTGAAGGGGTT 59.672 55.000 0.00 0.0 37.49 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.273674 GGCTTTTATTACTACCTCCGTCT 57.726 43.478 0.00 0.00 0.00 4.18
23 24 5.288015 GGCTTTTATTACTACCTCCGTCTC 58.712 45.833 0.00 0.00 0.00 3.36
24 25 4.974888 GCTTTTATTACTACCTCCGTCTCG 59.025 45.833 0.00 0.00 0.00 4.04
36 37 2.933495 CCGTCTCGGTGAATAAGTCA 57.067 50.000 0.00 0.00 42.73 3.41
37 38 3.438297 CCGTCTCGGTGAATAAGTCAT 57.562 47.619 0.00 0.00 42.73 3.06
38 39 3.782046 CCGTCTCGGTGAATAAGTCATT 58.218 45.455 0.00 0.00 42.73 2.57
39 40 3.797256 CCGTCTCGGTGAATAAGTCATTC 59.203 47.826 0.00 0.00 42.73 2.67
40 41 3.482472 CGTCTCGGTGAATAAGTCATTCG 59.518 47.826 0.00 0.00 45.25 3.34
47 48 5.697848 GTGAATAAGTCATTCGCGTAGTT 57.302 39.130 5.77 2.59 45.25 2.24
48 49 5.715264 GTGAATAAGTCATTCGCGTAGTTC 58.285 41.667 5.77 0.29 45.25 3.01
49 50 5.515626 GTGAATAAGTCATTCGCGTAGTTCT 59.484 40.000 5.77 0.00 45.25 3.01
50 51 6.690098 GTGAATAAGTCATTCGCGTAGTTCTA 59.310 38.462 5.77 0.00 45.25 2.10
51 52 6.910972 TGAATAAGTCATTCGCGTAGTTCTAG 59.089 38.462 5.77 0.00 45.25 2.43
52 53 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
53 54 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
54 55 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
55 56 2.031314 TCATTCGCGTAGTTCTAGGTCG 59.969 50.000 5.77 5.99 0.00 4.79
56 57 1.725641 TTCGCGTAGTTCTAGGTCGA 58.274 50.000 5.77 11.56 0.00 4.20
57 58 1.002366 TCGCGTAGTTCTAGGTCGAC 58.998 55.000 7.13 7.13 0.00 4.20
58 59 0.314898 CGCGTAGTTCTAGGTCGACG 60.315 60.000 9.92 12.97 36.21 5.12
59 60 1.002366 GCGTAGTTCTAGGTCGACGA 58.998 55.000 9.92 0.00 35.42 4.20
60 61 1.596727 GCGTAGTTCTAGGTCGACGAT 59.403 52.381 9.92 3.12 35.42 3.73
61 62 2.031437 GCGTAGTTCTAGGTCGACGATT 59.969 50.000 9.92 0.07 35.42 3.34
62 63 3.486542 GCGTAGTTCTAGGTCGACGATTT 60.487 47.826 9.92 0.00 35.42 2.17
63 64 4.260375 GCGTAGTTCTAGGTCGACGATTTA 60.260 45.833 9.92 0.00 35.42 1.40
64 65 5.727791 GCGTAGTTCTAGGTCGACGATTTAA 60.728 44.000 9.92 0.00 35.42 1.52
65 66 5.674580 CGTAGTTCTAGGTCGACGATTTAAC 59.325 44.000 9.92 9.89 35.42 2.01
66 67 5.893897 AGTTCTAGGTCGACGATTTAACT 57.106 39.130 9.92 11.88 0.00 2.24
67 68 6.992063 AGTTCTAGGTCGACGATTTAACTA 57.008 37.500 9.92 2.53 0.00 2.24
68 69 7.565323 AGTTCTAGGTCGACGATTTAACTAT 57.435 36.000 9.92 0.00 0.00 2.12
69 70 7.638134 AGTTCTAGGTCGACGATTTAACTATC 58.362 38.462 9.92 0.00 0.00 2.08
70 71 7.498570 AGTTCTAGGTCGACGATTTAACTATCT 59.501 37.037 9.92 0.00 0.00 1.98
71 72 8.768955 GTTCTAGGTCGACGATTTAACTATCTA 58.231 37.037 9.92 0.00 0.00 1.98
72 73 8.893219 TCTAGGTCGACGATTTAACTATCTAA 57.107 34.615 9.92 0.00 0.00 2.10
73 74 9.330063 TCTAGGTCGACGATTTAACTATCTAAA 57.670 33.333 9.92 0.00 0.00 1.85
136 137 6.716934 ACATCCGTGTAGAAATCTAGTGAT 57.283 37.500 0.00 0.00 36.63 3.06
137 138 7.818997 ACATCCGTGTAGAAATCTAGTGATA 57.181 36.000 0.00 0.00 36.63 2.15
138 139 8.410673 ACATCCGTGTAGAAATCTAGTGATAT 57.589 34.615 0.00 0.00 36.63 1.63
139 140 9.516546 ACATCCGTGTAGAAATCTAGTGATATA 57.483 33.333 0.00 0.00 36.63 0.86
140 141 9.776158 CATCCGTGTAGAAATCTAGTGATATAC 57.224 37.037 0.00 0.00 31.70 1.47
141 142 9.742144 ATCCGTGTAGAAATCTAGTGATATACT 57.258 33.333 0.00 0.00 43.56 2.12
142 143 9.570468 TCCGTGTAGAAATCTAGTGATATACTT 57.430 33.333 0.00 0.00 40.89 2.24
186 187 6.757897 TTTAATTGCTCAAATCGATGACCT 57.242 33.333 0.00 0.00 0.00 3.85
187 188 7.857734 TTTAATTGCTCAAATCGATGACCTA 57.142 32.000 0.00 0.00 0.00 3.08
188 189 5.998454 AATTGCTCAAATCGATGACCTAG 57.002 39.130 0.00 0.00 0.00 3.02
189 190 4.736126 TTGCTCAAATCGATGACCTAGA 57.264 40.909 0.00 0.00 0.00 2.43
190 191 4.736126 TGCTCAAATCGATGACCTAGAA 57.264 40.909 0.00 0.00 0.00 2.10
191 192 4.433615 TGCTCAAATCGATGACCTAGAAC 58.566 43.478 0.00 0.00 0.00 3.01
192 193 4.160439 TGCTCAAATCGATGACCTAGAACT 59.840 41.667 0.00 0.00 0.00 3.01
193 194 5.359860 TGCTCAAATCGATGACCTAGAACTA 59.640 40.000 0.00 0.00 0.00 2.24
194 195 5.688176 GCTCAAATCGATGACCTAGAACTAC 59.312 44.000 0.00 0.00 0.00 2.73
195 196 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
196 197 5.356190 TCAAATCGATGACCTAGAACTACGT 59.644 40.000 0.00 0.00 0.00 3.57
197 198 4.815040 ATCGATGACCTAGAACTACGTG 57.185 45.455 0.00 0.00 0.00 4.49
198 199 2.941064 TCGATGACCTAGAACTACGTGG 59.059 50.000 0.00 0.00 0.00 4.94
199 200 2.941064 CGATGACCTAGAACTACGTGGA 59.059 50.000 5.70 0.00 0.00 4.02
200 201 3.564644 CGATGACCTAGAACTACGTGGAT 59.435 47.826 5.70 0.00 0.00 3.41
201 202 4.554919 CGATGACCTAGAACTACGTGGATG 60.555 50.000 5.70 0.00 0.00 3.51
202 203 3.959293 TGACCTAGAACTACGTGGATGA 58.041 45.455 5.70 0.00 0.00 2.92
203 204 3.693085 TGACCTAGAACTACGTGGATGAC 59.307 47.826 5.70 0.00 0.00 3.06
204 205 3.946558 GACCTAGAACTACGTGGATGACT 59.053 47.826 5.70 1.90 0.00 3.41
205 206 4.342359 ACCTAGAACTACGTGGATGACTT 58.658 43.478 5.70 0.00 0.00 3.01
206 207 5.503927 ACCTAGAACTACGTGGATGACTTA 58.496 41.667 5.70 0.00 0.00 2.24
207 208 6.127793 ACCTAGAACTACGTGGATGACTTAT 58.872 40.000 5.70 0.00 0.00 1.73
208 209 6.606395 ACCTAGAACTACGTGGATGACTTATT 59.394 38.462 5.70 0.00 0.00 1.40
209 210 7.140048 CCTAGAACTACGTGGATGACTTATTC 58.860 42.308 5.70 0.00 0.00 1.75
210 211 6.525578 AGAACTACGTGGATGACTTATTCA 57.474 37.500 5.70 0.00 39.11 2.57
211 212 6.331061 AGAACTACGTGGATGACTTATTCAC 58.669 40.000 5.70 0.00 41.19 3.18
212 213 5.007385 ACTACGTGGATGACTTATTCACC 57.993 43.478 5.70 0.00 41.51 4.02
213 214 4.710375 ACTACGTGGATGACTTATTCACCT 59.290 41.667 5.70 0.00 41.51 4.00
