Multiple sequence alignment - TraesCS5B01G223300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G223300 chr5B 100.000 3044 0 0 1 3044 397967646 397964603 0.000000e+00 5622.0
1 TraesCS5B01G223300 chr5B 86.874 579 71 5 1475 2052 398059696 398059122 0.000000e+00 643.0
2 TraesCS5B01G223300 chr5B 83.333 570 79 7 1475 2042 398064163 398063608 2.090000e-141 512.0
3 TraesCS5B01G223300 chr5D 90.158 1839 116 34 501 2283 339068457 339066628 0.000000e+00 2333.0
4 TraesCS5B01G223300 chr5D 82.837 705 95 14 1475 2170 339086495 339085808 2.600000e-170 608.0
5 TraesCS5B01G223300 chr5D 81.701 541 72 10 1475 2014 339092340 339091826 2.810000e-115 425.0
6 TraesCS5B01G223300 chr5D 89.124 331 34 2 132 461 339068784 339068455 7.850000e-111 411.0
7 TraesCS5B01G223300 chr5D 92.857 280 20 0 2296 2575 339066389 339066110 1.020000e-109 407.0
8 TraesCS5B01G223300 chr5A 93.633 1492 69 13 805 2283 439774054 439772576 0.000000e+00 2206.0
9 TraesCS5B01G223300 chr5A 83.112 752 89 22 1 743 439777785 439777063 0.000000e+00 651.0
10 TraesCS5B01G223300 chr5A 85.643 599 76 8 1475 2071 439825852 439825262 3.330000e-174 621.0
11 TraesCS5B01G223300 chr5A 82.777 569 84 5 1475 2042 439854688 439854133 2.110000e-136 496.0
12 TraesCS5B01G223300 chr5A 89.973 369 24 6 2296 2663 439772338 439771982 5.940000e-127 464.0
13 TraesCS5B01G223300 chr2A 83.831 402 53 5 1613 2014 236918916 236918527 3.710000e-99 372.0
14 TraesCS5B01G223300 chr4A 89.773 176 16 2 2781 2954 196608105 196608280 1.100000e-54 224.0
15 TraesCS5B01G223300 chr4A 97.753 89 2 0 2947 3035 196609107 196609195 1.460000e-33 154.0
16 TraesCS5B01G223300 chr1D 88.430 121 10 3 2927 3044 282948925 282949044 3.160000e-30 143.0
17 TraesCS5B01G223300 chr1B 87.097 124 9 4 2927 3044 384298714 384298836 1.900000e-27 134.0
18 TraesCS5B01G223300 chr1A 90.099 101 8 2 2945 3044 354938081 354938180 2.460000e-26 130.0
19 TraesCS5B01G223300 chrUn 77.987 159 26 8 588 743 50281690 50281842 1.160000e-14 91.6
20 TraesCS5B01G223300 chr6A 83.838 99 9 6 2786 2882 583718155 583718248 1.500000e-13 87.9
21 TraesCS5B01G223300 chr3A 81.308 107 18 2 636 742 677864927 677865031 5.410000e-13 86.1
22 TraesCS5B01G223300 chr2B 79.570 93 14 3 1683 1771 752395520 752395429 9.110000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G223300 chr5B 397964603 397967646 3043 True 5622.000000 5622 100.0000 1 3044 1 chr5B.!!$R1 3043
