Multiple sequence alignment - TraesCS5B01G225900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G225900 chr5B 100.000 1832 0 0 805 2636 402732358 402730527 0.000000e+00 3384
1 TraesCS5B01G225900 chr5B 84.022 1840 272 17 805 2632 401136347 401138176 0.000000e+00 1749
2 TraesCS5B01G225900 chr5B 100.000 560 0 0 1 560 402733162 402732603 0.000000e+00 1035
3 TraesCS5B01G225900 chr5B 91.667 120 10 0 430 549 611694401 611694282 1.620000e-37 167
4 TraesCS5B01G225900 chr4A 92.496 1839 128 9 805 2636 19451294 19453129 0.000000e+00 2623
5 TraesCS5B01G225900 chr4A 94.697 132 6 1 430 560 19451097 19451228 1.240000e-48 204
6 TraesCS5B01G225900 chr4A 94.382 89 3 1 340 428 676242347 676242433 4.580000e-28 135
7 TraesCS5B01G225900 chr1D 89.663 1838 180 9 805 2636 75890607 75888774 0.000000e+00 2333
8 TraesCS5B01G225900 chr1D 93.893 131 8 0 429 559 75890806 75890676 5.750000e-47 198
9 TraesCS5B01G225900 chr2A 87.983 1839 211 9 805 2636 90588877 90587042 0.000000e+00 2163
10 TraesCS5B01G225900 chr2A 93.130 131 9 0 430 560 90589081 90588951 2.680000e-45 193
11 TraesCS5B01G225900 chr1B 86.525 1833 237 9 809 2634 679608217 679606388 0.000000e+00 2008
12 TraesCS5B01G225900 chr1B 90.152 132 12 1 430 560 679608426 679608295 1.250000e-38 171
13 TraesCS5B01G225900 chr7A 85.940 1835 248 9 805 2632 734911152 734912983 0.000000e+00 1951
14 TraesCS5B01G225900 chr2B 85.637 1838 247 12 805 2632 654524895 654523065 0.000000e+00 1916
15 TraesCS5B01G225900 chr2B 91.667 132 10 1 430 560 654525094 654524963 5.800000e-42 182
16 TraesCS5B01G225900 chr3B 84.905 1835 262 11 806 2632 714971674 714973501 0.000000e+00 1840
17 TraesCS5B01G225900 chr3B 89.844 128 13 0 430 557 714971474 714971601 5.840000e-37 165
18 TraesCS5B01G225900 chr5D 88.497 1504 165 6 1139 2636 445659918 445658417 0.000000e+00 1812
19 TraesCS5B01G225900 chr5D 86.744 347 15 4 1 342 342693127 342692807 8.970000e-95 357
20 TraesCS5B01G225900 chr5D 90.400 125 12 0 436 560 445692559 445692435 5.840000e-37 165
21 TraesCS5B01G225900 chr5A 91.743 218 7 3 1 218 443718625 443718419 2.570000e-75 292
22 TraesCS5B01G225900 chr5A 92.405 79 6 0 262 340 443718413 443718335 2.140000e-21 113
23 TraesCS5B01G225900 chr7B 91.667 132 10 1 430 560 687054502 687054371 5.800000e-42 182
24 TraesCS5B01G225900 chr2D 98.851 87 1 0 342 428 398353421 398353507 3.510000e-34 156
25 TraesCS5B01G225900 chr2D 97.753 89 2 0 340 428 20073586 20073674 1.260000e-33 154
26 TraesCS5B01G225900 chr2D 94.382 89 1 1 340 428 109709109 109709193 1.650000e-27 134
27 TraesCS5B01G225900 chrUn 96.512 86 3 0 343 428 35412574 35412659 2.730000e-30 143
28 TraesCS5B01G225900 chr4D 96.552 87 2 1 343 428 438218267 438218181 2.730000e-30 143
29 TraesCS5B01G225900 chr3D 96.512 86 1 1 343 428 250906937 250907020 9.840000e-30 141
30 TraesCS5B01G225900 chr3D 90.909 99 4 2 330 428 209459060 209459153 7.660000e-26 128
31 TraesCS5B01G225900 chr3A 96.471 85 1 1 343 427 1025158 1025240 3.540000e-29 139
32 TraesCS5B01G225900 chr6B 90.000 100 4 3 330 428 631431416 631431322 9.910000e-25 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G225900 chr5B 402730527 402733162 2635 True 2209.5 3384 100.0000 1 2636 2 chr5B.!!$R2 2635
1 TraesCS5B01G225900 chr5B 401136347 401138176 1829 False 1749.0 1749 84.0220 805 2632 1 chr5B.!!$F1 1827
2 TraesCS5B01G225900 chr4A 19451097 19453129 2032 False 1413.5 2623 93.5965 430 2636 2 chr4A.!!$F2 2206
3 TraesCS5B01G225900 chr1D 75888774 75890806 2032 True 1265.5 2333 91.7780 429 2636 2 chr1D.!!$R1 2207
4 TraesCS5B01G225900 chr2A 90587042 90589081 2039 True 1178.0 2163 90.5565 430 2636 2 chr2A.!!$R1 2206
5 TraesCS5B01G225900 chr1B 679606388 679608426 2038 True 1089.5 2008 88.3385 430 2634 2 chr1B.!!$R1 2204
6 TraesCS5B01G225900 chr7A 734911152 734912983 1831 False 1951.0 1951 85.9400 805 2632 1 chr7A.!!$F1 1827
7 TraesCS5B01G225900 chr2B 654523065 654525094 2029 True 1049.0 1916 88.6520 430 2632 2 chr2B.!!$R1 2202
8 TraesCS5B01G225900 chr3B 714971474 714973501 2027 False 1002.5 1840 87.3745 430 2632 2 chr3B.!!$F1 2202
9 TraesCS5B01G225900 chr5D 445658417 445659918 1501 True 1812.0 1812 88.4970 1139 2636 1 chr5D.!!$R2 1497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
246 247 0.035439 TTTGGGAGAGCCGATGAACC 60.035 55.0 0.0 0.0 33.83 3.62 F
277 278 0.037326 ACACAGATCGCCATTGTCGT 60.037 50.0 0.0 0.0 0.00 4.34 F
423 424 0.251922 TAGGTACAAGGGGTGCGACT 60.252 55.0 0.0 0.0 32.16 4.18 F
1398 1406 0.326522 TGCAGGAGGCCCTAATGAGA 60.327 55.0 0.0 0.0 42.02 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1387 1395 0.183492 TGCACCCATCTCATTAGGGC 59.817 55.0 0.00 0.0 46.88 5.19 R
1474 1482 1.388837 AACCGGCCACACAAGAAACC 61.389 55.0 0.00 0.0 0.00 3.27 R
1492 1501 1.927487 AAAGCATCTGCATGACCCAA 58.073 45.0 4.79 0.0 45.16 4.12 R
2319 2331 2.104281 GGTCGCTACCCACATTCCTTAT 59.896 50.0 0.00 0.0 40.21 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.751175 TGTGGAAGGAAAAGTTAGATGCG 59.249 43.478 0.00 0.00 0.00 4.73
23 24 3.751698 GTGGAAGGAAAAGTTAGATGCGT 59.248 43.478 0.00 0.00 0.00 5.24
24 25 3.751175 TGGAAGGAAAAGTTAGATGCGTG 59.249 43.478 0.00 0.00 0.00 5.34
25 26 3.127030 GGAAGGAAAAGTTAGATGCGTGG 59.873 47.826 0.00 0.00 0.00 4.94
26 27 2.711542 AGGAAAAGTTAGATGCGTGGG 58.288 47.619 0.00 0.00 0.00 4.61
27 28 1.132453 GGAAAAGTTAGATGCGTGGGC 59.868 52.381 0.00 0.00 40.52 5.36
28 29 2.084546 GAAAAGTTAGATGCGTGGGCT 58.915 47.619 0.00 0.00 40.82 5.19
29 30 1.453155 AAAGTTAGATGCGTGGGCTG 58.547 50.000 0.00 0.00 40.82 4.85
30 31 1.026718 AAGTTAGATGCGTGGGCTGC 61.027 55.000 0.00 0.00 40.82 5.25
31 32 1.450312 GTTAGATGCGTGGGCTGCT 60.450 57.895 0.00 0.00 40.82 4.24
32 33 1.026718 GTTAGATGCGTGGGCTGCTT 61.027 55.000 0.00 0.00 40.82 3.91
33 34 1.026182 TTAGATGCGTGGGCTGCTTG 61.026 55.000 0.00 0.00 40.82 4.01
34 35 2.874648 TAGATGCGTGGGCTGCTTGG 62.875 60.000 0.00 0.00 40.82 3.61
35 36 4.349503 ATGCGTGGGCTGCTTGGA 62.350 61.111 0.00 0.00 40.82 3.53
38 39 4.335647 CGTGGGCTGCTTGGACCT 62.336 66.667 0.00 0.00 34.90 3.85
39 40 2.674380 GTGGGCTGCTTGGACCTG 60.674 66.667 0.00 0.00 34.90 4.00
40 41 4.666253 TGGGCTGCTTGGACCTGC 62.666 66.667 0.00 0.00 34.90 4.85
42 43 4.357279 GGCTGCTTGGACCTGCCT 62.357 66.667 0.00 0.00 42.13 4.75
43 44 3.060615 GCTGCTTGGACCTGCCTG 61.061 66.667 7.42 2.95 37.63 4.85
44 45 3.060615 CTGCTTGGACCTGCCTGC 61.061 66.667 7.42 0.00 37.63 4.85
45 46 4.666253 TGCTTGGACCTGCCTGCC 62.666 66.667 7.42 0.00 36.48 4.85
46 47 4.357279 GCTTGGACCTGCCTGCCT 62.357 66.667 0.00 0.00 37.63 4.75
47 48 2.045536 CTTGGACCTGCCTGCCTC 60.046 66.667 0.00 0.00 37.63 4.70
48 49 3.965539 CTTGGACCTGCCTGCCTCG 62.966 68.421 0.00 0.00 37.63 4.63
50 51 4.459089 GGACCTGCCTGCCTCGAC 62.459 72.222 0.00 0.00 0.00 4.20
51 52 3.695606 GACCTGCCTGCCTCGACA 61.696 66.667 0.00 0.00 0.00 4.35
52 53 3.655810 GACCTGCCTGCCTCGACAG 62.656 68.421 0.00 0.00 37.42 3.51
60 61 2.202878 GCCTCGACAGCGGCATAA 60.203 61.111 8.45 0.00 46.98 1.90
61 62 1.813753 GCCTCGACAGCGGCATAAA 60.814 57.895 8.45 0.00 46.98 1.40
62 63 1.366111 GCCTCGACAGCGGCATAAAA 61.366 55.000 8.45 0.00 46.98 1.52
63 64 1.083489 CCTCGACAGCGGCATAAAAA 58.917 50.000 1.45 0.00 38.28 1.94
64 65 1.062587 CCTCGACAGCGGCATAAAAAG 59.937 52.381 1.45 0.00 38.28 2.27
65 66 1.062587 CTCGACAGCGGCATAAAAAGG 59.937 52.381 1.45 0.00 38.28 3.11
66 67 0.098728 CGACAGCGGCATAAAAAGGG 59.901 55.000 1.45 0.00 0.00 3.95
