Multiple sequence alignment - TraesCS5B01G225000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G225000 chr5B 100.000 2414 0 0 1 2414 400531579 400529166 0.000000e+00 4458
1 TraesCS5B01G225000 chr5B 93.112 1655 91 8 783 2414 400480026 400478372 0.000000e+00 2403
2 TraesCS5B01G225000 chr5B 93.108 1654 88 11 783 2414 400461894 400460245 0.000000e+00 2399
3 TraesCS5B01G225000 chr5B 85.385 1560 158 29 784 2286 309165487 309167033 0.000000e+00 1554
4 TraesCS5B01G225000 chr2A 86.104 1540 141 30 791 2277 188809015 188807496 0.000000e+00 1591
5 TraesCS5B01G225000 chr2A 85.629 167 22 2 121 286 684247345 684247180 8.870000e-40 174
6 TraesCS5B01G225000 chr7B 82.034 1603 159 56 783 2286 507564915 507566487 0.000000e+00 1245
7 TraesCS5B01G225000 chr7B 85.847 1074 102 22 783 1816 232331826 232332889 0.000000e+00 1096
8 TraesCS5B01G225000 chr7B 81.775 845 77 46 1473 2280 186127886 186128690 9.410000e-179 636
9 TraesCS5B01G225000 chr7B 85.549 173 20 4 121 289 570352433 570352604 2.470000e-40 176
10 TraesCS5B01G225000 chr3B 87.856 1054 101 14 783 1811 60031263 60032314 0.000000e+00 1212
11 TraesCS5B01G225000 chr3B 84.507 852 81 31 1479 2285 621274676 621275521 0.000000e+00 795
12 TraesCS5B01G225000 chr3B 83.630 898 89 31 1433 2285 621241948 621242832 0.000000e+00 791
13 TraesCS5B01G225000 chr3B 89.957 468 46 1 1815 2281 544950290 544949823 9.550000e-169 603
14 TraesCS5B01G225000 chr1D 88.325 985 74 18 1111 2059 2715305 2714326 0.000000e+00 1144
15 TraesCS5B01G225000 chr2D 86.484 1058 100 25 783 1816 510997998 510999036 0.000000e+00 1122
16 TraesCS5B01G225000 chr2D 87.524 513 47 7 285 781 474089193 474089704 5.790000e-161 577
17 TraesCS5B01G225000 chr1A 87.164 1005 73 28 1111 2063 2488821 2487821 0.000000e+00 1090
18 TraesCS5B01G225000 chr1A 91.463 82 6 1 283 363 501331586 501331667 7.050000e-21 111
19 TraesCS5B01G225000 chr7D 84.466 824 98 19 800 1604 635880415 635879603 0.000000e+00 785
20 TraesCS5B01G225000 chr7D 84.531 821 95 21 800 1601 85642061 85642868 0.000000e+00 784
21 TraesCS5B01G225000 chr7D 89.914 466 46 1 1812 2276 46426149 46426614 1.240000e-167 599
22 TraesCS5B01G225000 chr7D 86.061 165 23 0 125 289 454079247 454079411 6.860000e-41 178
23 TraesCS5B01G225000 chr7D 85.890 163 23 0 124 286 77037415 77037253 8.870000e-40 174
24 TraesCS5B01G225000 chr6D 91.416 466 37 3 1812 2276 260078568 260078105 9.410000e-179 636
25 TraesCS5B01G225000 chr6D 88.819 474 50 2 1812 2282 407644653 407644180 1.610000e-161 579
26 TraesCS5B01G225000 chr4D 86.473 584 59 12 1717 2281 349909611 349910193 7.330000e-175 623
27 TraesCS5B01G225000 chr1B 88.544 515 37 10 290 783 347562383 347562896 2.650000e-169 604
28 TraesCS5B01G225000 chr1B 87.195 164 19 2 130 292 55976130 55975968 4.100000e-43 185
29 TraesCS5B01G225000 chr1B 90.000 80 8 0 285 364 75932842 75932763 1.180000e-18 104
30 TraesCS5B01G225000 chr6A 85.839 572 71 7 1712 2276 370154104 370154672 1.240000e-167 599
31 TraesCS5B01G225000 chr6A 89.759 166 17 0 122 287 297641217 297641382 1.880000e-51 213
32 TraesCS5B01G225000 chr3D 89.407 472 47 3 1812 2281 294596170 294596640 2.070000e-165 592
33 TraesCS5B01G225000 chr4A 88.475 295 33 1 1815 2108 80710304 80710010 2.950000e-94 355
34 TraesCS5B01G225000 chr4A 85.714 231 26 7 419 645 339626061 339625834 1.120000e-58 237
35 TraesCS5B01G225000 chr2B 85.427 199 23 6 125 320 50021479 50021674 4.070000e-48 202
36 TraesCS5B01G225000 chr7A 86.747 166 22 0 124 289 451519973 451519808 4.100000e-43 185
37 TraesCS5B01G225000 chrUn 85.976 164 23 0 125 288 47689750 47689587 2.470000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G225000 chr5B 400529166 400531579 2413 True 4458 4458 100.000 1 2414 1 chr5B.!!$R3 2413
1 TraesCS5B01G225000 chr5B 400478372 400480026 1654 True 2403 2403 93.112 783 2414 1 chr5B.!!$R2 1631
2 TraesCS5B01G225000 chr5B 400460245 400461894 1649 True 2399 2399 93.108 783 2414 1 chr5B.!!$R1 1631
3 TraesCS5B01G225000 chr5B 309165487 309167033 1546 False 1554 1554 85.385 784 2286 1 chr5B.!!$F1 1502
4 TraesCS5B01G225000 chr2A 188807496 188809015 1519 True 1591 1591 86.104 791 2277 1 chr2A.!!$R1 1486
5 TraesCS5B01G225000 chr7B 507564915 507566487 1572 False 1245 1245 82.034 783 2286 1 chr7B.!!$F3 1503
6 TraesCS5B01G225000 chr7B 232331826 232332889 1063 False 1096 1096 85.847 783 1816 1 chr7B.!!$F2 1033
7 TraesCS5B01G225000 chr7B 186127886 186128690 804 False 636 636 81.775 1473 2280 1 chr7B.!!$F1 807
8 TraesCS5B01G225000 chr3B 60031263 60032314 1051 False 1212 1212 87.856 783 1811 1 chr3B.!!$F1 1028
9 TraesCS5B01G225000 chr3B 621274676 621275521 845 False 795 795 84.507 1479 2285 1 chr3B.!!$F3 806
10 TraesCS5B01G225000 chr3B 621241948 621242832 884 False 791 791 83.630 1433 2285 1 chr3B.!!$F2 852
11 TraesCS5B01G225000 chr1D 2714326 2715305 979 True 1144 1144 88.325 1111 2059 1 chr1D.!!$R1 948
12 TraesCS5B01G225000 chr2D 510997998 510999036 1038 False 1122 1122 86.484 783 1816 1 chr2D.!!$F2 1033
13 TraesCS5B01G225000 chr2D 474089193 474089704 511 False 577 577 87.524 285 781 1 chr2D.!!$F1 496
14 TraesCS5B01G225000 chr1A 2487821 2488821 1000 True 1090 1090 87.164 1111 2063 1 chr1A.!!$R1 952
15 TraesCS5B01G225000 chr7D 635879603 635880415 812 True 785 785 84.466 800 1604 1 chr7D.!!$R2 804
16 TraesCS5B01G225000 chr7D 85642061 85642868 807 False 784 784 84.531 800 1601 1 chr7D.!!$F2 801
17 TraesCS5B01G225000 chr4D 349909611 349910193 582 False 623 623 86.473 1717 2281 1 chr4D.!!$F1 564
18 TraesCS5B01G225000 chr1B 347562383 347562896 513 False 604 604 88.544 290 783 1 chr1B.!!$F1 493
19 TraesCS5B01G225000 chr6A 370154104 370154672 568 False 599 599 85.839 1712 2276 1 chr6A.!!$F2 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 703 0.036952 TCTGCACTTGTAGGCTCTGC 60.037 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 2309 0.602905 CCCGTTGGACCAGACAAGTC 60.603 60.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.794714 TGGAGGGAGTAGAAGATGGC 58.205 55.000 0.00 0.00 0.00 4.40
21 22 1.008327 TGGAGGGAGTAGAAGATGGCA 59.992 52.381 0.00 0.00 0.00 4.92
22 23 1.414550 GGAGGGAGTAGAAGATGGCAC 59.585 57.143 0.00 0.00 0.00 5.01
23 24 1.067821 GAGGGAGTAGAAGATGGCACG 59.932 57.143 0.00 0.00 0.00 5.34
24 25 0.105039 GGGAGTAGAAGATGGCACGG 59.895 60.000 0.00 0.00 0.00 4.94
25 26 1.112113 GGAGTAGAAGATGGCACGGA 58.888 55.000 0.00 0.00 0.00 4.69
26 27 1.202428 GGAGTAGAAGATGGCACGGAC 60.202 57.143 0.00 0.00 0.00 4.79
27 28 1.476891 GAGTAGAAGATGGCACGGACA 59.523 52.381 0.00 0.00 0.00 4.02
28 29 1.478510 AGTAGAAGATGGCACGGACAG 59.521 52.381 0.00 0.00 0.00 3.51
29 30 1.476891 GTAGAAGATGGCACGGACAGA 59.523 52.381 0.00 0.00 0.00 3.41
30 31 0.534412 AGAAGATGGCACGGACAGAG 59.466 55.000 0.00 0.00 0.00 3.35
31 32 0.532573 GAAGATGGCACGGACAGAGA 59.467 55.000 0.00 0.00 0.00 3.10
32 33 1.137872 GAAGATGGCACGGACAGAGAT 59.862 52.381 0.00 0.00 0.00 2.75
33 34 1.198713 AGATGGCACGGACAGAGATT 58.801 50.000 0.00 0.00 0.00 2.40
34 35 1.556911 AGATGGCACGGACAGAGATTT 59.443 47.619 0.00 0.00 0.00 2.17
35 36 2.766263 AGATGGCACGGACAGAGATTTA 59.234 45.455 0.00 0.00 0.00 1.40
36 37 3.389329 AGATGGCACGGACAGAGATTTAT 59.611 43.478 0.00 0.00 0.00 1.40
37 38 3.179443 TGGCACGGACAGAGATTTATC 57.821 47.619 0.00 0.00 0.00 1.75
38 39 2.766263 TGGCACGGACAGAGATTTATCT 59.234 45.455 0.00 0.00 40.50 1.98
50 51 7.295322 CAGAGATTTATCTGTACCATCCAGA 57.705 40.000 0.00 0.00 41.52 3.86
51 52 7.151308 CAGAGATTTATCTGTACCATCCAGAC 58.849 42.308 0.00 0.00 41.47 3.51
52 53 7.015098 CAGAGATTTATCTGTACCATCCAGACT 59.985 40.741 0.00 0.00 41.47 3.24
53 54 7.566879 AGAGATTTATCTGTACCATCCAGACTT 59.433 37.037 0.00 0.00 41.47 3.01
54 55 8.783660 AGATTTATCTGTACCATCCAGACTTA 57.216 34.615 0.00 0.00 41.47 2.24
55 56 8.865090 AGATTTATCTGTACCATCCAGACTTAG 58.135 37.037 0.00 0.00 41.47 2.18
56 57 6.978674 TTATCTGTACCATCCAGACTTAGG 57.021 41.667 0.00 0.00 41.47 2.69
57 58 4.332683 TCTGTACCATCCAGACTTAGGT 57.667 45.455 0.00 0.00 34.12 3.08
58 59 5.461516 TCTGTACCATCCAGACTTAGGTA 57.538 43.478 0.00 0.00 34.12 3.08
59 60 6.027025 TCTGTACCATCCAGACTTAGGTAT 57.973 41.667 0.00 0.00 37.20 2.73
60 61 5.833667 TCTGTACCATCCAGACTTAGGTATG 59.166 44.000 0.00 0.00 37.20 2.39
61 62 5.525484 TGTACCATCCAGACTTAGGTATGT 58.475 41.667 0.00 0.00 37.20 2.29
62 63 5.597182 TGTACCATCCAGACTTAGGTATGTC 59.403 44.000 0.00 0.00 37.20 3.06
63 64 3.967987 ACCATCCAGACTTAGGTATGTCC 59.032 47.826 0.00 0.00 33.29 4.02
64 65 3.967326 CCATCCAGACTTAGGTATGTCCA 59.033 47.826 0.00 0.00 39.02 4.02
65 66 4.408921 CCATCCAGACTTAGGTATGTCCAA 59.591 45.833 0.00 0.00 39.02 3.53
66 67 5.072329 CCATCCAGACTTAGGTATGTCCAAT 59.928 44.000 0.00 0.00 39.02 3.16
67 68 6.409695 CCATCCAGACTTAGGTATGTCCAATT 60.410 42.308 0.00 0.00 39.02 2.32
68 69 6.636454 TCCAGACTTAGGTATGTCCAATTT 57.364 37.500 0.00 0.00 39.02 1.82
69 70 7.027874 TCCAGACTTAGGTATGTCCAATTTT 57.972 36.000 0.00 0.00 39.02 1.82
70 71 7.110155 TCCAGACTTAGGTATGTCCAATTTTC 58.890 38.462 0.00 0.00 39.02 2.29
71 72 6.884295 CCAGACTTAGGTATGTCCAATTTTCA 59.116 38.462 0.00 0.00 39.02 2.69