214 215 5.889853 ACTACGTGGATGACTTATTCACCTA 59.110 40.000 5.70 0.00 41.51 3.08
215 216 5.263968 ACGTGGATGACTTATTCACCTAG 57.736 43.478 0.00 0.00 41.51 3.02
216 217 4.954202 ACGTGGATGACTTATTCACCTAGA 59.046 41.667 0.00 0.00 41.51 2.43
217 218 5.163540 ACGTGGATGACTTATTCACCTAGAC 60.164 44.000 0.00 0.00 41.51 2.59
218 219 5.282510 GTGGATGACTTATTCACCTAGACG 58.717 45.833 0.00 0.00 39.07 4.18
219 220 4.341235 TGGATGACTTATTCACCTAGACGG 59.659 45.833 0.00 0.00 36.92 4.79
220 221 4.583489 GGATGACTTATTCACCTAGACGGA 59.417 45.833 0.00 0.00 36.92 4.69
221 222 5.278561 GGATGACTTATTCACCTAGACGGAG 60.279 48.000 0.00 0.00 36.92 4.63
222 223 3.952323 TGACTTATTCACCTAGACGGAGG 59.048 47.826 0.00 0.00 42.89 4.30
245 246 9.504708 GAGGTAGTAGTATTAGTTGCTCATCTA 57.495 37.037 0.00 0.00 0.00 1.98
251 252 9.557338 GTAGTATTAGTTGCTCATCTATTACCG 57.443 37.037 12.06 0.00 0.00 4.02
311 868 6.350110 GGAACTTTCTGCACCAATTATTGCTA 60.350 38.462 10.82 0.00 39.62 3.49
313 870 6.799512 ACTTTCTGCACCAATTATTGCTATC 58.200 36.000 10.82 0.00 39.62 2.08
314 871 5.422666 TTCTGCACCAATTATTGCTATCG 57.577 39.130 10.82 0.00 39.62 2.92
315 872 4.450976 TCTGCACCAATTATTGCTATCGT 58.549 39.130 10.82 0.00 39.62 3.73
316 873 4.881273 TCTGCACCAATTATTGCTATCGTT 59.119 37.500 10.82 0.00 39.62 3.85
317 874 5.356751 TCTGCACCAATTATTGCTATCGTTT 59.643 36.000 10.82 0.00 39.62 3.60
318 875 5.339177 TGCACCAATTATTGCTATCGTTTG 58.661 37.500 10.82 0.00 39.62 2.93
321 878 6.697019 GCACCAATTATTGCTATCGTTTGAAT 59.303 34.615 0.00 0.00 35.74 2.57
322 879 7.860373 GCACCAATTATTGCTATCGTTTGAATA 59.140 33.333 0.00 0.00 35.74 1.75
323 880 9.729023 CACCAATTATTGCTATCGTTTGAATAA 57.271 29.630 0.00 0.00 0.00 1.40
360 917 0.586802 GACCAACACCGCAAAGTCTC 59.413 55.000 0.00 0.00 0.00 3.36
375 932 5.198274 CAAAGTCTCGTGCTTACAAGAAAC 58.802 41.667 0.00 0.00 33.74 2.78
380 937 4.033587 TCTCGTGCTTACAAGAAACAACAC 59.966 41.667 0.00 0.00 33.74 3.32
396 953 7.339466 AGAAACAACACTCCACCATTATTATCC 59.661 37.037 0.00 0.00 0.00 2.59
420 977 5.277297 CGCTATTCACACTGAACTGAACAAA 60.277 40.000 0.00 0.00 39.45 2.83
429 986 4.330074 ACTGAACTGAACAAAACAGTCGAG 59.670 41.667 0.00 0.00 46.01 4.04
448 1005 7.862873 CAGTCGAGCTTTTCTTTTATCCTTTTT 59.137 33.333 0.00 0.00 0.00 1.94
492 1049 6.223852 TGAGAGAAACAGATGGTTGTTCTAC 58.776 40.000 0.00 0.00 40.24 2.59
597 1154 3.435671 CCTCGTACGAAAAGATTTGCCTT 59.564 43.478 20.00 0.00 0.00 4.35
626 1183 1.604693 CCGAGCTCAAGGTACGTGTTT 60.605 52.381 15.40 0.00 39.30 2.83
634 1191 6.633668 CTCAAGGTACGTGTTTATCTTGAG 57.366 41.667 19.45 19.45 46.08 3.02
663 1220 6.321181 GCATCACCTATATTTCTCCCAAAACA 59.679 38.462 0.00 0.00 0.00 2.83
737 1294 5.536554 TCTAGTACGAAAACTAGTCACGG 57.463 43.478 17.56 2.89 46.07 4.94
744 1301 4.751098 ACGAAAACTAGTCACGGCAAAATA 59.249 37.500 16.39 0.00 0.00 1.40
948 1725 5.865085 TGCAATCTTGGAGTACTGTAAACT 58.135 37.500 0.00 0.00 0.00 2.66
979 1776 3.539604 CATGCCCTCTCCAGTTCTAAAG 58.460 50.000 0.00 0.00 0.00 1.85
985 1782 5.586643 GCCCTCTCCAGTTCTAAAGTTAATG 59.413 44.000 0.00 0.00 0.00 1.90
1012 1809 7.839680 ACTGTTTCTCCAGGATAACAAAAAT 57.160 32.000 14.91 3.29 36.75 1.82
1090 1887 0.606401 CATCACCACACAGACACCCC 60.606 60.000 0.00 0.00 0.00 4.95
1179 1976 6.293626 CCACAGAGTTTACAGAAACATTGAGG 60.294 42.308 3.60 5.32 46.30 3.86
1215 2012 1.447838 CAACCCGCTGCGTCAGTAT 60.448 57.895 21.59 4.15 33.43 2.12
1228 2025 2.104111 CGTCAGTATAAGGGCCAATCCA 59.896 50.000 6.18 0.00 36.21 3.41
1269 2066 1.202940 GGGCTGGAGTTCTTGTTTCCT 60.203 52.381 0.00 0.00 32.12 3.36
1330 2127 3.324035 GCGATCTGATTGCCGGAC 58.676 61.111 17.41 0.00 33.42 4.79
1344 2141 1.079819 CGGACTGACCATCGCAAGT 60.080 57.895 0.00 0.00 38.90 3.16
1350 2147 0.969149 TGACCATCGCAAGTCTCTGT 59.031 50.000 0.00 0.00 39.48 3.41
1441 2238 4.155462 CCTGACATTGAATGTTGGACTCTG 59.845 45.833 19.60 8.25 45.03 3.35
1473 2270 3.809832 TGGCTATTCGAAGCTTGCTAATC 59.190 43.478 2.10 0.00 42.37 1.75
1502 2299 3.190535 CGCAGTATGGGCTTTGTAAGTTT 59.809 43.478 0.00 0.00 43.90 2.66
1563 2360 6.755141 ACATTTAAGCTTGCTTTGCTATCATG 59.245 34.615 13.27 7.88 40.22 3.07
1573 2370 8.915871 TTGCTTTGCTATCATGATTTACTTTC 57.084 30.769 14.65 0.33 0.00 2.62
1605 2402 2.544721 TCAGACTCCAGCTTCATTCCT 58.455 47.619 0.00 0.00 0.00 3.36
1662 2459 0.613260 TAGCGATTGGTCCAGTTGCT 59.387 50.000 27.18 27.18 42.22 3.91
1840 2637 7.088589 AGTAAAAGCTTGCACATAATGTAGG 57.911 36.000 0.00 0.00 0.00 3.18
1841 2638 5.982890 AAAAGCTTGCACATAATGTAGGT 57.017 34.783 0.00 0.00 0.00 3.08
1900 2701 7.045126 AGGATTCCTTATAGAGTTCTTGTCG 57.955 40.000 0.00 0.00 0.00 4.35
2014 2815 4.995487 AGGAAAACCGACATAGTTTCTGTC 59.005 41.667 0.00 0.00 36.44 3.51
2223 3024 8.311836 GTCGATATGGAAATAACTTATCTGGGA 58.688 37.037 0.00 0.00 0.00 4.37
2224 3025 8.876181 TCGATATGGAAATAACTTATCTGGGAA 58.124 33.333 0.00 0.00 0.00 3.97
2252 3053 5.814764 ATATCTCTTTGCAAGTGCTGAAG 57.185 39.130 0.00 8.81 42.66 3.02
2260 3061 4.710423 TGCAAGTGCTGAAGTGTTTTTA 57.290 36.364 4.69 0.00 42.66 1.52
2281 3082 6.500684 TTAGATGTTTGGAGCTCATTTGTC 57.499 37.500 17.19 6.13 0.00 3.18
2301 3102 3.632145 GTCATATTCATTTGGAAGCGGGT 59.368 43.478 0.00 0.00 39.30 5.28
2302 3103 3.631686 TCATATTCATTTGGAAGCGGGTG 59.368 43.478 0.00 0.00 39.30 4.61
2380 3182 7.030768 GCATAGGCTAAAGATAGTACTACTGC 58.969 42.308 4.31 5.10 36.96 4.40
2385 3187 6.210078 GCTAAAGATAGTACTACTGCCTGTG 58.790 44.000 4.31 0.00 0.00 3.66
2400 3202 5.012148 ACTGCCTGTGTGAGTTATCTAAAGT 59.988 40.000 0.00 0.00 0.00 2.66
2401 3203 6.210784 ACTGCCTGTGTGAGTTATCTAAAGTA 59.789 38.462 0.00 0.00 0.00 2.24