67 68 0.455815 GACAGCGGCATAAAAAGGGG 59.544 55.000 1.45 0.00 0.00 4.79
68 69 1.141665 CAGCGGCATAAAAAGGGGC 59.858 57.895 1.45 0.00 0.00 5.80
69 70 1.304879 AGCGGCATAAAAAGGGGCA 60.305 52.632 1.45 0.00 0.00 5.36
70 71 1.141665 GCGGCATAAAAAGGGGCAG 59.858 57.895 0.00 0.00 0.00 4.85
71 72 1.141665 CGGCATAAAAAGGGGCAGC 59.858 57.895 0.00 0.00 0.00 5.25
72 73 1.603236 CGGCATAAAAAGGGGCAGCA 61.603 55.000 0.00 0.00 0.00 4.41
73 74 0.108186 GGCATAAAAAGGGGCAGCAC 60.108 55.000 0.00 0.00 0.00 4.40
74 75 0.458370 GCATAAAAAGGGGCAGCACG 60.458 55.000 0.00 0.00 0.00 5.34
75 76 1.173043 CATAAAAAGGGGCAGCACGA 58.827 50.000 0.00 0.00 0.00 4.35
76 77 1.135402 CATAAAAAGGGGCAGCACGAC 60.135 52.381 0.00 0.00 0.00 4.34
77 78 0.179015 TAAAAAGGGGCAGCACGACA 60.179 50.000 0.00 0.00 0.00 4.35
78 79 1.455383 AAAAAGGGGCAGCACGACAG 61.455 55.000 0.00 0.00 0.00 3.51
82 83 3.058160 GGGCAGCACGACAGCAAT 61.058 61.111 0.00 0.00 36.85 3.56
83 84 2.629656 GGGCAGCACGACAGCAATT 61.630 57.895 0.00 0.00 36.85 2.32
84 85 1.305219 GGGCAGCACGACAGCAATTA 61.305 55.000 0.00 0.00 36.85 1.40
85 86 0.734889 GGCAGCACGACAGCAATTAT 59.265 50.000 0.00 0.00 36.85 1.28
86 87 1.939934 GGCAGCACGACAGCAATTATA 59.060 47.619 0.00 0.00 36.85 0.98
87 88 2.032549 GGCAGCACGACAGCAATTATAG 60.033 50.000 0.00 0.00 36.85 1.31
88 89 2.600792 GCAGCACGACAGCAATTATAGC 60.601 50.000 0.00 0.00 36.85 2.97
89 90 2.609002 CAGCACGACAGCAATTATAGCA 59.391 45.455 0.00 0.00 36.85 3.49
90 91 2.868583 AGCACGACAGCAATTATAGCAG 59.131 45.455 0.00 0.00 36.85 4.24
91 92 2.609459 GCACGACAGCAATTATAGCAGT 59.391 45.455 0.00 0.00 34.25 4.40
92 93 3.802139 GCACGACAGCAATTATAGCAGTA 59.198 43.478 0.00 0.00 31.56 2.74
93 94 4.270084 GCACGACAGCAATTATAGCAGTAA 59.730 41.667 0.00 0.00 31.56 2.24
94 95 5.050091 GCACGACAGCAATTATAGCAGTAAT 60.050 40.000 0.00 0.00 31.56 1.89
95 96 6.511767 GCACGACAGCAATTATAGCAGTAATT 60.512 38.462 0.00 1.75 35.27 1.40
96 97 7.065894 CACGACAGCAATTATAGCAGTAATTC 58.934 38.462 0.00 1.65 33.24 2.17
97 98 6.074302 ACGACAGCAATTATAGCAGTAATTCG 60.074 38.462 0.00 6.86 33.24 3.34
98 99 5.990408 ACAGCAATTATAGCAGTAATTCGC 58.010 37.500 13.69 13.69 33.24 4.70
99 100 5.760253 ACAGCAATTATAGCAGTAATTCGCT 59.240 36.000 16.00 16.00 42.34 4.93
100 101 6.075918 CAGCAATTATAGCAGTAATTCGCTG 58.924 40.000 23.46 23.46 39.30 5.18
101 102 5.991606 AGCAATTATAGCAGTAATTCGCTGA 59.008 36.000 18.38 0.00 39.30 4.26
102 103 6.146837 AGCAATTATAGCAGTAATTCGCTGAG 59.853 38.462 18.38 6.32 39.30 3.35
103 104 6.146184 GCAATTATAGCAGTAATTCGCTGAGA 59.854 38.462 12.46 1.95 39.30 3.27
104 105 7.148507 GCAATTATAGCAGTAATTCGCTGAGAT 60.149 37.037 12.46 7.68 39.30 2.75
105 106 9.358872 CAATTATAGCAGTAATTCGCTGAGATA 57.641 33.333 12.46 6.96 39.30 1.98
106 107 8.918961 ATTATAGCAGTAATTCGCTGAGATAC 57.081 34.615 12.46 0.00 39.30 2.24
107 108 4.655762 AGCAGTAATTCGCTGAGATACA 57.344 40.909 12.46 0.00 37.02 2.29
108 109 4.363999 AGCAGTAATTCGCTGAGATACAC 58.636 43.478 12.46 0.00 37.02 2.90
109 110 4.112634 GCAGTAATTCGCTGAGATACACA 58.887 43.478 12.46 0.00 36.12 3.72
110 111 4.026475 GCAGTAATTCGCTGAGATACACAC 60.026 45.833 12.46 0.00 36.12 3.82
111 112 5.344066 CAGTAATTCGCTGAGATACACACT 58.656 41.667 4.46 0.00 36.12 3.55
112 113 6.495706 CAGTAATTCGCTGAGATACACACTA 58.504 40.000 4.46 0.00 36.12 2.74
113 114 7.142021 CAGTAATTCGCTGAGATACACACTAT 58.858 38.462 4.46 0.00 36.12 2.12
114 115 7.114106 CAGTAATTCGCTGAGATACACACTATG 59.886 40.741 4.46 0.00 36.12 2.23
115 116 5.774498 ATTCGCTGAGATACACACTATGA 57.226 39.130 0.00 0.00 0.00 2.15
116 117 5.576447 TTCGCTGAGATACACACTATGAA 57.424 39.130 0.00 0.00 0.00 2.57
117 118 5.774498 TCGCTGAGATACACACTATGAAT 57.226 39.130 0.00 0.00 0.00 2.57
118 119 6.877611 TCGCTGAGATACACACTATGAATA 57.122 37.500 0.00 0.00 0.00 1.75
119 120 6.903419 TCGCTGAGATACACACTATGAATAG 58.097 40.000 0.00 0.00 36.46 1.73
120 121 5.570973 CGCTGAGATACACACTATGAATAGC 59.429 44.000 0.00 0.00 33.68 2.97
121 122 6.569418 CGCTGAGATACACACTATGAATAGCT 60.569 42.308 0.00 0.00 33.68 3.32
122 123 6.806249 GCTGAGATACACACTATGAATAGCTC 59.194 42.308 0.00 0.00 33.68 4.09
123 124 7.309133 GCTGAGATACACACTATGAATAGCTCT 60.309 40.741 0.00 0.00 33.68 4.09
124 125 9.225436 CTGAGATACACACTATGAATAGCTCTA 57.775 37.037 0.00 0.00 33.68 2.43
125 126 9.225436 TGAGATACACACTATGAATAGCTCTAG 57.775 37.037 0.00 0.00 33.68 2.43
126 127 8.050778 AGATACACACTATGAATAGCTCTAGC 57.949 38.462 0.00 0.00 42.49 3.42
127 128 5.461032 ACACACTATGAATAGCTCTAGCC 57.539 43.478 0.00 0.00 43.38 3.93
128 129 4.895889 ACACACTATGAATAGCTCTAGCCA 59.104 41.667 0.00 0.00 43.38 4.75
129 130 5.010516 ACACACTATGAATAGCTCTAGCCAG 59.989 44.000 0.00 0.00 43.38 4.85
130 131 4.021544 ACACTATGAATAGCTCTAGCCAGC 60.022 45.833 0.00 0.00 43.38 4.85
131 132 3.513515 ACTATGAATAGCTCTAGCCAGCC 59.486 47.826 0.00 0.00 43.38 4.85
132 133 1.793414 TGAATAGCTCTAGCCAGCCA 58.207 50.000 0.00 0.00 43.38 4.75
133 134 1.690893 TGAATAGCTCTAGCCAGCCAG 59.309 52.381 0.00 0.00 43.38 4.85
134 135 0.396060 AATAGCTCTAGCCAGCCAGC 59.604 55.000 0.00 0.00 43.38 4.85
135 136 1.479368 ATAGCTCTAGCCAGCCAGCC 61.479 60.000 0.00 0.00 43.38 4.85
136 137 2.878858 TAGCTCTAGCCAGCCAGCCA 62.879 60.000 0.00 0.00 43.38 4.75
137 138 2.505006 CTCTAGCCAGCCAGCCAG 59.495 66.667 0.00 0.00 0.00 4.85
138 139 3.753806 CTCTAGCCAGCCAGCCAGC 62.754 68.421 0.00 0.00 0.00 4.85
139 140 4.871910 CTAGCCAGCCAGCCAGCC 62.872 72.222 0.00 0.00 0.00 4.85
143 144 2.602568 CCAGCCAGCCAGCCTTTT 60.603 61.111 0.00 0.00 0.00 2.27
144 145 2.212110 CCAGCCAGCCAGCCTTTTT 61.212 57.895 0.00 0.00 0.00 1.94
145 146 1.291272 CAGCCAGCCAGCCTTTTTC 59.709 57.895 0.00 0.00 0.00 2.29
146 147 1.154688 AGCCAGCCAGCCTTTTTCT 59.845 52.632 0.00 0.00 0.00 2.52
147 148 0.470645 AGCCAGCCAGCCTTTTTCTT 60.471 50.000 0.00 0.00 0.00 2.52
148 149 0.394192 GCCAGCCAGCCTTTTTCTTT 59.606 50.000 0.00 0.00 0.00 2.52
149 150 1.202687 GCCAGCCAGCCTTTTTCTTTT 60.203 47.619 0.00 0.00 0.00 2.27
150 151 2.759191 CCAGCCAGCCTTTTTCTTTTC 58.241 47.619 0.00 0.00 0.00 2.29
151 152 2.102925 CCAGCCAGCCTTTTTCTTTTCA 59.897 45.455 0.00 0.00 0.00 2.69
152 153 3.244318 CCAGCCAGCCTTTTTCTTTTCAT 60.244 43.478 0.00 0.00 0.00 2.57
153 154 3.992427 CAGCCAGCCTTTTTCTTTTCATC 59.008 43.478 0.00 0.00 0.00 2.92
154 155 3.899980 AGCCAGCCTTTTTCTTTTCATCT 59.100 39.130 0.00 0.00 0.00 2.90
155 156 4.346127 AGCCAGCCTTTTTCTTTTCATCTT 59.654 37.500 0.00 0.00 0.00 2.40
156 157 4.687948 GCCAGCCTTTTTCTTTTCATCTTC 59.312 41.667 0.00 0.00 0.00 2.87
157 158 5.233225 CCAGCCTTTTTCTTTTCATCTTCC 58.767 41.667 0.00 0.00 0.00 3.46
158 159 5.011431 CCAGCCTTTTTCTTTTCATCTTCCT 59.989 40.000 0.00 0.00 0.00 3.36
159 160 6.155136 CAGCCTTTTTCTTTTCATCTTCCTC 58.845 40.000 0.00 0.00 0.00 3.71
160 161 6.015603 CAGCCTTTTTCTTTTCATCTTCCTCT 60.016 38.462 0.00 0.00 0.00 3.69
161 162 6.208402 AGCCTTTTTCTTTTCATCTTCCTCTC 59.792 38.462 0.00 0.00 0.00 3.20
162 163 6.571344 GCCTTTTTCTTTTCATCTTCCTCTCC 60.571 42.308 0.00 0.00 0.00 3.71
163 164 6.718912 CCTTTTTCTTTTCATCTTCCTCTCCT 59.281 38.462 0.00 0.00 0.00 3.69
164 165 7.232330 CCTTTTTCTTTTCATCTTCCTCTCCTT 59.768 37.037 0.00 0.00 0.00 3.36
165 166 8.539117 TTTTTCTTTTCATCTTCCTCTCCTTT 57.461 30.769 0.00 0.00 0.00 3.11
166 167 8.539117 TTTTCTTTTCATCTTCCTCTCCTTTT 57.461 30.769 0.00 0.00 0.00 2.27
167 168 7.751768 TTCTTTTCATCTTCCTCTCCTTTTC 57.248 36.000 0.00 0.00 0.00 2.29
168 169 6.241645 TCTTTTCATCTTCCTCTCCTTTTCC 58.758 40.000 0.00 0.00 0.00 3.13
169 170 5.582950 TTTCATCTTCCTCTCCTTTTCCA 57.417 39.130 0.00 0.00 0.00 3.53
