Multiple sequence alignment - TraesCS5B01G227400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G227400 chr5B 100.000 3169 0 0 1 3169 403857624 403854456 0.000000e+00 5853.0
1 TraesCS5B01G227400 chr5D 92.299 1844 96 24 10 1822 347275251 347277079 0.000000e+00 2577.0
2 TraesCS5B01G227400 chr5D 94.153 496 29 0 1800 2295 347277119 347277614 0.000000e+00 756.0
3 TraesCS5B01G227400 chr5D 93.361 241 14 2 2895 3134 347348742 347348981 3.890000e-94 355.0
4 TraesCS5B01G227400 chr5D 92.017 238 14 4 2668 2902 347280002 347280237 2.360000e-86 329.0
5 TraesCS5B01G227400 chr5D 92.357 157 11 1 2515 2670 347279239 347279395 4.110000e-54 222.0
6 TraesCS5B01G227400 chr5D 92.157 102 6 2 2296 2395 347279089 347279190 3.290000e-30 143.0
7 TraesCS5B01G227400 chr5D 85.000 140 19 2 2840 2978 347278926 347279064 1.190000e-29 141.0
8 TraesCS5B01G227400 chr5D 81.609 87 11 2 2550 2632 352940487 352940572 2.040000e-07 67.6
9 TraesCS5B01G227400 chr5D 89.130 46 3 2 1770 1814 347277065 347277109 4.420000e-04 56.5
10 TraesCS5B01G227400 chr5A 91.807 1843 84 30 10 1822 444597620 444595815 0.000000e+00 2505.0
11 TraesCS5B01G227400 chr5A 95.968 496 20 0 1800 2295 444595776 444595281 0.000000e+00 806.0
12 TraesCS5B01G227400 chr5A 91.083 157 10 3 2515 2670 444593654 444593501 3.200000e-50 209.0
13 TraesCS5B01G227400 chr5A 94.286 105 4 2 2296 2398 444593804 444593700 3.270000e-35 159.0
14 TraesCS5B01G227400 chr5A 86.429 140 18 1 2840 2978 444593968 444593829 5.470000e-33 152.0
15 TraesCS5B01G227400 chr5A 100.000 30 0 0 1785 1814 444595814 444595785 4.420000e-04 56.5
16 TraesCS5B01G227400 chr7B 90.323 124 7 3 2396 2514 244298691 244298814 1.180000e-34 158.0
17 TraesCS5B01G227400 chrUn 84.536 97 11 3 2550 2643 28672501 28672406 3.370000e-15 93.5
18 TraesCS5B01G227400 chrUn 77.570 107 20 2 2550 2652 89711959 89711853 9.490000e-06 62.1
19 TraesCS5B01G227400 chr4B 85.714 84 10 2 2550 2632 670890569 670890651 1.570000e-13 87.9
20 TraesCS5B01G227400 chr2B 80.374 107 17 3 2549 2652 578220571 578220466 9.420000e-11 78.7
21 TraesCS5B01G227400 chr3A 82.609 92 8 7 2396 2485 208384470 208384385 1.220000e-09 75.0
22 TraesCS5B01G227400 chr1D 79.381 97 19 1 2573 2669 298572999 298572904 2.040000e-07 67.6
23 TraesCS5B01G227400 chr1B 78.095 105 21 2 2566 2669 401623444 401623341 7.340000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G227400 chr5B 403854456 403857624 3168 True 5853.000000 5853 100.000000 1 3169 1 chr5B.!!$R1 3168
1 TraesCS5B01G227400 chr5D 347275251 347280237 4986 False 603.500000 2577 91.016143 10 2978 7 chr5D.!!$F3 2968
2 TraesCS5B01G227400 chr5A 444593501 444597620 4119 True 647.916667 2505 93.262167 10 2978 6 chr5A.!!$R1 2968

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 543 0.039527 GTTGCCATCGAAAAGCCGTT 60.040 50.0 0.00 0.0 0.00 4.44 F
1154 1178 0.675837 TGCAATGAGGAGCTCAGCAC 60.676 55.0 17.19 0.0 44.08 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 1990 0.102663 TTGTACTGACGTTCACCGCA 59.897 50.0 0.00 0.0 41.42 5.69 R
2587 4172 0.039472 TGGTGGCATAGCATGGTTGT 59.961 50.0 1.12 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 201 0.464735 TGGGTTTTGACACCAGACCG 60.465 55.000 0.00 0.00 38.79 4.79
230 236 4.212214 GGCTCCGAATAGATTTGATGACAC 59.788 45.833 0.00 0.00 0.00 3.67
288 294 7.547019 TCATGTTCAGATTCACTCAATGTAGTC 59.453 37.037 0.00 0.00 0.00 2.59
328 334 8.712363 GGCATAAATCAGAAAAGAAAAGGAAAC 58.288 33.333 0.00 0.00 0.00 2.78
332 338 8.932945 AAATCAGAAAAGAAAAGGAAACTGAC 57.067 30.769 0.00 0.00 42.68 3.51
341 347 6.495706 AGAAAAGGAAACTGACGAATGTTTC 58.504 36.000 16.93 16.93 46.47 2.78
431 438 5.359576 TCGATGATGGAAATTTAAAGGGTGG 59.640 40.000 0.00 0.00 0.00 4.61
439 446 8.584063 TGGAAATTTAAAGGGTGGTAGAATAC 57.416 34.615 0.00 0.00 42.04 1.89
536 543 0.039527 GTTGCCATCGAAAAGCCGTT 60.040 50.000 0.00 0.00 0.00 4.44
631 645 1.838913 GTGCACGCATTTGACAACTT 58.161 45.000 0.00 0.00 0.00 2.66
632 646 1.518102 GTGCACGCATTTGACAACTTG 59.482 47.619 0.00 0.00 0.00 3.16
722 740 0.709992 ACCCCAAGCTCTCTCTCTCT 59.290 55.000 0.00 0.00 0.00 3.10
724 742 1.063717 CCCCAAGCTCTCTCTCTCTCT 60.064 57.143 0.00 0.00 0.00 3.10
725 743 2.174639 CCCCAAGCTCTCTCTCTCTCTA 59.825 54.545 0.00 0.00 0.00 2.43
726 744 3.181429 CCCCAAGCTCTCTCTCTCTCTAT 60.181 52.174 0.00 0.00 0.00 1.98
728 746 4.202503 CCCAAGCTCTCTCTCTCTCTATCT 60.203 50.000 0.00 0.00 0.00 1.98
729 747 5.013079 CCCAAGCTCTCTCTCTCTCTATCTA 59.987 48.000 0.00 0.00 0.00 1.98
730 748 6.296662 CCCAAGCTCTCTCTCTCTCTATCTAT 60.297 46.154 0.00 0.00 0.00 1.98
732 750 7.310921 CCAAGCTCTCTCTCTCTCTATCTATCT 60.311 44.444 0.00 0.00 0.00 1.98
733 751 8.753133 CAAGCTCTCTCTCTCTCTATCTATCTA 58.247 40.741 0.00 0.00 0.00 1.98
734 752 9.499369 AAGCTCTCTCTCTCTCTATCTATCTAT 57.501 37.037 0.00 0.00 0.00 1.98
735 753 9.142014 AGCTCTCTCTCTCTCTATCTATCTATC 57.858 40.741 0.00 0.00 0.00 2.08
736 754 9.142014 GCTCTCTCTCTCTCTATCTATCTATCT 57.858 40.741 0.00 0.00 0.00 1.98
811 829 4.236147 TCCGAACAAATGACATGCAATTG 58.764 39.130 13.13 13.13 41.98 2.32
827 845 3.249559 GCAATTGCCAATTTCAAACGGAA 59.750 39.130 20.06 0.00 34.31 4.30
1060 1079 2.909006 ACAGAGATCCCGCATATTCCAT 59.091 45.455 0.00 0.00 0.00 3.41
1100 1124 0.898320 AGCAGTCGAGGCAGTACAAT 59.102 50.000 11.19 0.00 0.00 2.71
1142 1166 3.364441 GCCTGGTGCGTGCAATGA 61.364 61.111 0.00 0.00 0.00 2.57
1154 1178 0.675837 TGCAATGAGGAGCTCAGCAC 60.676 55.000 17.19 0.00 44.08 4.40
1178 1202 4.100189 CCCTCTGTCTAGTTATCACCTTGG 59.900 50.000 0.00 0.00 0.00 3.61
1293 1317 6.936279 TCCTTATATGATCTGATTCGTTCCC 58.064 40.000 0.00 0.00 0.00 3.97
1359 1383 3.259314 AGCAGGTGCCATGGGTCA 61.259 61.111 15.13 0.00 43.38 4.02
1421 1446 3.905493 TTGGGGGTGGAAAAGATGTAA 57.095 42.857 0.00 0.00 0.00 2.41
1449 1474 6.529220 AGTGAGCTTTGTTCTAGACTTCATT 58.471 36.000 0.00 0.00 0.00 2.57
1452 1477 7.064016 GTGAGCTTTGTTCTAGACTTCATTAGG 59.936 40.741 0.00 0.00 0.00 2.69
1486 1511 7.043656 GGTGTTTACAGCAAAATCTTTGTACAC 60.044 37.037 7.16 0.00 43.34 2.90
1495 1520 8.132362 AGCAAAATCTTTGTACACGAAATTACA 58.868 29.630 0.00 0.00 0.00 2.41
1506 1531 9.171701 TGTACACGAAATTACATTAAAAACAGC 57.828 29.630 0.00 0.00 0.00 4.40
1508 1533 8.280909 ACACGAAATTACATTAAAAACAGCAG 57.719 30.769 0.00 0.00 0.00 4.24