1 TraesCS5B01G223300 chr5B 398059122 398064163 5041 True 577.500000 643 85.1035 1475 2052 2 chr5B.!!$R2 577
2 TraesCS5B01G223300 chr5D 339066110 339068784 2674 True 1050.333333 2333 90.7130 132 2575 3 chr5D.!!$R3 2443
3 TraesCS5B01G223300 chr5D 339085808 339086495 687 True 608.000000 608 82.8370 1475 2170 1 chr5D.!!$R1 695
4 TraesCS5B01G223300 chr5D 339091826 339092340 514 True 425.000000 425 81.7010 1475 2014 1 chr5D.!!$R2 539
5 TraesCS5B01G223300 chr5A 439771982 439777785 5803 True 1107.000000 2206 88.9060 1 2663 3 chr5A.!!$R3 2662
6 TraesCS5B01G223300 chr5A 439825262 439825852 590 True 621.000000 621 85.6430 1475 2071 1 chr5A.!!$R1 596
7 TraesCS5B01G223300 chr5A 439854133 439854688 555 True 496.000000 496 82.7770 1475 2042 1 chr5A.!!$R2 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
726 738 0.179176 CAGTCTCTCGGAAGTGCTCG 60.179 60.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 5277 0.038526 AGTACCGTTGGTCTTGAGCG 60.039 55.0 0.0 0.0 37.09 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.713750 AGAGAAGATGCAATTTGAATATGTGG 58.286 34.615 0.00 0.00 0.00 4.17
76 77 8.931385 ATTTGATTTGTAAGATTGTACCATGC 57.069 30.769 0.00 0.00 0.00 4.06
222 227 5.234752 ACTAGTAATGTGAACGTGCAATCA 58.765 37.500 0.00 0.00 0.00 2.57
231 236 9.585099 AATGTGAACGTGCAATCATTAATATTT 57.415 25.926 9.96 0.00 0.00 1.40
352 360 4.970662 ATGCTGAACATGTTAATCGCTT 57.029 36.364 11.95 7.16 37.70 4.68
360 368 5.574891 ACATGTTAATCGCTTGCCATTTA 57.425 34.783 0.00 0.00 0.00 1.40
362 370 5.804979 ACATGTTAATCGCTTGCCATTTAAC 59.195 36.000 0.00 10.25 34.76 2.01
383 391 9.627123 TTTAACTAATCTAGGTCATTGGATTGG 57.373 33.333 0.00 0.00 34.42 3.16
392 400 3.381590 GGTCATTGGATTGGCCTAGTTTC 59.618 47.826 3.32 0.00 38.40 2.78
409 418 3.197766 AGTTTCATGGCCGAGATAGTTGA 59.802 43.478 0.00 0.00 0.00 3.18
429 438 5.612725 TGAATTTATCCATTTGGGCCTTC 57.387 39.130 4.53 0.00 36.21 3.46
439 448 5.070313 TCCATTTGGGCCTTCTTATATTTGC 59.930 40.000 4.53 0.00 36.21 3.68
540 549 4.213564 ACTCAGATGGTTAGGCTCTTTG 57.786 45.455 0.00 0.00 0.00 2.77
549 561 3.421844 GTTAGGCTCTTTGTGGTGGAAT 58.578 45.455 0.00 0.00 0.00 3.01
551 563 0.804989 GGCTCTTTGTGGTGGAATCG 59.195 55.000 0.00 0.00 0.00 3.34
561 573 1.526887 GTGGAATCGGCCCATCAGA 59.473 57.895 0.00 0.00 35.91 3.27
575 587 3.885297 CCCATCAGAGTTTTGACACTTGT 59.115 43.478 0.00 0.00 0.00 3.16