170 171 5.786121 TTCATCTTCCTCTCCTTTTCCAT 57.214 39.130 0.00 0.00 0.00 3.41
171 172 5.108187 TCATCTTCCTCTCCTTTTCCATG 57.892 43.478 0.00 0.00 0.00 3.66
172 173 4.080129 TCATCTTCCTCTCCTTTTCCATGG 60.080 45.833 4.97 4.97 0.00 3.66
173 174 3.531059 TCTTCCTCTCCTTTTCCATGGA 58.469 45.455 11.44 11.44 0.00 3.41
174 175 3.916349 TCTTCCTCTCCTTTTCCATGGAA 59.084 43.478 23.63 23.63 31.23 3.53
175 176 3.721087 TCCTCTCCTTTTCCATGGAAC 57.279 47.619 27.04 0.00 33.41 3.62
176 177 3.260205 TCCTCTCCTTTTCCATGGAACT 58.740 45.455 27.04 0.00 33.41 3.01
177 178 3.009473 TCCTCTCCTTTTCCATGGAACTG 59.991 47.826 27.04 20.24 33.41 3.16
178 179 2.751806 CTCTCCTTTTCCATGGAACTGC 59.248 50.000 27.04 0.00 33.41 4.40
179 180 2.376518 TCTCCTTTTCCATGGAACTGCT 59.623 45.455 27.04 0.00 33.41 4.24
180 181 3.160269 CTCCTTTTCCATGGAACTGCTT 58.840 45.455 27.04 0.00 33.41 3.91
181 182 3.575687 CTCCTTTTCCATGGAACTGCTTT 59.424 43.478 27.04 0.00 33.41 3.51
182 183 3.573967 TCCTTTTCCATGGAACTGCTTTC 59.426 43.478 27.04 0.00 33.41 2.62
183 184 3.568538 CTTTTCCATGGAACTGCTTTCG 58.431 45.455 27.04 5.56 34.67 3.46
184 185 2.270352 TTCCATGGAACTGCTTTCGT 57.730 45.000 23.63 0.00 34.67 3.85
185 186 1.522668 TCCATGGAACTGCTTTCGTG 58.477 50.000 13.46 0.00 34.67 4.35
186 187 1.202758 TCCATGGAACTGCTTTCGTGT 60.203 47.619 13.46 0.00 34.67 4.49
187 188 1.197721 CCATGGAACTGCTTTCGTGTC 59.802 52.381 5.56 0.00 34.67 3.67
188 189 1.197721 CATGGAACTGCTTTCGTGTCC 59.802 52.381 0.00 0.00 34.67 4.02
189 190 0.534203 TGGAACTGCTTTCGTGTCCC 60.534 55.000 0.00 0.00 34.67 4.46
190 191 1.566018 GGAACTGCTTTCGTGTCCCG 61.566 60.000 0.00 0.00 34.67 5.14
191 192 0.878961 GAACTGCTTTCGTGTCCCGT 60.879 55.000 0.00 0.00 37.94 5.28
192 193 0.463116 AACTGCTTTCGTGTCCCGTT 60.463 50.000 0.00 0.00 37.94 4.44
193 194 0.878961 ACTGCTTTCGTGTCCCGTTC 60.879 55.000 0.00 0.00 37.94 3.95
194 195 1.566018 CTGCTTTCGTGTCCCGTTCC 61.566 60.000 0.00 0.00 37.94 3.62
195 196 1.595929 GCTTTCGTGTCCCGTTCCA 60.596 57.895 0.00 0.00 37.94 3.53
196 197 0.953960 GCTTTCGTGTCCCGTTCCAT 60.954 55.000 0.00 0.00 37.94 3.41
197 198 1.076332 CTTTCGTGTCCCGTTCCATC 58.924 55.000 0.00 0.00 37.94 3.51
198 199 0.320946 TTTCGTGTCCCGTTCCATCC 60.321 55.000 0.00 0.00 37.94 3.51
199 200 2.495366 TTCGTGTCCCGTTCCATCCG 62.495 60.000 0.00 0.00 37.94 4.18
200 201 2.125269 GTGTCCCGTTCCATCCGG 60.125 66.667 0.00 0.00 45.07 5.14
201 202 4.090588 TGTCCCGTTCCATCCGGC 62.091 66.667 0.00 0.00 44.13 6.13
202 203 4.851179 GTCCCGTTCCATCCGGCC 62.851 72.222 0.00 0.00 44.13 6.13
204 205 4.109675 CCCGTTCCATCCGGCCTT 62.110 66.667 0.00 0.00 44.13 4.35
205 206 2.045340 CCGTTCCATCCGGCCTTT 60.045 61.111 0.00 0.00 38.85 3.11
206 207 1.677633 CCGTTCCATCCGGCCTTTT 60.678 57.895 0.00 0.00 38.85 2.27
207 208 1.506262 CGTTCCATCCGGCCTTTTG 59.494 57.895 0.00 0.00 0.00 2.44
208 209 1.890174 GTTCCATCCGGCCTTTTGG 59.110 57.895 0.00 4.66 44.18 3.28
218 219 2.644992 CCTTTTGGCCACTCGTGC 59.355 61.111 3.88 0.00 0.00 5.34
219 220 2.192861 CCTTTTGGCCACTCGTGCA 61.193 57.895 3.88 0.00 0.00 4.57
220 221 1.732917 CTTTTGGCCACTCGTGCAA 59.267 52.632 3.88 0.00 0.00 4.08
221 222 0.594796 CTTTTGGCCACTCGTGCAAC 60.595 55.000 3.88 0.00 0.00 4.17
222 223 1.315981 TTTTGGCCACTCGTGCAACA 61.316 50.000 3.88 0.00 35.74 3.33
223 224 1.315981 TTTGGCCACTCGTGCAACAA 61.316 50.000 3.88 0.00 35.74 2.83
224 225 1.999071 TTGGCCACTCGTGCAACAAC 61.999 55.000 3.88 0.00 35.74 3.32
225 226 2.186826 GGCCACTCGTGCAACAACT 61.187 57.895 0.00 0.00 35.74 3.16
226 227 1.009675 GCCACTCGTGCAACAACTG 60.010 57.895 0.00 0.00 35.74 3.16
227 228 1.714899 GCCACTCGTGCAACAACTGT 61.715 55.000 0.00 0.00 35.74 3.55
228 229 0.732571 CCACTCGTGCAACAACTGTT 59.267 50.000 0.00 0.00 39.12 3.16
229 230 1.132262 CCACTCGTGCAACAACTGTTT 59.868 47.619 0.00 0.00 35.83 2.83
230 231 2.176369 CACTCGTGCAACAACTGTTTG 58.824 47.619 0.00 0.00 35.83 2.93
231 232 1.132262 ACTCGTGCAACAACTGTTTGG 59.868 47.619 0.00 0.00 37.00 3.28
232 233 0.453793 TCGTGCAACAACTGTTTGGG 59.546 50.000 0.00 0.00 37.00 4.12
233 234 0.453793 CGTGCAACAACTGTTTGGGA 59.546 50.000 0.00 0.00 37.00 4.37
234 235 1.533756 CGTGCAACAACTGTTTGGGAG 60.534 52.381 0.00 0.00 37.00 4.30
235 236 1.748493 GTGCAACAACTGTTTGGGAGA 59.252 47.619 0.00 0.00 37.00 3.71
236 237 2.023673 TGCAACAACTGTTTGGGAGAG 58.976 47.619 0.00 0.00 37.00 3.20
237 238 1.269257 GCAACAACTGTTTGGGAGAGC 60.269 52.381 0.00 0.00 37.00 4.09
238 239 1.338020 CAACAACTGTTTGGGAGAGCC 59.662 52.381 0.00 0.00 37.00 4.70
239 240 0.535102 ACAACTGTTTGGGAGAGCCG 60.535 55.000 0.00 0.00 37.00 5.52
240 241 0.250295 CAACTGTTTGGGAGAGCCGA 60.250 55.000 0.00 0.00 33.83 5.54
241 242 0.693049 AACTGTTTGGGAGAGCCGAT 59.307 50.000 0.00 0.00 33.83 4.18
242 243 0.036010 ACTGTTTGGGAGAGCCGATG 60.036 55.000 0.00 0.00 33.83 3.84
243 244 0.250234 CTGTTTGGGAGAGCCGATGA 59.750 55.000 0.00 0.00 33.83 2.92
244 245 0.690192 TGTTTGGGAGAGCCGATGAA 59.310 50.000 0.00 0.00 33.83 2.57
245 246 1.087501 GTTTGGGAGAGCCGATGAAC 58.912 55.000 0.00 0.00 33.83 3.18
246 247 0.035439 TTTGGGAGAGCCGATGAACC 60.035 55.000 0.00 0.00 33.83 3.62
247 248 1.910580 TTGGGAGAGCCGATGAACCC 61.911 60.000 0.00 0.00 37.99 4.11
248 249 2.506472 GGAGAGCCGATGAACCCC 59.494 66.667 0.00 0.00 0.00 4.95
249 250 2.506472 GAGAGCCGATGAACCCCC 59.494 66.667 0.00 0.00 0.00 5.40
263 264 4.722700 CCCCCGGCCTTGACACAG 62.723 72.222 0.00 0.00 0.00 3.66
264 265 3.636231 CCCCGGCCTTGACACAGA 61.636 66.667 0.00 0.00 0.00 3.41
265 266 2.671070 CCCGGCCTTGACACAGAT 59.329 61.111 0.00 0.00 0.00 2.90
266 267 1.450312 CCCGGCCTTGACACAGATC 60.450 63.158 0.00 0.00 0.00 2.75
267 268 1.811266 CCGGCCTTGACACAGATCG 60.811 63.158 0.00 0.00 0.00 3.69
268 269 2.456119 CGGCCTTGACACAGATCGC 61.456 63.158 0.00 0.00 0.00 4.58
269 270 2.109126 GGCCTTGACACAGATCGCC 61.109 63.158 0.00 0.00 0.00 5.54
270 271 1.375908 GCCTTGACACAGATCGCCA 60.376 57.895 0.00 0.00 0.00 5.69
271 272 0.745845 GCCTTGACACAGATCGCCAT 60.746 55.000 0.00 0.00 0.00 4.40
272 273 1.742761 CCTTGACACAGATCGCCATT 58.257 50.000 0.00 0.00 0.00 3.16
273 274 1.399440 CCTTGACACAGATCGCCATTG 59.601 52.381 0.00 0.00 0.00 2.82
274 275 2.079158 CTTGACACAGATCGCCATTGT 58.921 47.619 0.00 0.00 0.00 2.71
275 276 1.725641 TGACACAGATCGCCATTGTC 58.274 50.000 7.74 7.74 37.65 3.18
276 277 0.647410 GACACAGATCGCCATTGTCG 59.353 55.000 0.00 0.00 0.00 4.35
277 278 0.037326 ACACAGATCGCCATTGTCGT 60.037 50.000 0.00 0.00 0.00 4.34
278 279 0.647410 CACAGATCGCCATTGTCGTC 59.353 55.000 0.00 0.00 0.00 4.20
279 280 0.802222 ACAGATCGCCATTGTCGTCG 60.802 55.000 0.00 0.00 0.00 5.12
280 281 0.802222 CAGATCGCCATTGTCGTCGT 60.802 55.000 0.00 0.00 0.00 4.34
281 282 0.802222 AGATCGCCATTGTCGTCGTG 60.802 55.000 0.00 0.00 0.00 4.35
282 283 1.076533 GATCGCCATTGTCGTCGTGT 61.077 55.000 0.00 0.00 0.00 4.49
283 284 0.669318 ATCGCCATTGTCGTCGTGTT 60.669 50.000 0.00 0.00 0.00 3.32
284 285 1.129809 CGCCATTGTCGTCGTGTTC 59.870 57.895 0.00 0.00 0.00 3.18
285 286 1.495951 GCCATTGTCGTCGTGTTCC 59.504 57.895 0.00 0.00 0.00 3.62
286 287 0.949105 GCCATTGTCGTCGTGTTCCT 60.949 55.000 0.00 0.00 0.00 3.36
287 288 1.068474 CCATTGTCGTCGTGTTCCTC 58.932 55.000 0.00 0.00 0.00 3.71
288 289 1.604438 CCATTGTCGTCGTGTTCCTCA 60.604 52.381 0.00 0.00 0.00 3.86
289 290 1.721389 CATTGTCGTCGTGTTCCTCAG 59.279 52.381 0.00 0.00 0.00 3.35
290 291 1.026584 TTGTCGTCGTGTTCCTCAGA 58.973 50.000 0.00 0.00 0.00 3.27
291 292 1.244816 TGTCGTCGTGTTCCTCAGAT 58.755 50.000 0.00 0.00 0.00 2.90