72 73 7.066284 CCAGACTTAGGTATGTCCAATTTTCAG 59.934 40.741 0.00 0.00 39.02 3.02
73 74 7.824289 CAGACTTAGGTATGTCCAATTTTCAGA 59.176 37.037 0.00 0.00 39.02 3.27
74 75 8.043710 AGACTTAGGTATGTCCAATTTTCAGAG 58.956 37.037 0.00 0.00 39.02 3.35
75 76 7.690256 ACTTAGGTATGTCCAATTTTCAGAGT 58.310 34.615 0.00 0.00 39.02 3.24
76 77 8.822805 ACTTAGGTATGTCCAATTTTCAGAGTA 58.177 33.333 0.00 0.00 39.02 2.59
77 78 9.319143 CTTAGGTATGTCCAATTTTCAGAGTAG 57.681 37.037 0.00 0.00 39.02 2.57
78 79 7.259088 AGGTATGTCCAATTTTCAGAGTAGT 57.741 36.000 0.00 0.00 39.02 2.73
79 80 7.331791 AGGTATGTCCAATTTTCAGAGTAGTC 58.668 38.462 0.00 0.00 39.02 2.59
80 81 7.181125 AGGTATGTCCAATTTTCAGAGTAGTCT 59.819 37.037 0.00 0.00 39.02 3.24
81 82 8.475639 GGTATGTCCAATTTTCAGAGTAGTCTA 58.524 37.037 0.00 0.00 35.97 2.59
82 83 9.522804 GTATGTCCAATTTTCAGAGTAGTCTAG 57.477 37.037 0.00 0.00 0.00 2.43
83 84 6.936279 TGTCCAATTTTCAGAGTAGTCTAGG 58.064 40.000 0.00 0.00 0.00 3.02
84 85 6.724441 TGTCCAATTTTCAGAGTAGTCTAGGA 59.276 38.462 0.00 0.00 0.00 2.94
85 86 7.234782 TGTCCAATTTTCAGAGTAGTCTAGGAA 59.765 37.037 0.00 0.00 0.00 3.36
86 87 7.762159 GTCCAATTTTCAGAGTAGTCTAGGAAG 59.238 40.741 0.00 0.00 0.00 3.46
87 88 7.455008 TCCAATTTTCAGAGTAGTCTAGGAAGT 59.545 37.037 0.00 0.00 0.00 3.01
88 89 8.750298 CCAATTTTCAGAGTAGTCTAGGAAGTA 58.250 37.037 0.00 0.00 0.00 2.24
89 90 9.575783 CAATTTTCAGAGTAGTCTAGGAAGTAC 57.424 37.037 0.00 0.00 0.00 2.73
90 91 8.880991 ATTTTCAGAGTAGTCTAGGAAGTACA 57.119 34.615 0.00 0.00 0.00 2.90
91 92 7.684937 TTTCAGAGTAGTCTAGGAAGTACAC 57.315 40.000 0.00 0.00 0.00 2.90
92 93 6.623979 TCAGAGTAGTCTAGGAAGTACACT 57.376 41.667 0.00 0.00 0.00 3.55
93 94 6.408035 TCAGAGTAGTCTAGGAAGTACACTG 58.592 44.000 13.32 13.32 41.38 3.66
94 95 5.065474 CAGAGTAGTCTAGGAAGTACACTGC 59.935 48.000 0.00 0.21 37.13 4.40
95 96 4.271661 AGTAGTCTAGGAAGTACACTGCC 58.728 47.826 0.00 0.00 42.37 4.85
102 103 3.955650 GGAAGTACACTGCCTAGAACA 57.044 47.619 0.00 0.00 38.73 3.18
103 104 4.267349 GGAAGTACACTGCCTAGAACAA 57.733 45.455 0.00 0.00 38.73 2.83
104 105 3.995048 GGAAGTACACTGCCTAGAACAAC 59.005 47.826 0.00 0.00 38.73 3.32
105 106 4.502604 GGAAGTACACTGCCTAGAACAACA 60.503 45.833 0.00 0.00 38.73 3.33
106 107 4.891992 AGTACACTGCCTAGAACAACAT 57.108 40.909 0.00 0.00 0.00 2.71
107 108 5.228945 AGTACACTGCCTAGAACAACATT 57.771 39.130 0.00 0.00 0.00 2.71
108 109 5.238583 AGTACACTGCCTAGAACAACATTC 58.761 41.667 0.00 0.00 0.00 2.67
109 110 4.085357 ACACTGCCTAGAACAACATTCA 57.915 40.909 0.00 0.00 0.00 2.57
110 111 4.067896 ACACTGCCTAGAACAACATTCAG 58.932 43.478 0.00 0.00 0.00 3.02
111 112 4.067896 CACTGCCTAGAACAACATTCAGT 58.932 43.478 0.00 0.00 34.29 3.41
112 113 4.067896 ACTGCCTAGAACAACATTCAGTG 58.932 43.478 0.00 0.00 32.96 3.66
113 114 2.813754 TGCCTAGAACAACATTCAGTGC 59.186 45.455 0.00 0.00 0.00 4.40
114 115 2.813754 GCCTAGAACAACATTCAGTGCA 59.186 45.455 0.00 0.00 0.00 4.57
115 116 3.365364 GCCTAGAACAACATTCAGTGCAC 60.365 47.826 9.40 9.40 0.00 4.57
116 117 4.067896 CCTAGAACAACATTCAGTGCACT 58.932 43.478 15.25 15.25 0.00 4.40
117 118 4.516698 CCTAGAACAACATTCAGTGCACTT 59.483 41.667 18.94 0.00 0.00 3.16
118 119 4.297299 AGAACAACATTCAGTGCACTTG 57.703 40.909 18.94 16.10 0.00 3.16
119 120 2.497107 ACAACATTCAGTGCACTTGC 57.503 45.000 18.94 0.00 42.50 4.01
120 121 1.268692 ACAACATTCAGTGCACTTGCG 60.269 47.619 18.94 10.65 45.83 4.85
121 122 1.024271 AACATTCAGTGCACTTGCGT 58.976 45.000 18.94 9.37 45.83 5.24
122 123 1.877637 ACATTCAGTGCACTTGCGTA 58.122 45.000 18.94 0.00 45.83 4.42
123 124 2.217750 ACATTCAGTGCACTTGCGTAA 58.782 42.857 18.94 7.19 45.83 3.18
124 125 2.813754 ACATTCAGTGCACTTGCGTAAT 59.186 40.909 18.94 9.20 45.83 1.89
125 126 4.000325 ACATTCAGTGCACTTGCGTAATA 59.000 39.130 18.94 0.00 45.83 0.98
126 127 4.142902 ACATTCAGTGCACTTGCGTAATAC 60.143 41.667 18.94 0.00 45.83 1.89
127 128 3.313012 TCAGTGCACTTGCGTAATACT 57.687 42.857 18.94 0.00 45.83 2.12
128 129 3.250744 TCAGTGCACTTGCGTAATACTC 58.749 45.455 18.94 0.00 45.83 2.59
129 130 2.348666 CAGTGCACTTGCGTAATACTCC 59.651 50.000 18.94 0.00 45.83 3.85
130 131 1.664151 GTGCACTTGCGTAATACTCCC 59.336 52.381 10.32 0.00 45.83 4.30
131 132 1.553248 TGCACTTGCGTAATACTCCCT 59.447 47.619 0.00 0.00 45.83 4.20
132 133 2.027561 TGCACTTGCGTAATACTCCCTT 60.028 45.455 0.00 0.00 45.83 3.95
133 134 2.608090 GCACTTGCGTAATACTCCCTTC 59.392 50.000 0.00 0.00 0.00 3.46
134 135 2.858344 CACTTGCGTAATACTCCCTTCG 59.142 50.000 0.00 0.00 0.00 3.79
135 136 2.494870 ACTTGCGTAATACTCCCTTCGT 59.505 45.455 0.00 0.00 0.00 3.85
136 137 3.056322 ACTTGCGTAATACTCCCTTCGTT 60.056 43.478 0.00 0.00 0.00 3.85
137 138 3.598019 TGCGTAATACTCCCTTCGTTT 57.402 42.857 0.00 0.00 0.00 3.60
138 139 3.514645 TGCGTAATACTCCCTTCGTTTC 58.485 45.455 0.00 0.00 0.00 2.78
139 140 3.194116 TGCGTAATACTCCCTTCGTTTCT 59.806 43.478 0.00 0.00 0.00 2.52
140 141 4.398988 TGCGTAATACTCCCTTCGTTTCTA 59.601 41.667 0.00 0.00 0.00 2.10
141 142 5.105797 TGCGTAATACTCCCTTCGTTTCTAA 60.106 40.000 0.00 0.00 0.00 2.10
142 143 5.807011 GCGTAATACTCCCTTCGTTTCTAAA 59.193 40.000 0.00 0.00 0.00 1.85
143 144 6.478016 GCGTAATACTCCCTTCGTTTCTAAAT 59.522 38.462 0.00 0.00 0.00 1.40
144 145 7.649306 GCGTAATACTCCCTTCGTTTCTAAATA 59.351 37.037 0.00 0.00 0.00 1.40
145 146 9.688592 CGTAATACTCCCTTCGTTTCTAAATAT 57.311 33.333 0.00 0.00 0.00 1.28
150 151 8.728337 ACTCCCTTCGTTTCTAAATATAAACC 57.272 34.615 0.00 0.00 33.05 3.27
151 152 8.546322 ACTCCCTTCGTTTCTAAATATAAACCT 58.454 33.333 0.00 0.00 33.05 3.50
152 153 9.392259 CTCCCTTCGTTTCTAAATATAAACCTT 57.608 33.333 0.00 0.00 33.05 3.50
153 154 9.743581 TCCCTTCGTTTCTAAATATAAACCTTT 57.256 29.630 0.00 0.00 33.05 3.11
172 173 8.893563 AACCTTTTTAGATATTCCAACATGGA 57.106 30.769 0.00 0.00 46.61 3.41
185 186 4.941263 TCCAACATGGACTACATACAAAGC 59.059 41.667 0.00 0.00 42.67 3.51
186 187 4.699735 CCAACATGGACTACATACAAAGCA 59.300 41.667 0.00 0.00 40.96 3.91
187 188 5.182950 CCAACATGGACTACATACAAAGCAA 59.817 40.000 0.00 0.00 40.96 3.91
188 189 6.294453 CCAACATGGACTACATACAAAGCAAA 60.294 38.462 0.00 0.00 40.96 3.68
189 190 6.892658 ACATGGACTACATACAAAGCAAAA 57.107 33.333 0.00 0.00 37.84 2.44
190 191 7.466746 ACATGGACTACATACAAAGCAAAAT 57.533 32.000 0.00 0.00 37.84 1.82
191 192 7.315142 ACATGGACTACATACAAAGCAAAATG 58.685 34.615 0.00 0.00 37.84 2.32
192 193 7.176515 ACATGGACTACATACAAAGCAAAATGA 59.823 33.333 0.00 0.00 37.84 2.57
193 194 7.517614 TGGACTACATACAAAGCAAAATGAA 57.482 32.000 0.00 0.00 0.00 2.57
194 195 8.121305 TGGACTACATACAAAGCAAAATGAAT 57.879 30.769 0.00 0.00 0.00 2.57
195 196 8.028354 TGGACTACATACAAAGCAAAATGAATG 58.972 33.333 0.00 0.00 0.00 2.67
196 197 8.243426 GGACTACATACAAAGCAAAATGAATGA 58.757 33.333 0.00 0.00 0.00 2.57
197 198 9.624697 GACTACATACAAAGCAAAATGAATGAA 57.375 29.630 0.00 0.00 0.00 2.57
205 206 9.715121 ACAAAGCAAAATGAATGAATCTACATT 57.285 25.926 0.00 0.00 42.19 2.71
240 241 9.577110 TGTCTAAATACATTTGTAAGTAGTCCG 57.423 33.333 0.00 0.00 33.76 4.79
241 242 9.578439 GTCTAAATACATTTGTAAGTAGTCCGT 57.422 33.333 0.00 0.00 33.76 4.69
248 249 8.836268 ACATTTGTAAGTAGTCCGTATTGAAA 57.164 30.769 0.00 0.00 0.00 2.69
249 250 9.444600 ACATTTGTAAGTAGTCCGTATTGAAAT 57.555 29.630 0.00 0.00 0.00 2.17
250 251 9.916397 CATTTGTAAGTAGTCCGTATTGAAATC 57.084 33.333 0.00 0.00 0.00 2.17
251 252 9.886132 ATTTGTAAGTAGTCCGTATTGAAATCT 57.114 29.630 0.00 0.00 0.00 2.40
252 253 8.922058 TTGTAAGTAGTCCGTATTGAAATCTC 57.078 34.615 0.00 0.00 0.00 2.75
253 254 8.289939 TGTAAGTAGTCCGTATTGAAATCTCT 57.710 34.615 0.00 0.00 0.00 3.10
254 255 9.399797 TGTAAGTAGTCCGTATTGAAATCTCTA 57.600 33.333 0.00 0.00 0.00 2.43
257 258 9.804758 AAGTAGTCCGTATTGAAATCTCTAAAG 57.195 33.333 0.00 0.00 0.00 1.85
258 259 8.968969 AGTAGTCCGTATTGAAATCTCTAAAGT 58.031 33.333 0.00 0.00 0.00 2.66
259 260 9.021863 GTAGTCCGTATTGAAATCTCTAAAGTG 57.978 37.037 0.00 0.00 0.00 3.16
260 261 7.042335 AGTCCGTATTGAAATCTCTAAAGTGG 58.958 38.462 0.00 0.00 0.00 4.00
261 262 5.815740 TCCGTATTGAAATCTCTAAAGTGGC 59.184 40.000 0.00 0.00 0.00 5.01
262 263 5.817816 CCGTATTGAAATCTCTAAAGTGGCT 59.182 40.000 0.00 0.00 0.00 4.75
263 264 6.316390 CCGTATTGAAATCTCTAAAGTGGCTT 59.684 38.462 0.00 0.00 0.00 4.35
264 265 7.494625 CCGTATTGAAATCTCTAAAGTGGCTTA 59.505 37.037 0.00 0.00 0.00 3.09
265 266 9.046296 CGTATTGAAATCTCTAAAGTGGCTTAT 57.954 33.333 0.00 0.00 0.00 1.73
276 277 9.832445 CTCTAAAGTGGCTTATATTTAGGAACA 57.168 33.333 0.00 0.00 36.39 3.18
277 278 9.832445 TCTAAAGTGGCTTATATTTAGGAACAG 57.168 33.333 0.00 0.00 36.39 3.16
278 279 9.832445 CTAAAGTGGCTTATATTTAGGAACAGA 57.168 33.333 0.00 0.00 33.55 3.41
279 280 8.738645 AAAGTGGCTTATATTTAGGAACAGAG 57.261 34.615 0.00 0.00 0.00 3.35
280 281 6.831976 AGTGGCTTATATTTAGGAACAGAGG 58.168 40.000 0.00 0.00 0.00 3.69
281 282 5.998363 GTGGCTTATATTTAGGAACAGAGGG 59.002 44.000 0.00 0.00 0.00 4.30
282 283 5.908831 TGGCTTATATTTAGGAACAGAGGGA 59.091 40.000 0.00 0.00 0.00 4.20
283 284 6.043243 TGGCTTATATTTAGGAACAGAGGGAG 59.957 42.308 0.00 0.00 0.00 4.30
347 348 2.635915 TGTGTTGTAGGACCCAGTTAGG 59.364 50.000 0.00 0.00 37.03 2.69
348 349 2.901839 GTGTTGTAGGACCCAGTTAGGA 59.098 50.000 0.00 0.00 41.22 2.94