2687 3495 2.664851 CGTGCCGACAAGCAAGGA 60.665 61.111 0.00 0.00 46.19 3.36
2726 3534 8.599792 AGTGACTAAGTTAGTAAAATTAGGGCA 58.400 33.333 15.52 2.99 43.98 5.36
2731 3539 7.448748 AAGTTAGTAAAATTAGGGCACAGTG 57.551 36.000 0.00 0.00 0.00 3.66
2732 3540 6.775708 AGTTAGTAAAATTAGGGCACAGTGA 58.224 36.000 4.15 0.00 0.00 3.41
2734 3542 8.545472 AGTTAGTAAAATTAGGGCACAGTGATA 58.455 33.333 4.15 0.00 0.00 2.15
2761 3569 5.324409 ACCATACACTGTTTGTCATGGATT 58.676 37.500 12.91 0.00 39.42 3.01
2786 3599 5.458041 AATTTTGACTTGGTCATCAGGTG 57.542 39.130 1.10 0.00 42.40 4.00
2843 3656 4.434713 ACACAAGATTTATTTCACCGGC 57.565 40.909 0.00 0.00 0.00 6.13
3038 3851 2.432510 GCTGCTATGAAGGACTACCAGT 59.567 50.000 0.00 0.00 38.94 4.00
3088 3901 4.150897 TGGAACCATGAACATAGTAGGC 57.849 45.455 0.00 0.00 0.00 3.93
3129 3942 0.473886 ACAACAGGTAGCTCCACCCT 60.474 55.000 1.82 0.00 39.62 4.34
3281 4096 7.189079 TGTATCCAATGTGGTTATGTCAGTA 57.811 36.000 0.00 0.00 39.03 2.74
3326 4141 5.470098 GGTCATCACACCGCTATTCAAATAT 59.530 40.000 0.00 0.00 0.00 1.28
3386 4201 0.535335 TGATCGGCCTTGTGGACTAC 59.465 55.000 0.00 0.00 39.94 2.73
3446 4261 0.323999 TCATTGCTTGCATGGGAGCT 60.324 50.000 9.40 0.00 39.60 4.09
3506 4321 4.072131 TCTTGATTGCTGTAAGGACCAAC 58.928 43.478 0.00 0.00 29.42 3.77
3675 4492 2.692273 GAAACCTTCCCGGCACCACT 62.692 60.000 0.00 0.00 35.61 4.00
3682 4499 1.636148 TCCCGGCACCACTATATACC 58.364 55.000 0.00 0.00 0.00 2.73
3720 4537 4.706842 TCCAGAAGCAAAACTTACTCCT 57.293 40.909 0.00 0.00 39.29 3.69
3943 4765 3.611986 CGAAGAAGACAGAGCTAAAGCAG 59.388 47.826 4.54 0.00 45.16 4.24
3965 4787 5.047092 CAGTGGGATTGCCTAAAATCAGTTT 60.047 40.000 0.00 0.00 38.14 2.66
3967 4789 4.466015 TGGGATTGCCTAAAATCAGTTTCC 59.534 41.667 0.00 0.00 38.14 3.13
4026 4848 7.703328 TGTTGGTCTCAGAAATTTCAAACTAC 58.297 34.615 19.99 11.59 0.00 2.73
4027 4849 7.338196 TGTTGGTCTCAGAAATTTCAAACTACA 59.662 33.333 19.99 13.60 0.00 2.74
4028 4850 7.496529 TGGTCTCAGAAATTTCAAACTACAG 57.503 36.000 19.99 5.16 0.00 2.74
4030 4852 8.208224 TGGTCTCAGAAATTTCAAACTACAGTA 58.792 33.333 19.99 1.00 0.00 2.74
4031 4853 8.496751 GGTCTCAGAAATTTCAAACTACAGTAC 58.503 37.037 19.99 4.49 0.00 2.73
4032 4854 8.496751 GTCTCAGAAATTTCAAACTACAGTACC 58.503 37.037 19.99 0.00 0.00 3.34
4179 5001 2.238898 AGGTACACCCATTCAAGCTACC 59.761 50.000 0.00 0.00 36.42 3.18
4180 5002 2.026636 GGTACACCCATTCAAGCTACCA 60.027 50.000 0.00 0.00 0.00 3.25
4181 5003 2.200373 ACACCCATTCAAGCTACCAC 57.800 50.000 0.00 0.00 0.00 4.16
4182 5004 1.423541 ACACCCATTCAAGCTACCACA 59.576 47.619 0.00 0.00 0.00 4.17
4183 5005 2.041620 ACACCCATTCAAGCTACCACAT 59.958 45.455 0.00 0.00 0.00 3.21
4192 5014 5.483685 TCAAGCTACCACATACACTTTCT 57.516 39.130 0.00 0.00 0.00 2.52
4193 5015 6.599356 TCAAGCTACCACATACACTTTCTA 57.401 37.500 0.00 0.00 0.00 2.10
4200 5023 9.211485 GCTACCACATACACTTTCTAAAAACTA 57.789 33.333 0.00 0.00 0.00 2.24
4305 5130 3.120683 TCGTCATAGAAAAACTGCAAGCG 60.121 43.478 0.00 0.00 37.60 4.68
4335 5160 1.136147 CGAGCACATTGGAAGCAGC 59.864 57.895 0.00 0.00 0.00 5.25
4336 5161 1.579964 CGAGCACATTGGAAGCAGCA 61.580 55.000 0.00 0.00 0.00 4.41
4350 5175 2.341257 AGCAGCAATATATTCCTCGCG 58.659 47.619 0.00 0.00 0.00 5.87
4537 5379 0.618458 TTAAGGCAATCACCGGAGCT 59.382 50.000 9.46 0.00 33.69 4.09
4564 5410 5.598417 TCCGGTTTACTAAATACTACTCCCC 59.402 44.000 0.00 0.00 0.00 4.81
4566 5412 5.600069 CGGTTTACTAAATACTACTCCCCCT 59.400 44.000 0.00 0.00 0.00 4.79
4575 5421 0.613777 CTACTCCCCCTGTTCACCAC 59.386 60.000 0.00 0.00 0.00 4.16
4592 5438 8.038944 TGTTCACCACTATAAGATGTTCTAACC 58.961 37.037 0.00 0.00 0.00 2.85
4595 5441 8.822805 TCACCACTATAAGATGTTCTAACCTTT 58.177 33.333 0.00 0.00 0.00 3.11
4622 5468 7.089770 TCTGAATCAGATGTATATAGCCGTC 57.910 40.000 9.18 0.00 35.39 4.79
4631 5477 7.858382 CAGATGTATATAGCCGTCTATTAGTGC 59.142 40.741 0.00 0.00 36.86 4.40
4652 5498 7.889469 AGTGCATTTATTCACTCATTTCAGTT 58.111 30.769 0.00 0.00 39.11 3.16
4678 5524 9.399797 TCATATGCAGTCCATATTGAAATATCC 57.600 33.333 0.00 0.00 43.03 2.59
4719 5565 5.266788 TGAACGGAGGGAGTAGAAGATAAA 58.733 41.667 0.00 0.00 0.00 1.40
4745 5591 3.088532 AGAAGTGCTCCTCTACTGAGTG 58.911 50.000 0.00 0.00 38.61 3.51
4761 5607 6.526566 ACTGAGTGTGAACGAAGTAAATTC 57.473 37.500 0.00 0.00 45.00 2.17
4775 5622 4.922206 AGTAAATTCTGGAACTCATGGCA 58.078 39.130 0.00 0.00 0.00 4.92
4830 5677 1.866015 AGGATCAACGTGGGATCTCA 58.134 50.000 22.41 0.00 40.74 3.27
4881 5728 2.358615 GGCCTCCCTCTCCAATTTCATT 60.359 50.000 0.00 0.00 0.00 2.57
4882 5729 3.117512 GGCCTCCCTCTCCAATTTCATTA 60.118 47.826 0.00 0.00 0.00 1.90
4883 5730 4.536765 GCCTCCCTCTCCAATTTCATTAA 58.463 43.478 0.00 0.00 0.00 1.40
4884 5731 4.582240 GCCTCCCTCTCCAATTTCATTAAG 59.418 45.833 0.00 0.00 0.00 1.85
4885 5732 5.136105 CCTCCCTCTCCAATTTCATTAAGG 58.864 45.833 0.00 0.00 0.00 2.69
4886 5733 4.536765 TCCCTCTCCAATTTCATTAAGGC 58.463 43.478 0.00 0.00 0.00 4.35
4887 5734 4.230502 TCCCTCTCCAATTTCATTAAGGCT 59.769 41.667 0.00 0.00 0.00 4.58
4888 5735 4.958581 CCCTCTCCAATTTCATTAAGGCTT 59.041 41.667 4.58 4.58 0.00 4.35
4889 5736 5.423290 CCCTCTCCAATTTCATTAAGGCTTT 59.577 40.000 4.45 0.00 0.00 3.51
4890 5737 6.335777 CCTCTCCAATTTCATTAAGGCTTTG 58.664 40.000 4.45 0.00 0.00 2.77
4891 5738 6.071165 CCTCTCCAATTTCATTAAGGCTTTGT 60.071 38.462 4.45 0.00 0.00 2.83
4892 5739 7.301868 TCTCCAATTTCATTAAGGCTTTGTT 57.698 32.000 4.45 0.00 0.00 2.83
4893 5740 7.378181 TCTCCAATTTCATTAAGGCTTTGTTC 58.622 34.615 4.45 0.00 0.00 3.18