292 293 1.199327 TGTCGTCGTGTTCCTCAGATC 59.801 52.381 0.00 0.00 0.00 2.75
293 294 0.809385 TCGTCGTGTTCCTCAGATCC 59.191 55.000 0.00 0.00 0.00 3.36
294 295 0.526211 CGTCGTGTTCCTCAGATCCA 59.474 55.000 0.00 0.00 0.00 3.41
295 296 1.468224 CGTCGTGTTCCTCAGATCCAG 60.468 57.143 0.00 0.00 0.00 3.86
296 297 0.532573 TCGTGTTCCTCAGATCCAGC 59.467 55.000 0.00 0.00 0.00 4.85
297 298 0.460987 CGTGTTCCTCAGATCCAGCC 60.461 60.000 0.00 0.00 0.00 4.85
298 299 0.908198 GTGTTCCTCAGATCCAGCCT 59.092 55.000 0.00 0.00 0.00 4.58
299 300 1.134551 GTGTTCCTCAGATCCAGCCTC 60.135 57.143 0.00 0.00 0.00 4.70
300 301 0.467804 GTTCCTCAGATCCAGCCTCC 59.532 60.000 0.00 0.00 0.00 4.30
301 302 1.045350 TTCCTCAGATCCAGCCTCCG 61.045 60.000 0.00 0.00 0.00 4.63
302 303 2.420890 CTCAGATCCAGCCTCCGC 59.579 66.667 0.00 0.00 0.00 5.54
303 304 3.157252 TCAGATCCAGCCTCCGCC 61.157 66.667 0.00 0.00 34.57 6.13
304 305 3.473647 CAGATCCAGCCTCCGCCA 61.474 66.667 0.00 0.00 34.57 5.69
305 306 3.474570 AGATCCAGCCTCCGCCAC 61.475 66.667 0.00 0.00 34.57 5.01
306 307 4.899239 GATCCAGCCTCCGCCACG 62.899 72.222 0.00 0.00 34.57 4.94
321 322 4.373116 ACGCACCCGCTTCGTCAT 62.373 61.111 0.00 0.00 38.22 3.06
322 323 2.202690 CGCACCCGCTTCGTCATA 60.203 61.111 0.00 0.00 35.30 2.15
323 324 1.807981 CGCACCCGCTTCGTCATAA 60.808 57.895 0.00 0.00 35.30 1.90
324 325 1.752501 CGCACCCGCTTCGTCATAAG 61.753 60.000 0.00 0.00 35.30 1.73
325 326 0.739813 GCACCCGCTTCGTCATAAGT 60.740 55.000 0.00 0.00 34.30 2.24
326 327 1.722011 CACCCGCTTCGTCATAAGTT 58.278 50.000 0.00 0.00 0.00 2.66
327 328 1.659098 CACCCGCTTCGTCATAAGTTC 59.341 52.381 0.00 0.00 0.00 3.01
328 329 1.274167 ACCCGCTTCGTCATAAGTTCA 59.726 47.619 0.00 0.00 0.00 3.18
329 330 2.093658 ACCCGCTTCGTCATAAGTTCAT 60.094 45.455 0.00 0.00 0.00 2.57
330 331 3.131577 ACCCGCTTCGTCATAAGTTCATA 59.868 43.478 0.00 0.00 0.00 2.15
331 332 3.736252 CCCGCTTCGTCATAAGTTCATAG 59.264 47.826 0.00 0.00 0.00 2.23
332 333 3.182572 CCGCTTCGTCATAAGTTCATAGC 59.817 47.826 0.00 0.00 0.00 2.97
333 334 3.182572 CGCTTCGTCATAAGTTCATAGCC 59.817 47.826 0.00 0.00 0.00 3.93
334 335 4.372656 GCTTCGTCATAAGTTCATAGCCT 58.627 43.478 0.00 0.00 0.00 4.58
335 336 4.811557 GCTTCGTCATAAGTTCATAGCCTT 59.188 41.667 0.00 0.00 0.00 4.35
336 337 5.983720 GCTTCGTCATAAGTTCATAGCCTTA 59.016 40.000 0.00 0.00 0.00 2.69
337 338 6.074249 GCTTCGTCATAAGTTCATAGCCTTAC 60.074 42.308 0.00 0.00 0.00 2.34
338 339 5.516996 TCGTCATAAGTTCATAGCCTTACG 58.483 41.667 0.00 0.00 0.00 3.18
339 340 5.066893 TCGTCATAAGTTCATAGCCTTACGT 59.933 40.000 0.00 0.00 0.00 3.57
340 341 6.260714 TCGTCATAAGTTCATAGCCTTACGTA 59.739 38.462 0.00 0.00 0.00 3.57
341 342 7.040892 TCGTCATAAGTTCATAGCCTTACGTAT 60.041 37.037 0.00 0.00 0.00 3.06
342 343 7.594015 CGTCATAAGTTCATAGCCTTACGTATT 59.406 37.037 0.00 0.00 0.00 1.89
343 344 8.700644 GTCATAAGTTCATAGCCTTACGTATTG 58.299 37.037 0.00 0.00 0.00 1.90
344 345 8.418662 TCATAAGTTCATAGCCTTACGTATTGT 58.581 33.333 0.00 0.00 0.00 2.71
345 346 9.687210 CATAAGTTCATAGCCTTACGTATTGTA 57.313 33.333 0.00 0.00 0.00 2.41
346 347 9.909644 ATAAGTTCATAGCCTTACGTATTGTAG 57.090 33.333 0.00 0.00 33.75 2.74
347 348 7.578310 AGTTCATAGCCTTACGTATTGTAGA 57.422 36.000 0.00 0.00 33.75 2.59
348 349 7.649973 AGTTCATAGCCTTACGTATTGTAGAG 58.350 38.462 0.00 0.00 33.75 2.43
349 350 7.501559 AGTTCATAGCCTTACGTATTGTAGAGA 59.498 37.037 0.00 0.00 33.75 3.10
350 351 7.812690 TCATAGCCTTACGTATTGTAGAGAA 57.187 36.000 0.00 0.00 33.75 2.87
351 352 8.405418 TCATAGCCTTACGTATTGTAGAGAAT 57.595 34.615 0.00 0.00 33.75 2.40
352 353 8.297426 TCATAGCCTTACGTATTGTAGAGAATG 58.703 37.037 0.00 0.00 33.75 2.67
353 354 6.710597 AGCCTTACGTATTGTAGAGAATGA 57.289 37.500 0.00 0.00 33.75 2.57
354 355 7.291411 AGCCTTACGTATTGTAGAGAATGAT 57.709 36.000 0.00 0.00 33.75 2.45
355 356 7.727181 AGCCTTACGTATTGTAGAGAATGATT 58.273 34.615 0.00 0.00 33.75 2.57
356 357 8.204836 AGCCTTACGTATTGTAGAGAATGATTT 58.795 33.333 0.00 0.00 33.75 2.17
357 358 8.276325 GCCTTACGTATTGTAGAGAATGATTTG 58.724 37.037 0.00 0.00 33.75 2.32
358 359 8.765219 CCTTACGTATTGTAGAGAATGATTTGG 58.235 37.037 0.00 0.00 33.75 3.28
359 360 9.314321 CTTACGTATTGTAGAGAATGATTTGGT 57.686 33.333 0.00 0.00 33.75 3.67
360 361 7.539712 ACGTATTGTAGAGAATGATTTGGTG 57.460 36.000 0.00 0.00 0.00 4.17
361 362 6.037172 ACGTATTGTAGAGAATGATTTGGTGC 59.963 38.462 0.00 0.00 0.00 5.01
362 363 6.037062 CGTATTGTAGAGAATGATTTGGTGCA 59.963 38.462 0.00 0.00 0.00 4.57
363 364 7.254898 CGTATTGTAGAGAATGATTTGGTGCAT 60.255 37.037 0.00 0.00 0.00 3.96
364 365 6.441093 TTGTAGAGAATGATTTGGTGCATC 57.559 37.500 0.00 0.00 0.00 3.91
365 366 4.571984 TGTAGAGAATGATTTGGTGCATCG 59.428 41.667 0.00 0.00 0.00 3.84
366 367 3.877559 AGAGAATGATTTGGTGCATCGA 58.122 40.909 0.00 0.00 0.00 3.59
367 368 4.458397 AGAGAATGATTTGGTGCATCGAT 58.542 39.130 0.00 0.00 0.00 3.59
368 369 5.614308 AGAGAATGATTTGGTGCATCGATA 58.386 37.500 0.00 0.00 0.00 2.92
369 370 6.057533 AGAGAATGATTTGGTGCATCGATAA 58.942 36.000 0.00 0.00 0.00 1.75
370 371 6.713903 AGAGAATGATTTGGTGCATCGATAAT 59.286 34.615 0.00 0.00 0.00 1.28
371 372 7.230108 AGAGAATGATTTGGTGCATCGATAATT 59.770 33.333 0.00 0.00 0.00 1.40
372 373 7.143340 AGAATGATTTGGTGCATCGATAATTG 58.857 34.615 0.00 0.00 0.00 2.32
373 374 6.638096 ATGATTTGGTGCATCGATAATTGA 57.362 33.333 0.00 0.00 0.00 2.57
374 375 6.638096 TGATTTGGTGCATCGATAATTGAT 57.362 33.333 0.00 0.00 0.00 2.57
375 376 7.041635 TGATTTGGTGCATCGATAATTGATT 57.958 32.000 0.00 0.00 0.00 2.57
376 377 6.919115 TGATTTGGTGCATCGATAATTGATTG 59.081 34.615 0.00 0.00 0.00 2.67
377 378 6.448207 TTTGGTGCATCGATAATTGATTGA 57.552 33.333 0.00 0.00 32.16 2.57
378 379 6.638096 TTGGTGCATCGATAATTGATTGAT 57.362 33.333 0.00 0.00 39.00 2.57
379 380 6.245115 TGGTGCATCGATAATTGATTGATC 57.755 37.500 0.00 0.00 36.64 2.92
380 381 5.106987 TGGTGCATCGATAATTGATTGATCG 60.107 40.000 0.00 1.88 42.96 3.69
381 382 5.106948 GGTGCATCGATAATTGATTGATCGT 60.107 40.000 0.00 0.00 42.37 3.73
382 383 5.787062 GTGCATCGATAATTGATTGATCGTG 59.213 40.000 0.00 6.61 42.37 4.35
383 384 4.785055 GCATCGATAATTGATTGATCGTGC 59.215 41.667 0.00 13.84 42.37 5.34
384 385 5.615325 GCATCGATAATTGATTGATCGTGCA 60.615 40.000 19.03 0.00 42.67 4.57
385 386 5.328886 TCGATAATTGATTGATCGTGCAC 57.671 39.130 6.82 6.82 42.37 4.57
386 387 5.049828 TCGATAATTGATTGATCGTGCACT 58.950 37.500 16.19 0.00 42.37 4.40
387 388 6.212955 TCGATAATTGATTGATCGTGCACTA 58.787 36.000 16.19 3.92 42.37 2.74
388 389 6.363357 TCGATAATTGATTGATCGTGCACTAG 59.637 38.462 16.19 0.00 42.37 2.57
389 390 6.400409 CGATAATTGATTGATCGTGCACTAGG 60.400 42.308 16.19 0.00 38.10 3.02
390 391 1.939974 TGATTGATCGTGCACTAGGC 58.060 50.000 16.19 1.16 45.13 3.93
420 421 6.726490 ATATATATAGGTACAAGGGGTGCG 57.274 41.667 0.00 0.00 32.16 5.34
421 422 2.457813 TATAGGTACAAGGGGTGCGA 57.542 50.000 0.00 0.00 32.16 5.10
422 423 0.828677 ATAGGTACAAGGGGTGCGAC 59.171 55.000 0.00 0.00 32.16 5.19
423 424 0.251922 TAGGTACAAGGGGTGCGACT 60.252 55.000 0.00 0.00 32.16 4.18
424 425 1.375523 GGTACAAGGGGTGCGACTG 60.376 63.158 0.00 0.00 32.16 3.51
425 426 1.375523 GTACAAGGGGTGCGACTGG 60.376 63.158 0.00 0.00 0.00 4.00
426 427 1.839747 TACAAGGGGTGCGACTGGT 60.840 57.895 0.00 0.00 0.00 4.00
427 428 0.542467 TACAAGGGGTGCGACTGGTA 60.542 55.000 0.00 0.00 0.00 3.25
549 552 2.185350 CCAAGCTCTGATCGGCGT 59.815 61.111 6.85 0.00 0.00 5.68
976 984 0.404040 CTAGTGGCTTTGGTGGGGAA 59.596 55.000 0.00 0.00 0.00 3.97
1022 1030 3.795877 TGTCAATTCTATCGCAGATGCA 58.204 40.909 5.55 0.00 45.12 3.96