349 350 3.518303 GTGTTGTAGGACCCAGTTAGGAT 59.482 47.826 0.00 0.00 41.22 3.24
350 351 4.713321 GTGTTGTAGGACCCAGTTAGGATA 59.287 45.833 0.00 0.00 41.22 2.59
351 352 5.365895 GTGTTGTAGGACCCAGTTAGGATAT 59.634 44.000 0.00 0.00 41.22 1.63
352 353 5.601313 TGTTGTAGGACCCAGTTAGGATATC 59.399 44.000 0.00 0.00 41.22 1.63
353 354 5.412617 TGTAGGACCCAGTTAGGATATCA 57.587 43.478 4.83 0.00 41.22 2.15
354 355 5.977533 TGTAGGACCCAGTTAGGATATCAT 58.022 41.667 4.83 0.00 41.22 2.45
355 356 5.780282 TGTAGGACCCAGTTAGGATATCATG 59.220 44.000 4.83 0.00 41.22 3.07
356 357 4.832492 AGGACCCAGTTAGGATATCATGT 58.168 43.478 4.83 0.00 41.22 3.21
357 358 5.227593 AGGACCCAGTTAGGATATCATGTT 58.772 41.667 4.83 0.00 41.22 2.71
358 359 5.672194 AGGACCCAGTTAGGATATCATGTTT 59.328 40.000 4.83 0.00 41.22 2.83
359 360 5.765182 GGACCCAGTTAGGATATCATGTTTG 59.235 44.000 4.83 0.00 41.22 2.93
360 361 6.327386 ACCCAGTTAGGATATCATGTTTGT 57.673 37.500 4.83 0.00 41.22 2.83
361 362 6.122277 ACCCAGTTAGGATATCATGTTTGTG 58.878 40.000 4.83 0.00 41.22 3.33
362 363 5.532406 CCCAGTTAGGATATCATGTTTGTGG 59.468 44.000 4.83 2.67 41.22 4.17
363 364 5.532406 CCAGTTAGGATATCATGTTTGTGGG 59.468 44.000 4.83 0.00 41.22 4.61
364 365 5.532406 CAGTTAGGATATCATGTTTGTGGGG 59.468 44.000 4.83 0.00 0.00 4.96
365 366 2.949447 AGGATATCATGTTTGTGGGGC 58.051 47.619 4.83 0.00 0.00 5.80
366 367 2.244510 AGGATATCATGTTTGTGGGGCA 59.755 45.455 4.83 0.00 0.00 5.36
367 368 3.030291 GGATATCATGTTTGTGGGGCAA 58.970 45.455 4.83 0.00 34.87 4.52
368 369 3.642848 GGATATCATGTTTGTGGGGCAAT 59.357 43.478 4.83 0.00 36.89 3.56
369 370 4.262164 GGATATCATGTTTGTGGGGCAATC 60.262 45.833 4.83 0.00 36.89 2.67
370 371 2.307496 TCATGTTTGTGGGGCAATCT 57.693 45.000 0.00 0.00 36.89 2.40
371 372 1.894466 TCATGTTTGTGGGGCAATCTG 59.106 47.619 0.00 0.00 36.89 2.90
372 373 1.619827 CATGTTTGTGGGGCAATCTGT 59.380 47.619 0.00 0.00 36.89 3.41
373 374 1.786937 TGTTTGTGGGGCAATCTGTT 58.213 45.000 0.00 0.00 36.89 3.16
374 375 1.411977 TGTTTGTGGGGCAATCTGTTG 59.588 47.619 0.00 0.00 36.89 3.33
394 395 2.324860 GCGGTTGCAATGTTTAGTTCC 58.675 47.619 0.59 0.00 42.15 3.62
395 396 2.030274 GCGGTTGCAATGTTTAGTTCCT 60.030 45.455 0.59 0.00 42.15 3.36
396 397 3.189702 GCGGTTGCAATGTTTAGTTCCTA 59.810 43.478 0.59 0.00 42.15 2.94
397 398 4.320641 GCGGTTGCAATGTTTAGTTCCTAA 60.321 41.667 0.59 0.00 42.15 2.69
398 399 5.390613 CGGTTGCAATGTTTAGTTCCTAAG 58.609 41.667 0.59 0.00 0.00 2.18
399 400 5.048991 CGGTTGCAATGTTTAGTTCCTAAGT 60.049 40.000 0.59 0.00 0.00 2.24
400 401 6.514376 CGGTTGCAATGTTTAGTTCCTAAGTT 60.514 38.462 0.59 0.00 0.00 2.66
401 402 7.308109 CGGTTGCAATGTTTAGTTCCTAAGTTA 60.308 37.037 0.59 0.00 0.00 2.24
402 403 8.354426 GGTTGCAATGTTTAGTTCCTAAGTTAA 58.646 33.333 0.59 0.00 0.00 2.01
403 404 9.177304 GTTGCAATGTTTAGTTCCTAAGTTAAC 57.823 33.333 0.59 0.00 0.00 2.01
404 405 8.685838 TGCAATGTTTAGTTCCTAAGTTAACT 57.314 30.769 1.12 1.12 39.25 2.24
405 406 9.781633 TGCAATGTTTAGTTCCTAAGTTAACTA 57.218 29.630 8.92 0.00 37.19 2.24
418 419 9.653287 TCCTAAGTTAACTATGATTGTGTTCTG 57.347 33.333 8.92 0.00 0.00 3.02
419 420 8.391106 CCTAAGTTAACTATGATTGTGTTCTGC 58.609 37.037 8.92 0.00 0.00 4.26
420 421 7.986085 AAGTTAACTATGATTGTGTTCTGCT 57.014 32.000 8.92 0.00 0.00 4.24
421 422 7.986085 AGTTAACTATGATTGTGTTCTGCTT 57.014 32.000 6.26 0.00 0.00 3.91
422 423 9.502091 AAGTTAACTATGATTGTGTTCTGCTTA 57.498 29.630 8.92 0.00 0.00 3.09
423 424 9.672673 AGTTAACTATGATTGTGTTCTGCTTAT 57.327 29.630 6.26 0.00 0.00 1.73
453 454 9.729023 TTAATGAAGTTTACACATGTTCAGTTG 57.271 29.630 0.00 0.00 30.99 3.16
454 455 6.130298 TGAAGTTTACACATGTTCAGTTGG 57.870 37.500 0.00 0.00 0.00 3.77
455 456 4.568152 AGTTTACACATGTTCAGTTGGC 57.432 40.909 0.00 0.00 0.00 4.52
456 457 3.951037 AGTTTACACATGTTCAGTTGGCA 59.049 39.130 0.00 0.00 0.00 4.92
457 458 4.584325 AGTTTACACATGTTCAGTTGGCAT 59.416 37.500 0.00 0.00 0.00 4.40
458 459 5.068987 AGTTTACACATGTTCAGTTGGCATT 59.931 36.000 0.00 0.00 0.00 3.56
459 460 3.648339 ACACATGTTCAGTTGGCATTC 57.352 42.857 0.00 0.00 0.00 2.67
460 461 2.957680 ACACATGTTCAGTTGGCATTCA 59.042 40.909 0.00 0.00 0.00 2.57
461 462 3.575256 ACACATGTTCAGTTGGCATTCAT 59.425 39.130 0.00 0.00 0.00 2.57
462 463 3.924073 CACATGTTCAGTTGGCATTCATG 59.076 43.478 0.00 0.00 37.68 3.07
481 482 9.362539 CATTCATGCTTTATTTCTTTTAGCAGT 57.637 29.630 0.00 0.00 44.15 4.40
482 483 9.933723 ATTCATGCTTTATTTCTTTTAGCAGTT 57.066 25.926 0.00 0.00 44.15 3.16
483 484 9.762933 TTCATGCTTTATTTCTTTTAGCAGTTT 57.237 25.926 0.00 0.00 44.15 2.66
487 488 9.677567 TGCTTTATTTCTTTTAGCAGTTTACTG 57.322 29.630 5.52 5.52 46.40 2.74
488 489 9.893305 GCTTTATTTCTTTTAGCAGTTTACTGA 57.107 29.630 13.83 0.00 46.59 3.41
497 498 9.897744 CTTTTAGCAGTTTACTGATCATTTTCA 57.102 29.630 13.83 0.00 46.59 2.69
498 499 9.897744 TTTTAGCAGTTTACTGATCATTTTCAG 57.102 29.630 13.83 0.09 46.59 3.02
499 500 8.846943 TTAGCAGTTTACTGATCATTTTCAGA 57.153 30.769 13.83 0.00 46.59 3.27
500 501 7.138692 AGCAGTTTACTGATCATTTTCAGAC 57.861 36.000 13.83 0.00 46.59 3.51
501 502 6.712095 AGCAGTTTACTGATCATTTTCAGACA 59.288 34.615 13.83 0.00 46.59 3.41
502 503 7.229306 AGCAGTTTACTGATCATTTTCAGACAA 59.771 33.333 13.83 0.16 46.59 3.18
503 504 8.025445 GCAGTTTACTGATCATTTTCAGACAAT 58.975 33.333 13.83 0.00 46.59 2.71
532 533 9.846248 ATATAAAAACTCTGCAACTCATGTTTC 57.154 29.630 0.00 0.00 33.36 2.78
533 534 4.574599 AAACTCTGCAACTCATGTTTCC 57.425 40.909 0.00 0.00 33.52 3.13
534 535 3.498774 ACTCTGCAACTCATGTTTCCT 57.501 42.857 0.00 0.00 33.52 3.36
535 536 3.825328 ACTCTGCAACTCATGTTTCCTT 58.175 40.909 0.00 0.00 33.52 3.36
536 537 3.817647 ACTCTGCAACTCATGTTTCCTTC 59.182 43.478 0.00 0.00 33.52 3.46
537 538 4.070716 CTCTGCAACTCATGTTTCCTTCT 58.929 43.478 0.00 0.00 33.52 2.85
538 539 3.817084 TCTGCAACTCATGTTTCCTTCTG 59.183 43.478 0.00 0.00 33.52 3.02
539 540 3.817084 CTGCAACTCATGTTTCCTTCTGA 59.183 43.478 0.00 0.00 33.52 3.27
540 541 4.206375 TGCAACTCATGTTTCCTTCTGAA 58.794 39.130 0.00 0.00 33.52 3.02
541 542 4.644234 TGCAACTCATGTTTCCTTCTGAAA 59.356 37.500 0.00 0.00 40.64 2.69
563 564 9.770097 TGAAACATTATTTTGGATAAAGCAACA 57.230 25.926 0.00 0.00 0.00 3.33
566 567 9.995003 AACATTATTTTGGATAAAGCAACAAGA 57.005 25.926 0.00 0.00 0.00 3.02
567 568 9.643693 ACATTATTTTGGATAAAGCAACAAGAG 57.356 29.630 0.00 0.00 0.00 2.85
568 569 9.643693 CATTATTTTGGATAAAGCAACAAGAGT 57.356 29.630 0.00 0.00 0.00 3.24
569 570 9.643693 ATTATTTTGGATAAAGCAACAAGAGTG 57.356 29.630 0.00 0.00 0.00 3.51
570 571 6.463995 TTTTGGATAAAGCAACAAGAGTGT 57.536 33.333 0.00 0.00 40.75 3.55
571 572 5.437289 TTGGATAAAGCAACAAGAGTGTG 57.563 39.130 0.00 0.00 38.27 3.82
572 573 4.460263 TGGATAAAGCAACAAGAGTGTGT 58.540 39.130 0.00 0.00 38.27 3.72
573 574 4.887071 TGGATAAAGCAACAAGAGTGTGTT 59.113 37.500 0.00 0.00 42.48 3.32
574 575 6.058833 TGGATAAAGCAACAAGAGTGTGTTA 58.941 36.000 0.00 0.00 39.73 2.41
575 576 6.017440 TGGATAAAGCAACAAGAGTGTGTTAC 60.017 38.462 0.00 0.00 39.73 2.50
576 577 6.204882 GGATAAAGCAACAAGAGTGTGTTACT 59.795 38.462 0.00 0.00 39.73 2.24
577 578 4.882671 AAGCAACAAGAGTGTGTTACTG 57.117 40.909 0.00 0.00 39.73 2.74
578 579 2.614057 AGCAACAAGAGTGTGTTACTGC 59.386 45.455 0.00 0.00 39.73 4.40
579 580 2.287009 GCAACAAGAGTGTGTTACTGCC 60.287 50.000 0.00 0.00 39.73 4.85
580 581 3.206150 CAACAAGAGTGTGTTACTGCCT 58.794 45.455 0.00 0.00 39.73 4.75
581 582 2.838736 ACAAGAGTGTGTTACTGCCTG 58.161 47.619 0.00 0.00 40.53 4.85
582 583 2.170607 ACAAGAGTGTGTTACTGCCTGT 59.829 45.455 0.00 0.00 40.53 4.00
583 584 3.386726 ACAAGAGTGTGTTACTGCCTGTA 59.613 43.478 0.00 0.00 40.53 2.74
584 585 4.040461 ACAAGAGTGTGTTACTGCCTGTAT 59.960 41.667 0.00 0.00 40.53 2.29
585 586 4.193826 AGAGTGTGTTACTGCCTGTATG 57.806 45.455 0.00 0.00 40.53 2.39
586 587 3.578716 AGAGTGTGTTACTGCCTGTATGT 59.421 43.478 0.00 0.00 40.53 2.29
587 588 4.040461 AGAGTGTGTTACTGCCTGTATGTT 59.960 41.667 0.00 0.00 40.53 2.71
588 589 4.714632 AGTGTGTTACTGCCTGTATGTTT 58.285 39.130 0.00 0.00 38.49 2.83
589 590 5.860611 AGTGTGTTACTGCCTGTATGTTTA 58.139 37.500 0.00 0.00 38.49 2.01
590 591 6.472887 AGTGTGTTACTGCCTGTATGTTTAT 58.527 36.000 0.00 0.00 38.49 1.40
591 592 6.940298 AGTGTGTTACTGCCTGTATGTTTATT 59.060 34.615 0.00 0.00 38.49 1.40
592 593 7.021196 GTGTGTTACTGCCTGTATGTTTATTG 58.979 38.462 0.00 0.00 0.00 1.90
593 594 6.150307 TGTGTTACTGCCTGTATGTTTATTGG 59.850 38.462 0.00 0.00 0.00 3.16
594 595 5.124776 TGTTACTGCCTGTATGTTTATTGGC 59.875 40.000 0.00 0.00 40.62 4.52
595 596 3.968265 ACTGCCTGTATGTTTATTGGCT 58.032 40.909 0.00 0.00 40.82 4.75
596 597 3.696051 ACTGCCTGTATGTTTATTGGCTG 59.304 43.478 0.00 0.00 42.51 4.85
597 598 3.696045 TGCCTGTATGTTTATTGGCTGT 58.304 40.909 0.00 0.00 40.82 4.40
598 599 4.849518 TGCCTGTATGTTTATTGGCTGTA 58.150 39.130 0.00 0.00 40.82 2.74
599 600 4.638421 TGCCTGTATGTTTATTGGCTGTAC 59.362 41.667 0.00 0.00 40.82 2.90
600 601 4.881850 GCCTGTATGTTTATTGGCTGTACT 59.118 41.667 0.00 0.00 37.58 2.73
601 602 5.357032 GCCTGTATGTTTATTGGCTGTACTT 59.643 40.000 0.00 0.00 37.58 2.24
602 603 6.127730 GCCTGTATGTTTATTGGCTGTACTTT 60.128 38.462 0.00 0.00 37.58 2.66
603 604 7.576856 GCCTGTATGTTTATTGGCTGTACTTTT 60.577 37.037 0.00 0.00 37.58 2.27