1580 1611 9.256228 TGTGGAACAGAGATAGTAACTTCTATT 57.744 33.333 0.00 0.00 45.67 1.73
1616 1647 6.093495 TGAACAAGTGATCGTTTCTCAAGTTT 59.907 34.615 0.00 0.00 0.00 2.66
1641 1672 6.116126 GTCTGGCACCTATAGAGATTTTGTT 58.884 40.000 0.00 0.00 0.00 2.83
1662 1693 6.664515 TGTTAATTGTTTCGCTTACTTCCTG 58.335 36.000 0.00 0.00 0.00 3.86
1663 1694 3.831715 ATTGTTTCGCTTACTTCCTGC 57.168 42.857 0.00 0.00 0.00 4.85
1664 1695 1.519408 TGTTTCGCTTACTTCCTGCC 58.481 50.000 0.00 0.00 0.00 4.85
1696 1727 1.003545 CAAAGTGTGGAGAGTGCAACG 60.004 52.381 0.00 0.00 45.86 4.10
1724 1755 5.683681 TGTTCATGCTTCATGGAATAGCTA 58.316 37.500 0.00 0.00 41.66 3.32
1725 1756 5.761726 TGTTCATGCTTCATGGAATAGCTAG 59.238 40.000 0.00 0.00 41.66 3.42
1726 1757 5.813513 TCATGCTTCATGGAATAGCTAGA 57.186 39.130 0.00 0.00 41.66 2.43
1728 1759 6.171213 TCATGCTTCATGGAATAGCTAGATG 58.829 40.000 0.00 0.00 41.66 2.90
1730 1761 5.303165 TGCTTCATGGAATAGCTAGATGTG 58.697 41.667 0.00 0.00 35.93 3.21
1732 1763 5.762218 GCTTCATGGAATAGCTAGATGTGTT 59.238 40.000 0.00 0.00 32.26 3.32
1733 1764 6.931281 GCTTCATGGAATAGCTAGATGTGTTA 59.069 38.462 0.00 0.00 32.26 2.41
1734 1765 7.117523 GCTTCATGGAATAGCTAGATGTGTTAG 59.882 40.741 0.00 0.00 32.26 2.34
1735 1766 7.603180 TCATGGAATAGCTAGATGTGTTAGT 57.397 36.000 0.00 0.00 0.00 2.24
1736 1767 8.023021 TCATGGAATAGCTAGATGTGTTAGTT 57.977 34.615 0.00 0.00 0.00 2.24
1739 1770 8.534954 TGGAATAGCTAGATGTGTTAGTTAGT 57.465 34.615 0.00 0.00 0.00 2.24
1740 1771 8.978472 TGGAATAGCTAGATGTGTTAGTTAGTT 58.022 33.333 0.00 0.00 0.00 2.24
1741 1772 9.819267 GGAATAGCTAGATGTGTTAGTTAGTTT 57.181 33.333 0.00 0.00 0.00 2.66
1745 1776 8.549338 AGCTAGATGTGTTAGTTAGTTTTTCC 57.451 34.615 0.00 0.00 0.00 3.13
1746 1777 7.331193 AGCTAGATGTGTTAGTTAGTTTTTCCG 59.669 37.037 0.00 0.00 0.00 4.30
1747 1778 6.796705 AGATGTGTTAGTTAGTTTTTCCGG 57.203 37.500 0.00 0.00 0.00 5.14
1748 1779 6.527423 AGATGTGTTAGTTAGTTTTTCCGGA 58.473 36.000 0.00 0.00 0.00 5.14
1749 1780 6.993902 AGATGTGTTAGTTAGTTTTTCCGGAA 59.006 34.615 14.35 14.35 0.00 4.30
1842 1946 6.352016 ACACTGACACTATCTCTGTTTGAT 57.648 37.500 0.00 0.00 0.00 2.57
1864 1968 8.969260 TGATATATATTTCAGATGGACATGGC 57.031 34.615 0.00 0.00 0.00 4.40
1886 1990 4.527816 GCTAGAGTGATCCCAGAAGATGAT 59.472 45.833 0.00 0.00 0.00 2.45
1902 2006 0.599060 TGATGCGGTGAACGTCAGTA 59.401 50.000 0.00 0.00 46.52 2.74
1913 2017 0.973632 ACGTCAGTACAAGGATGGCA 59.026 50.000 0.00 0.00 0.00 4.92
2080 2184 5.677567 TCTATTGTGTGATGTGATGCTCAT 58.322 37.500 0.00 0.00 0.00 2.90
2248 2352 3.513515 CAGTTCTTCTCCCTAGTGCTTCT 59.486 47.826 0.00 0.00 0.00 2.85
2268 2372 0.531090 TTCCACCCAACGTTGTCTCG 60.531 55.000 25.63 11.01 0.00 4.04
2272 2376 2.317609 CCCAACGTTGTCTCGCCTG 61.318 63.158 25.63 8.54 0.00 4.85
2332 3914 5.402270 GCATGTAGCCACAAGTTACTTTTTG 59.598 40.000 0.00 0.00 38.42 2.44
2333 3915 4.927422 TGTAGCCACAAGTTACTTTTTGC 58.073 39.130 0.00 0.00 33.57 3.68
2334 3916 4.399618 TGTAGCCACAAGTTACTTTTTGCA 59.600 37.500 9.42 0.00 33.57 4.08
2335 3917 4.670896 AGCCACAAGTTACTTTTTGCAT 57.329 36.364 9.42 0.00 0.00 3.96
2337 3919 6.155475 AGCCACAAGTTACTTTTTGCATTA 57.845 33.333 9.42 0.00 0.00 1.90
2381 3965 3.004002 ACATTATCAACTCATGCATGCCG 59.996 43.478 22.25 16.64 0.00 5.69
2384 3968 0.804364 TCAACTCATGCATGCCGTTC 59.196 50.000 22.25 0.00 0.00 3.95
2395 3979 1.209504 CATGCCGTTCTTAAGGAGGGA 59.790 52.381 24.04 15.45 0.00 4.20
2398 3982 1.675116 GCCGTTCTTAAGGAGGGACAC 60.675 57.143 24.04 4.96 0.00 3.67
2399 3983 1.621814 CCGTTCTTAAGGAGGGACACA 59.378 52.381 16.33 0.00 0.00 3.72
2400 3984 2.612221 CCGTTCTTAAGGAGGGACACAC 60.612 54.545 16.33 0.00 0.00 3.82
2401 3985 2.036733 CGTTCTTAAGGAGGGACACACA 59.963 50.000 1.85 0.00 0.00 3.72
2402 3986 3.400255 GTTCTTAAGGAGGGACACACAC 58.600 50.000 1.85 0.00 0.00 3.82
2403 3987 2.684943 TCTTAAGGAGGGACACACACA 58.315 47.619 1.85 0.00 0.00 3.72
2404 3988 2.367567 TCTTAAGGAGGGACACACACAC 59.632 50.000 1.85 0.00 0.00 3.82
2405 3989 1.796017 TAAGGAGGGACACACACACA 58.204 50.000 0.00 0.00 0.00 3.72
2406 3990 0.180406 AAGGAGGGACACACACACAC 59.820 55.000 0.00 0.00 0.00 3.82
2409 3993 1.299541 GAGGGACACACACACACAAG 58.700 55.000 0.00 0.00 0.00 3.16
2410 3994 0.107214 AGGGACACACACACACAAGG 60.107 55.000 0.00 0.00 0.00 3.61
2412 3996 1.299541 GGACACACACACACAAGGAG 58.700 55.000 0.00 0.00 0.00 3.69
2415 3999 1.299541 CACACACACACAAGGAGTCC 58.700 55.000 0.00 0.00 0.00 3.85
2416 4000 0.908910 ACACACACACAAGGAGTCCA 59.091 50.000 12.86 0.00 0.00 4.02
2417 4001 1.299541 CACACACACAAGGAGTCCAC 58.700 55.000 12.86 0.00 0.00 4.02
2418 4002 0.908910 ACACACACAAGGAGTCCACA 59.091 50.000 12.86 0.00 0.00 4.17
2420 4004 1.942657 CACACACAAGGAGTCCACAAG 59.057 52.381 12.86 0.89 0.00 3.16
2421 4005 1.837439 ACACACAAGGAGTCCACAAGA 59.163 47.619 12.86 0.00 0.00 3.02
2423 4007 2.614057 CACACAAGGAGTCCACAAGAAC 59.386 50.000 12.86 0.00 0.00 3.01
2424 4008 2.238646 ACACAAGGAGTCCACAAGAACA 59.761 45.455 12.86 0.00 0.00 3.18
2425 4009 2.614057 CACAAGGAGTCCACAAGAACAC 59.386 50.000 12.86 0.00 0.00 3.32
2426 4010 2.238646 ACAAGGAGTCCACAAGAACACA 59.761 45.455 12.86 0.00 0.00 3.72
2427 4011 3.278574 CAAGGAGTCCACAAGAACACAA 58.721 45.455 12.86 0.00 0.00 3.33
2428 4012 3.644966 AGGAGTCCACAAGAACACAAA 57.355 42.857 12.86 0.00 0.00 2.83
2429 4013 3.545703 AGGAGTCCACAAGAACACAAAG 58.454 45.455 12.86 0.00 0.00 2.77
2431 4015 4.163458 AGGAGTCCACAAGAACACAAAGTA 59.837 41.667 12.86 0.00 0.00 2.24
2432 4016 4.272748 GGAGTCCACAAGAACACAAAGTAC 59.727 45.833 3.60 0.00 0.00 2.73
2433 4017 4.839121 AGTCCACAAGAACACAAAGTACA 58.161 39.130 0.00 0.00 0.00 2.90
2434 4018 5.250200 AGTCCACAAGAACACAAAGTACAA 58.750 37.500 0.00 0.00 0.00 2.41
2436 4020 6.038271 AGTCCACAAGAACACAAAGTACAATC 59.962 38.462 0.00 0.00 0.00 2.67
2437 4021 6.038271 GTCCACAAGAACACAAAGTACAATCT 59.962 38.462 0.00 0.00 0.00 2.40
2438 4022 6.038161 TCCACAAGAACACAAAGTACAATCTG 59.962 38.462 0.00 0.00 0.00 2.90
2439 4023 6.201517 CACAAGAACACAAAGTACAATCTGG 58.798 40.000 0.00 0.00 0.00 3.86
2440 4024 5.299279 ACAAGAACACAAAGTACAATCTGGG 59.701 40.000 0.00 0.00 0.00 4.45
2442 4026 5.445964 AGAACACAAAGTACAATCTGGGTT 58.554 37.500 0.00 0.00 0.00 4.11
2443 4027 6.597562 AGAACACAAAGTACAATCTGGGTTA 58.402 36.000 0.00 0.00 0.00 2.85
2444 4028 7.057894 AGAACACAAAGTACAATCTGGGTTAA 58.942 34.615 0.00 0.00 0.00 2.01