1069 1077 0.611714 GGGTCTGAGCTTTAACCCGA 59.388 55.000 13.66 0.00 41.87 5.14
1188 1196 6.942005 TGATCTTGGAGCTGTTTGATTTTAGA 59.058 34.615 0.00 0.00 0.00 2.10
1191 1199 4.655963 TGGAGCTGTTTGATTTTAGAGCT 58.344 39.130 0.00 0.00 39.46 4.09
1200 1208 1.795286 GATTTTAGAGCTCGGCCATCG 59.205 52.381 8.37 0.00 40.90 3.84
1227 1235 6.114187 TGGAAGTTTGAGAAGCTTCAGATA 57.886 37.500 27.57 8.38 40.06 1.98
1341 1349 1.028905 TGGACTCAAAGGGTTTTGCG 58.971 50.000 0.00 0.00 42.71 4.85
1387 1395 5.486526 GAATATGGATAAGAGTGCAGGAGG 58.513 45.833 0.00 0.00 0.00 4.30
1398 1406 0.326522 TGCAGGAGGCCCTAATGAGA 60.327 55.000 0.00 0.00 42.02 3.27
1474 1482 6.543465 TCAGTATGAAGGACTGCCATATTTTG 59.457 38.462 0.00 0.00 45.97 2.44
1492 1501 1.826487 GGTTTCTTGTGTGGCCGGT 60.826 57.895 1.90 0.00 0.00 5.28
1494 1503 0.248866 GTTTCTTGTGTGGCCGGTTG 60.249 55.000 1.90 0.00 0.00 3.77
1497 1506 4.130554 TTGTGTGGCCGGTTGGGT 62.131 61.111 1.90 0.00 38.44 4.51
1523 1532 1.203100 AGATGCTTTTTGCCTGGACCT 60.203 47.619 0.00 0.00 42.00 3.85
1626 1635 1.215173 CCCCCAATGAGCAGTAATGGA 59.785 52.381 0.00 0.00 32.82 3.41
1633 1642 2.551270 TGAGCAGTAATGGAGGAAGGT 58.449 47.619 0.00 0.00 0.00 3.50
1731 1740 5.304101 ACTGAAAAACAATCAAGGCATGGTA 59.696 36.000 0.00 0.00 0.00 3.25
1783 1792 4.498520 GAGCTGCTGGTCGCGCTA 62.499 66.667 7.01 0.00 44.38 4.26
1851 1860 1.000938 GTGTACCGTCGAGTGGAGTTT 60.001 52.381 10.49 0.00 0.00 2.66
1854 1863 1.111116 ACCGTCGAGTGGAGTTTGGA 61.111 55.000 10.49 0.00 0.00 3.53
1859 1868 0.951040 CGAGTGGAGTTTGGACCTGC 60.951 60.000 0.00 0.00 0.00 4.85
1874 1883 0.108585 CCTGCGGGCCACACTAATAT 59.891 55.000 4.39 0.00 0.00 1.28
1887 1896 5.065218 CCACACTAATATGTCAAACCAGCTC 59.935 44.000 0.00 0.00 0.00 4.09
1902 1911 3.201487 ACCAGCTCATGATCTTGGATCAA 59.799 43.478 20.78 0.00 0.00 2.57
1953 1962 1.202371 GGCGATGAACCGAGTACATCA 60.202 52.381 0.00 0.00 39.93 3.07
1967 1976 7.506261 ACCGAGTACATCAAAGGAAGATAGTAT 59.494 37.037 0.00 0.00 0.00 2.12
2024 2033 3.376935 CTAGTGAGCAGGCGGTGGG 62.377 68.421 0.00 0.00 0.00 4.61
2072 2084 1.269883 TGCATAACGTGGAACTGTCGT 60.270 47.619 0.00 0.00 39.49 4.34
2151 2163 4.382685 CGCCCACCTTAGTCTTCTTATCAA 60.383 45.833 0.00 0.00 0.00 2.57
2285 2297 5.828859 GTCTAGAGAGGTGGATGTTAAGCTA 59.171 44.000 0.00 0.00 0.00 3.32
2370 2382 7.228590 AGAGTGGTGTTTTACAGGCTTTTATA 58.771 34.615 0.00 0.00 0.00 0.98
2404 2417 2.560542 GAGTGAAAGGAGTGAGAGCTGA 59.439 50.000 0.00 0.00 0.00 4.26
2413 2426 3.879892 GGAGTGAGAGCTGAACACTTTTT 59.120 43.478 15.06 0.00 43.49 1.94
2554 2567 1.807755 CGTGAGGCCATCGATGAATGT 60.808 52.381 26.86 8.03 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.751175 CGCATCTAACTTTTCCTTCCACA 59.249 43.478 0.00 0.00 0.00 4.17
1 2 3.751698 ACGCATCTAACTTTTCCTTCCAC 59.248 43.478 0.00 0.00 0.00 4.02
2 3 3.751175 CACGCATCTAACTTTTCCTTCCA 59.249 43.478 0.00 0.00 0.00 3.53
3 4 3.127030 CCACGCATCTAACTTTTCCTTCC 59.873 47.826 0.00 0.00 0.00 3.46
4 5 3.127030 CCCACGCATCTAACTTTTCCTTC 59.873 47.826 0.00 0.00 0.00 3.46
7 8 1.132453 GCCCACGCATCTAACTTTTCC 59.868 52.381 0.00 0.00 34.03 3.13
8 9 2.084546 AGCCCACGCATCTAACTTTTC 58.915 47.619 0.00 0.00 37.52 2.29
10 11 1.453155 CAGCCCACGCATCTAACTTT 58.547 50.000 0.00 0.00 37.52 2.66
11 12 1.026718 GCAGCCCACGCATCTAACTT 61.027 55.000 0.00 0.00 37.52 2.66
12 13 1.450312 GCAGCCCACGCATCTAACT 60.450 57.895 0.00 0.00 37.52 2.24
13 14 1.026718 AAGCAGCCCACGCATCTAAC 61.027 55.000 0.00 0.00 37.52 2.34
14 15 1.026182 CAAGCAGCCCACGCATCTAA 61.026 55.000 0.00 0.00 37.52 2.10
15 16 1.450134 CAAGCAGCCCACGCATCTA 60.450 57.895 0.00 0.00 37.52 1.98
16 17 2.749044 CAAGCAGCCCACGCATCT 60.749 61.111 0.00 0.00 37.52 2.90
17 18 3.818787 CCAAGCAGCCCACGCATC 61.819 66.667 0.00 0.00 37.52 3.91
18 19 4.349503 TCCAAGCAGCCCACGCAT 62.350 61.111 0.00 0.00 37.52 4.73
21 22 4.335647 AGGTCCAAGCAGCCCACG 62.336 66.667 0.00 0.00 0.00 4.94
22 23 2.674380 CAGGTCCAAGCAGCCCAC 60.674 66.667 0.00 0.00 0.00 4.61
23 24 4.666253 GCAGGTCCAAGCAGCCCA 62.666 66.667 1.75 0.00 0.00 5.36
25 26 4.357279 AGGCAGGTCCAAGCAGCC 62.357 66.667 4.59 4.59 45.54 4.85
26 27 3.060615 CAGGCAGGTCCAAGCAGC 61.061 66.667 8.39 0.00 37.29 5.25
27 28 3.060615 GCAGGCAGGTCCAAGCAG 61.061 66.667 8.39 2.18 37.85 4.24
28 29 4.666253 GGCAGGCAGGTCCAAGCA 62.666 66.667 8.39 0.00 39.14 3.91
29 30 4.357279 AGGCAGGCAGGTCCAAGC 62.357 66.667 0.00 0.00 37.40 4.01
30 31 2.045536 GAGGCAGGCAGGTCCAAG 60.046 66.667 0.00 0.00 37.29 3.61
31 32 4.020617 CGAGGCAGGCAGGTCCAA 62.021 66.667 0.00 0.00 37.29 3.53
33 34 4.459089 GTCGAGGCAGGCAGGTCC 62.459 72.222 0.00 0.00 0.00 4.46
34 35 3.655810 CTGTCGAGGCAGGCAGGTC 62.656 68.421 6.69 0.00 39.97 3.85
35 36 3.699894 CTGTCGAGGCAGGCAGGT 61.700 66.667 6.69 0.00 39.97 4.00
44 45 1.062587 CTTTTTATGCCGCTGTCGAGG 59.937 52.381 0.00 0.00 38.10 4.63
45 46 1.062587 CCTTTTTATGCCGCTGTCGAG 59.937 52.381 0.00 0.00 38.10 4.04
46 47 1.083489 CCTTTTTATGCCGCTGTCGA 58.917 50.000 0.00 0.00 38.10 4.20
47 48 0.098728 CCCTTTTTATGCCGCTGTCG 59.901 55.000 0.00 0.00 0.00 4.35
48 49 0.455815 CCCCTTTTTATGCCGCTGTC 59.544 55.000 0.00 0.00 0.00 3.51
49 50 1.604147 GCCCCTTTTTATGCCGCTGT 61.604 55.000 0.00 0.00 0.00 4.40
50 51 1.141665 GCCCCTTTTTATGCCGCTG 59.858 57.895 0.00 0.00 0.00 5.18
51 52 1.304879 TGCCCCTTTTTATGCCGCT 60.305 52.632 0.00 0.00 0.00 5.52
52 53 1.141665 CTGCCCCTTTTTATGCCGC 59.858 57.895 0.00 0.00 0.00 6.53
53 54 1.141665 GCTGCCCCTTTTTATGCCG 59.858 57.895 0.00 0.00 0.00 5.69
54 55 0.108186 GTGCTGCCCCTTTTTATGCC 60.108 55.000 0.00 0.00 0.00 4.40
55 56 0.458370 CGTGCTGCCCCTTTTTATGC 60.458 55.000 0.00 0.00 0.00 3.14
56 57 1.135402 GTCGTGCTGCCCCTTTTTATG 60.135 52.381 0.00 0.00 0.00 1.90
57 58 1.173913 GTCGTGCTGCCCCTTTTTAT 58.826 50.000 0.00 0.00 0.00 1.40
58 59 0.179015 TGTCGTGCTGCCCCTTTTTA 60.179 50.000 0.00 0.00 0.00 1.52
59 60 1.454847 TGTCGTGCTGCCCCTTTTT 60.455 52.632 0.00 0.00 0.00 1.94
60 61 1.898574 CTGTCGTGCTGCCCCTTTT 60.899 57.895 0.00 0.00 0.00 2.27
61 62 2.281761 CTGTCGTGCTGCCCCTTT 60.282 61.111 0.00 0.00 0.00 3.11
65 66 1.305219 TAATTGCTGTCGTGCTGCCC 61.305 55.000 0.00 0.00 40.74 5.36
66 67 0.734889 ATAATTGCTGTCGTGCTGCC 59.265 50.000 0.00 0.00 40.74 4.85
67 68 2.600792 GCTATAATTGCTGTCGTGCTGC 60.601 50.000 0.00 0.00 41.65 5.25
68 69 2.609002 TGCTATAATTGCTGTCGTGCTG 59.391 45.455 0.00 0.00 0.00 4.41
69 70 2.868583 CTGCTATAATTGCTGTCGTGCT 59.131 45.455 0.00 0.00 0.00 4.40
70 71 2.609459 ACTGCTATAATTGCTGTCGTGC 59.391 45.455 0.00 0.00 37.96 5.34
71 72 5.966636 TTACTGCTATAATTGCTGTCGTG 57.033 39.130 5.85 0.00 41.53 4.35
72 73 6.074302 CGAATTACTGCTATAATTGCTGTCGT 60.074 38.462 9.60 0.00 41.53 4.34
73 74 6.292129 CGAATTACTGCTATAATTGCTGTCG 58.708 40.000 9.60 4.65 41.53 4.35
74 75 6.073548 AGCGAATTACTGCTATAATTGCTGTC 60.074 38.462 18.06 5.21 40.28 3.51
75 76 5.760253 AGCGAATTACTGCTATAATTGCTGT 59.240 36.000 18.06 7.43 40.28 4.40
76 77 6.073602 TCAGCGAATTACTGCTATAATTGCTG 60.074 38.462 25.99 25.99 44.81 4.41
77 78 5.991606 TCAGCGAATTACTGCTATAATTGCT 59.008 36.000 9.60 13.25 40.03 3.91
78 79 6.146184 TCTCAGCGAATTACTGCTATAATTGC 59.854 38.462 9.60 11.85 40.03 3.56
79 80 7.643528 TCTCAGCGAATTACTGCTATAATTG 57.356 36.000 9.60 5.17 40.03 2.32
80 81 9.360093 GTATCTCAGCGAATTACTGCTATAATT 57.640 33.333 5.72 5.72 40.03 1.40
81 82 8.523658 TGTATCTCAGCGAATTACTGCTATAAT 58.476 33.333 3.56 0.00 40.03 1.28
82 83 7.808381 GTGTATCTCAGCGAATTACTGCTATAA 59.192 37.037 3.56 0.00 40.03 0.98