604 605 7.754924 CCTGTATGTTTATTGGCTGTACTTTTG 59.245 37.037 0.00 0.00 0.00 2.44
605 606 8.397575 TGTATGTTTATTGGCTGTACTTTTGA 57.602 30.769 0.00 0.00 0.00 2.69
606 607 9.019656 TGTATGTTTATTGGCTGTACTTTTGAT 57.980 29.630 0.00 0.00 0.00 2.57
607 608 9.503427 GTATGTTTATTGGCTGTACTTTTGATC 57.497 33.333 0.00 0.00 0.00 2.92
608 609 7.759489 TGTTTATTGGCTGTACTTTTGATCT 57.241 32.000 0.00 0.00 0.00 2.75
609 610 7.592938 TGTTTATTGGCTGTACTTTTGATCTG 58.407 34.615 0.00 0.00 0.00 2.90
610 611 4.708726 ATTGGCTGTACTTTTGATCTGC 57.291 40.909 0.00 0.00 0.00 4.26
611 612 3.423539 TGGCTGTACTTTTGATCTGCT 57.576 42.857 0.00 0.00 0.00 4.24
612 613 3.754965 TGGCTGTACTTTTGATCTGCTT 58.245 40.909 0.00 0.00 0.00 3.91
613 614 4.144297 TGGCTGTACTTTTGATCTGCTTT 58.856 39.130 0.00 0.00 0.00 3.51
614 615 4.584325 TGGCTGTACTTTTGATCTGCTTTT 59.416 37.500 0.00 0.00 0.00 2.27
615 616 4.919754 GGCTGTACTTTTGATCTGCTTTTG 59.080 41.667 0.00 0.00 0.00 2.44
616 617 5.507985 GGCTGTACTTTTGATCTGCTTTTGT 60.508 40.000 0.00 0.00 0.00 2.83
617 618 5.979517 GCTGTACTTTTGATCTGCTTTTGTT 59.020 36.000 0.00 0.00 0.00 2.83
618 619 7.138736 GCTGTACTTTTGATCTGCTTTTGTTA 58.861 34.615 0.00 0.00 0.00 2.41
619 620 7.113544 GCTGTACTTTTGATCTGCTTTTGTTAC 59.886 37.037 0.00 0.00 0.00 2.50
620 621 7.990917 TGTACTTTTGATCTGCTTTTGTTACA 58.009 30.769 0.00 0.00 0.00 2.41
621 622 8.462811 TGTACTTTTGATCTGCTTTTGTTACAA 58.537 29.630 0.00 0.00 0.00 2.41
622 623 7.992180 ACTTTTGATCTGCTTTTGTTACAAG 57.008 32.000 0.00 0.00 0.00 3.16
623 624 7.771183 ACTTTTGATCTGCTTTTGTTACAAGA 58.229 30.769 0.00 0.00 0.00 3.02
624 625 7.702348 ACTTTTGATCTGCTTTTGTTACAAGAC 59.298 33.333 0.00 0.00 0.00 3.01
625 626 6.691754 TTGATCTGCTTTTGTTACAAGACA 57.308 33.333 0.00 0.00 0.00 3.41
626 627 6.882610 TGATCTGCTTTTGTTACAAGACAT 57.117 33.333 0.00 0.00 0.00 3.06
627 628 7.275888 TGATCTGCTTTTGTTACAAGACATT 57.724 32.000 0.00 0.00 0.00 2.71
628 629 7.715657 TGATCTGCTTTTGTTACAAGACATTT 58.284 30.769 0.00 0.00 0.00 2.32
629 630 7.862372 TGATCTGCTTTTGTTACAAGACATTTC 59.138 33.333 0.00 0.49 0.00 2.17
630 631 7.094508 TCTGCTTTTGTTACAAGACATTTCA 57.905 32.000 0.00 0.00 0.00 2.69
631 632 7.715657 TCTGCTTTTGTTACAAGACATTTCAT 58.284 30.769 0.00 0.00 0.00 2.57
632 633 7.862372 TCTGCTTTTGTTACAAGACATTTCATC 59.138 33.333 0.00 0.00 0.00 2.92
633 634 7.487484 TGCTTTTGTTACAAGACATTTCATCA 58.513 30.769 0.00 0.00 0.00 3.07
634 635 7.978414 TGCTTTTGTTACAAGACATTTCATCAA 59.022 29.630 0.00 0.00 0.00 2.57
635 636 8.981647 GCTTTTGTTACAAGACATTTCATCAAT 58.018 29.630 0.00 0.00 0.00 2.57
640 641 9.681692 TGTTACAAGACATTTCATCAATTCTTG 57.318 29.630 7.44 7.44 40.85 3.02
641 642 9.683069 GTTACAAGACATTTCATCAATTCTTGT 57.317 29.630 16.51 16.51 44.59 3.16
642 643 9.681692 TTACAAGACATTTCATCAATTCTTGTG 57.318 29.630 19.92 0.00 43.66 3.33
643 644 7.719483 ACAAGACATTTCATCAATTCTTGTGT 58.281 30.769 12.68 0.00 43.10 3.72
644 645 8.849168 ACAAGACATTTCATCAATTCTTGTGTA 58.151 29.630 12.68 0.00 43.10 2.90
645 646 9.338291 CAAGACATTTCATCAATTCTTGTGTAG 57.662 33.333 0.00 0.00 36.49 2.74
646 647 8.853077 AGACATTTCATCAATTCTTGTGTAGA 57.147 30.769 0.00 0.00 0.00 2.59
647 648 8.725148 AGACATTTCATCAATTCTTGTGTAGAC 58.275 33.333 0.00 0.00 30.90 2.59
648 649 8.394971 ACATTTCATCAATTCTTGTGTAGACA 57.605 30.769 0.00 0.00 30.90 3.41
649 650 9.017509 ACATTTCATCAATTCTTGTGTAGACAT 57.982 29.630 0.00 0.00 30.90 3.06
650 651 9.285770 CATTTCATCAATTCTTGTGTAGACATG 57.714 33.333 0.00 0.00 30.90 3.21
651 652 6.426980 TCATCAATTCTTGTGTAGACATGC 57.573 37.500 0.00 0.00 30.90 4.06
652 653 6.175471 TCATCAATTCTTGTGTAGACATGCT 58.825 36.000 0.00 0.00 30.90 3.79
653 654 6.656270 TCATCAATTCTTGTGTAGACATGCTT 59.344 34.615 0.00 0.00 30.90 3.91
654 655 6.882610 TCAATTCTTGTGTAGACATGCTTT 57.117 33.333 0.00 0.00 30.90 3.51
655 656 7.275888 TCAATTCTTGTGTAGACATGCTTTT 57.724 32.000 0.00 0.00 30.90 2.27
656 657 8.389779 TCAATTCTTGTGTAGACATGCTTTTA 57.610 30.769 0.00 0.00 30.90 1.52
657 658 9.013229 TCAATTCTTGTGTAGACATGCTTTTAT 57.987 29.630 0.00 0.00 30.90 1.40
658 659 9.630098 CAATTCTTGTGTAGACATGCTTTTATT 57.370 29.630 0.00 0.00 30.90 1.40
659 660 9.630098 AATTCTTGTGTAGACATGCTTTTATTG 57.370 29.630 0.00 0.00 30.90 1.90
660 661 7.144722 TCTTGTGTAGACATGCTTTTATTGG 57.855 36.000 0.00 0.00 30.13 3.16
661 662 6.714810 TCTTGTGTAGACATGCTTTTATTGGT 59.285 34.615 0.00 0.00 30.13 3.67
662 663 6.892658 TGTGTAGACATGCTTTTATTGGTT 57.107 33.333 0.00 0.00 0.00 3.67
663 664 7.283625 TGTGTAGACATGCTTTTATTGGTTT 57.716 32.000 0.00 0.00 0.00 3.27
664 665 7.144661 TGTGTAGACATGCTTTTATTGGTTTG 58.855 34.615 0.00 0.00 0.00 2.93
665 666 6.089417 GTGTAGACATGCTTTTATTGGTTTGC 59.911 38.462 0.00 0.00 0.00 3.68
666 667 5.473066 AGACATGCTTTTATTGGTTTGCT 57.527 34.783 0.00 0.00 0.00 3.91
667 668 5.857268 AGACATGCTTTTATTGGTTTGCTT 58.143 33.333 0.00 0.00 0.00 3.91
668 669 5.928264 AGACATGCTTTTATTGGTTTGCTTC 59.072 36.000 0.00 0.00 0.00 3.86
669 670 5.857268 ACATGCTTTTATTGGTTTGCTTCT 58.143 33.333 0.00 0.00 0.00 2.85
670 671 6.991938 ACATGCTTTTATTGGTTTGCTTCTA 58.008 32.000 0.00 0.00 0.00 2.10
671 672 7.441017 ACATGCTTTTATTGGTTTGCTTCTAA 58.559 30.769 0.00 0.00 0.00 2.10
672 673 7.930865 ACATGCTTTTATTGGTTTGCTTCTAAA 59.069 29.630 0.00 0.00 0.00 1.85
673 674 8.938906 CATGCTTTTATTGGTTTGCTTCTAAAT 58.061 29.630 0.00 0.00 0.00 1.40
674 675 8.309163 TGCTTTTATTGGTTTGCTTCTAAATG 57.691 30.769 0.00 0.00 0.00 2.32
675 676 7.095271 TGCTTTTATTGGTTTGCTTCTAAATGC 60.095 33.333 0.00 0.00 33.44 3.56
676 677 7.095271 GCTTTTATTGGTTTGCTTCTAAATGCA 60.095 33.333 0.00 0.00 37.42 3.96
677 678 8.845413 TTTTATTGGTTTGCTTCTAAATGCAT 57.155 26.923 0.00 0.00 39.07 3.96
678 679 8.477984 TTTATTGGTTTGCTTCTAAATGCATC 57.522 30.769 0.00 0.00 39.07 3.91
679 680 5.726980 TTGGTTTGCTTCTAAATGCATCT 57.273 34.783 0.00 0.00 39.07 2.90
680 681 5.726980 TGGTTTGCTTCTAAATGCATCTT 57.273 34.783 0.00 0.00 39.07 2.40
681 682 6.100404 TGGTTTGCTTCTAAATGCATCTTT 57.900 33.333 0.00 0.00 39.07 2.52
682 683 7.225784 TGGTTTGCTTCTAAATGCATCTTTA 57.774 32.000 0.00 0.00 39.07 1.85
683 684 7.839907 TGGTTTGCTTCTAAATGCATCTTTAT 58.160 30.769 0.00 0.00 39.07 1.40
684 685 7.975616 TGGTTTGCTTCTAAATGCATCTTTATC 59.024 33.333 0.00 0.00 39.07 1.75
685 686 8.193438 GGTTTGCTTCTAAATGCATCTTTATCT 58.807 33.333 0.00 0.00 39.07 1.98
686 687 9.017669 GTTTGCTTCTAAATGCATCTTTATCTG 57.982 33.333 0.00 0.00 39.07 2.90
687 688 6.732154 TGCTTCTAAATGCATCTTTATCTGC 58.268 36.000 0.00 2.56 38.87 4.26
696 697 4.877823 TGCATCTTTATCTGCACTTGTAGG 59.122 41.667 0.00 0.00 43.11 3.18
697 698 4.260948 GCATCTTTATCTGCACTTGTAGGC 60.261 45.833 0.00 0.00 38.28 3.93
698 699 4.826274 TCTTTATCTGCACTTGTAGGCT 57.174 40.909 0.00 0.00 0.00 4.58
699 700 4.759782 TCTTTATCTGCACTTGTAGGCTC 58.240 43.478 0.00 0.00 0.00 4.70
700 701 4.467795 TCTTTATCTGCACTTGTAGGCTCT 59.532 41.667 0.00 0.00 0.00 4.09
701 702 2.687700 ATCTGCACTTGTAGGCTCTG 57.312 50.000 0.00 0.00 0.00 3.35
702 703 0.036952 TCTGCACTTGTAGGCTCTGC 60.037 55.000 0.00 0.00 0.00 4.26
703 704 1.357258 CTGCACTTGTAGGCTCTGCG 61.357 60.000 0.00 0.00 0.00 5.18
704 705 2.103042 GCACTTGTAGGCTCTGCGG 61.103 63.158 0.00 0.00 0.00 5.69
705 706 1.448540 CACTTGTAGGCTCTGCGGG 60.449 63.158 0.00 0.00 0.00 6.13
706 707 1.609501 ACTTGTAGGCTCTGCGGGA 60.610 57.895 0.00 0.00 0.00 5.14
707 708 0.978146 ACTTGTAGGCTCTGCGGGAT 60.978 55.000 0.00 0.00 0.00 3.85
708 709 0.179000 CTTGTAGGCTCTGCGGGATT 59.821 55.000 0.00 0.00 0.00 3.01
709 710 0.618458 TTGTAGGCTCTGCGGGATTT 59.382 50.000 0.00 0.00 0.00 2.17
710 711 0.107703 TGTAGGCTCTGCGGGATTTG 60.108 55.000 0.00 0.00 0.00 2.32
711 712 0.178068 GTAGGCTCTGCGGGATTTGA 59.822 55.000 0.00 0.00 0.00 2.69
712 713 1.131638 TAGGCTCTGCGGGATTTGAT 58.868 50.000 0.00 0.00 0.00 2.57
713 714 0.465097 AGGCTCTGCGGGATTTGATG 60.465 55.000 0.00 0.00 0.00 3.07
714 715 0.464373 GGCTCTGCGGGATTTGATGA 60.464 55.000 0.00 0.00 0.00 2.92
715 716 1.602311 GCTCTGCGGGATTTGATGAT 58.398 50.000 0.00 0.00 0.00 2.45
716 717 1.266175 GCTCTGCGGGATTTGATGATG 59.734 52.381 0.00 0.00 0.00 3.07
717 718 2.569059 CTCTGCGGGATTTGATGATGT 58.431 47.619 0.00 0.00 0.00 3.06
718 719 3.732212 CTCTGCGGGATTTGATGATGTA 58.268 45.455 0.00 0.00 0.00 2.29
719 720 4.321718 CTCTGCGGGATTTGATGATGTAT 58.678 43.478 0.00 0.00 0.00 2.29
720 721 4.067192 TCTGCGGGATTTGATGATGTATG 58.933 43.478 0.00 0.00 0.00 2.39
721 722 2.553602 TGCGGGATTTGATGATGTATGC 59.446 45.455 0.00 0.00 0.00 3.14
722 723 2.413239 GCGGGATTTGATGATGTATGCG 60.413 50.000 0.00 0.00 0.00 4.73
723 724 3.066380 CGGGATTTGATGATGTATGCGA 58.934 45.455 0.00 0.00 0.00 5.10
724 725 3.498018 CGGGATTTGATGATGTATGCGAA 59.502 43.478 0.00 0.00 0.00 4.70
725 726 4.154737 CGGGATTTGATGATGTATGCGAAT 59.845 41.667 0.00 0.00 0.00 3.34
726 727 5.396484 GGGATTTGATGATGTATGCGAATG 58.604 41.667 0.00 0.00 0.00 2.67
727 728 5.048504 GGGATTTGATGATGTATGCGAATGT 60.049 40.000 0.00 0.00 0.00 2.71
728 729 6.082338 GGATTTGATGATGTATGCGAATGTC 58.918 40.000 0.00 0.00 0.00 3.06
729 730 6.072838 GGATTTGATGATGTATGCGAATGTCT 60.073 38.462 0.00 0.00 0.00 3.41
730 731 5.662211 TTGATGATGTATGCGAATGTCTG 57.338 39.130 0.00 0.00 0.00 3.51