4894 5741 6.155827 TCCAATTTCATTAAGGCTTTGTTCG 58.844 36.000 4.45 0.00 0.00 3.95
4895 5742 5.348451 CCAATTTCATTAAGGCTTTGTTCGG 59.652 40.000 4.45 0.00 0.00 4.30
4896 5743 5.722021 ATTTCATTAAGGCTTTGTTCGGT 57.278 34.783 4.45 0.00 0.00 4.69
4897 5744 5.523438 TTTCATTAAGGCTTTGTTCGGTT 57.477 34.783 4.45 0.00 0.00 4.44
4898 5745 6.636562 TTTCATTAAGGCTTTGTTCGGTTA 57.363 33.333 4.45 0.00 0.00 2.85
4899 5746 6.636562 TTCATTAAGGCTTTGTTCGGTTAA 57.363 33.333 4.45 0.00 0.00 2.01
4900 5747 6.249035 TCATTAAGGCTTTGTTCGGTTAAG 57.751 37.500 4.45 0.00 0.00 1.85
4901 5748 5.998981 TCATTAAGGCTTTGTTCGGTTAAGA 59.001 36.000 4.45 0.00 0.00 2.10
4902 5749 5.934935 TTAAGGCTTTGTTCGGTTAAGAG 57.065 39.130 4.45 0.00 0.00 2.85
4903 5750 2.779506 AGGCTTTGTTCGGTTAAGAGG 58.220 47.619 0.00 0.00 0.00 3.69
4904 5751 2.105993 AGGCTTTGTTCGGTTAAGAGGT 59.894 45.455 0.00 0.00 0.00 3.85
4905 5752 2.882761 GGCTTTGTTCGGTTAAGAGGTT 59.117 45.455 0.00 0.00 0.00 3.50
4906 5753 3.317149 GGCTTTGTTCGGTTAAGAGGTTT 59.683 43.478 0.00 0.00 0.00 3.27
4907 5754 4.516321 GGCTTTGTTCGGTTAAGAGGTTTA 59.484 41.667 0.00 0.00 0.00 2.01
4908 5755 5.008911 GGCTTTGTTCGGTTAAGAGGTTTAA 59.991 40.000 0.00 0.00 0.00 1.52
4909 5756 6.459985 GGCTTTGTTCGGTTAAGAGGTTTAAA 60.460 38.462 0.00 0.00 0.00 1.52
4910 5757 7.143340 GCTTTGTTCGGTTAAGAGGTTTAAAT 58.857 34.615 0.00 0.00 0.00 1.40
4911 5758 7.325338 GCTTTGTTCGGTTAAGAGGTTTAAATC 59.675 37.037 0.00 0.00 0.00 2.17
4912 5759 6.806388 TGTTCGGTTAAGAGGTTTAAATCC 57.194 37.500 0.00 0.00 0.00 3.01
4913 5760 5.706833 TGTTCGGTTAAGAGGTTTAAATCCC 59.293 40.000 0.00 0.00 0.00 3.85
4914 5761 4.847198 TCGGTTAAGAGGTTTAAATCCCC 58.153 43.478 0.00 0.00 0.00 4.81
4915 5762 3.949754 CGGTTAAGAGGTTTAAATCCCCC 59.050 47.826 0.00 0.00 0.00 5.40
4916 5763 4.324797 CGGTTAAGAGGTTTAAATCCCCCT 60.325 45.833 0.00 0.00 0.00 4.79
4917 5764 5.198965 GGTTAAGAGGTTTAAATCCCCCTC 58.801 45.833 12.53 12.53 43.14 4.30
4918 5765 5.281349 GGTTAAGAGGTTTAAATCCCCCTCA 60.281 44.000 19.38 3.13 44.85 3.86
4919 5766 6.250711 GTTAAGAGGTTTAAATCCCCCTCAA 58.749 40.000 19.38 7.79 44.85 3.02
4920 5767 5.348259 AAGAGGTTTAAATCCCCCTCAAA 57.652 39.130 19.38 0.00 44.85 2.69
4921 5768 4.673968 AGAGGTTTAAATCCCCCTCAAAC 58.326 43.478 19.38 0.00 44.85 2.93
4922 5769 3.767673 GAGGTTTAAATCCCCCTCAAACC 59.232 47.826 14.63 6.45 45.48 3.27
4923 5770 2.835764 GGTTTAAATCCCCCTCAAACCC 59.164 50.000 3.66 0.00 41.38 4.11
4924 5771 2.835764 GTTTAAATCCCCCTCAAACCCC 59.164 50.000 0.00 0.00 0.00 4.95
4925 5772 2.084121 TAAATCCCCCTCAAACCCCT 57.916 50.000 0.00 0.00 0.00 4.79
4926 5773 1.176182 AAATCCCCCTCAAACCCCTT 58.824 50.000 0.00 0.00 0.00 3.95
4927 5774 0.710588 AATCCCCCTCAAACCCCTTC 59.289 55.000 0.00 0.00 0.00 3.46
4928 5775 0.479589 ATCCCCCTCAAACCCCTTCA 60.480 55.000 0.00 0.00 0.00 3.02
4929 5776 0.703056 TCCCCCTCAAACCCCTTCAA 60.703 55.000 0.00 0.00 0.00 2.69
4930 5777 0.413434 CCCCCTCAAACCCCTTCAAT 59.587 55.000 0.00 0.00 0.00 2.57
4931 5778 1.619704 CCCCCTCAAACCCCTTCAATC 60.620 57.143 0.00 0.00 0.00 2.67
4932 5779 1.619704 CCCCTCAAACCCCTTCAATCC 60.620 57.143 0.00 0.00 0.00 3.01
4933 5780 1.077005 CCCTCAAACCCCTTCAATCCA 59.923 52.381 0.00 0.00 0.00 3.41
4934 5781 2.171003 CCTCAAACCCCTTCAATCCAC 58.829 52.381 0.00 0.00 0.00 4.02
4935 5782 2.225117 CCTCAAACCCCTTCAATCCACT 60.225 50.000 0.00 0.00 0.00 4.00
4936 5783 3.084786 CTCAAACCCCTTCAATCCACTC 58.915 50.000 0.00 0.00 0.00 3.51
4937 5784 1.812571 CAAACCCCTTCAATCCACTCG 59.187 52.381 0.00 0.00 0.00 4.18
4938 5785 0.328258 AACCCCTTCAATCCACTCGG 59.672 55.000 0.00 0.00 0.00 4.63
4953 5800 3.496131 CGGATTCACCCGCAACCG 61.496 66.667 0.00 0.00 43.25 4.44
4954 5801 2.046700 GGATTCACCCGCAACCGA 60.047 61.111 0.00 0.00 36.29 4.69
4955 5802 1.673009 GGATTCACCCGCAACCGAA 60.673 57.895 0.00 0.00 36.29 4.30
4956 5803 1.500396 GATTCACCCGCAACCGAAC 59.500 57.895 0.00 0.00 36.29 3.95
4957 5804 1.228003 ATTCACCCGCAACCGAACA 60.228 52.632 0.00 0.00 36.29 3.18
4958 5805 0.820074 ATTCACCCGCAACCGAACAA 60.820 50.000 0.00 0.00 36.29 2.83
4959 5806 1.440938 TTCACCCGCAACCGAACAAG 61.441 55.000 0.00 0.00 36.29 3.16
4960 5807 2.593436 ACCCGCAACCGAACAAGG 60.593 61.111 0.00 0.00 36.29 3.61
4961 5808 4.038080 CCCGCAACCGAACAAGGC 62.038 66.667 0.00 0.00 36.29 4.35
5036 5883 7.067129 ACACACGACATACTATCTTACATGACT 59.933 37.037 0.00 0.00 0.00 3.41
5047 5894 3.386726 TCTTACATGACTGGGGATTACGG 59.613 47.826 0.00 0.00 0.00 4.02
5108 7406 3.119708 CCCAAAATAGAAGCAGAGCACAC 60.120 47.826 0.00 0.00 0.00 3.82
5154 7452 6.092670 CACACAACATTTCAGATACTAGGGTG 59.907 42.308 0.00 0.00 0.00 4.61
5172 7470 2.161609 GGTGCAACATACAGTAGTTGGC 59.838 50.000 17.51 12.76 43.94 4.52
5174 7472 3.440173 GTGCAACATACAGTAGTTGGCAT 59.560 43.478 17.51 0.00 43.94 4.40
5180 7478 4.943705 ACATACAGTAGTTGGCATCAAAGG 59.056 41.667 0.00 0.00 34.28 3.11
5363 7673 2.357034 GCTCCACGCCGACTTTCA 60.357 61.111 0.00 0.00 0.00 2.69
5373 7683 0.366871 CCGACTTTCATGTCTTCGCG 59.633 55.000 0.00 0.00 35.00 5.87
5404 7714 5.701750 AGCTGATGACAAGATCAAGATATGC 59.298 40.000 0.00 0.00 41.93 3.14
5411 7721 4.577693 ACAAGATCAAGATATGCGCAATGT 59.422 37.500 17.11 2.50 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.273674 AGACGGAGGTAGTAATAAAAGCC 57.726 43.478 0.00 0.00 0.00 4.35
1 2 4.974888 CGAGACGGAGGTAGTAATAAAAGC 59.025 45.833 0.00 0.00 0.00 3.51
15 16 6.238416 GAATGACTTATTCACCGAGACGGAG 61.238 48.000 16.99 9.14 45.73 4.63
16 17 4.439700 GAATGACTTATTCACCGAGACGGA 60.440 45.833 16.99 0.00 45.73 4.69