83 84 7.040686 TGTGTATCTCAGCGAATTACTGCTATA 60.041 37.037 3.56 2.23 40.03 1.31
84 85 6.153067 GTGTATCTCAGCGAATTACTGCTAT 58.847 40.000 3.56 2.98 40.03 2.97
85 86 5.067283 TGTGTATCTCAGCGAATTACTGCTA 59.933 40.000 3.56 0.00 40.03 3.49
86 87 4.142160 TGTGTATCTCAGCGAATTACTGCT 60.142 41.667 3.56 0.00 43.58 4.24
87 88 4.026475 GTGTGTATCTCAGCGAATTACTGC 60.026 45.833 3.56 0.00 35.04 4.40
88 89 5.344066 AGTGTGTATCTCAGCGAATTACTG 58.656 41.667 2.22 2.22 36.44 2.74
89 90 5.584253 AGTGTGTATCTCAGCGAATTACT 57.416 39.130 0.00 0.00 0.00 2.24
90 91 7.139392 TCATAGTGTGTATCTCAGCGAATTAC 58.861 38.462 0.00 0.00 0.00 1.89
91 92 7.272037 TCATAGTGTGTATCTCAGCGAATTA 57.728 36.000 0.00 0.00 0.00 1.40
92 93 6.149129 TCATAGTGTGTATCTCAGCGAATT 57.851 37.500 0.00 0.00 0.00 2.17
93 94 5.774498 TCATAGTGTGTATCTCAGCGAAT 57.226 39.130 0.00 0.00 0.00 3.34
94 95 5.576447 TTCATAGTGTGTATCTCAGCGAA 57.424 39.130 0.00 0.00 0.00 4.70
95 96 5.774498 ATTCATAGTGTGTATCTCAGCGA 57.226 39.130 0.00 0.00 0.00 4.93
96 97 5.570973 GCTATTCATAGTGTGTATCTCAGCG 59.429 44.000 0.00 0.00 32.96 5.18
97 98 6.686630 AGCTATTCATAGTGTGTATCTCAGC 58.313 40.000 0.00 0.00 32.96 4.26
98 99 8.109705 AGAGCTATTCATAGTGTGTATCTCAG 57.890 38.462 0.00 0.00 32.96 3.35
99 100 9.225436 CTAGAGCTATTCATAGTGTGTATCTCA 57.775 37.037 0.00 0.00 32.96 3.27
100 101 8.181573 GCTAGAGCTATTCATAGTGTGTATCTC 58.818 40.741 0.00 0.00 38.21 2.75
101 102 7.122055 GGCTAGAGCTATTCATAGTGTGTATCT 59.878 40.741 0.81 0.00 41.70 1.98
102 103 7.094162 TGGCTAGAGCTATTCATAGTGTGTATC 60.094 40.741 0.81 0.00 41.70 2.24
103 104 6.721668 TGGCTAGAGCTATTCATAGTGTGTAT 59.278 38.462 0.81 0.00 41.70 2.29
104 105 6.068670 TGGCTAGAGCTATTCATAGTGTGTA 58.931 40.000 0.81 0.00 41.70 2.90
105 106 4.895889 TGGCTAGAGCTATTCATAGTGTGT 59.104 41.667 0.81 0.00 41.70 3.72
106 107 5.459536 TGGCTAGAGCTATTCATAGTGTG 57.540 43.478 0.81 0.00 41.70 3.82
107 108 4.021544 GCTGGCTAGAGCTATTCATAGTGT 60.022 45.833 0.00 0.00 41.70 3.55
108 109 4.493547 GCTGGCTAGAGCTATTCATAGTG 58.506 47.826 0.00 0.00 41.70 2.74
109 110 3.513515 GGCTGGCTAGAGCTATTCATAGT 59.486 47.826 0.00 0.00 41.70 2.12
110 111 3.513119 TGGCTGGCTAGAGCTATTCATAG 59.487 47.826 0.00 0.00 41.70 2.23
111 112 3.510459 TGGCTGGCTAGAGCTATTCATA 58.490 45.455 0.00 0.00 41.70 2.15
112 113 2.302445 CTGGCTGGCTAGAGCTATTCAT 59.698 50.000 0.00 0.00 41.70 2.57
113 114 1.690893 CTGGCTGGCTAGAGCTATTCA 59.309 52.381 0.00 0.00 41.70 2.57
114 115 1.607767 GCTGGCTGGCTAGAGCTATTC 60.608 57.143 10.05 0.00 41.70 1.75
115 116 0.396060 GCTGGCTGGCTAGAGCTATT 59.604 55.000 10.05 0.00 41.70 1.73
116 117 1.479368 GGCTGGCTGGCTAGAGCTAT 61.479 60.000 10.05 0.00 41.70 2.97
117 118 2.136878 GGCTGGCTGGCTAGAGCTA 61.137 63.158 10.05 0.00 41.70 3.32
118 119 3.478274 GGCTGGCTGGCTAGAGCT 61.478 66.667 10.05 0.00 41.70 4.09
119 120 3.753806 CTGGCTGGCTGGCTAGAGC 62.754 68.421 18.27 1.13 42.23 4.09
120 121 2.505006 CTGGCTGGCTGGCTAGAG 59.495 66.667 18.27 4.62 42.23 2.43
121 122 3.790437 GCTGGCTGGCTGGCTAGA 61.790 66.667 18.27 0.00 42.23 2.43
122 123 4.871910 GGCTGGCTGGCTGGCTAG 62.872 72.222 23.10 14.16 42.47 3.42
129 130 0.394192 AAAGAAAAAGGCTGGCTGGC 59.606 50.000 3.84 10.02 42.15 4.85
130 131 2.102925 TGAAAAGAAAAAGGCTGGCTGG 59.897 45.455 3.84 0.00 0.00 4.85
131 132 3.457610 TGAAAAGAAAAAGGCTGGCTG 57.542 42.857 3.84 0.00 0.00 4.85
132 133 3.899980 AGATGAAAAGAAAAAGGCTGGCT 59.100 39.130 0.00 0.00 0.00 4.75
133 134 4.263018 AGATGAAAAGAAAAAGGCTGGC 57.737 40.909 0.00 0.00 0.00 4.85
134 135 5.011431 AGGAAGATGAAAAGAAAAAGGCTGG 59.989 40.000 0.00 0.00 0.00 4.85
135 136 6.015603 AGAGGAAGATGAAAAGAAAAAGGCTG 60.016 38.462 0.00 0.00 0.00 4.85
136 137 6.073981 AGAGGAAGATGAAAAGAAAAAGGCT 58.926 36.000 0.00 0.00 0.00 4.58
137 138 6.338214 AGAGGAAGATGAAAAGAAAAAGGC 57.662 37.500 0.00 0.00 0.00 4.35
138 139 6.718912 AGGAGAGGAAGATGAAAAGAAAAAGG 59.281 38.462 0.00 0.00 0.00 3.11
139 140 7.757941 AGGAGAGGAAGATGAAAAGAAAAAG 57.242 36.000 0.00 0.00 0.00 2.27
140 141 8.539117 AAAGGAGAGGAAGATGAAAAGAAAAA 57.461 30.769 0.00 0.00 0.00 1.94
141 142 8.539117 AAAAGGAGAGGAAGATGAAAAGAAAA 57.461 30.769 0.00 0.00 0.00 2.29
142 143 7.231519 GGAAAAGGAGAGGAAGATGAAAAGAAA 59.768 37.037 0.00 0.00 0.00 2.52
143 144 6.717084 GGAAAAGGAGAGGAAGATGAAAAGAA 59.283 38.462 0.00 0.00 0.00 2.52
144 145 6.183361 TGGAAAAGGAGAGGAAGATGAAAAGA 60.183 38.462 0.00 0.00 0.00 2.52
145 146 6.006449 TGGAAAAGGAGAGGAAGATGAAAAG 58.994 40.000 0.00 0.00 0.00 2.27
146 147 5.952387 TGGAAAAGGAGAGGAAGATGAAAA 58.048 37.500 0.00 0.00 0.00 2.29
147 148 5.582950 TGGAAAAGGAGAGGAAGATGAAA 57.417 39.130 0.00 0.00 0.00 2.69
148 149 5.503927 CATGGAAAAGGAGAGGAAGATGAA 58.496 41.667 0.00 0.00 0.00 2.57
149 150 4.080129 CCATGGAAAAGGAGAGGAAGATGA 60.080 45.833 5.56 0.00 0.00 2.92
150 151 4.080129 TCCATGGAAAAGGAGAGGAAGATG 60.080 45.833 13.46 0.00 0.00 2.90
151 152 4.114597 TCCATGGAAAAGGAGAGGAAGAT 58.885 43.478 13.46 0.00 0.00 2.40
152 153 3.531059 TCCATGGAAAAGGAGAGGAAGA 58.469 45.455 13.46 0.00 0.00 2.87
153 154 4.013050 GTTCCATGGAAAAGGAGAGGAAG 58.987 47.826 28.64 0.00 34.64 3.46
154 155 3.657727 AGTTCCATGGAAAAGGAGAGGAA 59.342 43.478 28.64 0.00 35.75 3.36
155 156 3.009473 CAGTTCCATGGAAAAGGAGAGGA 59.991 47.826 28.64 0.00 35.75 3.71
156 157 3.350833 CAGTTCCATGGAAAAGGAGAGG 58.649 50.000 28.64 8.36 35.75 3.69
157 158 2.751806 GCAGTTCCATGGAAAAGGAGAG 59.248 50.000 28.64 13.60 35.75 3.20
158 159 2.376518 AGCAGTTCCATGGAAAAGGAGA 59.623 45.455 28.64 1.79 35.75 3.71
159 160 2.800250 AGCAGTTCCATGGAAAAGGAG 58.200 47.619 28.64 16.49 35.75 3.69
160 161 2.978156 AGCAGTTCCATGGAAAAGGA 57.022 45.000 28.64 3.49 35.75 3.36
161 162 3.612479 CGAAAGCAGTTCCATGGAAAAGG 60.612 47.826 28.64 20.18 35.75 3.11
162 163 3.004734 ACGAAAGCAGTTCCATGGAAAAG 59.995 43.478 28.64 22.81 35.75 2.27
163 164 2.955660 ACGAAAGCAGTTCCATGGAAAA 59.044 40.909 28.64 5.22 35.75 2.29
164 165 2.293122 CACGAAAGCAGTTCCATGGAAA 59.707 45.455 28.64 10.48 35.75 3.13
165 166 1.879380 CACGAAAGCAGTTCCATGGAA 59.121 47.619 23.63 23.63 31.99 3.53
166 167 1.202758 ACACGAAAGCAGTTCCATGGA 60.203 47.619 11.44 11.44 31.99 3.41
167 168 1.197721 GACACGAAAGCAGTTCCATGG 59.802 52.381 4.97 4.97 31.99 3.66
168 169 1.197721 GGACACGAAAGCAGTTCCATG 59.802 52.381 0.00 0.00 31.99 3.66
169 170 1.523758 GGACACGAAAGCAGTTCCAT 58.476 50.000 0.00 0.00 31.99 3.41
170 171 0.534203 GGGACACGAAAGCAGTTCCA 60.534 55.000 0.00 0.00 37.85 3.53
171 172 2.244946 GGGACACGAAAGCAGTTCC 58.755 57.895 0.00 0.00 31.94 3.62
189 190 1.506262 CAAAAGGCCGGATGGAACG 59.494 57.895 5.05 0.00 37.49 3.95
190 191 1.890174 CCAAAAGGCCGGATGGAAC 59.110 57.895 16.12 0.00 37.49 3.62
191 192 1.981853 GCCAAAAGGCCGGATGGAA 60.982 57.895 22.94 0.00 37.49 3.53
192 193 2.362375 GCCAAAAGGCCGGATGGA 60.362 61.111 22.94 0.00 37.49 3.41
193 194 3.460868 GGCCAAAAGGCCGGATGG 61.461 66.667 5.05 16.64 45.53 3.51
200 201 2.644992 CACGAGTGGCCAAAAGGC 59.355 61.111 7.24 0.00 42.78 4.35
201 202 1.733402 TTGCACGAGTGGCCAAAAGG 61.733 55.000 7.24 0.00 0.00 3.11
202 203 0.594796 GTTGCACGAGTGGCCAAAAG 60.595 55.000 7.24 3.63 0.00 2.27
203 204 1.315981 TGTTGCACGAGTGGCCAAAA 61.316 50.000 7.24 0.00 0.00 2.44
204 205 1.315981 TTGTTGCACGAGTGGCCAAA 61.316 50.000 7.24 0.00 0.00 3.28
205 206 1.750780 TTGTTGCACGAGTGGCCAA 60.751 52.632 7.24 0.00 0.00 4.52
206 207 2.124529 TTGTTGCACGAGTGGCCA 60.125 55.556 0.00 0.00 0.00 5.36
207 208 2.186826 AGTTGTTGCACGAGTGGCC 61.187 57.895 0.00 0.00 0.00 5.36
208 209 1.009675 CAGTTGTTGCACGAGTGGC 60.010 57.895 5.32 0.00 30.85 5.01