731 732 4.947645 TGATGATGTATGCGAATGTCTGA 58.052 39.130 0.00 0.00 0.00 3.27
732 733 5.358922 TGATGATGTATGCGAATGTCTGAA 58.641 37.500 0.00 0.00 0.00 3.02
733 734 5.993441 TGATGATGTATGCGAATGTCTGAAT 59.007 36.000 0.00 0.00 0.00 2.57
734 735 7.153985 TGATGATGTATGCGAATGTCTGAATA 58.846 34.615 0.00 0.00 0.00 1.75
735 736 7.656948 TGATGATGTATGCGAATGTCTGAATAA 59.343 33.333 0.00 0.00 0.00 1.40
736 737 7.412137 TGATGTATGCGAATGTCTGAATAAG 57.588 36.000 0.00 0.00 0.00 1.73
737 738 6.986231 TGATGTATGCGAATGTCTGAATAAGT 59.014 34.615 0.00 0.00 0.00 2.24
738 739 6.828502 TGTATGCGAATGTCTGAATAAGTC 57.171 37.500 0.00 0.00 0.00 3.01
739 740 5.753438 TGTATGCGAATGTCTGAATAAGTCC 59.247 40.000 0.00 0.00 0.00 3.85
740 741 4.471904 TGCGAATGTCTGAATAAGTCCT 57.528 40.909 0.00 0.00 0.00 3.85
741 742 4.183865 TGCGAATGTCTGAATAAGTCCTG 58.816 43.478 0.00 0.00 0.00 3.86
742 743 4.081697 TGCGAATGTCTGAATAAGTCCTGA 60.082 41.667 0.00 0.00 0.00 3.86
743 744 4.870426 GCGAATGTCTGAATAAGTCCTGAA 59.130 41.667 0.00 0.00 0.00 3.02
744 745 5.525378 GCGAATGTCTGAATAAGTCCTGAAT 59.475 40.000 0.00 0.00 0.00 2.57
745 746 6.037610 GCGAATGTCTGAATAAGTCCTGAATT 59.962 38.462 0.00 0.00 0.00 2.17
746 747 7.414540 GCGAATGTCTGAATAAGTCCTGAATTT 60.415 37.037 0.00 0.00 0.00 1.82
747 748 8.119226 CGAATGTCTGAATAAGTCCTGAATTTC 58.881 37.037 0.00 0.00 0.00 2.17
748 749 9.171877 GAATGTCTGAATAAGTCCTGAATTTCT 57.828 33.333 0.00 0.00 0.00 2.52
749 750 9.525826 AATGTCTGAATAAGTCCTGAATTTCTT 57.474 29.630 0.00 0.00 0.00 2.52
750 751 8.553459 TGTCTGAATAAGTCCTGAATTTCTTC 57.447 34.615 0.00 0.00 0.00 2.87
751 752 7.607991 TGTCTGAATAAGTCCTGAATTTCTTCC 59.392 37.037 0.00 0.00 0.00 3.46
752 753 7.607991 GTCTGAATAAGTCCTGAATTTCTTCCA 59.392 37.037 0.00 0.00 0.00 3.53
753 754 8.163408 TCTGAATAAGTCCTGAATTTCTTCCAA 58.837 33.333 0.00 0.00 0.00 3.53
754 755 8.110860 TGAATAAGTCCTGAATTTCTTCCAAC 57.889 34.615 0.00 0.00 0.00 3.77
755 756 7.723616 TGAATAAGTCCTGAATTTCTTCCAACA 59.276 33.333 0.00 0.00 0.00 3.33
756 757 8.477419 AATAAGTCCTGAATTTCTTCCAACAA 57.523 30.769 0.00 0.00 0.00 2.83
757 758 6.790232 AAGTCCTGAATTTCTTCCAACAAA 57.210 33.333 0.00 0.00 0.00 2.83
758 759 6.983906 AGTCCTGAATTTCTTCCAACAAAT 57.016 33.333 0.00 0.00 0.00 2.32
759 760 8.477419 AAGTCCTGAATTTCTTCCAACAAATA 57.523 30.769 0.00 0.00 0.00 1.40
760 761 8.115490 AGTCCTGAATTTCTTCCAACAAATAG 57.885 34.615 0.00 0.00 0.00 1.73
761 762 7.944554 AGTCCTGAATTTCTTCCAACAAATAGA 59.055 33.333 0.00 0.00 0.00 1.98
762 763 8.023706 GTCCTGAATTTCTTCCAACAAATAGAC 58.976 37.037 0.00 0.00 0.00 2.59
763 764 7.723616 TCCTGAATTTCTTCCAACAAATAGACA 59.276 33.333 0.00 0.00 0.00 3.41
764 765 7.809806 CCTGAATTTCTTCCAACAAATAGACAC 59.190 37.037 0.00 0.00 0.00 3.67
765 766 8.231692 TGAATTTCTTCCAACAAATAGACACA 57.768 30.769 0.00 0.00 0.00 3.72
766 767 8.134895 TGAATTTCTTCCAACAAATAGACACAC 58.865 33.333 0.00 0.00 0.00 3.82
767 768 7.823745 ATTTCTTCCAACAAATAGACACACT 57.176 32.000 0.00 0.00 0.00 3.55
768 769 8.918202 ATTTCTTCCAACAAATAGACACACTA 57.082 30.769 0.00 0.00 35.42 2.74
769 770 8.740123 TTTCTTCCAACAAATAGACACACTAA 57.260 30.769 0.00 0.00 34.56 2.24
770 771 8.918202 TTCTTCCAACAAATAGACACACTAAT 57.082 30.769 0.00 0.00 34.56 1.73
771 772 8.918202 TCTTCCAACAAATAGACACACTAATT 57.082 30.769 0.00 0.00 34.56 1.40
812 813 2.166130 TTGAGTTCCTGATGCCGCGA 62.166 55.000 8.23 0.00 0.00 5.87
835 836 1.602377 GGTGTGCAAACGAGCTAGTTT 59.398 47.619 17.96 17.96 44.27 2.66
911 912 2.996631 AGCCACACATCATCTTCTTCC 58.003 47.619 0.00 0.00 0.00 3.46
944 947 3.407540 TCCCTCATCTATCTCCCATCCTT 59.592 47.826 0.00 0.00 0.00 3.36
995 1021 3.173965 CTTCTCCTTCTTCACACCCCTA 58.826 50.000 0.00 0.00 0.00 3.53
1071 1097 1.540267 CTCTATACTGCCGGCGTGTAT 59.460 52.381 32.62 32.62 0.00 2.29
1238 1280 1.078497 TGGTTGCTATCTGTGCCCG 60.078 57.895 0.00 0.00 0.00 6.13
1269 1311 1.486726 CCCTTCGATGCCTTCTACCTT 59.513 52.381 0.00 0.00 0.00 3.50
1313 1355 3.568538 GTTGCAAGTTCATCGCTTTCAT 58.431 40.909 0.00 0.00 0.00 2.57
1332 1374 1.135960 TCACCCACAACATCCTCACA 58.864 50.000 0.00 0.00 0.00 3.58
1385 1429 2.342279 GCACACTCTGCCGTACCA 59.658 61.111 0.00 0.00 40.42 3.25
1398 1442 1.193650 CCGTACCACATTGACAACACG 59.806 52.381 0.00 0.00 0.00 4.49
1608 1776 6.884280 ATTAAGTTCTTGCTAGTTTGCACT 57.116 33.333 0.00 0.00 43.20 4.40
1917 2151 2.518587 ATCAGCGCATGCAGGCAT 60.519 55.556 24.53 8.32 46.23 4.40
2028 2262 2.983592 CGGCCCAACAGTCCAACC 60.984 66.667 0.00 0.00 0.00 3.77
2113 2348 1.068083 CGACACAGTCCAGTGCAGT 59.932 57.895 0.00 0.00 43.23 4.40
2410 2764 0.107703 CGACAATGGAAGGGCAGCTA 60.108 55.000 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.008327 TGCCATCTTCTACTCCCTCCA 59.992 52.381 0.00 0.00 0.00 3.86
3 4 1.067821 CGTGCCATCTTCTACTCCCTC 59.932 57.143 0.00 0.00 0.00 4.30
5 6 0.105039 CCGTGCCATCTTCTACTCCC 59.895 60.000 0.00 0.00 0.00 4.30
6 7 1.112113 TCCGTGCCATCTTCTACTCC 58.888 55.000 0.00 0.00 0.00 3.85
7 8 1.476891 TGTCCGTGCCATCTTCTACTC 59.523 52.381 0.00 0.00 0.00 2.59
8 9 1.478510 CTGTCCGTGCCATCTTCTACT 59.521 52.381 0.00 0.00 0.00 2.57
9 10 1.476891 TCTGTCCGTGCCATCTTCTAC 59.523 52.381 0.00 0.00 0.00 2.59
10 11 1.751351 CTCTGTCCGTGCCATCTTCTA 59.249 52.381 0.00 0.00 0.00 2.10
11 12 0.534412 CTCTGTCCGTGCCATCTTCT 59.466 55.000 0.00 0.00 0.00 2.85
12 13 0.532573 TCTCTGTCCGTGCCATCTTC 59.467 55.000 0.00 0.00 0.00 2.87
13 14 1.198713 ATCTCTGTCCGTGCCATCTT 58.801 50.000 0.00 0.00 0.00 2.40
14 15 1.198713 AATCTCTGTCCGTGCCATCT 58.801 50.000 0.00 0.00 0.00 2.90
15 16 2.029838 AAATCTCTGTCCGTGCCATC 57.970 50.000 0.00 0.00 0.00 3.51
16 17 3.389329 AGATAAATCTCTGTCCGTGCCAT 59.611 43.478 0.00 0.00 29.30 4.40
17 18 2.766263 AGATAAATCTCTGTCCGTGCCA 59.234 45.455 0.00 0.00 29.30 4.92
18 19 3.126831 CAGATAAATCTCTGTCCGTGCC 58.873 50.000 0.00 0.00 38.27 5.01
37 38 9.086719 GGACATACCTAAGTCTGGATGGTACAG 62.087 48.148 0.00 0.00 36.96 2.74
38 39 7.368998 GGACATACCTAAGTCTGGATGGTACA 61.369 46.154 0.00 0.00 36.29 2.90
39 40 5.010820 GGACATACCTAAGTCTGGATGGTAC 59.989 48.000 0.00 0.00 36.29 3.34
40 41 5.145564 GGACATACCTAAGTCTGGATGGTA 58.854 45.833 0.00 0.00 37.62 3.25
41 42 3.967987 GGACATACCTAAGTCTGGATGGT 59.032 47.826 0.00 0.00 35.18 3.55
42 43 3.967326 TGGACATACCTAAGTCTGGATGG 59.033 47.826 0.00 0.00 39.86 3.51
43 44 5.614324 TTGGACATACCTAAGTCTGGATG 57.386 43.478 0.00 0.00 39.86 3.51
44 45 6.831664 AATTGGACATACCTAAGTCTGGAT 57.168 37.500 0.00 0.00 39.86 3.41
45 46 6.636454 AAATTGGACATACCTAAGTCTGGA 57.364 37.500 0.00 0.00 39.86 3.86
46 47 6.884295 TGAAAATTGGACATACCTAAGTCTGG 59.116 38.462 0.00 0.00 39.86 3.86
47 48 7.824289 TCTGAAAATTGGACATACCTAAGTCTG 59.176 37.037 0.00 0.00 39.86 3.51
48 49 7.918076 TCTGAAAATTGGACATACCTAAGTCT 58.082 34.615 0.00 0.00 39.86 3.24
49 50 7.824779 ACTCTGAAAATTGGACATACCTAAGTC 59.175 37.037 0.00 0.00 39.86 3.01
50 51 7.690256 ACTCTGAAAATTGGACATACCTAAGT 58.310 34.615 0.00 0.00 39.86 2.24
51 52 9.319143 CTACTCTGAAAATTGGACATACCTAAG 57.681 37.037 0.00 0.00 39.86 2.18
52 53 8.822805 ACTACTCTGAAAATTGGACATACCTAA 58.177 33.333 0.00 0.00 39.86 2.69
53 54 8.375493 ACTACTCTGAAAATTGGACATACCTA 57.625 34.615 0.00 0.00 39.86 3.08
54 55 7.181125 AGACTACTCTGAAAATTGGACATACCT 59.819 37.037 0.00 0.00 39.86 3.08
55 56 7.331791 AGACTACTCTGAAAATTGGACATACC 58.668 38.462 0.00 0.00 39.54 2.73
56 57 9.522804 CTAGACTACTCTGAAAATTGGACATAC 57.477 37.037 0.00 0.00 0.00 2.39
57 58 8.696374 CCTAGACTACTCTGAAAATTGGACATA 58.304 37.037 0.00 0.00 0.00 2.29
58 59 7.400339 TCCTAGACTACTCTGAAAATTGGACAT 59.600 37.037 0.00 0.00 0.00 3.06
59 60 6.724441 TCCTAGACTACTCTGAAAATTGGACA 59.276 38.462 0.00 0.00 0.00 4.02
60 61 7.171630 TCCTAGACTACTCTGAAAATTGGAC 57.828 40.000 0.00 0.00 0.00 4.02
61 62 7.455008 ACTTCCTAGACTACTCTGAAAATTGGA 59.545 37.037 0.00 0.00 0.00 3.53
62 63 7.616313 ACTTCCTAGACTACTCTGAAAATTGG 58.384 38.462 0.00 0.00 0.00 3.16
63 64 9.575783 GTACTTCCTAGACTACTCTGAAAATTG 57.424 37.037 0.00 0.00 0.00 2.32
64 65 9.310449 TGTACTTCCTAGACTACTCTGAAAATT 57.690 33.333 0.00 0.00 0.00 1.82
65 66 8.741841 GTGTACTTCCTAGACTACTCTGAAAAT 58.258 37.037 0.00 0.00 0.00 1.82
66 67 7.943447 AGTGTACTTCCTAGACTACTCTGAAAA 59.057 37.037 0.00 0.00 26.97 2.29
67 68 7.390996 CAGTGTACTTCCTAGACTACTCTGAAA 59.609 40.741 0.00 0.00 34.70 2.69
68 69 6.879993 CAGTGTACTTCCTAGACTACTCTGAA 59.120 42.308 0.00 0.00 34.70 3.02
69 70 6.408035 CAGTGTACTTCCTAGACTACTCTGA 58.592 44.000 0.00 0.00 34.70 3.27
70 71 5.065474 GCAGTGTACTTCCTAGACTACTCTG 59.935 48.000 0.00 3.23 35.36 3.35
71 72 5.187687 GCAGTGTACTTCCTAGACTACTCT 58.812 45.833 0.00 0.00 27.80 3.24
72 73 4.336153 GGCAGTGTACTTCCTAGACTACTC 59.664 50.000 0.00 0.00 27.80 2.59
73 74 4.018233 AGGCAGTGTACTTCCTAGACTACT 60.018 45.833 1.21 0.00 37.85 2.57
74 75 4.271661 AGGCAGTGTACTTCCTAGACTAC 58.728 47.826 1.21 0.00 37.85 2.73
75 76 4.587976 AGGCAGTGTACTTCCTAGACTA 57.412 45.455 1.21 0.00 37.85 2.59
76 77 3.459710 AGGCAGTGTACTTCCTAGACT 57.540 47.619 1.21 0.00 37.85 3.24
80 81 4.669700 TGTTCTAGGCAGTGTACTTCCTA 58.330 43.478 9.54 9.54 40.16 2.94
81 82 3.507411 TGTTCTAGGCAGTGTACTTCCT 58.493 45.455 8.26 8.26 42.29 3.36