2445 4029 7.724061 AGAACACAAAGTACAATCTGGGTTAAT 59.276 33.333 0.00 0.00 0.00 1.40
2446 4030 7.214467 ACACAAAGTACAATCTGGGTTAATG 57.786 36.000 0.00 0.00 0.00 1.90
2447 4031 6.092748 CACAAAGTACAATCTGGGTTAATGC 58.907 40.000 0.00 0.00 0.00 3.56
2448 4032 6.010219 ACAAAGTACAATCTGGGTTAATGCT 58.990 36.000 0.00 0.00 0.00 3.79
2449 4033 6.071952 ACAAAGTACAATCTGGGTTAATGCTG 60.072 38.462 0.00 0.00 0.00 4.41
2450 4034 5.435686 AGTACAATCTGGGTTAATGCTGA 57.564 39.130 0.00 0.00 0.00 4.26
2451 4035 5.431765 AGTACAATCTGGGTTAATGCTGAG 58.568 41.667 0.00 0.00 0.00 3.35
2452 4036 3.624777 ACAATCTGGGTTAATGCTGAGG 58.375 45.455 0.00 0.00 0.00 3.86
2453 4037 2.954318 CAATCTGGGTTAATGCTGAGGG 59.046 50.000 0.00 0.00 0.00 4.30
2454 4038 0.255890 TCTGGGTTAATGCTGAGGGC 59.744 55.000 0.00 0.00 42.22 5.19
2455 4039 1.077787 TGGGTTAATGCTGAGGGCG 60.078 57.895 0.00 0.00 45.43 6.13
2456 4040 2.481471 GGGTTAATGCTGAGGGCGC 61.481 63.158 0.00 0.00 45.43 6.53
2457 4041 1.748879 GGTTAATGCTGAGGGCGCA 60.749 57.895 10.83 0.00 45.43 6.09
2458 4042 1.718757 GGTTAATGCTGAGGGCGCAG 61.719 60.000 10.83 0.00 45.43 5.18
2477 4061 2.140065 GCTCAACAAGCCCTGAAAAC 57.860 50.000 0.00 0.00 45.92 2.43
2478 4062 1.408702 GCTCAACAAGCCCTGAAAACA 59.591 47.619 0.00 0.00 45.92 2.83
2479 4063 2.159114 GCTCAACAAGCCCTGAAAACAA 60.159 45.455 0.00 0.00 45.92 2.83
2480 4064 3.678529 GCTCAACAAGCCCTGAAAACAAA 60.679 43.478 0.00 0.00 45.92 2.83
2481 4065 4.502962 CTCAACAAGCCCTGAAAACAAAA 58.497 39.130 0.00 0.00 0.00 2.44
2482 4066 4.899502 TCAACAAGCCCTGAAAACAAAAA 58.100 34.783 0.00 0.00 0.00 1.94
2499 4083 1.745232 AAAAACACGAGGCACAGACA 58.255 45.000 0.00 0.00 0.00 3.41
2500 4084 1.967319 AAAACACGAGGCACAGACAT 58.033 45.000 0.00 0.00 0.00 3.06
2501 4085 1.229428 AAACACGAGGCACAGACATG 58.771 50.000 0.00 0.00 0.00 3.21
2502 4086 1.230635 AACACGAGGCACAGACATGC 61.231 55.000 0.00 0.00 45.34 4.06
2510 4094 0.737219 GCACAGACATGCAAGATCCC 59.263 55.000 0.00 0.00 45.39 3.85
2511 4095 1.951895 GCACAGACATGCAAGATCCCA 60.952 52.381 0.00 0.00 45.39 4.37
2512 4096 2.439409 CACAGACATGCAAGATCCCAA 58.561 47.619 0.00 0.00 0.00 4.12
2513 4097 2.422479 CACAGACATGCAAGATCCCAAG 59.578 50.000 0.00 0.00 0.00 3.61
2544 4128 8.599055 TGCATTTTTAACAAGATTTGCACATA 57.401 26.923 0.00 0.00 34.24 2.29
2601 4186 5.528690 TCTCTTCAATACAACCATGCTATGC 59.471 40.000 0.00 0.00 0.00 3.14
2661 4246 7.445121 TGCATTAATGTATTCACCCAAAACAA 58.555 30.769 16.61 0.00 0.00 2.83
2678 4263 1.679139 CAAGCCACCTTGTCAACTCA 58.321 50.000 0.00 0.00 42.76 3.41
2679 4264 2.233271 CAAGCCACCTTGTCAACTCAT 58.767 47.619 0.00 0.00 42.76 2.90
2693 4886 4.937620 GTCAACTCATGCATGACCTTAAGA 59.062 41.667 25.42 13.78 37.97 2.10
2717 4910 8.370182 AGAGAACCAAGTCATGCAAAATATTTT 58.630 29.630 7.64 7.64 0.00 1.82
2785 4978 1.947146 CCACGACAACGCGTCTTCA 60.947 57.895 14.44 0.00 43.59 3.02
2815 5008 1.129251 GTCACATCACCAAGTCATGCG 59.871 52.381 0.00 0.00 0.00 4.73
2827 5020 5.997746 ACCAAGTCATGCGCATAGTTATAAT 59.002 36.000 24.84 2.63 0.00 1.28
2838 5031 9.015577 TGCGCATAGTTATAATTTACTTTTTGC 57.984 29.630 5.66 0.00 0.00 3.68
2839 5032 9.015577 GCGCATAGTTATAATTTACTTTTTGCA 57.984 29.630 0.30 0.00 0.00 4.08
2914 5110 5.391312 GGAACCAAGTCATGCAAAATACT 57.609 39.130 0.00 0.00 0.00 2.12
2915 5111 5.402398 GGAACCAAGTCATGCAAAATACTC 58.598 41.667 0.00 0.00 0.00 2.59
2916 5112 5.391312 AACCAAGTCATGCAAAATACTCC 57.609 39.130 0.00 0.00 0.00 3.85
2917 5113 3.763897 ACCAAGTCATGCAAAATACTCCC 59.236 43.478 0.00 0.00 0.00 4.30
2918 5114 3.181497 CCAAGTCATGCAAAATACTCCCG 60.181 47.826 0.00 0.00 0.00 5.14
2919 5115 2.017049 AGTCATGCAAAATACTCCCGC 58.983 47.619 0.00 0.00 0.00 6.13
2920 5116 1.742831 GTCATGCAAAATACTCCCGCA 59.257 47.619 0.00 0.00 36.95 5.69
2921 5117 1.742831 TCATGCAAAATACTCCCGCAC 59.257 47.619 0.00 0.00 35.02 5.34
2922 5118 1.745087 CATGCAAAATACTCCCGCACT 59.255 47.619 0.00 0.00 35.02 4.40
2923 5119 2.772077 TGCAAAATACTCCCGCACTA 57.228 45.000 0.00 0.00 0.00 2.74
2924 5120 2.352388 TGCAAAATACTCCCGCACTAC 58.648 47.619 0.00 0.00 0.00 2.73
2925 5121 2.027561 TGCAAAATACTCCCGCACTACT 60.028 45.455 0.00 0.00 0.00 2.57
2926 5122 3.007635 GCAAAATACTCCCGCACTACTT 58.992 45.455 0.00 0.00 0.00 2.24
2927 5123 3.439129 GCAAAATACTCCCGCACTACTTT 59.561 43.478 0.00 0.00 0.00 2.66
2928 5124 4.082949 GCAAAATACTCCCGCACTACTTTT 60.083 41.667 0.00 0.00 0.00 2.27
2929 5125 5.564063 GCAAAATACTCCCGCACTACTTTTT 60.564 40.000 0.00 0.00 0.00 1.94
2930 5126 5.622770 AAATACTCCCGCACTACTTTTTG 57.377 39.130 0.00 0.00 0.00 2.44
2931 5127 2.632987 ACTCCCGCACTACTTTTTGT 57.367 45.000 0.00 0.00 0.00 2.83
2932 5128 2.927028 ACTCCCGCACTACTTTTTGTT 58.073 42.857 0.00 0.00 0.00 2.83
2933 5129 3.284617 ACTCCCGCACTACTTTTTGTTT 58.715 40.909 0.00 0.00 0.00 2.83
2934 5130 4.453751 ACTCCCGCACTACTTTTTGTTTA 58.546 39.130 0.00 0.00 0.00 2.01
2935 5131 5.067954 ACTCCCGCACTACTTTTTGTTTAT 58.932 37.500 0.00 0.00 0.00 1.40
2936 5132 5.533528 ACTCCCGCACTACTTTTTGTTTATT 59.466 36.000 0.00 0.00 0.00 1.40
2937 5133 6.040054 ACTCCCGCACTACTTTTTGTTTATTT 59.960 34.615 0.00 0.00 0.00 1.40
2938 5134 7.229106 ACTCCCGCACTACTTTTTGTTTATTTA 59.771 33.333 0.00 0.00 0.00 1.40
2939 5135 7.586747 TCCCGCACTACTTTTTGTTTATTTAG 58.413 34.615 0.00 0.00 0.00 1.85
2940 5136 6.307077 CCCGCACTACTTTTTGTTTATTTAGC 59.693 38.462 0.00 0.00 0.00 3.09
2941 5137 6.858993 CCGCACTACTTTTTGTTTATTTAGCA 59.141 34.615 0.00 0.00 0.00 3.49
2942 5138 7.540745 CCGCACTACTTTTTGTTTATTTAGCAT 59.459 33.333 0.00 0.00 0.00 3.79
2943 5139 8.911662 CGCACTACTTTTTGTTTATTTAGCATT 58.088 29.630 0.00 0.00 0.00 3.56
2966 5162 9.692749 CATTCATTTATGCATTTCTAGCAAGAT 57.307 29.630 3.54 0.00 46.27 2.40
2968 5164 9.740239 TTCATTTATGCATTTCTAGCAAGATTC 57.260 29.630 3.54 0.00 46.27 2.52
2969 5165 9.128404 TCATTTATGCATTTCTAGCAAGATTCT 57.872 29.630 3.54 0.00 46.27 2.40
2970 5166 9.395707 CATTTATGCATTTCTAGCAAGATTCTC 57.604 33.333 3.54 0.00 46.27 2.87
2971 5167 5.670149 ATGCATTTCTAGCAAGATTCTCG 57.330 39.130 0.00 0.00 46.27 4.04
2972 5168 3.310774 TGCATTTCTAGCAAGATTCTCGC 59.689 43.478 0.00 0.00 39.39 5.03
2973 5169 3.603401 GCATTTCTAGCAAGATTCTCGCG 60.603 47.826 0.00 0.00 0.00 5.87
2974 5170 2.209838 TTCTAGCAAGATTCTCGCGG 57.790 50.000 6.13 0.00 0.00 6.46
2975 5171 0.249073 TCTAGCAAGATTCTCGCGGC 60.249 55.000 6.13 0.00 0.00 6.53