576 588 5.063204 CCCATCAGAGTTTTGACACTTGTA 58.937 41.667 0.00 0.00 0.00 2.41
578 590 5.760253 CCATCAGAGTTTTGACACTTGTAGT 59.240 40.000 0.00 0.00 0.00 2.73
579 591 6.073548 CCATCAGAGTTTTGACACTTGTAGTC 60.074 42.308 0.00 0.00 36.55 2.59
586 598 1.411246 TGACACTTGTAGTCGGTGCTT 59.589 47.619 0.00 0.00 38.83 3.91
597 609 3.146066 AGTCGGTGCTTGCATTTTTCTA 58.854 40.909 0.00 0.00 0.00 2.10
637 649 6.759356 TCTTTTCGGCGATATTCATTCAGTAA 59.241 34.615 11.76 0.00 0.00 2.24
639 651 6.912203 TTCGGCGATATTCATTCAGTAAAA 57.088 33.333 11.76 0.00 0.00 1.52
644 656 8.873830 CGGCGATATTCATTCAGTAAAAGATAT 58.126 33.333 0.00 0.00 0.00 1.63
662 674 5.802465 AGATATGTTCCCGTCGACTATAGA 58.198 41.667 14.70 1.83 0.00 1.98
673 685 3.620374 GTCGACTATAGAGGAACGTGTGA 59.380 47.826 8.70 0.00 0.00 3.58
687 699 3.390135 ACGTGTGATGACTTCGTCAATT 58.610 40.909 2.65 0.00 45.96 2.32
690 702 5.204833 CGTGTGATGACTTCGTCAATTTTT 58.795 37.500 2.65 0.00 45.96 1.94
726 738 0.179176 CAGTCTCTCGGAAGTGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
770 3750 4.737855 ATAAGTGTCTGCGTCCTTGTAT 57.262 40.909 0.00 0.00 0.00 2.29
773 3753 1.732259 GTGTCTGCGTCCTTGTATTGG 59.268 52.381 0.00 0.00 0.00 3.16
777 3757 2.159382 CTGCGTCCTTGTATTGGGTTT 58.841 47.619 0.00 0.00 0.00 3.27
781 3761 4.583489 TGCGTCCTTGTATTGGGTTTAAAA 59.417 37.500 0.00 0.00 0.00 1.52
782 3762 5.068723 TGCGTCCTTGTATTGGGTTTAAAAA 59.931 36.000 0.00 0.00 0.00 1.94
847 3827 6.074544 AGATAGGATTACTTTCTCGTTCCG 57.925 41.667 0.00 0.00 32.89 4.30
866 3846 7.013529 CGTTCCGAAAAGTAAAGGATAACAAG 58.986 38.462 0.00 0.00 32.19 3.16
867 3847 7.307573 CGTTCCGAAAAGTAAAGGATAACAAGT 60.308 37.037 0.00 0.00 32.19 3.16
869 3849 9.558396 TTCCGAAAAGTAAAGGATAACAAGTTA 57.442 29.630 0.00 0.00 32.19 2.24
870 3850 9.211485 TCCGAAAAGTAAAGGATAACAAGTTAG 57.789 33.333 0.00 0.00 0.00 2.34
871 3851 8.448615 CCGAAAAGTAAAGGATAACAAGTTAGG 58.551 37.037 0.00 0.00 0.00 2.69
885 3867 5.990668 ACAAGTTAGGATTTTCGCTAGGAT 58.009 37.500 0.00 0.00 0.00 3.24
1016 3998 1.755783 GGATGGGAAGCAAGGCAGG 60.756 63.158 0.00 0.00 0.00 4.85
1260 4242 1.425031 CGGAACCGACGTCGACATA 59.575 57.895 37.65 0.00 43.02 2.29
1422 4404 1.138661 TGGAGAAAACCACGTAACGGT 59.861 47.619 0.00 0.00 38.85 4.83
1781 4775 2.951745 GCTGCTGATCGACGACGG 60.952 66.667 7.55 0.67 40.21 4.79
2014 5008 2.165167 AGATGTACGTCGAAAGGGTGA 58.835 47.619 9.41 0.00 0.00 4.02