82 83 3.955650 TGTTCTAGGCAGTGTACTTCC 57.044 47.619 0.00 0.00 0.00 3.46
83 84 4.628074 TGTTGTTCTAGGCAGTGTACTTC 58.372 43.478 0.00 0.00 0.00 3.01
84 85 4.682778 TGTTGTTCTAGGCAGTGTACTT 57.317 40.909 0.00 0.00 0.00 2.24
85 86 4.891992 ATGTTGTTCTAGGCAGTGTACT 57.108 40.909 0.00 0.00 0.00 2.73
86 87 4.994852 TGAATGTTGTTCTAGGCAGTGTAC 59.005 41.667 0.00 0.00 0.00 2.90
87 88 5.221641 ACTGAATGTTGTTCTAGGCAGTGTA 60.222 40.000 0.00 0.00 34.42 2.90
88 89 4.067896 CTGAATGTTGTTCTAGGCAGTGT 58.932 43.478 0.00 0.00 0.00 3.55
89 90 4.067896 ACTGAATGTTGTTCTAGGCAGTG 58.932 43.478 0.00 0.00 34.42 3.66
90 91 4.067896 CACTGAATGTTGTTCTAGGCAGT 58.932 43.478 0.00 0.00 35.92 4.40
91 92 3.120060 GCACTGAATGTTGTTCTAGGCAG 60.120 47.826 0.00 0.00 0.00 4.85
92 93 2.813754 GCACTGAATGTTGTTCTAGGCA 59.186 45.455 0.00 0.00 0.00 4.75
93 94 2.813754 TGCACTGAATGTTGTTCTAGGC 59.186 45.455 0.00 0.00 0.00 3.93
94 95 4.067896 AGTGCACTGAATGTTGTTCTAGG 58.932 43.478 20.97 0.00 0.00 3.02
95 96 5.446709 CAAGTGCACTGAATGTTGTTCTAG 58.553 41.667 22.49 0.00 0.00 2.43
96 97 4.261155 GCAAGTGCACTGAATGTTGTTCTA 60.261 41.667 22.49 0.00 41.59 2.10
97 98 3.489738 GCAAGTGCACTGAATGTTGTTCT 60.490 43.478 22.49 0.00 41.59 3.01
98 99 2.791004 GCAAGTGCACTGAATGTTGTTC 59.209 45.455 22.49 0.00 41.59 3.18
99 100 2.795681 CGCAAGTGCACTGAATGTTGTT 60.796 45.455 22.49 0.00 42.21 2.83
100 101 1.268692 CGCAAGTGCACTGAATGTTGT 60.269 47.619 22.49 0.00 42.21 3.32
101 102 1.401530 CGCAAGTGCACTGAATGTTG 58.598 50.000 22.49 14.81 42.21 3.33
102 103 3.851620 CGCAAGTGCACTGAATGTT 57.148 47.368 22.49 0.00 42.21 2.71
116 117 3.598019 AACGAAGGGAGTATTACGCAA 57.402 42.857 0.00 0.00 0.00 4.85
117 118 3.194116 AGAAACGAAGGGAGTATTACGCA 59.806 43.478 0.00 0.00 0.00 5.24
118 119 3.778618 AGAAACGAAGGGAGTATTACGC 58.221 45.455 0.00 0.00 0.00 4.42
119 120 7.998753 ATTTAGAAACGAAGGGAGTATTACG 57.001 36.000 0.00 0.00 0.00 3.18
124 125 9.822185 GGTTTATATTTAGAAACGAAGGGAGTA 57.178 33.333 0.00 0.00 38.05 2.59
125 126 8.546322 AGGTTTATATTTAGAAACGAAGGGAGT 58.454 33.333 0.00 0.00 38.05 3.85
126 127 8.959705 AGGTTTATATTTAGAAACGAAGGGAG 57.040 34.615 0.00 0.00 38.05 4.30
127 128 9.743581 AAAGGTTTATATTTAGAAACGAAGGGA 57.256 29.630 0.00 0.00 38.05 4.20
146 147 9.320295 TCCATGTTGGAATATCTAAAAAGGTTT 57.680 29.630 0.00 0.00 45.00 3.27
147 148 8.893563 TCCATGTTGGAATATCTAAAAAGGTT 57.106 30.769 0.00 0.00 45.00 3.50
162 163 4.941263 GCTTTGTATGTAGTCCATGTTGGA 59.059 41.667 0.00 0.00 45.98 3.53
163 164 4.699735 TGCTTTGTATGTAGTCCATGTTGG 59.300 41.667 0.00 0.00 39.43 3.77
164 165 5.878332 TGCTTTGTATGTAGTCCATGTTG 57.122 39.130 0.00 0.00 34.86 3.33
165 166 6.892658 TTTGCTTTGTATGTAGTCCATGTT 57.107 33.333 0.00 0.00 34.86 2.71
166 167 6.892658 TTTTGCTTTGTATGTAGTCCATGT 57.107 33.333 0.00 0.00 34.86 3.21
167 168 7.537715 TCATTTTGCTTTGTATGTAGTCCATG 58.462 34.615 0.00 0.00 34.86 3.66
168 169 7.701539 TCATTTTGCTTTGTATGTAGTCCAT 57.298 32.000 0.00 0.00 37.58 3.41
169 170 7.517614 TTCATTTTGCTTTGTATGTAGTCCA 57.482 32.000 0.00 0.00 0.00 4.02
170 171 8.243426 TCATTCATTTTGCTTTGTATGTAGTCC 58.757 33.333 0.00 0.00 0.00 3.85
171 172 9.624697 TTCATTCATTTTGCTTTGTATGTAGTC 57.375 29.630 0.00 0.00 0.00 2.59
179 180 9.715121 AATGTAGATTCATTCATTTTGCTTTGT 57.285 25.926 0.00 0.00 33.43 2.83
214 215 9.577110 CGGACTACTTACAAATGTATTTAGACA 57.423 33.333 12.48 0.00 0.00 3.41
215 216 9.578439 ACGGACTACTTACAAATGTATTTAGAC 57.422 33.333 12.48 8.33 0.00 2.59
222 223 9.926158 TTTCAATACGGACTACTTACAAATGTA 57.074 29.630 0.00 0.00 0.00 2.29
223 224 8.836268 TTTCAATACGGACTACTTACAAATGT 57.164 30.769 0.00 0.00 0.00 2.71
224 225 9.916397 GATTTCAATACGGACTACTTACAAATG 57.084 33.333 0.00 0.00 0.00 2.32
225 226 9.886132 AGATTTCAATACGGACTACTTACAAAT 57.114 29.630 0.00 0.00 0.00 2.32
226 227 9.362539 GAGATTTCAATACGGACTACTTACAAA 57.637 33.333 0.00 0.00 0.00 2.83
227 228 8.746530 AGAGATTTCAATACGGACTACTTACAA 58.253 33.333 0.00 0.00 0.00 2.41
228 229 8.289939 AGAGATTTCAATACGGACTACTTACA 57.710 34.615 0.00 0.00 0.00 2.41
231 232 9.804758 CTTTAGAGATTTCAATACGGACTACTT 57.195 33.333 0.00 0.00 0.00 2.24
232 233 8.968969 ACTTTAGAGATTTCAATACGGACTACT 58.031 33.333 0.00 0.00 0.00 2.57
233 234 9.021863 CACTTTAGAGATTTCAATACGGACTAC 57.978 37.037 0.00 0.00 0.00 2.73
234 235 8.195436 CCACTTTAGAGATTTCAATACGGACTA 58.805 37.037 0.00 0.00 0.00 2.59
235 236 7.042335 CCACTTTAGAGATTTCAATACGGACT 58.958 38.462 0.00 0.00 0.00 3.85
236 237 6.238130 GCCACTTTAGAGATTTCAATACGGAC 60.238 42.308 0.00 0.00 0.00 4.79
237 238 5.815740 GCCACTTTAGAGATTTCAATACGGA 59.184 40.000 0.00 0.00 0.00 4.69
238 239 5.817816 AGCCACTTTAGAGATTTCAATACGG 59.182 40.000 0.00 0.00 0.00 4.02
239 240 6.910536 AGCCACTTTAGAGATTTCAATACG 57.089 37.500 0.00 0.00 0.00 3.06
250 251 9.832445 TGTTCCTAAATATAAGCCACTTTAGAG 57.168 33.333 0.00 0.00 34.56 2.43
251 252 9.832445 CTGTTCCTAAATATAAGCCACTTTAGA 57.168 33.333 0.00 0.00 34.56 2.10
252 253 9.832445 TCTGTTCCTAAATATAAGCCACTTTAG 57.168 33.333 0.00 0.00 33.16 1.85
253 254 9.832445 CTCTGTTCCTAAATATAAGCCACTTTA 57.168 33.333 0.00 0.00 0.00 1.85
254 255 7.775561 CCTCTGTTCCTAAATATAAGCCACTTT 59.224 37.037 0.00 0.00 0.00 2.66
255 256 7.283329 CCTCTGTTCCTAAATATAAGCCACTT 58.717 38.462 0.00 0.00 0.00 3.16
256 257 6.183361 CCCTCTGTTCCTAAATATAAGCCACT 60.183 42.308 0.00 0.00 0.00 4.00
257 258 5.998363 CCCTCTGTTCCTAAATATAAGCCAC 59.002 44.000 0.00 0.00 0.00 5.01
258 259 5.908831 TCCCTCTGTTCCTAAATATAAGCCA 59.091 40.000 0.00 0.00 0.00 4.75
259 260 6.043358 ACTCCCTCTGTTCCTAAATATAAGCC 59.957 42.308 0.00 0.00 0.00 4.35
260 261 7.068686 ACTCCCTCTGTTCCTAAATATAAGC 57.931 40.000 0.00 0.00 0.00 3.09
265 266 9.892444 TGATTATACTCCCTCTGTTCCTAAATA 57.108 33.333 0.00 0.00 0.00 1.40
266 267 8.798975 TGATTATACTCCCTCTGTTCCTAAAT 57.201 34.615 0.00 0.00 0.00 1.40
267 268 8.798975 ATGATTATACTCCCTCTGTTCCTAAA 57.201 34.615 0.00 0.00 0.00 1.85
268 269 9.892444 TTATGATTATACTCCCTCTGTTCCTAA 57.108 33.333 0.00 0.00 0.00 2.69
269 270 9.892444 TTTATGATTATACTCCCTCTGTTCCTA 57.108 33.333 0.00 0.00 0.00 2.94
270 271 8.798975 TTTATGATTATACTCCCTCTGTTCCT 57.201 34.615 0.00 0.00 0.00 3.36
271 272 9.660180 GATTTATGATTATACTCCCTCTGTTCC 57.340 37.037 0.00 0.00 0.00 3.62
274 275 9.159254 TGTGATTTATGATTATACTCCCTCTGT 57.841 33.333 0.00 0.00 0.00 3.41
347 348 4.586001 AGATTGCCCCACAAACATGATATC 59.414 41.667 0.00 0.00 42.86 1.63
348 349 4.342951 CAGATTGCCCCACAAACATGATAT 59.657 41.667 0.00 0.00 42.86 1.63
349 350 3.700539 CAGATTGCCCCACAAACATGATA 59.299 43.478 0.00 0.00 42.86 2.15
350 351 2.498481 CAGATTGCCCCACAAACATGAT 59.502 45.455 0.00 0.00 42.86 2.45
351 352 1.894466 CAGATTGCCCCACAAACATGA 59.106 47.619 0.00 0.00 42.86 3.07
352 353 1.619827 ACAGATTGCCCCACAAACATG 59.380 47.619 0.00 0.00 42.86 3.21
353 354 2.014010 ACAGATTGCCCCACAAACAT 57.986 45.000 0.00 0.00 42.86 2.71
354 355 1.411977 CAACAGATTGCCCCACAAACA 59.588 47.619 0.00 0.00 42.86 2.83
355 356 2.153366 CAACAGATTGCCCCACAAAC 57.847 50.000 0.00 0.00 42.86 2.93
373 374 4.556550 AGGAACTAAACATTGCAACCGCA 61.557 43.478 0.00 0.00 42.92 5.69
374 375 2.030274 AGGAACTAAACATTGCAACCGC 60.030 45.455 0.00 0.00 36.02 5.68
375 376 3.915437 AGGAACTAAACATTGCAACCG 57.085 42.857 0.00 0.00 36.02 4.44
392 393 9.653287 CAGAACACAATCATAGTTAACTTAGGA 57.347 33.333 14.49 9.46 0.00 2.94
393 394 8.391106 GCAGAACACAATCATAGTTAACTTAGG 58.609 37.037 14.49 4.08 0.00 2.69
394 395 9.155975 AGCAGAACACAATCATAGTTAACTTAG 57.844 33.333 14.49 7.03 0.00 2.18
395 396 9.502091 AAGCAGAACACAATCATAGTTAACTTA 57.498 29.630 14.49 0.34 0.00 2.24
396 397 7.986085 AGCAGAACACAATCATAGTTAACTT 57.014 32.000 14.49 0.00 0.00 2.66
397 398 7.986085 AAGCAGAACACAATCATAGTTAACT 57.014 32.000 13.68 13.68 0.00 2.24
427 428 9.729023 CAACTGAACATGTGTAAACTTCATTAA 57.271 29.630 0.00 0.00 0.00 1.40
428 429 8.349245 CCAACTGAACATGTGTAAACTTCATTA 58.651 33.333 0.00 0.00 0.00 1.90
429 430 7.202526 CCAACTGAACATGTGTAAACTTCATT 58.797 34.615 0.00 0.00 0.00 2.57
430 431 6.735694 GCCAACTGAACATGTGTAAACTTCAT 60.736 38.462 0.00 0.00 0.00 2.57
431 432 5.449862 GCCAACTGAACATGTGTAAACTTCA 60.450 40.000 0.00 0.00 0.00 3.02
432 433 4.976116 GCCAACTGAACATGTGTAAACTTC 59.024 41.667 0.00 0.00 0.00 3.01
433 434 4.400884 TGCCAACTGAACATGTGTAAACTT 59.599 37.500 0.00 0.00 0.00 2.66
434 435 3.951037 TGCCAACTGAACATGTGTAAACT 59.049 39.130 0.00 0.00 0.00 2.66
435 436 4.300189 TGCCAACTGAACATGTGTAAAC 57.700 40.909 0.00 0.00 0.00 2.01
436 437 5.068329 TGAATGCCAACTGAACATGTGTAAA 59.932 36.000 0.00 0.00 0.00 2.01
437 438 4.582240 TGAATGCCAACTGAACATGTGTAA 59.418 37.500 0.00 0.00 0.00 2.41
438 439 4.140536 TGAATGCCAACTGAACATGTGTA 58.859 39.130 0.00 0.00 0.00 2.90
439 440 2.957680 TGAATGCCAACTGAACATGTGT 59.042 40.909 0.00 0.00 0.00 3.72
440 441 3.646611 TGAATGCCAACTGAACATGTG 57.353 42.857 0.00 0.00 0.00 3.21
441 442 4.182693 CATGAATGCCAACTGAACATGT 57.817 40.909 0.00 0.00 32.11 3.21
455 456 9.362539 ACTGCTAAAAGAAATAAAGCATGAATG 57.637 29.630 0.00 0.00 41.93 2.67
456 457 9.933723 AACTGCTAAAAGAAATAAAGCATGAAT 57.066 25.926 0.00 0.00 41.93 2.57
457 458 9.762933 AAACTGCTAAAAGAAATAAAGCATGAA 57.237 25.926 0.00 0.00 41.93 2.57