2976 5172 0.528466 CTAGCAAGATTCTCGCGGCA 60.528 55.000 6.13 0.00 0.00 5.69
2977 5173 0.108377 TAGCAAGATTCTCGCGGCAA 60.108 50.000 6.13 0.00 0.00 4.52
2978 5174 0.745845 AGCAAGATTCTCGCGGCAAT 60.746 50.000 6.13 4.50 0.00 3.56
2979 5175 0.590732 GCAAGATTCTCGCGGCAATG 60.591 55.000 6.13 0.00 0.00 2.82
2980 5176 0.729116 CAAGATTCTCGCGGCAATGT 59.271 50.000 6.13 0.01 0.00 2.71
2981 5177 0.729116 AAGATTCTCGCGGCAATGTG 59.271 50.000 6.13 0.00 0.00 3.21
2982 5178 0.391661 AGATTCTCGCGGCAATGTGT 60.392 50.000 6.13 0.00 0.00 3.72
2983 5179 0.247814 GATTCTCGCGGCAATGTGTG 60.248 55.000 6.13 0.00 0.00 3.82
2984 5180 1.647545 ATTCTCGCGGCAATGTGTGG 61.648 55.000 6.13 0.00 0.00 4.17
2985 5181 3.803082 CTCGCGGCAATGTGTGGG 61.803 66.667 6.13 0.00 0.00 4.61
2988 5184 2.360600 GCGGCAATGTGTGGGGTA 60.361 61.111 0.00 0.00 0.00 3.69
2989 5185 2.696759 GCGGCAATGTGTGGGGTAC 61.697 63.158 0.00 0.00 0.00 3.34
3021 5217 9.749996 AGTAATATATTAGATCATCCCCCATGT 57.250 33.333 5.39 0.00 33.66 3.21
3023 5219 8.642964 AATATATTAGATCATCCCCCATGTCA 57.357 34.615 0.00 0.00 33.66 3.58
3024 5220 6.975471 ATATTAGATCATCCCCCATGTCAA 57.025 37.500 0.00 0.00 33.66 3.18
3025 5221 4.437682 TTAGATCATCCCCCATGTCAAC 57.562 45.455 0.00 0.00 33.66 3.18
3026 5222 2.207988 AGATCATCCCCCATGTCAACA 58.792 47.619 0.00 0.00 33.66 3.33
3027 5223 2.787625 AGATCATCCCCCATGTCAACAT 59.212 45.455 0.00 0.00 36.96 2.71
3028 5224 3.982730 AGATCATCCCCCATGTCAACATA 59.017 43.478 0.00 0.00 34.26 2.29
3029 5225 4.604930 AGATCATCCCCCATGTCAACATAT 59.395 41.667 0.00 0.00 34.26 1.78
3030 5226 4.812403 TCATCCCCCATGTCAACATATT 57.188 40.909 0.00 0.00 34.26 1.28
3031 5227 5.141455 TCATCCCCCATGTCAACATATTT 57.859 39.130 0.00 0.00 34.26 1.40
3032 5228 5.527385 TCATCCCCCATGTCAACATATTTT 58.473 37.500 0.00 0.00 34.26 1.82
3033 5229 5.963253 TCATCCCCCATGTCAACATATTTTT 59.037 36.000 0.00 0.00 34.26 1.94
3079 5275 4.669318 GGCTTTTCTAAAATAGCCGAACC 58.331 43.478 4.29 0.00 45.61 3.62
3080 5276 4.157105 GGCTTTTCTAAAATAGCCGAACCA 59.843 41.667 4.29 0.00 45.61 3.67
3081 5277 5.163550 GGCTTTTCTAAAATAGCCGAACCAT 60.164 40.000 4.29 0.00 45.61 3.55
3082 5278 5.743872 GCTTTTCTAAAATAGCCGAACCATG 59.256 40.000 0.00 0.00 34.49 3.66
3083 5279 6.625081 GCTTTTCTAAAATAGCCGAACCATGT 60.625 38.462 0.00 0.00 34.49 3.21
3084 5280 5.811399 TTCTAAAATAGCCGAACCATGTG 57.189 39.130 0.00 0.00 0.00 3.21
3085 5281 5.092554 TCTAAAATAGCCGAACCATGTGA 57.907 39.130 0.00 0.00 0.00 3.58
3086 5282 5.492895 TCTAAAATAGCCGAACCATGTGAA 58.507 37.500 0.00 0.00 0.00 3.18
3087 5283 5.941058 TCTAAAATAGCCGAACCATGTGAAA 59.059 36.000 0.00 0.00 0.00 2.69
3088 5284 5.461032 AAAATAGCCGAACCATGTGAAAA 57.539 34.783 0.00 0.00 0.00 2.29
3089 5285 5.659440 AAATAGCCGAACCATGTGAAAAT 57.341 34.783 0.00 0.00 0.00 1.82
3090 5286 6.767524 AAATAGCCGAACCATGTGAAAATA 57.232 33.333 0.00 0.00 0.00 1.40
3091 5287 6.959639 AATAGCCGAACCATGTGAAAATAT 57.040 33.333 0.00 0.00 0.00 1.28
3092 5288 6.959639 ATAGCCGAACCATGTGAAAATATT 57.040 33.333 0.00 0.00 0.00 1.28
3093 5289 8.458573 AATAGCCGAACCATGTGAAAATATTA 57.541 30.769 0.00 0.00 0.00 0.98
3094 5290 6.959639 AGCCGAACCATGTGAAAATATTAT 57.040 33.333 0.00 0.00 0.00 1.28
3095 5291 7.346751 AGCCGAACCATGTGAAAATATTATT 57.653 32.000 0.00 0.00 0.00 1.40
3096 5292 8.458573 AGCCGAACCATGTGAAAATATTATTA 57.541 30.769 0.00 0.00 0.00 0.98
3097 5293 8.349983 AGCCGAACCATGTGAAAATATTATTAC 58.650 33.333 0.00 0.00 0.00 1.89
3098 5294 8.132362 GCCGAACCATGTGAAAATATTATTACA 58.868 33.333 0.00 0.00 0.00 2.41
3122 5318 9.793252 ACATGCATATATCTTTCACTGAAAAAC 57.207 29.630 0.00 0.00 30.84 2.43
3125 5321 9.230122 TGCATATATCTTTCACTGAAAAACTCA 57.770 29.630 5.72 0.00 30.84 3.41
3132 5328 9.874205 ATCTTTCACTGAAAAACTCAAAAATCA 57.126 25.926 5.72 0.00 32.17 2.57
3133 5329 9.874205 TCTTTCACTGAAAAACTCAAAAATCAT 57.126 25.926 5.72 0.00 32.17 2.45
3135 5331 7.912949 TCACTGAAAAACTCAAAAATCATCG 57.087 32.000 0.00 0.00 32.17 3.84
3136 5332 7.702386 TCACTGAAAAACTCAAAAATCATCGA 58.298 30.769 0.00 0.00 32.17 3.59
3137 5333 8.187480 TCACTGAAAAACTCAAAAATCATCGAA 58.813 29.630 0.00 0.00 32.17 3.71
3138 5334 8.474577 CACTGAAAAACTCAAAAATCATCGAAG 58.525 33.333 0.00 0.00 32.17 3.79
3139 5335 7.168135 ACTGAAAAACTCAAAAATCATCGAAGC 59.832 33.333 0.00 0.00 32.17 3.86
3140 5336 7.202526 TGAAAAACTCAAAAATCATCGAAGCT 58.797 30.769 0.00 0.00 0.00 3.74
3141 5337 6.998258 AAAACTCAAAAATCATCGAAGCTG 57.002 33.333 0.00 0.00 0.00 4.24
3142 5338 4.691860 ACTCAAAAATCATCGAAGCTGG 57.308 40.909 0.00 0.00 0.00 4.85
3143 5339 3.441572 ACTCAAAAATCATCGAAGCTGGG 59.558 43.478 0.00 0.00 0.00 4.45
3144 5340 3.420893 TCAAAAATCATCGAAGCTGGGT 58.579 40.909 0.00 0.00 0.00 4.51
3145 5341 3.826157 TCAAAAATCATCGAAGCTGGGTT 59.174 39.130 0.00 0.00 0.00 4.11
3146 5342 4.280677 TCAAAAATCATCGAAGCTGGGTTT 59.719 37.500 0.00 0.00 0.00 3.27
3147 5343 4.871933 AAAATCATCGAAGCTGGGTTTT 57.128 36.364 0.00 0.00 0.00 2.43
3148 5344 5.975693 AAAATCATCGAAGCTGGGTTTTA 57.024 34.783 0.00 0.00 0.00 1.52
3149 5345 5.567138 AAATCATCGAAGCTGGGTTTTAG 57.433 39.130 0.00 0.00 0.00 1.85
3150 5346 3.695830 TCATCGAAGCTGGGTTTTAGT 57.304 42.857 0.00 0.00 0.00 2.24
3151 5347 3.334691 TCATCGAAGCTGGGTTTTAGTG 58.665 45.455 0.00 0.00 0.00 2.74
3152 5348 2.922740 TCGAAGCTGGGTTTTAGTGT 57.077 45.000 0.00 0.00 0.00 3.55
3153 5349 3.202829 TCGAAGCTGGGTTTTAGTGTT 57.797 42.857 0.00 0.00 0.00 3.32
3154 5350 3.135994 TCGAAGCTGGGTTTTAGTGTTC 58.864 45.455 0.00 0.00 0.00 3.18
3155 5351 3.139077 CGAAGCTGGGTTTTAGTGTTCT 58.861 45.455 0.00 0.00 0.00 3.01
3156 5352 4.039488 TCGAAGCTGGGTTTTAGTGTTCTA 59.961 41.667 0.00 0.00 0.00 2.10
3157 5353 4.753107 CGAAGCTGGGTTTTAGTGTTCTAA 59.247 41.667 0.00 0.00 34.76 2.10
3158 5354 5.237779 CGAAGCTGGGTTTTAGTGTTCTAAA 59.762 40.000 0.00 0.00 42.24 1.85
3159 5355 6.387041 AAGCTGGGTTTTAGTGTTCTAAAC 57.613 37.500 0.00 0.00 43.20 2.01
3160 5356 4.825634 AGCTGGGTTTTAGTGTTCTAAACC 59.174 41.667 0.00 0.00 43.20 3.27
3161 5357 4.825634 GCTGGGTTTTAGTGTTCTAAACCT 59.174 41.667 13.72 0.00 43.20 3.50
3162 5358 5.048921 GCTGGGTTTTAGTGTTCTAAACCTC 60.049 44.000 13.72 6.69 43.20 3.85
3163 5359 6.256643 TGGGTTTTAGTGTTCTAAACCTCT 57.743 37.500 13.72 0.32 43.20 3.69
3164 5360 6.665695 TGGGTTTTAGTGTTCTAAACCTCTT 58.334 36.000 13.72 0.00 43.20 2.85