17 18 3.797256 GAATGACTTATTCACCGAGACGG 59.203 47.826 8.67 8.67 43.79 4.79
18 19 3.482472 CGAATGACTTATTCACCGAGACG 59.518 47.826 0.00 0.00 44.42 4.18
19 20 3.243177 GCGAATGACTTATTCACCGAGAC 59.757 47.826 0.00 0.00 44.42 3.36
20 21 3.444916 GCGAATGACTTATTCACCGAGA 58.555 45.455 0.00 0.00 44.42 4.04
21 22 2.216488 CGCGAATGACTTATTCACCGAG 59.784 50.000 0.00 0.00 44.42 4.63
22 23 2.190161 CGCGAATGACTTATTCACCGA 58.810 47.619 0.00 0.00 44.42 4.69
23 24 1.924524 ACGCGAATGACTTATTCACCG 59.075 47.619 15.93 0.00 44.42 4.94
24 25 4.110482 ACTACGCGAATGACTTATTCACC 58.890 43.478 15.93 0.00 44.42 4.02
25 26 5.515626 AGAACTACGCGAATGACTTATTCAC 59.484 40.000 15.93 0.00 44.42 3.18
26 27 5.647589 AGAACTACGCGAATGACTTATTCA 58.352 37.500 15.93 0.00 44.42 2.57
27 28 6.360148 CCTAGAACTACGCGAATGACTTATTC 59.640 42.308 15.93 3.24 41.46 1.75
28 29 6.183360 ACCTAGAACTACGCGAATGACTTATT 60.183 38.462 15.93 0.00 0.00 1.40
29 30 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
30 31 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
31 32 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
32 33 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
33 34 3.361414 GACCTAGAACTACGCGAATGAC 58.639 50.000 15.93 0.66 0.00 3.06
34 35 2.031314 CGACCTAGAACTACGCGAATGA 59.969 50.000 15.93 0.00 0.00 2.57
35 36 2.031314 TCGACCTAGAACTACGCGAATG 59.969 50.000 15.93 4.47 0.00 2.67
36 37 2.031437 GTCGACCTAGAACTACGCGAAT 59.969 50.000 15.93 0.00 0.00 3.34
37 38 1.394917 GTCGACCTAGAACTACGCGAA 59.605 52.381 15.93 0.00 0.00 4.70
38 39 1.002366 GTCGACCTAGAACTACGCGA 58.998 55.000 15.93 0.00 0.00 5.87
39 40 0.314898 CGTCGACCTAGAACTACGCG 60.315 60.000 10.58 3.53 0.00 6.01
40 41 1.002366 TCGTCGACCTAGAACTACGC 58.998 55.000 10.58 0.00 0.00 4.42
41 42 3.940657 AATCGTCGACCTAGAACTACG 57.059 47.619 10.58 0.00 0.00 3.51
42 43 6.780127 AGTTAAATCGTCGACCTAGAACTAC 58.220 40.000 10.58 0.00 0.00 2.73
43 44 6.992063 AGTTAAATCGTCGACCTAGAACTA 57.008 37.500 10.58 0.00 0.00 2.24
44 45 5.893897 AGTTAAATCGTCGACCTAGAACT 57.106 39.130 10.58 10.32 0.00 3.01
45 46 7.638134 AGATAGTTAAATCGTCGACCTAGAAC 58.362 38.462 10.58 8.24 0.00 3.01
46 47 7.798596 AGATAGTTAAATCGTCGACCTAGAA 57.201 36.000 10.58 0.00 0.00 2.10
47 48 8.893219 TTAGATAGTTAAATCGTCGACCTAGA 57.107 34.615 10.58 1.59 0.00 2.43
111 112 9.000486 TATCACTAGATTTCTACACGGATGTAG 58.000 37.037 7.95 7.95 45.22 2.74
112 113 7.818997 ATCACTAGATTTCTACACGGATGTA 57.181 36.000 0.00 0.00 40.48 2.29
113 114 6.716934 ATCACTAGATTTCTACACGGATGT 57.283 37.500 0.00 0.00 43.30 3.06
114 115 9.776158 GTATATCACTAGATTTCTACACGGATG 57.224 37.037 0.00 0.00 35.67 3.51
115 116 9.742144 AGTATATCACTAGATTTCTACACGGAT 57.258 33.333 0.00 0.00 34.98 4.18
116 117 9.570468 AAGTATATCACTAGATTTCTACACGGA 57.430 33.333 0.00 0.00 36.04 4.69
160 161 9.071276 AGGTCATCGATTTGAGCAATTAAATAT 57.929 29.630 17.73 0.00 44.58 1.28
161 162 8.450578 AGGTCATCGATTTGAGCAATTAAATA 57.549 30.769 17.73 0.00 44.58 1.40
162 163 7.338800 AGGTCATCGATTTGAGCAATTAAAT 57.661 32.000 17.73 0.00 44.58 1.40
163 164 6.757897 AGGTCATCGATTTGAGCAATTAAA 57.242 33.333 17.73 0.00 44.58 1.52
164 165 7.272244 TCTAGGTCATCGATTTGAGCAATTAA 58.728 34.615 17.73 0.00 44.58 1.40
165 166 6.816136 TCTAGGTCATCGATTTGAGCAATTA 58.184 36.000 17.73 4.05 44.58 1.40
166 167 5.674525 TCTAGGTCATCGATTTGAGCAATT 58.325 37.500 17.73 3.20 44.58 2.32
167 168 5.282055 TCTAGGTCATCGATTTGAGCAAT 57.718 39.130 17.73 3.80 44.58 3.56
168 169 4.736126 TCTAGGTCATCGATTTGAGCAA 57.264 40.909 17.73 3.36 44.58 3.91
169 170 4.160439 AGTTCTAGGTCATCGATTTGAGCA 59.840 41.667 17.73 5.86 44.58 4.26
170 171 4.688021 AGTTCTAGGTCATCGATTTGAGC 58.312 43.478 9.64 9.64 42.94 4.26
171 172 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
172 173 5.356190 ACGTAGTTCTAGGTCATCGATTTGA 59.644 40.000 0.00 0.00 37.78 2.69
173 174 5.455849 CACGTAGTTCTAGGTCATCGATTTG 59.544 44.000 0.00 0.00 41.61 2.32
174 175 5.450137 CCACGTAGTTCTAGGTCATCGATTT 60.450 44.000 0.00 0.00 41.61 2.17
175 176 4.036498 CCACGTAGTTCTAGGTCATCGATT 59.964 45.833 0.00 0.00 41.61 3.34
176 177 3.564644 CCACGTAGTTCTAGGTCATCGAT 59.435 47.826 0.00 0.00 41.61 3.59
177 178 2.941064 CCACGTAGTTCTAGGTCATCGA 59.059 50.000 0.00 0.00 41.61 3.59
178 179 2.941064 TCCACGTAGTTCTAGGTCATCG 59.059 50.000 0.00 0.00 41.61 3.84
179 180 4.579340 TCATCCACGTAGTTCTAGGTCATC 59.421 45.833 0.00 0.00 41.61 2.92
180 181 4.338682 GTCATCCACGTAGTTCTAGGTCAT 59.661 45.833 0.00 0.00 41.61 3.06
181 182 3.693085 GTCATCCACGTAGTTCTAGGTCA 59.307 47.826 0.00 0.00 41.61 4.02
182 183 3.946558 AGTCATCCACGTAGTTCTAGGTC 59.053 47.826 0.00 0.00 41.61 3.85
183 184 3.965694 AGTCATCCACGTAGTTCTAGGT 58.034 45.455 0.00 0.20 41.61 3.08
184 185 4.985538 AAGTCATCCACGTAGTTCTAGG 57.014 45.455 0.00 0.00 41.61 3.02
185 186 7.644551 GTGAATAAGTCATCCACGTAGTTCTAG 59.355 40.741 0.00 0.00 37.29 2.43
186 187 7.415989 GGTGAATAAGTCATCCACGTAGTTCTA 60.416 40.741 0.00 0.00 37.29 2.10
187 188 6.331061 GTGAATAAGTCATCCACGTAGTTCT 58.669 40.000 0.00 0.00 37.29 3.01
188 189 5.519206 GGTGAATAAGTCATCCACGTAGTTC 59.481 44.000 0.00 0.00 37.29 3.01
189 190 5.187186 AGGTGAATAAGTCATCCACGTAGTT 59.813 40.000 0.00 0.00 35.65 2.24
190 191 4.710375 AGGTGAATAAGTCATCCACGTAGT 59.290 41.667 0.00 0.00 38.23 2.73
191 192 5.263968 AGGTGAATAAGTCATCCACGTAG 57.736 43.478 0.00 0.00 38.23 3.51
192 193 6.039047 GTCTAGGTGAATAAGTCATCCACGTA 59.961 42.308 0.00 0.00 38.23 3.57
193 194 4.954202 TCTAGGTGAATAAGTCATCCACGT 59.046 41.667 0.00 0.00 38.23 4.49