461 462 9.677567 CAGTAAACTGCTAAAAGAAATAAAGCA 57.322 29.630 0.00 0.00 40.68 3.91
462 463 9.893305 TCAGTAAACTGCTAAAAGAAATAAAGC 57.107 29.630 5.21 0.00 43.46 3.51
471 472 9.897744 TGAAAATGATCAGTAAACTGCTAAAAG 57.102 29.630 0.09 0.00 43.46 2.27
472 473 9.897744 CTGAAAATGATCAGTAAACTGCTAAAA 57.102 29.630 0.09 0.00 43.46 1.52
473 474 9.283768 TCTGAAAATGATCAGTAAACTGCTAAA 57.716 29.630 0.09 0.00 45.65 1.85
474 475 8.721478 GTCTGAAAATGATCAGTAAACTGCTAA 58.279 33.333 0.09 0.00 45.65 3.09
475 476 7.877612 TGTCTGAAAATGATCAGTAAACTGCTA 59.122 33.333 0.09 0.00 45.65 3.49
476 477 6.712095 TGTCTGAAAATGATCAGTAAACTGCT 59.288 34.615 0.09 0.00 45.65 4.24
477 478 6.902341 TGTCTGAAAATGATCAGTAAACTGC 58.098 36.000 0.09 0.00 45.65 4.40
506 507 9.846248 GAAACATGAGTTGCAGAGTTTTTATAT 57.154 29.630 0.00 0.00 38.20 0.86
507 508 8.296713 GGAAACATGAGTTGCAGAGTTTTTATA 58.703 33.333 0.00 0.00 38.20 0.98
508 509 7.014615 AGGAAACATGAGTTGCAGAGTTTTTAT 59.985 33.333 0.00 0.00 38.20 1.40
509 510 6.321181 AGGAAACATGAGTTGCAGAGTTTTTA 59.679 34.615 0.00 0.00 38.20 1.52
510 511 5.127682 AGGAAACATGAGTTGCAGAGTTTTT 59.872 36.000 0.00 0.00 38.20 1.94
511 512 4.646492 AGGAAACATGAGTTGCAGAGTTTT 59.354 37.500 0.00 0.00 38.20 2.43
512 513 4.210331 AGGAAACATGAGTTGCAGAGTTT 58.790 39.130 0.00 0.00 39.72 2.66
513 514 3.825328 AGGAAACATGAGTTGCAGAGTT 58.175 40.909 0.00 0.00 38.17 3.01
514 515 3.498774 AGGAAACATGAGTTGCAGAGT 57.501 42.857 0.00 0.00 38.17 3.24
515 516 4.070716 AGAAGGAAACATGAGTTGCAGAG 58.929 43.478 0.00 0.00 38.17 3.35
516 517 3.817084 CAGAAGGAAACATGAGTTGCAGA 59.183 43.478 0.00 0.00 38.17 4.26
517 518 3.817084 TCAGAAGGAAACATGAGTTGCAG 59.183 43.478 0.00 0.00 38.17 4.41
518 519 3.819368 TCAGAAGGAAACATGAGTTGCA 58.181 40.909 0.00 0.00 38.17 4.08
519 520 4.836125 TTCAGAAGGAAACATGAGTTGC 57.164 40.909 0.00 0.00 38.17 4.17
537 538 9.770097 TGTTGCTTTATCCAAAATAATGTTTCA 57.230 25.926 0.00 0.00 0.00 2.69
540 541 9.995003 TCTTGTTGCTTTATCCAAAATAATGTT 57.005 25.926 0.00 0.00 0.00 2.71
541 542 9.643693 CTCTTGTTGCTTTATCCAAAATAATGT 57.356 29.630 0.00 0.00 0.00 2.71
542 543 9.643693 ACTCTTGTTGCTTTATCCAAAATAATG 57.356 29.630 0.00 0.00 0.00 1.90
543 544 9.643693 CACTCTTGTTGCTTTATCCAAAATAAT 57.356 29.630 0.00 0.00 0.00 1.28
544 545 8.637986 ACACTCTTGTTGCTTTATCCAAAATAA 58.362 29.630 0.00 0.00 28.43 1.40
545 546 8.081633 CACACTCTTGTTGCTTTATCCAAAATA 58.918 33.333 0.00 0.00 31.66 1.40
546 547 6.925165 CACACTCTTGTTGCTTTATCCAAAAT 59.075 34.615 0.00 0.00 31.66 1.82
547 548 6.127479 ACACACTCTTGTTGCTTTATCCAAAA 60.127 34.615 0.00 0.00 31.66 2.44
548 549 5.359576 ACACACTCTTGTTGCTTTATCCAAA 59.640 36.000 0.00 0.00 31.66 3.28
549 550 4.887071 ACACACTCTTGTTGCTTTATCCAA 59.113 37.500 0.00 0.00 31.66 3.53
550 551 4.460263 ACACACTCTTGTTGCTTTATCCA 58.540 39.130 0.00 0.00 31.66 3.41
551 552 5.438761 AACACACTCTTGTTGCTTTATCC 57.561 39.130 0.00 0.00 38.31 2.59
552 553 7.072030 CAGTAACACACTCTTGTTGCTTTATC 58.928 38.462 4.14 0.00 46.52 1.75
553 554 6.513393 GCAGTAACACACTCTTGTTGCTTTAT 60.513 38.462 4.14 0.00 46.52 1.40
554 555 5.220777 GCAGTAACACACTCTTGTTGCTTTA 60.221 40.000 4.14 0.00 46.52 1.85
555 556 4.438744 GCAGTAACACACTCTTGTTGCTTT 60.439 41.667 4.14 0.00 46.52 3.51
556 557 3.065371 GCAGTAACACACTCTTGTTGCTT 59.935 43.478 4.14 0.00 46.52 3.91
558 559 2.287009 GGCAGTAACACACTCTTGTTGC 60.287 50.000 0.00 0.00 40.04 4.17
559 560 3.002656 CAGGCAGTAACACACTCTTGTTG 59.997 47.826 0.00 0.00 40.04 3.33
560 561 3.206150 CAGGCAGTAACACACTCTTGTT 58.794 45.455 0.00 0.00 42.46 2.83
561 562 2.170607 ACAGGCAGTAACACACTCTTGT 59.829 45.455 0.00 0.00 34.26 3.16
562 563 2.838736 ACAGGCAGTAACACACTCTTG 58.161 47.619 0.00 0.00 34.26 3.02
563 564 4.040461 ACATACAGGCAGTAACACACTCTT 59.960 41.667 0.00 0.00 34.26 2.85
564 565 3.578716 ACATACAGGCAGTAACACACTCT 59.421 43.478 0.00 0.00 34.26 3.24
565 566 3.926616 ACATACAGGCAGTAACACACTC 58.073 45.455 0.00 0.00 34.26 3.51
566 567 4.351874 AACATACAGGCAGTAACACACT 57.648 40.909 0.00 0.00 38.32 3.55
567 568 6.737254 ATAAACATACAGGCAGTAACACAC 57.263 37.500 0.00 0.00 36.05 3.82
568 569 6.150307 CCAATAAACATACAGGCAGTAACACA 59.850 38.462 0.00 0.00 36.05 3.72
569 570 6.551736 CCAATAAACATACAGGCAGTAACAC 58.448 40.000 0.00 0.00 36.05 3.32
570 571 5.124776 GCCAATAAACATACAGGCAGTAACA 59.875 40.000 0.00 0.00 41.63 2.41
571 572 5.357032 AGCCAATAAACATACAGGCAGTAAC 59.643 40.000 0.00 0.00 44.34 2.50
572 573 5.356751 CAGCCAATAAACATACAGGCAGTAA 59.643 40.000 0.00 0.00 44.34 2.24
573 574 4.881273 CAGCCAATAAACATACAGGCAGTA 59.119 41.667 0.00 0.00 44.34 2.74
574 575 3.696051 CAGCCAATAAACATACAGGCAGT 59.304 43.478 0.00 0.00 44.34 4.40
575 576 3.696051 ACAGCCAATAAACATACAGGCAG 59.304 43.478 0.00 0.00 44.34 4.85
576 577 3.696045 ACAGCCAATAAACATACAGGCA 58.304 40.909 0.00 0.00 44.34 4.75
577 578 4.881850 AGTACAGCCAATAAACATACAGGC 59.118 41.667 0.00 0.00 42.31 4.85
578 579 7.391148 AAAGTACAGCCAATAAACATACAGG 57.609 36.000 0.00 0.00 0.00 4.00
579 580 8.511321 TCAAAAGTACAGCCAATAAACATACAG 58.489 33.333 0.00 0.00 0.00 2.74
580 581 8.397575 TCAAAAGTACAGCCAATAAACATACA 57.602 30.769 0.00 0.00 0.00 2.29
581 582 9.503427 GATCAAAAGTACAGCCAATAAACATAC 57.497 33.333 0.00 0.00 0.00 2.39
582 583 9.461312 AGATCAAAAGTACAGCCAATAAACATA 57.539 29.630 0.00 0.00 0.00 2.29
583 584 8.246180 CAGATCAAAAGTACAGCCAATAAACAT 58.754 33.333 0.00 0.00 0.00 2.71
584 585 7.592938 CAGATCAAAAGTACAGCCAATAAACA 58.407 34.615 0.00 0.00 0.00 2.83
585 586 6.528072 GCAGATCAAAAGTACAGCCAATAAAC 59.472 38.462 0.00 0.00 0.00 2.01
586 587 6.434028 AGCAGATCAAAAGTACAGCCAATAAA 59.566 34.615 0.00 0.00 0.00 1.40
587 588 5.945784 AGCAGATCAAAAGTACAGCCAATAA 59.054 36.000 0.00 0.00 0.00 1.40
588 589 5.500234 AGCAGATCAAAAGTACAGCCAATA 58.500 37.500 0.00 0.00 0.00 1.90
589 590 4.338879 AGCAGATCAAAAGTACAGCCAAT 58.661 39.130 0.00 0.00 0.00 3.16
590 591 3.754965 AGCAGATCAAAAGTACAGCCAA 58.245 40.909 0.00 0.00 0.00 4.52
591 592 3.423539 AGCAGATCAAAAGTACAGCCA 57.576 42.857 0.00 0.00 0.00 4.75
592 593 4.773323 AAAGCAGATCAAAAGTACAGCC 57.227 40.909 0.00 0.00 0.00 4.85
593 594 5.523369 ACAAAAGCAGATCAAAAGTACAGC 58.477 37.500 0.00 0.00 0.00 4.40
594 595 8.128582 TGTAACAAAAGCAGATCAAAAGTACAG 58.871 33.333 0.00 0.00 0.00 2.74
595 596 7.990917 TGTAACAAAAGCAGATCAAAAGTACA 58.009 30.769 0.00 0.00 0.00 2.90
596 597 8.850454 TTGTAACAAAAGCAGATCAAAAGTAC 57.150 30.769 0.00 0.00 0.00 2.73
597 598 8.898761 TCTTGTAACAAAAGCAGATCAAAAGTA 58.101 29.630 0.00 0.00 0.00 2.24
598 599 7.702348 GTCTTGTAACAAAAGCAGATCAAAAGT 59.298 33.333 0.00 0.00 0.00 2.66
599 600 7.701924 TGTCTTGTAACAAAAGCAGATCAAAAG 59.298 33.333 0.00 0.00 0.00 2.27
600 601 7.542890 TGTCTTGTAACAAAAGCAGATCAAAA 58.457 30.769 0.00 0.00 0.00 2.44
601 602 7.094508 TGTCTTGTAACAAAAGCAGATCAAA 57.905 32.000 0.00 0.00 0.00 2.69
602 603 6.691754 TGTCTTGTAACAAAAGCAGATCAA 57.308 33.333 0.00 0.00 0.00 2.57
603 604 6.882610 ATGTCTTGTAACAAAAGCAGATCA 57.117 33.333 0.00 0.00 31.81 2.92
604 605 7.862372 TGAAATGTCTTGTAACAAAAGCAGATC 59.138 33.333 0.00 0.00 31.81 2.75
605 606 7.715657 TGAAATGTCTTGTAACAAAAGCAGAT 58.284 30.769 0.00 0.00 31.81 2.90
606 607 7.094508 TGAAATGTCTTGTAACAAAAGCAGA 57.905 32.000 0.00 0.00 31.81 4.26
607 608 7.648908 TGATGAAATGTCTTGTAACAAAAGCAG 59.351 33.333 0.00 0.00 31.81 4.24
608 609 7.487484 TGATGAAATGTCTTGTAACAAAAGCA 58.513 30.769 0.00 0.00 31.81 3.91
609 610 7.928908 TGATGAAATGTCTTGTAACAAAAGC 57.071 32.000 0.00 0.00 31.81 3.51
633 634 9.630098 CAATAAAAGCATGTCTACACAAGAATT 57.370 29.630 0.00 0.00 35.64 2.17
634 635 8.246180 CCAATAAAAGCATGTCTACACAAGAAT 58.754 33.333 0.00 0.00 35.64 2.40
635 636 7.230510 ACCAATAAAAGCATGTCTACACAAGAA 59.769 33.333 0.00 0.00 35.64 2.52
636 637 6.714810 ACCAATAAAAGCATGTCTACACAAGA 59.285 34.615 0.00 0.00 35.64 3.02
637 638 6.913170 ACCAATAAAAGCATGTCTACACAAG 58.087 36.000 0.00 0.00 35.64 3.16
638 639 6.892658 ACCAATAAAAGCATGTCTACACAA 57.107 33.333 0.00 0.00 35.64 3.33
639 640 6.892658 AACCAATAAAAGCATGTCTACACA 57.107 33.333 0.00 0.00 36.78 3.72
640 641 6.089417 GCAAACCAATAAAAGCATGTCTACAC 59.911 38.462 0.00 0.00 0.00 2.90
641 642 6.015519 AGCAAACCAATAAAAGCATGTCTACA 60.016 34.615 0.00 0.00 0.00 2.74
642 643 6.389906 AGCAAACCAATAAAAGCATGTCTAC 58.610 36.000 0.00 0.00 0.00 2.59
643 644 6.588719 AGCAAACCAATAAAAGCATGTCTA 57.411 33.333 0.00 0.00 0.00 2.59
644 645 5.473066 AGCAAACCAATAAAAGCATGTCT 57.527 34.783 0.00 0.00 0.00 3.41
645 646 5.928264 AGAAGCAAACCAATAAAAGCATGTC 59.072 36.000 0.00 0.00 0.00 3.06
646 647 5.857268 AGAAGCAAACCAATAAAAGCATGT 58.143 33.333 0.00 0.00 0.00 3.21
647 648 7.887996 TTAGAAGCAAACCAATAAAAGCATG 57.112 32.000 0.00 0.00 0.00 4.06
648 649 8.938906 CATTTAGAAGCAAACCAATAAAAGCAT 58.061 29.630 0.00 0.00 0.00 3.79
649 650 7.095271 GCATTTAGAAGCAAACCAATAAAAGCA 60.095 33.333 0.00 0.00 31.06 3.91
650 651 7.095271 TGCATTTAGAAGCAAACCAATAAAAGC 60.095 33.333 0.00 0.00 37.90 3.51
651 652 8.309163 TGCATTTAGAAGCAAACCAATAAAAG 57.691 30.769 0.00 0.00 37.90 2.27
652 653 8.845413 ATGCATTTAGAAGCAAACCAATAAAA 57.155 26.923 0.00 0.00 44.88 1.52
653 654 8.313292 AGATGCATTTAGAAGCAAACCAATAAA 58.687 29.630 0.00 0.00 44.88 1.40