3165 5361 7.120716 TGGGTTTTAGTGTTCTAAACCTCTTT 58.879 34.615 13.72 0.00 43.20 2.52
3166 5362 7.067737 TGGGTTTTAGTGTTCTAAACCTCTTTG 59.932 37.037 13.72 0.00 43.20 2.77
3167 5363 7.067859 GGGTTTTAGTGTTCTAAACCTCTTTGT 59.932 37.037 13.72 0.00 43.20 2.83
3168 5364 9.112725 GGTTTTAGTGTTCTAAACCTCTTTGTA 57.887 33.333 0.00 0.00 43.20 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.228367 AAGGCAGCAGTGGAAGTGG 60.228 57.895 0.00 0.00 37.87 4.00
5 6 0.535780 TCAAGGCAGCAGTGGAAGTG 60.536 55.000 0.00 0.00 41.28 3.16
6 7 0.183492 TTCAAGGCAGCAGTGGAAGT 59.817 50.000 0.00 0.00 0.00 3.01
7 8 0.879765 CTTCAAGGCAGCAGTGGAAG 59.120 55.000 0.00 0.00 0.00 3.46
8 9 0.473755 TCTTCAAGGCAGCAGTGGAA 59.526 50.000 0.00 0.00 0.00 3.53
198 201 0.178068 TATTCGGAGCCCTTCACAGC 59.822 55.000 0.00 0.00 0.00 4.40
230 236 6.257423 TGCATATGAAAAATAGACAACTGCG 58.743 36.000 6.97 0.00 32.06 5.18
261 267 6.492007 ACATTGAGTGAATCTGAACATGAC 57.508 37.500 0.00 0.00 0.00 3.06
288 294 8.826710 TCTGATTTATGCCAAAGTAAATAGACG 58.173 33.333 0.00 0.00 32.31 4.18
332 338 7.857316 AACACAAGTTTGCGAAGAAACATTCG 61.857 38.462 4.58 4.58 44.05 3.34
341 347 5.118510 ACAAAAAGAACACAAGTTTGCGAAG 59.881 36.000 0.00 0.00 38.30 3.79
405 411 6.751888 CACCCTTTAAATTTCCATCATCGAAC 59.248 38.462 0.00 0.00 0.00 3.95
408 414 5.127031 ACCACCCTTTAAATTTCCATCATCG 59.873 40.000 0.00 0.00 0.00 3.84
558 566 2.256117 AGCACTTTCAACTTAGCGGT 57.744 45.000 0.00 0.00 0.00 5.68
683 701 4.751098 GGGTAAACTTCATTGTACGTGACA 59.249 41.667 0.00 0.00 35.78 3.58
684 702 4.152938 GGGGTAAACTTCATTGTACGTGAC 59.847 45.833 0.00 0.00 0.00 3.67
689 707 4.765339 AGCTTGGGGTAAACTTCATTGTAC 59.235 41.667 0.00 0.00 0.00 2.90
694 712 3.589288 AGAGAGCTTGGGGTAAACTTCAT 59.411 43.478 0.00 0.00 0.00 2.57
741 759 7.702348 GTGCAACTACAAACAAGAAAGAAAGAT 59.298 33.333 0.00 0.00 0.00 2.40
745 763 5.184096 TGGTGCAACTACAAACAAGAAAGAA 59.816 36.000 2.04 0.00 36.74 2.52
749 767 4.702612 TCTTGGTGCAACTACAAACAAGAA 59.297 37.500 2.04 0.00 40.19 2.52
753 771 2.353269 CGTCTTGGTGCAACTACAAACA 59.647 45.455 2.04 0.00 36.74 2.83
811 829 2.409152 TCGTTCCGTTTGAAATTGGC 57.591 45.000 0.00 0.00 33.94 4.52
827 845 3.273434 CCATTTGTCCACATCTCATCGT 58.727 45.455 0.00 0.00 0.00 3.73
1060 1079 3.611025 ACCCTCAACCTCAATGGAAAA 57.389 42.857 0.00 0.00 39.71 2.29
1100 1124 7.011482 GCTGTTAAGTTCTCTTCTCTTGAACAA 59.989 37.037 0.00 0.00 41.56 2.83
1142 1166 2.686835 GAGGGGTGCTGAGCTCCT 60.687 66.667 23.03 17.64 41.35 3.69
1154 1178 3.917300 AGGTGATAACTAGACAGAGGGG 58.083 50.000 0.00 0.00 0.00 4.79
1178 1202 3.440522 GGAACCAAGAAGTAGAATGCCAC 59.559 47.826 0.00 0.00 0.00 5.01
1293 1317 0.400213 TGCACTCCTACACCCCAAAG 59.600 55.000 0.00 0.00 0.00 2.77
1359 1383 5.069119 CCTTTGGCTTAGGAGTGTTTTCTTT 59.931 40.000 0.00 0.00 34.56 2.52
1403 1427 2.042569 ACCTTACATCTTTTCCACCCCC 59.957 50.000 0.00 0.00 0.00 5.40
1404 1428 3.451402 ACCTTACATCTTTTCCACCCC 57.549 47.619 0.00 0.00 0.00 4.95
1421 1446 5.081032 AGTCTAGAACAAAGCTCACTACCT 58.919 41.667 0.00 0.00 0.00 3.08
1449 1474 4.139038 GCTGTAAACACCCTTCAAACCTA 58.861 43.478 0.00 0.00 0.00 3.08
1452 1477 4.379339 TTGCTGTAAACACCCTTCAAAC 57.621 40.909 0.00 0.00 0.00 2.93
1537 1568 9.507280 CTGTTCCACAATATATGTCATGAAAAC 57.493 33.333 0.00 0.00 41.46 2.43
1541 1572 8.021898 TCTCTGTTCCACAATATATGTCATGA 57.978 34.615 0.00 0.00 41.46 3.07
1616 1647 5.189736 ACAAAATCTCTATAGGTGCCAGACA 59.810 40.000 0.00 0.00 0.00 3.41
1641 1672 4.155280 GGCAGGAAGTAAGCGAAACAATTA 59.845 41.667 0.00 0.00 0.00 1.40
1652 1683 0.172803 ACGCTACGGCAGGAAGTAAG 59.827 55.000 0.00 0.00 38.60 2.34
1662 1693 0.584876 ACTTTGACAAACGCTACGGC 59.415 50.000 0.00 0.00 0.00 5.68
1663 1694 1.595794 ACACTTTGACAAACGCTACGG 59.404 47.619 0.00 0.00 0.00 4.02
1664 1695 2.598907 CCACACTTTGACAAACGCTACG 60.599 50.000 0.00 0.00 0.00 3.51
1696 1727 2.557924 TCCATGAAGCATGAACAACCAC 59.442 45.455 8.87 0.00 43.81 4.16
1724 1755 6.527423 TCCGGAAAAACTAACTAACACATCT 58.473 36.000 0.00 0.00 0.00 2.90
1725 1756 6.790285 TCCGGAAAAACTAACTAACACATC 57.210 37.500 0.00 0.00 0.00 3.06
1726 1757 7.499895 TCTTTCCGGAAAAACTAACTAACACAT 59.500 33.333 28.62 0.00 0.00 3.21
1728 1759 7.250445 TCTTTCCGGAAAAACTAACTAACAC 57.750 36.000 28.62 0.00 0.00 3.32
1730 1761 9.177304 CAAATCTTTCCGGAAAAACTAACTAAC 57.823 33.333 28.62 0.00 0.00 2.34
1732 1763 8.454570 ACAAATCTTTCCGGAAAAACTAACTA 57.545 30.769 28.62 5.18 0.00 2.24
1733 1764 7.342769 ACAAATCTTTCCGGAAAAACTAACT 57.657 32.000 28.62 8.55 0.00 2.24
1734 1765 7.997107 AACAAATCTTTCCGGAAAAACTAAC 57.003 32.000 28.62 0.00 0.00 2.34
1735 1766 8.905850 ACTAACAAATCTTTCCGGAAAAACTAA 58.094 29.630 28.62 13.20 0.00 2.24
1736 1767 8.454570 ACTAACAAATCTTTCCGGAAAAACTA 57.545 30.769 28.62 15.48 0.00 2.24
1739 1770 8.002984 AGAACTAACAAATCTTTCCGGAAAAA 57.997 30.769 28.62 18.46 0.00 1.94
1740 1771 7.576861 AGAACTAACAAATCTTTCCGGAAAA 57.423 32.000 28.62 19.61 0.00 2.29
1741 1772 7.576861 AAGAACTAACAAATCTTTCCGGAAA 57.423 32.000 27.33 27.33 29.35 3.13
1742 1773 7.422399 CAAAGAACTAACAAATCTTTCCGGAA 58.578 34.615 14.35 14.35 40.44 4.30
1743 1774 6.016610 CCAAAGAACTAACAAATCTTTCCGGA 60.017 38.462 0.00 0.00 40.44 5.14
1744 1775 6.149633 CCAAAGAACTAACAAATCTTTCCGG 58.850 40.000 0.00 0.00 40.44 5.14
1745 1776 6.016610 TCCCAAAGAACTAACAAATCTTTCCG 60.017 38.462 0.00 0.00 40.44 4.30
1746 1777 7.284919 TCCCAAAGAACTAACAAATCTTTCC 57.715 36.000 0.00 0.00 40.44 3.13
1747 1778 9.411801 GAATCCCAAAGAACTAACAAATCTTTC 57.588 33.333 0.00 0.00 40.44 2.62
1748 1779 8.923270 TGAATCCCAAAGAACTAACAAATCTTT 58.077 29.630 0.00 0.00 42.49 2.52
1749 1780 8.477419 TGAATCCCAAAGAACTAACAAATCTT 57.523 30.769 0.00 0.00 35.00 2.40
1842 1946 9.492730 TCTAGCCATGTCCATCTGAAATATATA 57.507 33.333 0.00 0.00 0.00 0.86
1864 1968 5.567224 GCATCATCTTCTGGGATCACTCTAG 60.567 48.000 0.00 0.00 0.00 2.43
1886 1990 0.102663 TTGTACTGACGTTCACCGCA 59.897 50.000 0.00 0.00 41.42 5.69
1902 2006 0.326264 GTCTCCAGTGCCATCCTTGT 59.674 55.000 0.00 0.00 0.00 3.16
1913 2017 1.306642 CGTAGTCCTGCGTCTCCAGT 61.307 60.000 0.00 0.00 34.04 4.00
2043 2147 4.821260 ACACAATAGATCAGCACAACACAA 59.179 37.500 0.00 0.00 0.00 3.33
2044 2148 4.213906 CACACAATAGATCAGCACAACACA 59.786 41.667 0.00 0.00 0.00 3.72
2222 2326 3.006967 GCACTAGGGAGAAGAACTGTTCA 59.993 47.826 21.50 0.00 0.00 3.18