2046 5044 4.621510 CAGTTCATGAGCTGCAGGTAACTA 60.622 45.833 24.12 11.39 37.81 2.24
2068 5069 1.949799 ACTGCTCCACCTGAATCTCT 58.050 50.000 0.00 0.00 0.00 3.10
2070 5071 2.235898 ACTGCTCCACCTGAATCTCTTC 59.764 50.000 0.00 0.00 0.00 2.87
2078 5079 3.433615 CACCTGAATCTCTTCCGAACAAC 59.566 47.826 0.00 0.00 0.00 3.32
2088 5089 5.049954 TCTCTTCCGAACAACAAAATTACGG 60.050 40.000 0.00 0.00 40.16 4.02
2091 5092 3.250521 TCCGAACAACAAAATTACGGACC 59.749 43.478 0.00 0.00 42.14 4.46
2094 5095 4.907582 CGAACAACAAAATTACGGACCTTC 59.092 41.667 0.00 0.00 0.00 3.46
2103 5106 0.682292 TACGGACCTTCATGTGCACA 59.318 50.000 24.08 24.08 0.00 4.57
2119 5122 1.993370 GCACAGAGTACAAACTAGGCG 59.007 52.381 0.00 0.00 35.56 5.52
2120 5123 1.993370 CACAGAGTACAAACTAGGCGC 59.007 52.381 0.00 0.00 35.56 6.53
2126 5135 1.794116 GTACAAACTAGGCGCGTTTCA 59.206 47.619 8.36 0.00 32.64 2.69
2145 5158 3.503363 GTGATCTGCAGGTGCGGC 61.503 66.667 15.13 0.00 46.62 6.53
2161 5174 1.888436 CGGCCACTCCTTCTGCTACA 61.888 60.000 2.24 0.00 0.00 2.74
2189 5202 2.262915 CTCCACGAGGACTGGTGC 59.737 66.667 8.71 0.00 39.61 5.01
2215 5228 3.788817 GCAACCGCATGCGTACTA 58.211 55.556 35.55 0.00 36.45 1.82
2224 5249 2.782192 CGCATGCGTACTACTTACTGAC 59.218 50.000 31.33 0.00 34.35 3.51
2260 5285 0.098905 CCGAAGATCGACGCTCAAGA 59.901 55.000 1.08 0.00 43.74 3.02
2262 5287 1.551145 GAAGATCGACGCTCAAGACC 58.449 55.000 1.08 0.00 0.00 3.85
2283 5309 0.908180 ACGGTACTTGAGGGGAAGGG 60.908 60.000 0.00 0.00 0.00 3.95
2284 5310 0.908180 CGGTACTTGAGGGGAAGGGT 60.908 60.000 0.00 0.00 0.00 4.34
2285 5311 0.618981 GGTACTTGAGGGGAAGGGTG 59.381 60.000 0.00 0.00 0.00 4.61
2291 5317 1.652947 TGAGGGGAAGGGTGTTACTC 58.347 55.000 0.00 0.00 0.00 2.59
2292 5318 1.151413 TGAGGGGAAGGGTGTTACTCT 59.849 52.381 0.00 0.00 0.00 3.24
2293 5319 1.832366 GAGGGGAAGGGTGTTACTCTC 59.168 57.143 0.00 0.00 0.00 3.20
2296 5322 1.975680 GGGAAGGGTGTTACTCTCACA 59.024 52.381 0.00 0.00 37.52 3.58
2297 5323 2.028020 GGGAAGGGTGTTACTCTCACAG 60.028 54.545 0.00 0.00 37.52 3.66
2298 5324 2.897969 GGAAGGGTGTTACTCTCACAGA 59.102 50.000 0.00 0.00 37.52 3.41
2302 5328 2.093447 GGGTGTTACTCTCACAGATGGG 60.093 54.545 0.00 0.00 37.52 4.00
2471 5725 3.564511 CAATGAACTAGGTGCAAAACGG 58.435 45.455 0.00 0.00 0.00 4.44
2477 5731 4.230745 ACTAGGTGCAAAACGGGAATAT 57.769 40.909 0.00 0.00 0.00 1.28