209 210 0.732571 AACAGTTGTTGCACGAGTGG 59.267 50.000 5.32 0.00 37.27 4.00
210 211 2.176369 CAAACAGTTGTTGCACGAGTG 58.824 47.619 0.00 0.00 38.58 3.51
211 212 1.132262 CCAAACAGTTGTTGCACGAGT 59.868 47.619 0.00 0.00 38.44 4.18
212 213 1.533756 CCCAAACAGTTGTTGCACGAG 60.534 52.381 0.00 0.00 38.44 4.18
213 214 0.453793 CCCAAACAGTTGTTGCACGA 59.546 50.000 0.00 0.00 38.44 4.35
214 215 0.453793 TCCCAAACAGTTGTTGCACG 59.546 50.000 0.00 0.00 38.44 5.34
215 216 1.748493 TCTCCCAAACAGTTGTTGCAC 59.252 47.619 0.00 0.00 38.44 4.57
216 217 2.023673 CTCTCCCAAACAGTTGTTGCA 58.976 47.619 0.00 0.00 38.44 4.08
217 218 1.269257 GCTCTCCCAAACAGTTGTTGC 60.269 52.381 0.00 0.00 38.44 4.17
218 219 1.338020 GGCTCTCCCAAACAGTTGTTG 59.662 52.381 0.00 0.00 38.44 3.33
219 220 1.692411 GGCTCTCCCAAACAGTTGTT 58.308 50.000 0.00 0.00 40.50 2.83
220 221 0.535102 CGGCTCTCCCAAACAGTTGT 60.535 55.000 0.00 0.00 32.40 3.32
221 222 0.250295 TCGGCTCTCCCAAACAGTTG 60.250 55.000 0.00 0.00 34.25 3.16
222 223 0.693049 ATCGGCTCTCCCAAACAGTT 59.307 50.000 0.00 0.00 0.00 3.16
223 224 0.036010 CATCGGCTCTCCCAAACAGT 60.036 55.000 0.00 0.00 0.00 3.55
224 225 0.250234 TCATCGGCTCTCCCAAACAG 59.750 55.000 0.00 0.00 0.00 3.16
225 226 0.690192 TTCATCGGCTCTCCCAAACA 59.310 50.000 0.00 0.00 0.00 2.83
226 227 1.087501 GTTCATCGGCTCTCCCAAAC 58.912 55.000 0.00 0.00 0.00 2.93
227 228 0.035439 GGTTCATCGGCTCTCCCAAA 60.035 55.000 0.00 0.00 0.00 3.28
228 229 1.602237 GGTTCATCGGCTCTCCCAA 59.398 57.895 0.00 0.00 0.00 4.12
229 230 2.367202 GGGTTCATCGGCTCTCCCA 61.367 63.158 0.00 0.00 35.43 4.37
230 231 2.506472 GGGTTCATCGGCTCTCCC 59.494 66.667 0.00 0.00 0.00 4.30
231 232 2.506472 GGGGTTCATCGGCTCTCC 59.494 66.667 0.00 0.00 0.00 3.71
232 233 2.506472 GGGGGTTCATCGGCTCTC 59.494 66.667 0.00 0.00 0.00 3.20
246 247 4.722700 CTGTGTCAAGGCCGGGGG 62.723 72.222 2.18 0.00 0.00 5.40
247 248 2.876368 GATCTGTGTCAAGGCCGGGG 62.876 65.000 2.18 0.00 0.00 5.73
248 249 1.450312 GATCTGTGTCAAGGCCGGG 60.450 63.158 2.18 0.00 0.00 5.73
249 250 1.811266 CGATCTGTGTCAAGGCCGG 60.811 63.158 0.00 0.00 0.00 6.13
250 251 2.456119 GCGATCTGTGTCAAGGCCG 61.456 63.158 0.00 0.00 0.00 6.13
251 252 2.109126 GGCGATCTGTGTCAAGGCC 61.109 63.158 0.00 0.00 0.00 5.19
252 253 0.745845 ATGGCGATCTGTGTCAAGGC 60.746 55.000 0.00 0.00 0.00 4.35
253 254 1.399440 CAATGGCGATCTGTGTCAAGG 59.601 52.381 0.00 0.00 0.00 3.61
254 255 2.079158 ACAATGGCGATCTGTGTCAAG 58.921 47.619 0.00 0.00 0.00 3.02
255 256 2.076100 GACAATGGCGATCTGTGTCAA 58.924 47.619 7.03 0.00 38.74 3.18
256 257 1.725641 GACAATGGCGATCTGTGTCA 58.274 50.000 7.03 0.00 38.74 3.58
257 258 0.647410 CGACAATGGCGATCTGTGTC 59.353 55.000 0.22 2.81 36.17 3.67
258 259 0.037326 ACGACAATGGCGATCTGTGT 60.037 50.000 18.23 0.00 0.00 3.72
259 260 0.647410 GACGACAATGGCGATCTGTG 59.353 55.000 18.23 0.00 0.00 3.66
260 261 0.802222 CGACGACAATGGCGATCTGT 60.802 55.000 18.23 0.00 0.00 3.41
261 262 0.802222 ACGACGACAATGGCGATCTG 60.802 55.000 18.23 3.86 0.00 2.90
262 263 0.802222 CACGACGACAATGGCGATCT 60.802 55.000 18.23 0.00 0.00 2.75
263 264 1.076533 ACACGACGACAATGGCGATC 61.077 55.000 18.23 8.29 0.00 3.69
264 265 0.669318 AACACGACGACAATGGCGAT 60.669 50.000 18.23 0.00 0.00 4.58
265 266 1.279527 GAACACGACGACAATGGCGA 61.280 55.000 18.23 0.00 0.00 5.54
266 267 1.129809 GAACACGACGACAATGGCG 59.870 57.895 7.07 7.07 0.00 5.69
267 268 0.949105 AGGAACACGACGACAATGGC 60.949 55.000 0.00 0.00 0.00 4.40
268 269 1.068474 GAGGAACACGACGACAATGG 58.932 55.000 0.00 0.00 0.00 3.16
269 270 1.721389 CTGAGGAACACGACGACAATG 59.279 52.381 0.00 0.00 0.00 2.82
270 271 1.611977 TCTGAGGAACACGACGACAAT 59.388 47.619 0.00 0.00 0.00 2.71
271 272 1.026584 TCTGAGGAACACGACGACAA 58.973 50.000 0.00 0.00 0.00 3.18
272 273 1.199327 GATCTGAGGAACACGACGACA 59.801 52.381 0.00 0.00 0.00 4.35
273 274 1.467713 GGATCTGAGGAACACGACGAC 60.468 57.143 0.00 0.00 0.00 4.34
274 275 0.809385 GGATCTGAGGAACACGACGA 59.191 55.000 0.00 0.00 0.00 4.20
275 276 0.526211 TGGATCTGAGGAACACGACG 59.474 55.000 0.00 0.00 0.00 5.12
276 277 1.737363 GCTGGATCTGAGGAACACGAC 60.737 57.143 0.00 0.00 0.00 4.34
277 278 0.532573 GCTGGATCTGAGGAACACGA 59.467 55.000 0.00 0.00 0.00 4.35
278 279 0.460987 GGCTGGATCTGAGGAACACG 60.461 60.000 0.00 0.00 0.00 4.49
279 280 0.908198 AGGCTGGATCTGAGGAACAC 59.092 55.000 0.00 0.00 0.00 3.32
280 281 1.198713 GAGGCTGGATCTGAGGAACA 58.801 55.000 0.00 0.00 0.00 3.18
281 282 0.467804 GGAGGCTGGATCTGAGGAAC 59.532 60.000 0.00 0.00 0.00 3.62
282 283 1.045350 CGGAGGCTGGATCTGAGGAA 61.045 60.000 0.00 0.00 0.00 3.36
283 284 1.456518 CGGAGGCTGGATCTGAGGA 60.457 63.158 0.00 0.00 0.00 3.71
284 285 3.136750 CGGAGGCTGGATCTGAGG 58.863 66.667 0.00 0.00 0.00 3.86
285 286 2.420890 GCGGAGGCTGGATCTGAG 59.579 66.667 0.00 0.00 35.83 3.35
306 307 0.739813 ACTTATGACGAAGCGGGTGC 60.740 55.000 0.00 0.00 43.24 5.01
307 308 1.659098 GAACTTATGACGAAGCGGGTG 59.341 52.381 0.00 0.00 0.00 4.61
308 309 1.274167 TGAACTTATGACGAAGCGGGT 59.726 47.619 0.00 0.00 0.00 5.28
309 310 2.004583 TGAACTTATGACGAAGCGGG 57.995 50.000 0.00 0.00 0.00 6.13
310 311 3.182572 GCTATGAACTTATGACGAAGCGG 59.817 47.826 0.00 0.00 0.00 5.52
311 312 3.182572 GGCTATGAACTTATGACGAAGCG 59.817 47.826 0.00 0.00 0.00 4.68
312 313 4.372656 AGGCTATGAACTTATGACGAAGC 58.627 43.478 0.00 0.00 0.00 3.86
313 314 6.142480 CGTAAGGCTATGAACTTATGACGAAG 59.858 42.308 0.00 0.00 38.05 3.79
314 315 5.975344 CGTAAGGCTATGAACTTATGACGAA 59.025 40.000 0.00 0.00 38.05 3.85
315 316 5.066893 ACGTAAGGCTATGAACTTATGACGA 59.933 40.000 9.80 0.00 46.39 4.20
316 317 5.279384 ACGTAAGGCTATGAACTTATGACG 58.721 41.667 9.80 4.30 46.39 4.35
317 318 8.700644 CAATACGTAAGGCTATGAACTTATGAC 58.299 37.037 0.00 0.00 46.39 3.06
318 319 8.418662 ACAATACGTAAGGCTATGAACTTATGA 58.581 33.333 0.00 0.00 46.39 2.15
319 320 8.589335 ACAATACGTAAGGCTATGAACTTATG 57.411 34.615 0.00 0.00 46.39 1.90
320 321 9.909644 CTACAATACGTAAGGCTATGAACTTAT 57.090 33.333 0.00 0.00 46.39 1.73
321 322 9.123902 TCTACAATACGTAAGGCTATGAACTTA 57.876 33.333 0.00 0.00 46.39 2.24
322 323 8.004087 TCTACAATACGTAAGGCTATGAACTT 57.996 34.615 0.00 0.00 46.39 2.66
323 324 7.501559 TCTCTACAATACGTAAGGCTATGAACT 59.498 37.037 0.00 0.00 46.39 3.01
324 325 7.646314 TCTCTACAATACGTAAGGCTATGAAC 58.354 38.462 0.00 0.00 46.39 3.18
325 326 7.812690 TCTCTACAATACGTAAGGCTATGAA 57.187 36.000 0.00 0.00 46.39 2.57
326 327 7.812690 TTCTCTACAATACGTAAGGCTATGA 57.187 36.000 0.00 0.00 46.39 2.15
327 328 8.297426 TCATTCTCTACAATACGTAAGGCTATG 58.703 37.037 0.00 0.00 46.39 2.23
328 329 8.405418 TCATTCTCTACAATACGTAAGGCTAT 57.595 34.615 0.00 0.00 46.39 2.97
329 330 7.812690 TCATTCTCTACAATACGTAAGGCTA 57.187 36.000 0.00 0.00 46.39 3.93
330 331 6.710597 TCATTCTCTACAATACGTAAGGCT 57.289 37.500 0.00 0.00 46.39 4.58
331 332 7.948278 AATCATTCTCTACAATACGTAAGGC 57.052 36.000 0.00 0.00 46.39 4.35
332 333 8.765219 CCAAATCATTCTCTACAATACGTAAGG 58.235 37.037 0.00 0.00 46.39 2.69
334 335 9.093970 CACCAAATCATTCTCTACAATACGTAA 57.906 33.333 0.00 0.00 0.00 3.18
335 336 7.223971 GCACCAAATCATTCTCTACAATACGTA 59.776 37.037 0.00 0.00 0.00 3.57
336 337 6.037172 GCACCAAATCATTCTCTACAATACGT 59.963 38.462 0.00 0.00 0.00 3.57
337 338 6.037062 TGCACCAAATCATTCTCTACAATACG 59.963 38.462 0.00 0.00 0.00 3.06
338 339 7.320443 TGCACCAAATCATTCTCTACAATAC 57.680 36.000 0.00 0.00 0.00 1.89
339 340 7.041848 CGATGCACCAAATCATTCTCTACAATA 60.042 37.037 0.00 0.00 0.00 1.90