2248 2352 1.670791 GAGACAACGTTGGGTGGAAA 58.329 50.000 30.34 0.00 0.00 3.13
2268 2372 3.834799 GCCCAATGCAGAGCAGGC 61.835 66.667 5.21 5.21 43.65 4.85
2332 3914 7.408910 GGGTGTTTTGCATGAATAATTAATGC 58.591 34.615 11.93 11.93 45.51 3.56
2333 3915 7.551974 TGGGGTGTTTTGCATGAATAATTAATG 59.448 33.333 0.00 0.00 0.00 1.90
2334 3916 7.552330 GTGGGGTGTTTTGCATGAATAATTAAT 59.448 33.333 0.00 0.00 0.00 1.40
2335 3917 6.876257 GTGGGGTGTTTTGCATGAATAATTAA 59.124 34.615 0.00 0.00 0.00 1.40
2337 3919 5.221803 TGTGGGGTGTTTTGCATGAATAATT 60.222 36.000 0.00 0.00 0.00 1.40
2381 3965 3.181458 TGTGTGTGTCCCTCCTTAAGAAC 60.181 47.826 3.36 0.00 0.00 3.01
2384 3968 2.104111 TGTGTGTGTGTCCCTCCTTAAG 59.896 50.000 0.00 0.00 0.00 1.85
2395 3979 1.406887 GGACTCCTTGTGTGTGTGTGT 60.407 52.381 0.00 0.00 0.00 3.72
2398 3982 1.299541 GTGGACTCCTTGTGTGTGTG 58.700 55.000 0.00 0.00 0.00 3.82
2399 3983 0.908910 TGTGGACTCCTTGTGTGTGT 59.091 50.000 0.00 0.00 0.00 3.72
2400 3984 1.942657 CTTGTGGACTCCTTGTGTGTG 59.057 52.381 0.00 0.00 0.00 3.82
2401 3985 1.837439 TCTTGTGGACTCCTTGTGTGT 59.163 47.619 0.00 0.00 0.00 3.72
2402 3986 2.614057 GTTCTTGTGGACTCCTTGTGTG 59.386 50.000 0.00 0.00 0.00 3.82
2403 3987 2.238646 TGTTCTTGTGGACTCCTTGTGT 59.761 45.455 0.00 0.00 0.00 3.72
2404 3988 2.614057 GTGTTCTTGTGGACTCCTTGTG 59.386 50.000 0.00 0.00 0.00 3.33
2405 3989 2.238646 TGTGTTCTTGTGGACTCCTTGT 59.761 45.455 0.00 0.00 0.00 3.16
2406 3990 2.917933 TGTGTTCTTGTGGACTCCTTG 58.082 47.619 0.00 0.00 0.00 3.61
2409 3993 3.279434 ACTTTGTGTTCTTGTGGACTCC 58.721 45.455 0.00 0.00 0.00 3.85
2410 3994 4.873827 TGTACTTTGTGTTCTTGTGGACTC 59.126 41.667 0.00 0.00 0.00 3.36
2412 3996 5.554822 TTGTACTTTGTGTTCTTGTGGAC 57.445 39.130 0.00 0.00 0.00 4.02
2415 3999 6.201517 CCAGATTGTACTTTGTGTTCTTGTG 58.798 40.000 0.00 0.00 0.00 3.33
2416 4000 5.299279 CCCAGATTGTACTTTGTGTTCTTGT 59.701 40.000 0.00 0.00 0.00 3.16
2417 4001 5.299279 ACCCAGATTGTACTTTGTGTTCTTG 59.701 40.000 0.00 0.00 0.00 3.02
2418 4002 5.445964 ACCCAGATTGTACTTTGTGTTCTT 58.554 37.500 0.00 0.00 0.00 2.52
2420 4004 5.767816 AACCCAGATTGTACTTTGTGTTC 57.232 39.130 0.00 0.00 0.00 3.18
2421 4005 7.657336 CATTAACCCAGATTGTACTTTGTGTT 58.343 34.615 0.00 0.00 0.00 3.32
2423 4007 6.071952 AGCATTAACCCAGATTGTACTTTGTG 60.072 38.462 0.00 0.00 0.00 3.33
2424 4008 6.010219 AGCATTAACCCAGATTGTACTTTGT 58.990 36.000 0.00 0.00 0.00 2.83
2425 4009 6.150976 TCAGCATTAACCCAGATTGTACTTTG 59.849 38.462 0.00 0.00 0.00 2.77
2426 4010 6.245408 TCAGCATTAACCCAGATTGTACTTT 58.755 36.000 0.00 0.00 0.00 2.66
2427 4011 5.815581 TCAGCATTAACCCAGATTGTACTT 58.184 37.500 0.00 0.00 0.00 2.24
2428 4012 5.431765 CTCAGCATTAACCCAGATTGTACT 58.568 41.667 0.00 0.00 0.00 2.73
2429 4013 4.576463 CCTCAGCATTAACCCAGATTGTAC 59.424 45.833 0.00 0.00 0.00 2.90
2431 4015 3.624777 CCTCAGCATTAACCCAGATTGT 58.375 45.455 0.00 0.00 0.00 2.71
2432 4016 2.954318 CCCTCAGCATTAACCCAGATTG 59.046 50.000 0.00 0.00 0.00 2.67
2433 4017 2.687914 GCCCTCAGCATTAACCCAGATT 60.688 50.000 0.00 0.00 42.97 2.40
2434 4018 1.133668 GCCCTCAGCATTAACCCAGAT 60.134 52.381 0.00 0.00 42.97 2.90
2436 4020 1.097547 CGCCCTCAGCATTAACCCAG 61.098 60.000 0.00 0.00 44.04 4.45
2437 4021 1.077787 CGCCCTCAGCATTAACCCA 60.078 57.895 0.00 0.00 44.04 4.51
2438 4022 2.481471 GCGCCCTCAGCATTAACCC 61.481 63.158 0.00 0.00 44.04 4.11
2439 4023 1.718757 CTGCGCCCTCAGCATTAACC 61.719 60.000 4.18 0.00 44.26 2.85
2440 4024 1.723870 CTGCGCCCTCAGCATTAAC 59.276 57.895 4.18 0.00 44.26 2.01
2447 4031 3.123620 GTTGAGCTGCGCCCTCAG 61.124 66.667 21.88 7.88 40.16 3.35
2448 4032 3.474486 TTGTTGAGCTGCGCCCTCA 62.474 57.895 19.98 19.98 37.54 3.86
2449 4033 2.669569 TTGTTGAGCTGCGCCCTC 60.670 61.111 15.82 15.82 0.00 4.30
2450 4034 2.670934 CTTGTTGAGCTGCGCCCT 60.671 61.111 4.18 0.00 0.00 5.19
2459 4043 3.799281 TTGTTTTCAGGGCTTGTTGAG 57.201 42.857 0.00 0.00 0.00 3.02
2460 4044 4.543590 TTTTGTTTTCAGGGCTTGTTGA 57.456 36.364 0.00 0.00 0.00 3.18
2480 4064 1.745232 TGTCTGTGCCTCGTGTTTTT 58.255 45.000 0.00 0.00 0.00 1.94
2481 4065 1.603802 CATGTCTGTGCCTCGTGTTTT 59.396 47.619 0.00 0.00 0.00 2.43
2482 4066 1.229428 CATGTCTGTGCCTCGTGTTT 58.771 50.000 0.00 0.00 0.00 2.83
2483 4067 1.230635 GCATGTCTGTGCCTCGTGTT 61.231 55.000 0.00 0.00 39.18 3.32
2484 4068 1.669115 GCATGTCTGTGCCTCGTGT 60.669 57.895 0.00 0.00 39.18 4.49
2485 4069 1.229975 TTGCATGTCTGTGCCTCGTG 61.230 55.000 0.00 0.00 44.43 4.35
2486 4070 0.952497 CTTGCATGTCTGTGCCTCGT 60.952 55.000 0.00 0.00 44.43 4.18
2487 4071 0.671472 TCTTGCATGTCTGTGCCTCG 60.671 55.000 0.00 0.00 44.43 4.63
2488 4072 1.669779 GATCTTGCATGTCTGTGCCTC 59.330 52.381 0.00 0.00 44.43 4.70
2489 4073 1.681166 GGATCTTGCATGTCTGTGCCT 60.681 52.381 0.00 0.00 44.43 4.75
2490 4074 0.737219 GGATCTTGCATGTCTGTGCC 59.263 55.000 0.00 0.00 44.43 5.01
2491 4075 0.737219 GGGATCTTGCATGTCTGTGC 59.263 55.000 0.00 0.00 45.25 4.57
2492 4076 2.118313 TGGGATCTTGCATGTCTGTG 57.882 50.000 0.00 0.00 0.00 3.66
2493 4077 2.306805 TCTTGGGATCTTGCATGTCTGT 59.693 45.455 0.00 0.00 0.00 3.41
2494 4078 2.995283 TCTTGGGATCTTGCATGTCTG 58.005 47.619 0.00 0.00 0.00 3.51
2495 4079 3.053842 ACATCTTGGGATCTTGCATGTCT 60.054 43.478 0.00 0.00 0.00 3.41
2496 4080 3.285484 ACATCTTGGGATCTTGCATGTC 58.715 45.455 0.00 0.00 0.00 3.06
2497 4081 3.377253 ACATCTTGGGATCTTGCATGT 57.623 42.857 0.00 0.00 0.00 3.21
2498 4082 4.321008 GCATACATCTTGGGATCTTGCATG 60.321 45.833 0.00 0.00 32.75 4.06
2499 4083 3.825014 GCATACATCTTGGGATCTTGCAT 59.175 43.478 0.00 0.00 32.75 3.96
2500 4084 3.216800 GCATACATCTTGGGATCTTGCA 58.783 45.455 0.00 0.00 32.75 4.08
2501 4085 3.216800 TGCATACATCTTGGGATCTTGC 58.783 45.455 0.00 0.00 32.93 4.01
2502 4086 6.401047 AAATGCATACATCTTGGGATCTTG 57.599 37.500 0.00 0.00 34.62 3.02
2503 4087 7.427989 AAAAATGCATACATCTTGGGATCTT 57.572 32.000 0.00 0.00 34.62 2.40
2504 4088 8.416329 GTTAAAAATGCATACATCTTGGGATCT 58.584 33.333 0.00 0.00 34.62 2.75
2505 4089 8.196771 TGTTAAAAATGCATACATCTTGGGATC 58.803 33.333 0.00 0.00 34.62 3.36
2506 4090 8.076910 TGTTAAAAATGCATACATCTTGGGAT 57.923 30.769 0.00 0.00 34.62 3.85
2507 4091 7.473735 TGTTAAAAATGCATACATCTTGGGA 57.526 32.000 0.00 0.00 34.62 4.37
2508 4092 8.034215 TCTTGTTAAAAATGCATACATCTTGGG 58.966 33.333 0.00 0.00 34.62 4.12