2529 5783 6.564328 AGTTTCCTTTTAAGCAAGTGTTCAG 58.436 36.000 0.00 0.00 0.00 3.02
2534 5788 5.049405 CCTTTTAAGCAAGTGTTCAGATCGT 60.049 40.000 0.00 0.00 0.00 3.73
2577 5831 5.695851 TTCTTTGCAAGGAGAGCTTTTAG 57.304 39.130 11.40 0.00 0.00 1.85
2592 5846 8.854614 AGAGCTTTTAGAAAACAGATGTATGT 57.145 30.769 0.00 0.00 33.96 2.29
2620 5874 3.393609 ACACATCCATAGAGCCATGTGAT 59.606 43.478 15.87 0.56 46.08 3.06
2626 5880 3.244805 CCATAGAGCCATGTGATGTGGAT 60.245 47.826 0.00 0.00 39.12 3.41
2641 5895 2.749076 TGTGGATGTTTGCTACTCATGC 59.251 45.455 0.00 0.00 0.00 4.06
2643 5897 3.191162 GTGGATGTTTGCTACTCATGCAA 59.809 43.478 0.00 0.00 46.90 4.08
2673 5927 9.121658 TGTAACAAACATGTTAGTTGATAACCA 57.878 29.630 12.39 0.00 37.06 3.67
2674 5928 9.607285 GTAACAAACATGTTAGTTGATAACCAG 57.393 33.333 12.39 0.00 42.74 4.00
2675 5929 8.458573 AACAAACATGTTAGTTGATAACCAGA 57.541 30.769 12.39 0.00 42.74 3.86
2676 5930 7.871853 ACAAACATGTTAGTTGATAACCAGAC 58.128 34.615 12.39 0.00 42.74 3.51
2677 5931 7.500892 ACAAACATGTTAGTTGATAACCAGACA 59.499 33.333 12.39 0.00 42.74 3.41
2678 5932 7.672983 AACATGTTAGTTGATAACCAGACAG 57.327 36.000 9.97 0.00 42.74 3.51
2679 5933 7.004555 ACATGTTAGTTGATAACCAGACAGA 57.995 36.000 0.00 0.00 42.74 3.41
2680 5934 7.099764 ACATGTTAGTTGATAACCAGACAGAG 58.900 38.462 0.00 0.00 42.74 3.35
2681 5935 5.479306 TGTTAGTTGATAACCAGACAGAGC 58.521 41.667 0.00 0.00 42.74 4.09
2682 5936 5.246203 TGTTAGTTGATAACCAGACAGAGCT 59.754 40.000 0.00 0.00 42.74 4.09
2683 5937 6.436218 TGTTAGTTGATAACCAGACAGAGCTA 59.564 38.462 0.00 0.00 42.74 3.32
2684 5938 5.331876 AGTTGATAACCAGACAGAGCTAC 57.668 43.478 0.00 0.00 0.00 3.58
2685 5939 4.772624 AGTTGATAACCAGACAGAGCTACA 59.227 41.667 0.00 0.00 0.00 2.74
2686 5940 5.246203 AGTTGATAACCAGACAGAGCTACAA 59.754 40.000 0.00 0.00 0.00 2.41
2687 5941 5.939764 TGATAACCAGACAGAGCTACAAT 57.060 39.130 0.00 0.00 0.00 2.71
2688 5942 7.124298 AGTTGATAACCAGACAGAGCTACAATA 59.876 37.037 0.00 0.00 0.00 1.90
2689 5943 7.043961 TGATAACCAGACAGAGCTACAATAG 57.956 40.000 0.00 0.00 0.00 1.73
2709 5963 9.154847 ACAATAGCAAAAGAGAAATAAAATGCC 57.845 29.630 0.00 0.00 33.19 4.40
2710 5964 9.374838 CAATAGCAAAAGAGAAATAAAATGCCT 57.625 29.630 0.00 0.00 33.19 4.75
2711 5965 9.948964 AATAGCAAAAGAGAAATAAAATGCCTT 57.051 25.926 0.00 0.00 33.19 4.35
2712 5966 7.895975 AGCAAAAGAGAAATAAAATGCCTTC 57.104 32.000 0.00 0.00 33.19 3.46