340 341 6.238566 CGATGCACCAAATCATTCTCTACAAT 60.239 38.462 0.00 0.00 0.00 2.71
341 342 5.065090 CGATGCACCAAATCATTCTCTACAA 59.935 40.000 0.00 0.00 0.00 2.41
342 343 4.571984 CGATGCACCAAATCATTCTCTACA 59.428 41.667 0.00 0.00 0.00 2.74
343 344 4.811024 TCGATGCACCAAATCATTCTCTAC 59.189 41.667 0.00 0.00 0.00 2.59
344 345 5.022282 TCGATGCACCAAATCATTCTCTA 57.978 39.130 0.00 0.00 0.00 2.43
345 346 3.877559 TCGATGCACCAAATCATTCTCT 58.122 40.909 0.00 0.00 0.00 3.10
346 347 4.825546 ATCGATGCACCAAATCATTCTC 57.174 40.909 0.00 0.00 0.00 2.87
347 348 6.889301 ATTATCGATGCACCAAATCATTCT 57.111 33.333 8.54 0.00 0.00 2.40
348 349 7.140705 TCAATTATCGATGCACCAAATCATTC 58.859 34.615 8.54 0.00 0.00 2.67
349 350 7.041635 TCAATTATCGATGCACCAAATCATT 57.958 32.000 8.54 0.00 0.00 2.57
350 351 6.638096 TCAATTATCGATGCACCAAATCAT 57.362 33.333 8.54 0.00 0.00 2.45
351 352 6.638096 ATCAATTATCGATGCACCAAATCA 57.362 33.333 8.54 0.00 0.00 2.57
352 353 7.140705 TCAATCAATTATCGATGCACCAAATC 58.859 34.615 8.54 0.00 0.00 2.17
353 354 7.041635 TCAATCAATTATCGATGCACCAAAT 57.958 32.000 8.54 0.00 0.00 2.32
354 355 6.448207 TCAATCAATTATCGATGCACCAAA 57.552 33.333 8.54 0.00 0.00 3.28
355 356 6.566376 CGATCAATCAATTATCGATGCACCAA 60.566 38.462 8.54 0.00 43.96 3.67
356 357 5.106987 CGATCAATCAATTATCGATGCACCA 60.107 40.000 8.54 0.00 43.96 4.17
357 358 5.106948 ACGATCAATCAATTATCGATGCACC 60.107 40.000 8.54 0.00 43.96 5.01
358 359 5.787062 CACGATCAATCAATTATCGATGCAC 59.213 40.000 8.54 0.00 43.96 4.57
359 360 5.615325 GCACGATCAATCAATTATCGATGCA 60.615 40.000 8.54 0.00 43.96 3.96
360 361 4.785055 GCACGATCAATCAATTATCGATGC 59.215 41.667 8.54 13.54 43.96 3.91
361 362 5.787062 GTGCACGATCAATCAATTATCGATG 59.213 40.000 8.54 9.06 43.96 3.84
362 363 5.698089 AGTGCACGATCAATCAATTATCGAT 59.302 36.000 12.01 2.16 43.96 3.59
363 364 5.049828 AGTGCACGATCAATCAATTATCGA 58.950 37.500 12.01 0.00 43.96 3.59
364 365 5.334435 AGTGCACGATCAATCAATTATCG 57.666 39.130 12.01 6.10 46.02 2.92
365 366 6.619446 GCCTAGTGCACGATCAATCAATTATC 60.619 42.308 12.01 0.00 40.77 1.75
366 367 5.180117 GCCTAGTGCACGATCAATCAATTAT 59.820 40.000 12.01 0.00 40.77 1.28
367 368 4.511454 GCCTAGTGCACGATCAATCAATTA 59.489 41.667 12.01 0.00 40.77 1.40
368 369 3.313526 GCCTAGTGCACGATCAATCAATT 59.686 43.478 12.01 0.00 40.77 2.32
369 370 2.874701 GCCTAGTGCACGATCAATCAAT 59.125 45.455 12.01 0.00 40.77 2.57
370 371 2.279741 GCCTAGTGCACGATCAATCAA 58.720 47.619 12.01 0.00 40.77 2.57
371 372 1.939974 GCCTAGTGCACGATCAATCA 58.060 50.000 12.01 0.00 40.77 2.57
394 395 9.524496 CGCACCCCTTGTACCTATATATATATA 57.476 37.037 11.21 11.21 0.00 0.86
395 396 8.229605 TCGCACCCCTTGTACCTATATATATAT 58.770 37.037 10.10 10.10 0.00 0.86
396 397 7.503566 GTCGCACCCCTTGTACCTATATATATA 59.496 40.741 2.49 2.49 0.00 0.86
397 398 6.323225 GTCGCACCCCTTGTACCTATATATAT 59.677 42.308 0.00 0.00 0.00 0.86
398 399 5.653769 GTCGCACCCCTTGTACCTATATATA 59.346 44.000 0.00 0.00 0.00 0.86
399 400 4.465305 GTCGCACCCCTTGTACCTATATAT 59.535 45.833 0.00 0.00 0.00 0.86
400 401 3.828451 GTCGCACCCCTTGTACCTATATA 59.172 47.826 0.00 0.00 0.00 0.86
401 402 2.631545 GTCGCACCCCTTGTACCTATAT 59.368 50.000 0.00 0.00 0.00 0.86
402 403 2.034124 GTCGCACCCCTTGTACCTATA 58.966 52.381 0.00 0.00 0.00 1.31
403 404 0.828677 GTCGCACCCCTTGTACCTAT 59.171 55.000 0.00 0.00 0.00 2.57
404 405 0.251922 AGTCGCACCCCTTGTACCTA 60.252 55.000 0.00 0.00 0.00 3.08
405 406 1.535687 AGTCGCACCCCTTGTACCT 60.536 57.895 0.00 0.00 0.00 3.08
406 407 1.375523 CAGTCGCACCCCTTGTACC 60.376 63.158 0.00 0.00 0.00 3.34
407 408 1.375523 CCAGTCGCACCCCTTGTAC 60.376 63.158 0.00 0.00 0.00 2.90
408 409 0.542467 TACCAGTCGCACCCCTTGTA 60.542 55.000 0.00 0.00 0.00 2.41
409 410 1.827399 CTACCAGTCGCACCCCTTGT 61.827 60.000 0.00 0.00 0.00 3.16
410 411 1.079127 CTACCAGTCGCACCCCTTG 60.079 63.158 0.00 0.00 0.00 3.61
411 412 2.291043 CCTACCAGTCGCACCCCTT 61.291 63.158 0.00 0.00 0.00 3.95
412 413 2.683933 CCTACCAGTCGCACCCCT 60.684 66.667 0.00 0.00 0.00 4.79
413 414 4.468689 GCCTACCAGTCGCACCCC 62.469 72.222 0.00 0.00 0.00 4.95
414 415 4.468689 GGCCTACCAGTCGCACCC 62.469 72.222 0.00 0.00 35.26 4.61
415 416 4.468689 GGGCCTACCAGTCGCACC 62.469 72.222 0.84 0.00 39.85 5.01
416 417 4.814294 CGGGCCTACCAGTCGCAC 62.814 72.222 0.84 0.00 40.22 5.34
418 419 3.766691 TTCGGGCCTACCAGTCGC 61.767 66.667 0.84 0.00 40.22 5.19
419 420 2.183555 GTTCGGGCCTACCAGTCG 59.816 66.667 0.84 0.00 40.22 4.18
420 421 2.582978 GGTTCGGGCCTACCAGTC 59.417 66.667 17.06 0.00 40.22 3.51
421 422 3.387947 CGGTTCGGGCCTACCAGT 61.388 66.667 20.45 0.00 40.22 4.00
422 423 2.459202 AAACGGTTCGGGCCTACCAG 62.459 60.000 20.45 15.76 40.22 4.00
423 424 2.054473 AAAACGGTTCGGGCCTACCA 62.054 55.000 20.45 0.00 40.22 3.25
424 425 1.300971 GAAAACGGTTCGGGCCTACC 61.301 60.000 13.15 13.15 0.00 3.18
425 426 0.321034 AGAAAACGGTTCGGGCCTAC 60.321 55.000 0.84 0.00 0.00 3.18
426 427 1.205417 CTAGAAAACGGTTCGGGCCTA 59.795 52.381 0.84 0.00 0.00 3.93
427 428 0.036671 CTAGAAAACGGTTCGGGCCT 60.037 55.000 0.84 0.00 0.00 5.19
817 823 4.402528 CCATGTCGCCCGTCCCAA 62.403 66.667 0.00 0.00 0.00 4.12
1053 1061 2.698797 CCCTATCGGGTTAAAGCTCAGA 59.301 50.000 0.00 0.00 46.12 3.27
1069 1077 3.408634 CAACAAACGTGTTCTCCCCTAT 58.591 45.455 0.00 0.00 45.00 2.57
1188 1196 3.842923 CAGTCCGATGGCCGAGCT 61.843 66.667 0.00 0.00 41.76 4.09
1191 1199 2.682136 TTCCAGTCCGATGGCCGA 60.682 61.111 0.00 0.00 40.41 5.54
1200 1208 3.133141 AGCTTCTCAAACTTCCAGTCC 57.867 47.619 0.00 0.00 0.00 3.85
1221 1229 5.023514 TGATTACCCTAGCCCATATCTGA 57.976 43.478 0.00 0.00 0.00 3.27
1278 1286 0.464373 TCATCCCTGCAATTCGCTCC 60.464 55.000 0.00 0.00 43.06 4.70
1341 1349 2.007547 GCTCTAAGGGACTCGCCAAAC 61.008 57.143 0.00 0.00 38.49 2.93
1387 1395 0.183492 TGCACCCATCTCATTAGGGC 59.817 55.000 0.00 0.00 46.88 5.19
1398 1406 1.747206 GCCGATTCTAACTGCACCCAT 60.747 52.381 0.00 0.00 0.00 4.00
1467 1475 4.560513 CGGCCACACAAGAAACCAAAATAT 60.561 41.667 2.24 0.00 0.00 1.28
1474 1482 1.388837 AACCGGCCACACAAGAAACC 61.389 55.000 0.00 0.00 0.00 3.27
1481 1490 4.572571 GACCCAACCGGCCACACA 62.573 66.667 0.00 0.00 33.26 3.72
1492 1501 1.927487 AAAGCATCTGCATGACCCAA 58.073 45.000 4.79 0.00 45.16 4.12
1494 1503 2.613691 CAAAAAGCATCTGCATGACCC 58.386 47.619 4.79 0.00 45.16 4.46
1523 1532 1.977854 CATCATCATCCCGTTCCCCTA 59.022 52.381 0.00 0.00 0.00 3.53
1626 1635 3.083997 CTGGCGCCCTACCTTCCT 61.084 66.667 26.77 0.00 0.00 3.36
1633 1642 2.123683 CTCTCTCCTGGCGCCCTA 60.124 66.667 26.77 4.79 0.00 3.53
1731 1740 3.402628 AACTGATACACTGCGTTCCTT 57.597 42.857 0.00 0.00 0.00 3.36
1783 1792 3.647636 TGTCATAGCTCCTTCTAAGGCT 58.352 45.455 3.73 1.78 46.06 4.58
1785 1794 5.396213 AGCTTTGTCATAGCTCCTTCTAAGG 60.396 44.000 11.57 2.09 45.52 2.69
1787 1796 5.683876 AGCTTTGTCATAGCTCCTTCTAA 57.316 39.130 11.57 0.00 45.52 2.10
1859 1868 2.613026 TGACATATTAGTGTGGCCCG 57.387 50.000 0.00 0.00 31.16 6.13
1874 1883 3.708403 AGATCATGAGCTGGTTTGACA 57.292 42.857 13.77 0.00 0.00 3.58
1902 1911 8.083828 TGGCTCTCTTCTTATTCAAAGTATCT 57.916 34.615 0.00 0.00 0.00 1.98
2151 2163 4.351874 TGTTTCCCTCAATCTTCGTCTT 57.648 40.909 0.00 0.00 0.00 3.01
2319 2331 2.104281 GGTCGCTACCCACATTCCTTAT 59.896 50.000 0.00 0.00 40.21 1.73
2352 2364 6.683715 GCTTGGTATAAAAGCCTGTAAAACA 58.316 36.000 9.34 0.00 43.45 2.83
2370 2382 3.217626 CTTTCACTCCTCTTTGCTTGGT 58.782 45.455 0.00 0.00 0.00 3.67
2413 2426 2.366266 ACTTTGACACCGTAGCCACTTA 59.634 45.455 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.