2509 4093 8.984891 TCTTGTTAAAAATGCATACATCTTGG 57.015 30.769 0.00 0.00 34.62 3.61
2513 4097 9.693157 GCAAATCTTGTTAAAAATGCATACATC 57.307 29.630 0.00 0.00 34.62 3.06
2537 4121 7.973388 GGTTGCAACTATTTAGATTTATGTGCA 59.027 33.333 27.64 0.00 0.00 4.57
2538 4122 7.435192 GGGTTGCAACTATTTAGATTTATGTGC 59.565 37.037 27.64 5.50 0.00 4.57
2544 4128 8.823220 ATAGTGGGTTGCAACTATTTAGATTT 57.177 30.769 27.64 6.77 36.43 2.17
2555 4139 7.121315 AGAGAAAAATAGATAGTGGGTTGCAAC 59.879 37.037 21.59 21.59 0.00 4.17
2558 4142 7.336931 TGAAGAGAAAAATAGATAGTGGGTTGC 59.663 37.037 0.00 0.00 0.00 4.17
2587 4172 0.039472 TGGTGGCATAGCATGGTTGT 59.961 50.000 1.12 0.00 0.00 3.32
2590 4175 0.332632 ACTTGGTGGCATAGCATGGT 59.667 50.000 1.62 1.62 36.53 3.55
2601 4186 2.679837 GACTACATGCATGACTTGGTGG 59.320 50.000 32.75 13.53 0.00 4.61
2661 4246 1.901591 CATGAGTTGACAAGGTGGCT 58.098 50.000 0.00 0.00 0.00 4.75
2670 4255 4.937620 TCTTAAGGTCATGCATGAGTTGAC 59.062 41.667 29.38 18.35 37.51 3.18
2671 4256 5.046376 TCTCTTAAGGTCATGCATGAGTTGA 60.046 40.000 29.38 19.53 37.51 3.18
2672 4257 5.181009 TCTCTTAAGGTCATGCATGAGTTG 58.819 41.667 29.38 15.53 37.51 3.16
2673 4258 5.426689 TCTCTTAAGGTCATGCATGAGTT 57.573 39.130 29.38 24.93 37.51 3.01
2674 4259 5.181748 GTTCTCTTAAGGTCATGCATGAGT 58.818 41.667 29.38 19.00 37.51 3.41
2675 4260 4.574013 GGTTCTCTTAAGGTCATGCATGAG 59.426 45.833 29.38 16.37 37.51 2.90
2678 4263 4.574674 TGGTTCTCTTAAGGTCATGCAT 57.425 40.909 1.85 0.00 0.00 3.96
2679 4264 4.202461 ACTTGGTTCTCTTAAGGTCATGCA 60.202 41.667 1.85 0.00 0.00 3.96
2693 4886 8.907222 AAAAATATTTTGCATGACTTGGTTCT 57.093 26.923 14.04 0.00 0.00 3.01
2744 4937 7.802720 GTGGGAATTTTGTTCAAAATGCATAAC 59.197 33.333 22.55 15.74 33.08 1.89
2756 4949 3.040099 CGTTGTCGTGGGAATTTTGTTC 58.960 45.455 0.00 0.00 0.00 3.18
2762 4955 3.249999 CGCGTTGTCGTGGGAATT 58.750 55.556 0.00 0.00 42.82 2.17
2785 4978 5.419788 ACTTGGTGATGTGACATTATTGCAT 59.580 36.000 0.00 0.00 0.00 3.96
2858 5054 5.106396 GGGCATGCATGAGTTGATAAGTATC 60.106 44.000 30.64 6.75 0.00 2.24
2859 5055 4.763793 GGGCATGCATGAGTTGATAAGTAT 59.236 41.667 30.64 0.00 0.00 2.12
2892 5088 5.391312 AGTATTTTGCATGACTTGGTTCC 57.609 39.130 0.00 0.00 0.00 3.62
2897 5093 3.731867 GCGGGAGTATTTTGCATGACTTG 60.732 47.826 0.00 0.00 0.00 3.16
2902 5098 1.745087 AGTGCGGGAGTATTTTGCATG 59.255 47.619 0.00 0.00 37.93 4.06
2903 5099 2.128771 AGTGCGGGAGTATTTTGCAT 57.871 45.000 0.00 0.00 37.93 3.96
2904 5100 2.027561 AGTAGTGCGGGAGTATTTTGCA 60.028 45.455 0.00 0.00 0.00 4.08
2905 5101 2.629051 AGTAGTGCGGGAGTATTTTGC 58.371 47.619 0.00 0.00 0.00 3.68
2906 5102 5.622770 AAAAGTAGTGCGGGAGTATTTTG 57.377 39.130 5.79 0.00 0.00 2.44
2907 5103 5.533528 ACAAAAAGTAGTGCGGGAGTATTTT 59.466 36.000 0.12 0.12 0.00 1.82
2908 5104 5.067954 ACAAAAAGTAGTGCGGGAGTATTT 58.932 37.500 0.00 0.00 0.00 1.40
2909 5105 4.648651 ACAAAAAGTAGTGCGGGAGTATT 58.351 39.130 0.00 0.00 0.00 1.89
2910 5106 4.281898 ACAAAAAGTAGTGCGGGAGTAT 57.718 40.909 0.00 0.00 0.00 2.12
2911 5107 3.756933 ACAAAAAGTAGTGCGGGAGTA 57.243 42.857 0.00 0.00 0.00 2.59
2912 5108 2.632987 ACAAAAAGTAGTGCGGGAGT 57.367 45.000 0.00 0.00 0.00 3.85
2913 5109 3.982576 AAACAAAAAGTAGTGCGGGAG 57.017 42.857 0.00 0.00 0.00 4.30
2914 5110 6.394025 AAATAAACAAAAAGTAGTGCGGGA 57.606 33.333 0.00 0.00 0.00 5.14
2915 5111 6.307077 GCTAAATAAACAAAAAGTAGTGCGGG 59.693 38.462 0.00 0.00 0.00 6.13
2916 5112 6.858993 TGCTAAATAAACAAAAAGTAGTGCGG 59.141 34.615 0.00 0.00 0.00 5.69
2917 5113 7.845617 TGCTAAATAAACAAAAAGTAGTGCG 57.154 32.000 0.00 0.00 0.00 5.34
2940 5136 9.692749 ATCTTGCTAGAAATGCATAAATGAATG 57.307 29.630 0.00 0.00 40.34 2.67
2942 5138 9.740239 GAATCTTGCTAGAAATGCATAAATGAA 57.260 29.630 0.00 0.00 40.34 2.57
2943 5139 9.128404 AGAATCTTGCTAGAAATGCATAAATGA 57.872 29.630 0.00 0.00 40.34 2.57
2944 5140 9.395707 GAGAATCTTGCTAGAAATGCATAAATG 57.604 33.333 0.00 0.00 40.34 2.32
2945 5141 8.288208 CGAGAATCTTGCTAGAAATGCATAAAT 58.712 33.333 0.00 0.00 40.34 1.40
2946 5142 7.633621 CGAGAATCTTGCTAGAAATGCATAAA 58.366 34.615 0.00 0.00 40.34 1.40
2947 5143 6.293081 GCGAGAATCTTGCTAGAAATGCATAA 60.293 38.462 14.96 0.00 40.34 1.90
2948 5144 5.178252 GCGAGAATCTTGCTAGAAATGCATA 59.822 40.000 14.96 0.00 40.34 3.14
2949 5145 4.024218 GCGAGAATCTTGCTAGAAATGCAT 60.024 41.667 14.96 0.00 40.34 3.96
2950 5146 3.310774 GCGAGAATCTTGCTAGAAATGCA 59.689 43.478 14.96 0.00 37.84 3.96
2951 5147 3.603401 CGCGAGAATCTTGCTAGAAATGC 60.603 47.826 19.24 2.12 38.64 3.56
2952 5148 3.060003 CCGCGAGAATCTTGCTAGAAATG 60.060 47.826 19.24 3.06 38.64 2.32
2953 5149 3.126831 CCGCGAGAATCTTGCTAGAAAT 58.873 45.455 19.24 0.00 38.64 2.17
2954 5150 2.540515 CCGCGAGAATCTTGCTAGAAA 58.459 47.619 19.24 0.00 38.64 2.52
2955 5151 1.802880 GCCGCGAGAATCTTGCTAGAA 60.803 52.381 19.24 0.00 38.64 2.10
2956 5152 0.249073 GCCGCGAGAATCTTGCTAGA 60.249 55.000 19.24 0.00 38.64 2.43
2957 5153 0.528466 TGCCGCGAGAATCTTGCTAG 60.528 55.000 19.24 11.91 38.64 3.42
2958 5154 0.108377 TTGCCGCGAGAATCTTGCTA 60.108 50.000 19.24 4.22 38.64 3.49
2959 5155 0.745845 ATTGCCGCGAGAATCTTGCT 60.746 50.000 19.24 0.00 38.64 3.91
2960 5156 0.590732 CATTGCCGCGAGAATCTTGC 60.591 55.000 8.23 12.38 37.51 4.01
2961 5157 0.729116 ACATTGCCGCGAGAATCTTG 59.271 50.000 8.23 0.00 0.00 3.02
2962 5158 0.729116 CACATTGCCGCGAGAATCTT 59.271 50.000 8.23 0.00 0.00 2.40
2963 5159 0.391661 ACACATTGCCGCGAGAATCT 60.392 50.000 8.23 0.00 0.00 2.40
2964 5160 0.247814 CACACATTGCCGCGAGAATC 60.248 55.000 8.23 0.00 0.00 2.52
2965 5161 1.647545 CCACACATTGCCGCGAGAAT 61.648 55.000 8.23 1.54 0.00 2.40
2966 5162 2.324330 CCACACATTGCCGCGAGAA 61.324 57.895 8.23 0.00 0.00 2.87
2967 5163 2.741985 CCACACATTGCCGCGAGA 60.742 61.111 8.23 0.00 0.00 4.04
2968 5164 3.803082 CCCACACATTGCCGCGAG 61.803 66.667 8.23 0.00 0.00 5.03
2971 5167 2.360600 TACCCCACACATTGCCGC 60.361 61.111 0.00 0.00 0.00 6.53
2972 5168 2.043980 GGTACCCCACACATTGCCG 61.044 63.158 0.00 0.00 0.00 5.69
2973 5169 0.324275 ATGGTACCCCACACATTGCC 60.324 55.000 10.07 0.00 45.65 4.52
2974 5170 1.102978 GATGGTACCCCACACATTGC 58.897 55.000 10.07 0.00 45.65 3.56
2975 5171 2.806945 AGATGGTACCCCACACATTG 57.193 50.000 10.07 0.00 45.65 2.82
2976 5172 3.460825 ACTAGATGGTACCCCACACATT 58.539 45.455 10.07 0.00 45.65 2.71
2977 5173 3.130734 ACTAGATGGTACCCCACACAT 57.869 47.619 10.07 0.00 45.65 3.21