2713 5967 7.444299 AGCAAAAGAGAAATAAAATGCCTTCA 58.556 30.769 0.00 0.00 33.19 3.02
2714 5968 8.098912 AGCAAAAGAGAAATAAAATGCCTTCAT 58.901 29.630 0.00 0.00 33.19 2.57
2715 5969 9.369904 GCAAAAGAGAAATAAAATGCCTTCATA 57.630 29.630 0.00 0.00 31.46 2.15
2718 5972 9.591792 AAAGAGAAATAAAATGCCTTCATAAGC 57.408 29.630 0.00 0.00 31.46 3.09
2719 5973 8.297470 AGAGAAATAAAATGCCTTCATAAGCA 57.703 30.769 0.00 0.00 44.45 3.91
2731 5985 5.571784 CTTCATAAGCATTGAAGGCAAGA 57.428 39.130 4.17 0.00 44.06 3.02
2732 5986 6.145338 CTTCATAAGCATTGAAGGCAAGAT 57.855 37.500 4.17 0.00 44.06 2.40
2733 5987 7.268199 CTTCATAAGCATTGAAGGCAAGATA 57.732 36.000 4.17 0.00 44.06 1.98
2734 5988 7.828508 TTCATAAGCATTGAAGGCAAGATAT 57.171 32.000 4.17 0.00 37.45 1.63
2735 5989 7.828508 TCATAAGCATTGAAGGCAAGATATT 57.171 32.000 4.17 0.00 37.45 1.28
2736 5990 7.654568 TCATAAGCATTGAAGGCAAGATATTG 58.345 34.615 4.17 0.00 37.45 1.90
2737 5991 4.317671 AGCATTGAAGGCAAGATATTGC 57.682 40.909 16.69 16.69 46.64 3.56
2748 6002 5.252969 GCAAGATATTGCAACATCCAAGA 57.747 39.130 19.79 0.00 46.60 3.02
2749 6003 5.653507 GCAAGATATTGCAACATCCAAGAA 58.346 37.500 19.79 0.00 46.60 2.52
2750 6004 6.101332 GCAAGATATTGCAACATCCAAGAAA 58.899 36.000 19.79 0.00 46.60 2.52
2751 6005 6.255020 GCAAGATATTGCAACATCCAAGAAAG 59.745 38.462 19.79 0.00 46.60 2.62
2752 6006 5.899299 AGATATTGCAACATCCAAGAAAGC 58.101 37.500 14.02 0.00 0.00 3.51
2753 6007 5.419788 AGATATTGCAACATCCAAGAAAGCA 59.580 36.000 14.02 0.00 0.00 3.91
2754 6008 4.546829 ATTGCAACATCCAAGAAAGCAT 57.453 36.364 0.00 0.00 0.00 3.79
2755 6009 4.339872 TTGCAACATCCAAGAAAGCATT 57.660 36.364 0.00 0.00 0.00 3.56
2756 6010 3.655486 TGCAACATCCAAGAAAGCATTG 58.345 40.909 0.00 0.00 0.00 2.82
2757 6011 3.069872 TGCAACATCCAAGAAAGCATTGT 59.930 39.130 0.00 0.00 0.00 2.71
2758 6012 4.280425 TGCAACATCCAAGAAAGCATTGTA 59.720 37.500 0.00 0.00 0.00 2.41
2759 6013 4.622740 GCAACATCCAAGAAAGCATTGTAC 59.377 41.667 0.00 0.00 0.00 2.90
2760 6014 5.771469 CAACATCCAAGAAAGCATTGTACA 58.229 37.500 0.00 0.00 0.00 2.90
2761 6015 6.215121 CAACATCCAAGAAAGCATTGTACAA 58.785 36.000 11.41 11.41 0.00 2.41
2762 6016 5.772521 ACATCCAAGAAAGCATTGTACAAC 58.227 37.500 11.22 0.00 0.00 3.32
2763 6017 5.301551 ACATCCAAGAAAGCATTGTACAACA 59.698 36.000 11.22 0.00 0.00 3.33
2764 6018 5.181690 TCCAAGAAAGCATTGTACAACAC 57.818 39.130 11.22 6.00 0.00 3.32