194 195 5.282510 GTCTAGGTGAATAAGTCATCCACG 58.717 45.833 0.00 0.00 38.23 4.94
195 196 5.282510 CGTCTAGGTGAATAAGTCATCCAC 58.717 45.833 0.00 0.00 38.23 4.02
196 197 4.341235 CCGTCTAGGTGAATAAGTCATCCA 59.659 45.833 0.00 0.00 38.23 3.41
197 198 4.583489 TCCGTCTAGGTGAATAAGTCATCC 59.417 45.833 0.00 0.00 38.23 3.51
198 199 5.278561 CCTCCGTCTAGGTGAATAAGTCATC 60.279 48.000 0.00 0.00 38.90 2.92
199 200 4.585162 CCTCCGTCTAGGTGAATAAGTCAT 59.415 45.833 0.00 0.00 38.90 3.06
200 201 3.952323 CCTCCGTCTAGGTGAATAAGTCA 59.048 47.826 0.00 0.00 41.99 3.41
201 202 4.571372 CCTCCGTCTAGGTGAATAAGTC 57.429 50.000 0.00 0.00 41.99 3.01
211 212 7.003402 ACTAATACTACTACCTCCGTCTAGG 57.997 44.000 0.00 0.00 42.82 3.02
212 213 7.095271 GCAACTAATACTACTACCTCCGTCTAG 60.095 44.444 0.00 0.00 0.00 2.43
213 214 6.708054 GCAACTAATACTACTACCTCCGTCTA 59.292 42.308 0.00 0.00 0.00 2.59
214 215 5.530543 GCAACTAATACTACTACCTCCGTCT 59.469 44.000 0.00 0.00 0.00 4.18
215 216 5.530543 AGCAACTAATACTACTACCTCCGTC 59.469 44.000 0.00 0.00 0.00 4.79
216 217 5.444176 AGCAACTAATACTACTACCTCCGT 58.556 41.667 0.00 0.00 0.00 4.69
217 218 5.530171 TGAGCAACTAATACTACTACCTCCG 59.470 44.000 0.00 0.00 0.00 4.63
218 219 6.956202 TGAGCAACTAATACTACTACCTCC 57.044 41.667 0.00 0.00 0.00 4.30
219 220 8.398878 AGATGAGCAACTAATACTACTACCTC 57.601 38.462 0.00 0.00 0.00 3.85
225 226 9.557338 CGGTAATAGATGAGCAACTAATACTAC 57.443 37.037 10.72 3.78 30.42 2.73
245 246 2.574369 TGAATCCTGACCCAACGGTAAT 59.426 45.455 0.00 0.00 44.88 1.89
251 252 1.200020 CGCTTTGAATCCTGACCCAAC 59.800 52.381 0.00 0.00 0.00 3.77
293 850 4.450976 ACGATAGCAATAATTGGTGCAGA 58.549 39.130 15.16 5.48 43.42 4.26
311 868 5.192927 TCCAAGCAGGATTATTCAAACGAT 58.807 37.500 0.00 0.00 43.07 3.73
313 870 4.963276 TCCAAGCAGGATTATTCAAACG 57.037 40.909 0.00 0.00 43.07 3.60
324 881 1.072331 GGTCTGAAAGTCCAAGCAGGA 59.928 52.381 0.00 0.00 46.75 3.86
325 882 1.528129 GGTCTGAAAGTCCAAGCAGG 58.472 55.000 0.00 0.00 42.08 4.85
360 917 4.271687 GAGTGTTGTTTCTTGTAAGCACG 58.728 43.478 0.00 0.00 0.00 5.34
375 932 4.024048 GCGGATAATAATGGTGGAGTGTTG 60.024 45.833 0.00 0.00 0.00 3.33
380 937 6.313905 GTGAATAGCGGATAATAATGGTGGAG 59.686 42.308 0.00 0.00 0.00 3.86
396 953 3.740832 TGTTCAGTTCAGTGTGAATAGCG 59.259 43.478 0.00 0.00 38.79 4.26
420 977 5.998363 AGGATAAAAGAAAAGCTCGACTGTT 59.002 36.000 0.00 0.00 0.00 3.16
429 986 8.583810 AACCGTAAAAAGGATAAAAGAAAAGC 57.416 30.769 0.00 0.00 0.00 3.51
448 1005 3.833650 TCAACTGTCCCATTCTAACCGTA 59.166 43.478 0.00 0.00 0.00 4.02
582 1139 6.002062 ACAACTAGAAGGCAAATCTTTTCG 57.998 37.500 0.00 0.00 0.00 3.46
597 1154 1.819288 CCTTGAGCTCGGACAACTAGA 59.181 52.381 9.64 0.00 0.00 2.43
634 1191 6.769512 TGGGAGAAATATAGGTGATGCTTAC 58.230 40.000 0.00 0.00 0.00 2.34
690 1247 9.102757 GAAAGAGATTGAATCAGCAGTATGTTA 57.897 33.333 8.03 0.00 39.31 2.41
861 1476 4.415881 AACGATGACCCTTACATGCATA 57.584 40.909 0.00 0.00 0.00 3.14
919 1696 5.536161 ACAGTACTCCAAGATTGCAACAAAT 59.464 36.000 0.00 0.00 0.00 2.32
923 1700 6.204882 AGTTTACAGTACTCCAAGATTGCAAC 59.795 38.462 0.00 0.00 0.00 4.17
931 1708 7.668492 AGGTTAGAAGTTTACAGTACTCCAAG 58.332 38.462 0.00 0.00 0.00 3.61
948 1725 2.119495 GAGAGGGCATGGAGGTTAGAA 58.881 52.381 0.00 0.00 0.00 2.10
979 1776 4.518970 TCCTGGAGAAACAGTTGCATTAAC 59.481 41.667 0.00 0.00 39.65 2.01
985 1782 4.072131 TGTTATCCTGGAGAAACAGTTGC 58.928 43.478 18.41 2.05 36.75 4.17
1012 1809 3.327757 ACCATCTCTGCTACTGGAACAAA 59.672 43.478 0.00 0.00 38.70 2.83
1090 1887 1.341285 TGCTTGAGATGGGTCATTGGG 60.341 52.381 0.00 0.00 0.00 4.12
1179 1976 2.801111 GTTGTCGTGGAAGAAAGTCTCC 59.199 50.000 0.00 0.00 0.00 3.71
1215 2012 0.619255 TCGGTCTGGATTGGCCCTTA 60.619 55.000 0.00 0.00 34.97 2.69
1269 2066 3.747576 TCCCTACCCCACCCAAATATA 57.252 47.619 0.00 0.00 0.00 0.86
1330 2127 1.067283 ACAGAGACTTGCGATGGTCAG 60.067 52.381 0.00 0.00 35.18 3.51
1344 2141 6.614657 TGATGATACCTGAGGAATACAGAGA 58.385 40.000 4.99 0.00 37.54 3.10
1350 2147 7.018769 TCATCCTTGATGATACCTGAGGAATA 58.981 38.462 4.99 0.00 43.11 1.75
1394 2191 9.065798 AGGCACGGTTTTTAATAAGTAGTAAAA 57.934 29.630 0.81 0.81 34.97 1.52
1395 2192 8.505625 CAGGCACGGTTTTTAATAAGTAGTAAA 58.494 33.333 0.00 0.00 0.00 2.01
1396 2193 7.877097 TCAGGCACGGTTTTTAATAAGTAGTAA 59.123 33.333 0.00 0.00 0.00 2.24
1397 2194 7.331687 GTCAGGCACGGTTTTTAATAAGTAGTA 59.668 37.037 0.00 0.00 0.00 1.82
1401 2198 4.822896 TGTCAGGCACGGTTTTTAATAAGT 59.177 37.500 0.00 0.00 0.00 2.24
1402 2199 5.365403 TGTCAGGCACGGTTTTTAATAAG 57.635 39.130 0.00 0.00 0.00 1.73
1403 2200 5.968528 ATGTCAGGCACGGTTTTTAATAA 57.031 34.783 0.00 0.00 0.00 1.40
1404 2201 5.473846 TCAATGTCAGGCACGGTTTTTAATA 59.526 36.000 0.00 0.00 0.00 0.98
1405 2202 4.279671 TCAATGTCAGGCACGGTTTTTAAT 59.720 37.500 0.00 0.00 0.00 1.40
1406 2203 3.632604 TCAATGTCAGGCACGGTTTTTAA 59.367 39.130 0.00 0.00 0.00 1.52
1407 2204 3.215151 TCAATGTCAGGCACGGTTTTTA 58.785 40.909 0.00 0.00 0.00 1.52
1408 2205 2.028130 TCAATGTCAGGCACGGTTTTT 58.972 42.857 0.00 0.00 0.00 1.94
1409 2206 1.686355 TCAATGTCAGGCACGGTTTT 58.314 45.000 0.00 0.00 0.00 2.43
1414 2211 2.587956 CAACATTCAATGTCAGGCACG 58.412 47.619 2.74 0.00 44.07 5.34
1441 2238 4.390297 GCTTCGAATAGCCAATGTCCTATC 59.610 45.833 0.00 0.00 35.06 2.08
1473 2270 1.302033 GCCCATACTGCGGATCCAG 60.302 63.158 13.41 4.94 38.78 3.86
1502 2299 2.630098 CCACAACAGAGTCAAGAGGAGA 59.370 50.000 0.00 0.00 0.00 3.71
1573 2370 3.724374 TGGAGTCTGAAACCAACTAACG 58.276 45.455 2.31 0.00 0.00 3.18
1662 2459 6.262273 GTGAACCTATCAAAAGAGAAACCACA 59.738 38.462 0.00 0.00 40.50 4.17