654 655 7.839907 AGATGCATTTAGAAGCAAACCAATAA 58.160 30.769 0.00 0.00 44.88 1.40
655 656 7.408756 AGATGCATTTAGAAGCAAACCAATA 57.591 32.000 0.00 0.00 44.88 1.90
656 657 6.290294 AGATGCATTTAGAAGCAAACCAAT 57.710 33.333 0.00 0.00 44.88 3.16
657 658 5.726980 AGATGCATTTAGAAGCAAACCAA 57.273 34.783 0.00 0.00 44.88 3.67
658 659 5.726980 AAGATGCATTTAGAAGCAAACCA 57.273 34.783 0.00 0.00 44.88 3.67
659 660 8.193438 AGATAAAGATGCATTTAGAAGCAAACC 58.807 33.333 0.00 0.00 44.88 3.27
660 661 9.017669 CAGATAAAGATGCATTTAGAAGCAAAC 57.982 33.333 0.00 0.00 44.88 2.93
661 662 7.703621 GCAGATAAAGATGCATTTAGAAGCAAA 59.296 33.333 0.00 0.00 44.88 3.68
662 663 7.148035 TGCAGATAAAGATGCATTTAGAAGCAA 60.148 33.333 0.00 0.00 46.97 3.91
663 664 6.319405 TGCAGATAAAGATGCATTTAGAAGCA 59.681 34.615 0.00 6.25 46.97 3.91
664 665 6.732154 TGCAGATAAAGATGCATTTAGAAGC 58.268 36.000 0.00 3.84 46.97 3.86
674 675 4.260948 GCCTACAAGTGCAGATAAAGATGC 60.261 45.833 0.00 0.00 42.86 3.91
675 676 5.121811 AGCCTACAAGTGCAGATAAAGATG 58.878 41.667 0.00 0.00 0.00 2.90
676 677 5.130145 AGAGCCTACAAGTGCAGATAAAGAT 59.870 40.000 0.00 0.00 0.00 2.40
677 678 4.467795 AGAGCCTACAAGTGCAGATAAAGA 59.532 41.667 0.00 0.00 0.00 2.52
678 679 4.569966 CAGAGCCTACAAGTGCAGATAAAG 59.430 45.833 0.00 0.00 0.00 1.85
679 680 4.507710 CAGAGCCTACAAGTGCAGATAAA 58.492 43.478 0.00 0.00 0.00 1.40
680 681 3.679917 GCAGAGCCTACAAGTGCAGATAA 60.680 47.826 0.00 0.00 34.18 1.75
681 682 2.159043 GCAGAGCCTACAAGTGCAGATA 60.159 50.000 0.00 0.00 34.18 1.98
682 683 1.406614 GCAGAGCCTACAAGTGCAGAT 60.407 52.381 0.00 0.00 34.18 2.90
683 684 0.036952 GCAGAGCCTACAAGTGCAGA 60.037 55.000 0.00 0.00 34.18 4.26
684 685 1.357258 CGCAGAGCCTACAAGTGCAG 61.357 60.000 0.00 0.00 33.59 4.41
685 686 1.374631 CGCAGAGCCTACAAGTGCA 60.375 57.895 0.00 0.00 33.59 4.57
686 687 2.103042 CCGCAGAGCCTACAAGTGC 61.103 63.158 0.00 0.00 0.00 4.40
687 688 1.448540 CCCGCAGAGCCTACAAGTG 60.449 63.158 0.00 0.00 0.00 3.16
688 689 0.978146 ATCCCGCAGAGCCTACAAGT 60.978 55.000 0.00 0.00 0.00 3.16
689 690 0.179000 AATCCCGCAGAGCCTACAAG 59.821 55.000 0.00 0.00 0.00 3.16
690 691 0.618458 AAATCCCGCAGAGCCTACAA 59.382 50.000 0.00 0.00 0.00 2.41
691 692 0.107703 CAAATCCCGCAGAGCCTACA 60.108 55.000 0.00 0.00 0.00 2.74
692 693 0.178068 TCAAATCCCGCAGAGCCTAC 59.822 55.000 0.00 0.00 0.00 3.18
693 694 1.131638 ATCAAATCCCGCAGAGCCTA 58.868 50.000 0.00 0.00 0.00 3.93
694 695 0.465097 CATCAAATCCCGCAGAGCCT 60.465 55.000 0.00 0.00 0.00 4.58
695 696 0.464373 TCATCAAATCCCGCAGAGCC 60.464 55.000 0.00 0.00 0.00 4.70
696 697 1.266175 CATCATCAAATCCCGCAGAGC 59.734 52.381 0.00 0.00 0.00 4.09
697 698 2.569059 ACATCATCAAATCCCGCAGAG 58.431 47.619 0.00 0.00 0.00 3.35
698 699 2.715749 ACATCATCAAATCCCGCAGA 57.284 45.000 0.00 0.00 0.00 4.26
699 700 3.365666 GCATACATCATCAAATCCCGCAG 60.366 47.826 0.00 0.00 0.00 5.18
700 701 2.553602 GCATACATCATCAAATCCCGCA 59.446 45.455 0.00 0.00 0.00 5.69
701 702 2.413239 CGCATACATCATCAAATCCCGC 60.413 50.000 0.00 0.00 0.00 6.13
702 703 3.066380 TCGCATACATCATCAAATCCCG 58.934 45.455 0.00 0.00 0.00 5.14
703 704 5.048504 ACATTCGCATACATCATCAAATCCC 60.049 40.000 0.00 0.00 0.00 3.85
704 705 6.005583 ACATTCGCATACATCATCAAATCC 57.994 37.500 0.00 0.00 0.00 3.01
705 706 6.795593 CAGACATTCGCATACATCATCAAATC 59.204 38.462 0.00 0.00 0.00 2.17
706 707 6.484308 TCAGACATTCGCATACATCATCAAAT 59.516 34.615 0.00 0.00 0.00 2.32
707 708 5.816777 TCAGACATTCGCATACATCATCAAA 59.183 36.000 0.00 0.00 0.00 2.69
708 709 5.358922 TCAGACATTCGCATACATCATCAA 58.641 37.500 0.00 0.00 0.00 2.57
709 710 4.947645 TCAGACATTCGCATACATCATCA 58.052 39.130 0.00 0.00 0.00 3.07
710 711 5.912360 TTCAGACATTCGCATACATCATC 57.088 39.130 0.00 0.00 0.00 2.92
711 712 7.658982 ACTTATTCAGACATTCGCATACATCAT 59.341 33.333 0.00 0.00 0.00 2.45
712 713 6.986231 ACTTATTCAGACATTCGCATACATCA 59.014 34.615 0.00 0.00 0.00 3.07
713 714 7.359598 GGACTTATTCAGACATTCGCATACATC 60.360 40.741 0.00 0.00 0.00 3.06
714 715 6.425114 GGACTTATTCAGACATTCGCATACAT 59.575 38.462 0.00 0.00 0.00 2.29
715 716 5.753438 GGACTTATTCAGACATTCGCATACA 59.247 40.000 0.00 0.00 0.00 2.29
716 717 5.986135 AGGACTTATTCAGACATTCGCATAC 59.014 40.000 0.00 0.00 0.00 2.39
717 718 5.985530 CAGGACTTATTCAGACATTCGCATA 59.014 40.000 0.00 0.00 0.00 3.14
718 719 4.813161 CAGGACTTATTCAGACATTCGCAT 59.187 41.667 0.00 0.00 0.00 4.73
719 720 4.081697 TCAGGACTTATTCAGACATTCGCA 60.082 41.667 0.00 0.00 0.00 5.10
720 721 4.433615 TCAGGACTTATTCAGACATTCGC 58.566 43.478 0.00 0.00 0.00 4.70
721 722 7.545362 AATTCAGGACTTATTCAGACATTCG 57.455 36.000 0.00 0.00 0.00 3.34
722 723 9.171877 AGAAATTCAGGACTTATTCAGACATTC 57.828 33.333 0.00 0.00 0.00 2.67
723 724 9.525826 AAGAAATTCAGGACTTATTCAGACATT 57.474 29.630 0.00 0.00 0.00 2.71
724 725 9.171877 GAAGAAATTCAGGACTTATTCAGACAT 57.828 33.333 0.00 0.00 0.00 3.06
725 726 7.607991 GGAAGAAATTCAGGACTTATTCAGACA 59.392 37.037 0.00 0.00 0.00 3.41
726 727 7.607991 TGGAAGAAATTCAGGACTTATTCAGAC 59.392 37.037 0.00 0.00 0.00 3.51
727 728 7.689299 TGGAAGAAATTCAGGACTTATTCAGA 58.311 34.615 0.00 0.00 0.00 3.27
728 729 7.928307 TGGAAGAAATTCAGGACTTATTCAG 57.072 36.000 0.00 0.00 0.00 3.02
729 730 7.723616 TGTTGGAAGAAATTCAGGACTTATTCA 59.276 33.333 0.00 0.00 0.00 2.57
730 731 8.110860 TGTTGGAAGAAATTCAGGACTTATTC 57.889 34.615 0.00 0.00 0.00 1.75
731 732 8.477419 TTGTTGGAAGAAATTCAGGACTTATT 57.523 30.769 0.00 0.00 0.00 1.40
732 733 8.477419 TTTGTTGGAAGAAATTCAGGACTTAT 57.523 30.769 0.00 0.00 0.00 1.73
733 734 7.889873 TTTGTTGGAAGAAATTCAGGACTTA 57.110 32.000 0.00 0.00 0.00 2.24
734 735 6.790232 TTTGTTGGAAGAAATTCAGGACTT 57.210 33.333 0.00 0.00 0.00 3.01
735 736 6.983906 ATTTGTTGGAAGAAATTCAGGACT 57.016 33.333 0.00 0.00 28.67 3.85
736 737 8.023706 GTCTATTTGTTGGAAGAAATTCAGGAC 58.976 37.037 0.00 2.47 34.29 3.85
737 738 7.723616 TGTCTATTTGTTGGAAGAAATTCAGGA 59.276 33.333 0.00 0.00 34.29 3.86
738 739 7.809806 GTGTCTATTTGTTGGAAGAAATTCAGG 59.190 37.037 0.00 0.00 34.29 3.86
739 740 8.352201 TGTGTCTATTTGTTGGAAGAAATTCAG 58.648 33.333 0.00 0.00 34.29 3.02
740 741 8.134895 GTGTGTCTATTTGTTGGAAGAAATTCA 58.865 33.333 0.00 0.00 34.29 2.57
741 742 8.352942 AGTGTGTCTATTTGTTGGAAGAAATTC 58.647 33.333 0.37 0.00 34.29 2.17
742 743 8.237811 AGTGTGTCTATTTGTTGGAAGAAATT 57.762 30.769 0.37 0.00 34.29 1.82
743 744 7.823745 AGTGTGTCTATTTGTTGGAAGAAAT 57.176 32.000 0.77 0.77 36.14 2.17
744 745 8.740123 TTAGTGTGTCTATTTGTTGGAAGAAA 57.260 30.769 0.00 0.00 0.00 2.52
745 746 8.918202 ATTAGTGTGTCTATTTGTTGGAAGAA 57.082 30.769 0.00 0.00 0.00 2.52
746 747 8.918202 AATTAGTGTGTCTATTTGTTGGAAGA 57.082 30.769 0.00 0.00 0.00 2.87
758 759 9.871238 GGTTTCTGAATCTAATTAGTGTGTCTA 57.129 33.333 12.19 0.00 0.00 2.59
759 760 8.598041 AGGTTTCTGAATCTAATTAGTGTGTCT 58.402 33.333 12.19 0.00 0.00 3.41
760 761 8.779354 AGGTTTCTGAATCTAATTAGTGTGTC 57.221 34.615 12.19 6.48 0.00 3.67
772 773 8.601546 ACTCAATCTCTTTAGGTTTCTGAATCT 58.398 33.333 0.00 0.00 0.00 2.40
773 774 8.785329 ACTCAATCTCTTTAGGTTTCTGAATC 57.215 34.615 0.00 0.00 0.00 2.52
774 775 9.225436 GAACTCAATCTCTTTAGGTTTCTGAAT 57.775 33.333 0.00 0.00 0.00 2.57
775 776 7.661847 GGAACTCAATCTCTTTAGGTTTCTGAA 59.338 37.037 0.00 0.00 0.00 3.02
776 777 7.016661 AGGAACTCAATCTCTTTAGGTTTCTGA 59.983 37.037 0.00 0.00 0.00 3.27
777 778 7.118971 CAGGAACTCAATCTCTTTAGGTTTCTG 59.881 40.741 0.00 0.00 34.60 3.02
778 779 7.016661 TCAGGAACTCAATCTCTTTAGGTTTCT 59.983 37.037 0.00 0.00 34.60 2.52
779 780 7.162082 TCAGGAACTCAATCTCTTTAGGTTTC 58.838 38.462 0.00 0.00 34.60 2.78
780 781 7.079451 TCAGGAACTCAATCTCTTTAGGTTT 57.921 36.000 0.00 0.00 34.60 3.27
781 782 6.688073 TCAGGAACTCAATCTCTTTAGGTT 57.312 37.500 0.00 0.00 34.60 3.50
787 788 3.681034 CGGCATCAGGAACTCAATCTCTT 60.681 47.826 0.00 0.00 34.60 2.85
812 813 0.036164 TAGCTCGTTTGCACACCCAT 59.964 50.000 0.00 0.00 34.99 4.00
911 912 2.961510 AGATGAGGGATGTGAGAGGAG 58.038 52.381 0.00 0.00 0.00 3.69
995 1021 0.692476 TCCAGTGTACTGCATGGCTT 59.308 50.000 6.50 0.00 42.47 4.35
1040 1066 1.801771 CAGTATAGAGCCTCTCCGACG 59.198 57.143 0.00 0.00 0.00 5.12
1129 1155 0.733223 GACGTGAGGAAGAACTCGGC 60.733 60.000 0.00 0.00 40.39 5.54
1238 1280 0.322546 ATCGAAGGGGTTGGTGAAGC 60.323 55.000 0.00 0.00 0.00 3.86
1269 1311 3.342627 CAAAACACGCGCCCGAGA 61.343 61.111 5.73 0.00 38.29 4.04
1313 1355 1.072173 CTGTGAGGATGTTGTGGGTGA 59.928 52.381 0.00 0.00 0.00 4.02
1332 1374 2.237392 GGGGAAGATGTTGCTGTACTCT 59.763 50.000 0.00 0.00 0.00 3.24
1385 1429 0.586319 CTTCGGCGTGTTGTCAATGT 59.414 50.000 6.85 0.00 0.00 2.71
1398 1442 1.743252 CCTTCACTGCTCCTTCGGC 60.743 63.158 0.00 0.00 0.00 5.54
2028 2262 1.820481 ACCGTTGGGTCGTGGTTTG 60.820 57.895 0.00 0.00 46.01 2.93
2075 2309 0.602905 CCCGTTGGACCAGACAAGTC 60.603 60.000 0.00 0.00 0.00 3.01
2113 2348 2.036733 CCGTTAACTCTGACAAGTGGGA 59.963 50.000 3.71 0.00 0.00 4.37
2308 2662 1.668151 GAGTGACTGACGGGTTGCC 60.668 63.158 0.00 0.00 0.00 4.52
2317 2671 6.316140 CGGGAAAATGAATTATGAGTGACTGA 59.684 38.462 0.00 0.00 0.00 3.41
2319 2673 5.066505 GCGGGAAAATGAATTATGAGTGACT 59.933 40.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.