2978 5174 2.634639 ACTAGATGGTACCCCACACA 57.365 50.000 10.07 0.00 45.65 3.72
2979 5175 6.930068 ATATTACTAGATGGTACCCCACAC 57.070 41.667 10.07 0.00 45.65 3.82
2995 5191 9.749996 ACATGGGGGATGATCTAATATATTACT 57.250 33.333 0.81 0.00 35.80 2.24
2997 5193 9.742661 TGACATGGGGGATGATCTAATATATTA 57.257 33.333 5.10 5.10 35.80 0.98
2998 5194 8.642964 TGACATGGGGGATGATCTAATATATT 57.357 34.615 2.97 2.97 35.80 1.28
2999 5195 8.497745 GTTGACATGGGGGATGATCTAATATAT 58.502 37.037 0.00 0.00 35.80 0.86
3000 5196 7.460722 TGTTGACATGGGGGATGATCTAATATA 59.539 37.037 0.00 0.00 35.80 0.86
3001 5197 6.275381 TGTTGACATGGGGGATGATCTAATAT 59.725 38.462 0.00 0.00 35.80 1.28
3002 5198 5.610557 TGTTGACATGGGGGATGATCTAATA 59.389 40.000 0.00 0.00 35.80 0.98
3003 5199 4.416513 TGTTGACATGGGGGATGATCTAAT 59.583 41.667 0.00 0.00 35.80 1.73
3004 5200 3.785325 TGTTGACATGGGGGATGATCTAA 59.215 43.478 0.00 0.00 35.80 2.10
3005 5201 3.392730 TGTTGACATGGGGGATGATCTA 58.607 45.455 0.00 0.00 35.80 1.98
3006 5202 2.207988 TGTTGACATGGGGGATGATCT 58.792 47.619 0.00 0.00 35.80 2.75
3007 5203 2.734755 TGTTGACATGGGGGATGATC 57.265 50.000 0.00 0.00 35.80 2.92
3008 5204 5.343833 AATATGTTGACATGGGGGATGAT 57.656 39.130 6.87 0.00 37.15 2.45
3009 5205 4.812403 AATATGTTGACATGGGGGATGA 57.188 40.909 6.87 0.00 37.15 2.92
3010 5206 5.874897 AAAATATGTTGACATGGGGGATG 57.125 39.130 6.87 0.00 37.15 3.51
3052 5248 6.750148 TCGGCTATTTTAGAAAAGCCAAAAA 58.250 32.000 14.91 0.00 38.46 1.94
3053 5249 6.334102 TCGGCTATTTTAGAAAAGCCAAAA 57.666 33.333 14.91 1.49 38.46 2.44
3054 5250 5.968528 TCGGCTATTTTAGAAAAGCCAAA 57.031 34.783 14.91 3.38 38.46 3.28
3055 5251 5.336134 GGTTCGGCTATTTTAGAAAAGCCAA 60.336 40.000 14.91 7.85 38.46 4.52
3056 5252 4.157105 GGTTCGGCTATTTTAGAAAAGCCA 59.843 41.667 14.91 3.51 38.46 4.75
3057 5253 4.157105 TGGTTCGGCTATTTTAGAAAAGCC 59.843 41.667 7.41 7.41 36.45 4.35
3058 5254 5.305139 TGGTTCGGCTATTTTAGAAAAGC 57.695 39.130 0.00 0.00 0.00 3.51
3059 5255 6.747280 CACATGGTTCGGCTATTTTAGAAAAG 59.253 38.462 0.00 0.00 0.00 2.27
3060 5256 6.431543 TCACATGGTTCGGCTATTTTAGAAAA 59.568 34.615 0.00 0.00 0.00 2.29
3061 5257 5.941058 TCACATGGTTCGGCTATTTTAGAAA 59.059 36.000 0.00 0.00 0.00 2.52
3062 5258 5.492895 TCACATGGTTCGGCTATTTTAGAA 58.507 37.500 0.00 0.00 0.00 2.10
3063 5259 5.092554 TCACATGGTTCGGCTATTTTAGA 57.907 39.130 0.00 0.00 0.00 2.10
3064 5260 5.811399 TTCACATGGTTCGGCTATTTTAG 57.189 39.130 0.00 0.00 0.00 1.85
3065 5261 6.576662 TTTTCACATGGTTCGGCTATTTTA 57.423 33.333 0.00 0.00 0.00 1.52
3066 5262 5.461032 TTTTCACATGGTTCGGCTATTTT 57.539 34.783 0.00 0.00 0.00 1.82
3067 5263 5.659440 ATTTTCACATGGTTCGGCTATTT 57.341 34.783 0.00 0.00 0.00 1.40
3068 5264 6.959639 ATATTTTCACATGGTTCGGCTATT 57.040 33.333 0.00 0.00 0.00 1.73
3069 5265 6.959639 AATATTTTCACATGGTTCGGCTAT 57.040 33.333 0.00 0.00 0.00 2.97
3070 5266 8.458573 AATAATATTTTCACATGGTTCGGCTA 57.541 30.769 0.00 0.00 0.00 3.93
3071 5267 6.959639 ATAATATTTTCACATGGTTCGGCT 57.040 33.333 0.00 0.00 0.00 5.52
3072 5268 8.132362 TGTAATAATATTTTCACATGGTTCGGC 58.868 33.333 0.00 0.00 0.00 5.54
3096 5292 9.793252 GTTTTTCAGTGAAAGATATATGCATGT 57.207 29.630 17.36 5.06 32.93 3.21
3099 5295 9.230122 TGAGTTTTTCAGTGAAAGATATATGCA 57.770 29.630 17.36 7.43 32.93 3.96
3106 5302 9.874205 TGATTTTTGAGTTTTTCAGTGAAAGAT 57.126 25.926 17.36 8.40 37.07 2.40
3107 5303 9.874205 ATGATTTTTGAGTTTTTCAGTGAAAGA 57.126 25.926 17.36 11.29 37.07 2.52
3109 5305 8.806634 CGATGATTTTTGAGTTTTTCAGTGAAA 58.193 29.630 14.35 14.35 37.07 2.69
3110 5306 8.187480 TCGATGATTTTTGAGTTTTTCAGTGAA 58.813 29.630 0.08 0.08 37.07 3.18
3111 5307 7.702386 TCGATGATTTTTGAGTTTTTCAGTGA 58.298 30.769 0.00 0.00 37.07 3.41
3112 5308 7.912949 TCGATGATTTTTGAGTTTTTCAGTG 57.087 32.000 0.00 0.00 37.07 3.66
3113 5309 7.168135 GCTTCGATGATTTTTGAGTTTTTCAGT 59.832 33.333 1.89 0.00 37.07 3.41
3114 5310 7.380602 AGCTTCGATGATTTTTGAGTTTTTCAG 59.619 33.333 1.89 0.00 37.07 3.02
3115 5311 7.167968 CAGCTTCGATGATTTTTGAGTTTTTCA 59.832 33.333 1.89 0.00 0.00 2.69
3116 5312 7.358683 CCAGCTTCGATGATTTTTGAGTTTTTC 60.359 37.037 1.89 0.00 0.00 2.29
3117 5313 6.421801 CCAGCTTCGATGATTTTTGAGTTTTT 59.578 34.615 1.89 0.00 0.00 1.94
3118 5314 5.922544 CCAGCTTCGATGATTTTTGAGTTTT 59.077 36.000 1.89 0.00 0.00 2.43
3119 5315 5.464168 CCAGCTTCGATGATTTTTGAGTTT 58.536 37.500 1.89 0.00 0.00 2.66
3120 5316 4.082571 CCCAGCTTCGATGATTTTTGAGTT 60.083 41.667 1.89 0.00 0.00 3.01
3121 5317 3.441572 CCCAGCTTCGATGATTTTTGAGT 59.558 43.478 1.89 0.00 0.00 3.41
3122 5318 3.441572 ACCCAGCTTCGATGATTTTTGAG 59.558 43.478 1.89 0.00 0.00 3.02
3123 5319 3.420893 ACCCAGCTTCGATGATTTTTGA 58.579 40.909 1.89 0.00 0.00 2.69
3124 5320 3.855689 ACCCAGCTTCGATGATTTTTG 57.144 42.857 1.89 0.00 0.00 2.44
3125 5321 4.871933 AAACCCAGCTTCGATGATTTTT 57.128 36.364 1.89 0.00 0.00 1.94
3126 5322 4.871933 AAAACCCAGCTTCGATGATTTT 57.128 36.364 1.89 0.00 0.00 1.82
3127 5323 5.010282 ACTAAAACCCAGCTTCGATGATTT 58.990 37.500 1.89 0.00 0.00 2.17
3128 5324 4.396166 CACTAAAACCCAGCTTCGATGATT 59.604 41.667 1.89 0.00 0.00 2.57
3129 5325 3.941483 CACTAAAACCCAGCTTCGATGAT 59.059 43.478 1.89 0.00 0.00 2.45
3130 5326 3.244422 ACACTAAAACCCAGCTTCGATGA 60.244 43.478 1.89 0.00 0.00 2.92
3131 5327 3.074412 ACACTAAAACCCAGCTTCGATG 58.926 45.455 0.00 0.00 0.00 3.84
3132 5328 3.418684 ACACTAAAACCCAGCTTCGAT 57.581 42.857 0.00 0.00 0.00 3.59
3133 5329 2.922740 ACACTAAAACCCAGCTTCGA 57.077 45.000 0.00 0.00 0.00 3.71
3134 5330 3.139077 AGAACACTAAAACCCAGCTTCG 58.861 45.455 0.00 0.00 0.00 3.79
3135 5331 6.436261 GTTTAGAACACTAAAACCCAGCTTC 58.564 40.000 0.00 0.00 37.69 3.86
3136 5332 5.301045 GGTTTAGAACACTAAAACCCAGCTT 59.699 40.000 5.13 0.00 37.65 3.74
3137 5333 4.825634 GGTTTAGAACACTAAAACCCAGCT 59.174 41.667 5.13 0.00 37.65 4.24
3138 5334 4.825634 AGGTTTAGAACACTAAAACCCAGC 59.174 41.667 11.52 0.00 41.80 4.85
3139 5335 6.296803 AGAGGTTTAGAACACTAAAACCCAG 58.703 40.000 11.52 0.00 41.80 4.45
3140 5336 6.256643 AGAGGTTTAGAACACTAAAACCCA 57.743 37.500 11.52 0.00 41.80 4.51
3141 5337 7.067859 ACAAAGAGGTTTAGAACACTAAAACCC 59.932 37.037 11.52 7.39 41.80 4.11
3142 5338 7.993101 ACAAAGAGGTTTAGAACACTAAAACC 58.007 34.615 12.24 7.90 41.80 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.