1802 2599 8.352942 GCAAGCTTTTACTATAGGTTTGCATAT 58.647 33.333 16.76 0.00 31.97 1.78
1803 2600 7.338196 TGCAAGCTTTTACTATAGGTTTGCATA 59.662 33.333 18.96 5.38 34.37 3.14
1804 2601 6.152661 TGCAAGCTTTTACTATAGGTTTGCAT 59.847 34.615 18.96 3.66 34.37 3.96
1817 2614 6.747280 CACCTACATTATGTGCAAGCTTTTAC 59.253 38.462 8.26 0.00 0.00 2.01
1838 2635 1.339097 ACTCTTAGTCCAACGCACCT 58.661 50.000 0.00 0.00 0.00 4.00
1840 2637 1.798813 CCAACTCTTAGTCCAACGCAC 59.201 52.381 0.00 0.00 0.00 5.34
1841 2638 1.414919 ACCAACTCTTAGTCCAACGCA 59.585 47.619 0.00 0.00 0.00 5.24
1843 2640 6.796705 AAATTACCAACTCTTAGTCCAACG 57.203 37.500 0.00 0.00 0.00 4.10
1879 2680 6.222038 TGCGACAAGAACTCTATAAGGAAT 57.778 37.500 0.00 0.00 0.00 3.01
1909 2710 1.609208 CCCCCATGAATCCGACAATC 58.391 55.000 0.00 0.00 0.00 2.67
2014 2815 4.101274 ACTGATCTCCAGACAGATTCCATG 59.899 45.833 0.00 0.00 45.78 3.66
2078 2879 8.420374 TGTTCTGACCAAGATATAAAATCGAC 57.580 34.615 0.00 0.00 33.93 4.20
2252 3053 6.072112 TGAGCTCCAAACATCTAAAAACAC 57.928 37.500 12.15 0.00 0.00 3.32
2260 3061 4.401022 TGACAAATGAGCTCCAAACATCT 58.599 39.130 12.15 0.00 0.00 2.90
2281 3082 3.243501 CCACCCGCTTCCAAATGAATATG 60.244 47.826 0.00 0.00 31.06 1.78
2341 3143 2.639839 GCCTATGCTAATCCCTTCCTGA 59.360 50.000 0.00 0.00 33.53 3.86
2380 3182 9.737427 CAGTATACTTTAGATAACTCACACAGG 57.263 37.037 1.56 0.00 0.00 4.00
2721 3529 0.839946 GGTCCATATCACTGTGCCCT 59.160 55.000 2.12 0.00 0.00 5.19
2722 3530 0.546122 TGGTCCATATCACTGTGCCC 59.454 55.000 2.12 0.00 0.00 5.36
2726 3534 5.282055 CAGTGTATGGTCCATATCACTGT 57.718 43.478 34.07 20.63 42.62 3.55
2731 3539 6.112734 TGACAAACAGTGTATGGTCCATATC 58.887 40.000 14.78 10.93 41.96 1.63
2732 3540 6.061022 TGACAAACAGTGTATGGTCCATAT 57.939 37.500 14.78 0.00 41.96 1.78
2734 3542 4.365514 TGACAAACAGTGTATGGTCCAT 57.634 40.909 9.88 9.88 41.96 3.41
2761 3569 7.286546 TCACCTGATGACCAAGTCAAAATTTTA 59.713 33.333 2.44 0.00 45.96 1.52
2786 3599 3.507233 TGATTCCCTGTTCAATGTGCTTC 59.493 43.478 0.00 0.00 0.00 3.86
2843 3656 3.944015 TGAAACCTTTTGCAACAAATGGG 59.056 39.130 21.84 15.71 0.00 4.00
3038 3851 5.779241 ACCATCTCCTTGTTTCCATCTAA 57.221 39.130 0.00 0.00 0.00 2.10
3281 4096 4.461198 CCAACAAGGTAAGAAGAACCACT 58.539 43.478 0.00 0.00 39.64 4.00
3326 4141 2.104111 CCCTAGGATTGCATTCGGTGTA 59.896 50.000 11.48 0.00 0.00 2.90
3386 4201 2.031807 CCAGATGAGAATTGCTGCTTCG 59.968 50.000 0.00 0.00 0.00 3.79
3533 4349 4.520111 TCTCCACAAAAAGACATGGACATG 59.480 41.667 10.57 10.57 44.15 3.21
3534 4350 4.520492 GTCTCCACAAAAAGACATGGACAT 59.480 41.667 0.00 0.00 41.26 3.06
3584 4401 9.071276 CAAATGAGATTGCTACCTGGTAATATT 57.929 33.333 8.11 0.00 0.00 1.28
3675 4492 4.157246 ACTGGCTGATGTTCCGGTATATA 58.843 43.478 0.00 0.00 40.02 0.86
3682 4499 1.138859 TGGATACTGGCTGATGTTCCG 59.861 52.381 0.00 0.00 37.61 4.30
3720 4537 1.767036 CCTCACAATCACCACCCCA 59.233 57.895 0.00 0.00 0.00 4.96
3839 4656 9.979270 CTGAAGTTACTGAATTCATGTGTATTC 57.021 33.333 8.96 9.75 32.82 1.75
3943 4765 5.405935 AAACTGATTTTAGGCAATCCCAC 57.594 39.130 0.00 0.00 32.86 4.61
3965 4787 2.083774 GCGACATTTCCACAATCAGGA 58.916 47.619 0.00 0.00 0.00 3.86
3967 4789 1.464608 ACGCGACATTTCCACAATCAG 59.535 47.619 15.93 0.00 0.00 2.90
4200 5023 5.244626 AGCTGCCAAGTGAAACAAGATTATT 59.755 36.000 0.00 0.00 41.43 1.40
4217 5040 4.039004 ACAAAACAACATTATCAGCTGCCA 59.961 37.500 9.47 0.00 0.00 4.92
4537 5379 7.068716 GGGAGTAGTATTTAGTAAACCGGAGAA 59.931 40.741 9.46 0.00 0.00 2.87
4564 5410 6.644347 AGAACATCTTATAGTGGTGAACAGG 58.356 40.000 0.00 0.00 0.00 4.00
4566 5412 8.038944 GGTTAGAACATCTTATAGTGGTGAACA 58.961 37.037 0.00 0.00 0.00 3.18
4595 5441 8.367911 ACGGCTATATACATCTGATTCAGAAAA 58.632 33.333 19.73 9.03 44.04 2.29
4604 5450 9.110502 CACTAATAGACGGCTATATACATCTGA 57.889 37.037 12.19 0.00 36.31 3.27
4636 5482 7.338703 ACTGCATATGAACTGAAATGAGTGAAT 59.661 33.333 6.97 0.00 0.00 2.57
4652 5498 9.399797 GGATATTTCAATATGGACTGCATATGA 57.600 33.333 6.97 2.40 31.96 2.15
4695 5541 3.383698 TCTTCTACTCCCTCCGTTCAT 57.616 47.619 0.00 0.00 0.00 2.57
4719 5565 5.326069 TCAGTAGAGGAGCACTTCTAAACT 58.674 41.667 4.60 0.00 36.68 2.66
4745 5591 6.202188 TGAGTTCCAGAATTTACTTCGTTCAC 59.798 38.462 0.00 0.00 38.98 3.18
4761 5607 3.204526 GAAGATCTGCCATGAGTTCCAG 58.795 50.000 0.00 0.00 0.00 3.86
4775 5622 9.821240 ATATCTGTACATACTTGAGGAAGATCT 57.179 33.333 0.00 0.00 32.98 2.75
4803 5650 5.018539 TCCCACGTTGATCCTTTATGTAG 57.981 43.478 0.00 0.00 0.00 2.74
4804 5651 5.365605 AGATCCCACGTTGATCCTTTATGTA 59.634 40.000 17.17 0.00 39.56 2.29
4830 5677 8.721019 TTTTGATCAAGAAAAAGAAATGCACT 57.279 26.923 8.41 0.00 0.00 4.40
4873 5720 6.096673 ACCGAACAAAGCCTTAATGAAATT 57.903 33.333 0.00 0.00 41.28 1.82
4881 5728 4.202388 ACCTCTTAACCGAACAAAGCCTTA 60.202 41.667 0.00 0.00 0.00 2.69
4882 5729 3.146847 CCTCTTAACCGAACAAAGCCTT 58.853 45.455 0.00 0.00 0.00 4.35
4883 5730 2.105993 ACCTCTTAACCGAACAAAGCCT 59.894 45.455 0.00 0.00 0.00 4.58
4884 5731 2.501261 ACCTCTTAACCGAACAAAGCC 58.499 47.619 0.00 0.00 0.00 4.35
4885 5732 4.563337 AAACCTCTTAACCGAACAAAGC 57.437 40.909 0.00 0.00 0.00 3.51
4886 5733 7.806487 GGATTTAAACCTCTTAACCGAACAAAG 59.194 37.037 0.00 0.00 0.00 2.77
4887 5734 7.255555 GGGATTTAAACCTCTTAACCGAACAAA 60.256 37.037 0.00 0.00 0.00 2.83
4888 5735 6.207221 GGGATTTAAACCTCTTAACCGAACAA 59.793 38.462 0.00 0.00 0.00 2.83
4889 5736 5.706833 GGGATTTAAACCTCTTAACCGAACA 59.293 40.000 0.00 0.00 0.00 3.18
4890 5737 5.124457 GGGGATTTAAACCTCTTAACCGAAC 59.876 44.000 0.00 0.00 0.00 3.95
4891 5738 5.255687 GGGGATTTAAACCTCTTAACCGAA 58.744 41.667 0.00 0.00 0.00 4.30
4892 5739 4.324486 GGGGGATTTAAACCTCTTAACCGA 60.324 45.833 6.64 0.00 0.00 4.69
4893 5740 3.949754 GGGGGATTTAAACCTCTTAACCG 59.050 47.826 6.64 0.00 0.00 4.44
4894 5741 5.198965 GAGGGGGATTTAAACCTCTTAACC 58.801 45.833 12.97 3.52 44.74 2.85
4900 5747 5.359484 GGGTTTGAGGGGGATTTAAACCTC 61.359 50.000 13.24 13.24 45.86 3.85
4901 5748 3.503412 GGGTTTGAGGGGGATTTAAACCT 60.503 47.826 14.54 0.00 45.86 3.50
4902 5749 2.835764 GGGTTTGAGGGGGATTTAAACC 59.164 50.000 0.00 0.00 45.86 3.27
4903 5750 2.835764 GGGGTTTGAGGGGGATTTAAAC 59.164 50.000 0.00 0.00 0.00 2.01
4904 5751 2.730816 AGGGGTTTGAGGGGGATTTAAA 59.269 45.455 0.00 0.00 0.00 1.52
4905 5752 2.374179 AGGGGTTTGAGGGGGATTTAA 58.626 47.619 0.00 0.00 0.00 1.52
4906 5753 2.084121 AGGGGTTTGAGGGGGATTTA 57.916 50.000 0.00 0.00 0.00 1.40
4907 5754 1.078823 GAAGGGGTTTGAGGGGGATTT 59.921 52.381 0.00 0.00 0.00 2.17
4908 5755 0.710588 GAAGGGGTTTGAGGGGGATT 59.289 55.000 0.00 0.00 0.00 3.01
4909 5756 0.479589 TGAAGGGGTTTGAGGGGGAT 60.480 55.000 0.00 0.00 0.00 3.85
4910 5757 0.703056 TTGAAGGGGTTTGAGGGGGA 60.703 55.000 0.00 0.00 0.00 4.81
4911 5758 0.413434 ATTGAAGGGGTTTGAGGGGG 59.587 55.000 0.00 0.00 0.00 5.40
4912 5759 1.619704 GGATTGAAGGGGTTTGAGGGG 60.620 57.143 0.00 0.00 0.00 4.79
4913 5760 1.077005 TGGATTGAAGGGGTTTGAGGG 59.923 52.381 0.00 0.00 0.00 4.30
4914 5761 2.171003 GTGGATTGAAGGGGTTTGAGG 58.829 52.381 0.00 0.00 0.00 3.86
4915 5762 3.084786 GAGTGGATTGAAGGGGTTTGAG 58.915 50.000 0.00 0.00 0.00 3.02
4916 5763 2.552155 CGAGTGGATTGAAGGGGTTTGA 60.552 50.000 0.00 0.00 0.00 2.69
4917 5764 1.812571 CGAGTGGATTGAAGGGGTTTG 59.187 52.381 0.00 0.00 0.00 2.93
4918 5765 1.271926 CCGAGTGGATTGAAGGGGTTT 60.272 52.381 0.00 0.00 37.49 3.27
4919 5766 0.328258 CCGAGTGGATTGAAGGGGTT 59.672 55.000 0.00 0.00 37.49 4.11
4920 5767 0.546747 TCCGAGTGGATTGAAGGGGT 60.547 55.000 0.00 0.00 40.17 4.95
4921 5768 2.296920 TCCGAGTGGATTGAAGGGG 58.703 57.895 0.00 0.00 40.17 4.79
4937 5784 1.673009 TTCGGTTGCGGGTGAATCC 60.673 57.895 0.00 0.00 0.00 3.01
4938 5785 1.231958 TGTTCGGTTGCGGGTGAATC 61.232 55.000 0.00 0.00 0.00 2.52
4939 5786 0.820074 TTGTTCGGTTGCGGGTGAAT 60.820 50.000 0.00 0.00 0.00 2.57
4940 5787 1.440938 CTTGTTCGGTTGCGGGTGAA 61.441 55.000 0.00 0.00 0.00 3.18
4941 5788 1.890041 CTTGTTCGGTTGCGGGTGA 60.890 57.895 0.00 0.00 0.00 4.02
4942 5789 2.637025 CTTGTTCGGTTGCGGGTG 59.363 61.111 0.00 0.00 0.00 4.61
4943 5790 2.593436 CCTTGTTCGGTTGCGGGT 60.593 61.111 0.00 0.00 0.00 5.28
4944 5791 4.038080 GCCTTGTTCGGTTGCGGG 62.038 66.667 0.00 0.00 0.00 6.13
4945 5792 4.038080 GGCCTTGTTCGGTTGCGG 62.038 66.667 0.00 0.00 0.00 5.69
4946 5793 1.231958 TTAGGCCTTGTTCGGTTGCG 61.232 55.000 12.58 0.00 0.00 4.85
4947 5794 0.521735 CTTAGGCCTTGTTCGGTTGC 59.478 55.000 12.58 0.00 0.00 4.17
4948 5795 2.076863 CTCTTAGGCCTTGTTCGGTTG 58.923 52.381 12.58 0.00 0.00 3.77
4949 5796 1.975680 TCTCTTAGGCCTTGTTCGGTT 59.024 47.619 12.58 0.00 0.00 4.44
4950 5797 1.640917 TCTCTTAGGCCTTGTTCGGT 58.359 50.000 12.58 0.00 0.00 4.69
4951 5798 2.742589 GTTTCTCTTAGGCCTTGTTCGG 59.257 50.000 12.58 0.00 0.00 4.30
4952 5799 2.742589 GGTTTCTCTTAGGCCTTGTTCG 59.257 50.000 12.58 0.00 0.00 3.95
4953 5800 3.751518 TGGTTTCTCTTAGGCCTTGTTC 58.248 45.455 12.58 0.00 0.00 3.18
4954 5801 3.876309 TGGTTTCTCTTAGGCCTTGTT 57.124 42.857 12.58 0.00 0.00 2.83
4955 5802 3.498661 CCTTGGTTTCTCTTAGGCCTTGT 60.499 47.826 12.58 0.00 0.00 3.16
4956 5803 3.084786 CCTTGGTTTCTCTTAGGCCTTG 58.915 50.000 12.58 4.55 0.00 3.61
4957 5804 2.716969 ACCTTGGTTTCTCTTAGGCCTT 59.283 45.455 12.58 0.00 0.00 4.35
4958 5805 2.349445 ACCTTGGTTTCTCTTAGGCCT 58.651 47.619 11.78 11.78 0.00 5.19
4959 5806 2.881111 ACCTTGGTTTCTCTTAGGCC 57.119 50.000 0.00 0.00 0.00 5.19
4960 5807 3.502595 GTGAACCTTGGTTTCTCTTAGGC 59.497 47.826 6.49 0.00 0.00 3.93
4961 5808 4.714632 TGTGAACCTTGGTTTCTCTTAGG 58.285 43.478 6.49 0.00 0.00 2.69
5036 5883 2.585698 GGTTCGCCGTAATCCCCA 59.414 61.111 0.00 0.00 0.00 4.96
5095 7393 1.849976 GCTGGTGTGTGCTCTGCTTC 61.850 60.000 0.00 0.00 0.00 3.86
5154 7452 3.689161 TGATGCCAACTACTGTATGTTGC 59.311 43.478 17.31 14.46 41.34 4.17
5172 7470 7.918536 AGCTATGATATGTTAGCCTTTGATG 57.081 36.000 9.02 0.00 41.40 3.07
5174 7472 9.494271 CTTTAGCTATGATATGTTAGCCTTTGA 57.506 33.333 0.00 0.00 41.40 2.69
5180 7478 8.539770 TCTTGCTTTAGCTATGATATGTTAGC 57.460 34.615 3.10 5.68 42.66 3.09
5225 7523 1.493311 CTTCTTCGTCGTTGCTGCC 59.507 57.895 0.00 0.00 0.00 4.85
5348 7658 0.669318 GACATGAAAGTCGGCGTGGA 60.669 55.000 6.85 0.00 0.00 4.02
5363 7673 1.080995 GCTGAGCTTCGCGAAGACAT 61.081 55.000 43.98 30.58 40.79 3.06
5373 7683 2.969990 TCTTGTCATCAGCTGAGCTTC 58.030 47.619 22.96 12.37 36.40 3.86
5404 7714 1.984990 CGGTTTGGAATGAACATTGCG 59.015 47.619 12.70 0.00 41.31 4.85
5489 7799 7.992033 ACGTCAACTCAGGTAGTAGTATATCTT 59.008 37.037 0.00 0.00 37.50 2.40
5493 7803 6.881065 ACAACGTCAACTCAGGTAGTAGTATA 59.119 38.462 0.00 0.00 37.50 1.47
5494 7804 5.709164 ACAACGTCAACTCAGGTAGTAGTAT 59.291 40.000 0.00 0.00 37.50 2.12
5495 7805 5.065914 ACAACGTCAACTCAGGTAGTAGTA 58.934 41.667 0.00 0.00 37.50 1.82
5496 7806 3.887716 ACAACGTCAACTCAGGTAGTAGT 59.112 43.478 0.00 0.00 37.50 2.73
5497 7807 4.023450 TGACAACGTCAACTCAGGTAGTAG 60.023 45.833 0.00 0.00 39.78 2.57
5508 7818 2.535984 CTCAGTCTGTGACAACGTCAAC 59.464 50.000 0.00 0.00 44.49 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.