2765 6019 4.887071 TCCAAGAAAGCATTGTACAACACT 59.113 37.500 11.22 8.41 0.00 3.55
2766 6020 6.058833 TCCAAGAAAGCATTGTACAACACTA 58.941 36.000 11.22 0.00 0.00 2.74
2767 6021 6.544197 TCCAAGAAAGCATTGTACAACACTAA 59.456 34.615 11.22 0.00 0.00 2.24
2768 6022 7.067615 TCCAAGAAAGCATTGTACAACACTAAA 59.932 33.333 11.22 0.00 0.00 1.85
2769 6023 7.867403 CCAAGAAAGCATTGTACAACACTAAAT 59.133 33.333 11.22 1.97 0.00 1.40
2770 6024 8.693504 CAAGAAAGCATTGTACAACACTAAATG 58.306 33.333 11.22 4.59 0.00 2.32
2771 6025 7.940850 AGAAAGCATTGTACAACACTAAATGT 58.059 30.769 11.22 0.00 46.42 2.71
2772 6026 9.062524 AGAAAGCATTGTACAACACTAAATGTA 57.937 29.630 11.22 0.00 42.31 2.29
2784 6038 9.367444 ACAACACTAAATGTACACTATTCTAGC 57.633 33.333 0.00 0.00 42.31 3.42
2785 6039 9.366216 CAACACTAAATGTACACTATTCTAGCA 57.634 33.333 0.00 0.00 42.31 3.49
2786 6040 9.938280 AACACTAAATGTACACTATTCTAGCAA 57.062 29.630 0.00 0.00 42.31 3.91
2787 6041 9.367444 ACACTAAATGTACACTATTCTAGCAAC 57.633 33.333 0.00 0.00 40.88 4.17
2788 6042 9.587772 CACTAAATGTACACTATTCTAGCAACT 57.412 33.333 0.00 0.00 0.00 3.16
2792 6046 9.587772 AAATGTACACTATTCTAGCAACTAGTG 57.412 33.333 0.00 14.20 44.18 2.74
2793 6047 7.096884 TGTACACTATTCTAGCAACTAGTGG 57.903 40.000 17.47 0.00 43.35 4.00
2794 6048 6.662234 TGTACACTATTCTAGCAACTAGTGGT 59.338 38.462 17.47 0.00 43.35 4.16
2795 6049 6.607004 ACACTATTCTAGCAACTAGTGGTT 57.393 37.500 17.47 0.00 43.35 3.67
2802 6056 2.033602 AACTAGTGGTTGGGGCGC 59.966 61.111 0.00 0.00 36.70 6.53
2803 6057 2.824880 AACTAGTGGTTGGGGCGCA 61.825 57.895 10.83 0.00 36.70 6.09
2804 6058 2.746277 CTAGTGGTTGGGGCGCAC 60.746 66.667 10.83 4.83 0.00 5.34
2805 6059 4.338710 TAGTGGTTGGGGCGCACC 62.339 66.667 25.59 25.59 39.11 5.01
2823 6077 4.760047 ACTGGTGCGCCGCCTAAG 62.760 66.667 12.58 5.37 37.67 2.18
2834 6088 2.868253 CGCCTAAGGGGAAGTTTGG 58.132 57.895 0.00 0.00 37.91 3.28
2835 6089 0.679960 CGCCTAAGGGGAAGTTTGGG 60.680 60.000 0.00 0.00 37.91 4.12
2836 6090 0.970937 GCCTAAGGGGAAGTTTGGGC 60.971 60.000 0.00 0.00 42.46 5.36
2837 6091 0.679960 CCTAAGGGGAAGTTTGGGCG 60.680 60.000 0.00 0.00 37.23 6.13
2838 6092 0.679960 CTAAGGGGAAGTTTGGGCGG 60.680 60.000 0.00 0.00 0.00 6.13
2839 6093 1.428718 TAAGGGGAAGTTTGGGCGGT 61.429 55.000 0.00 0.00 0.00 5.68
2840 6094 2.989253 GGGGAAGTTTGGGCGGTG 60.989 66.667 0.00 0.00 0.00 4.94
2841 6095 3.680786 GGGAAGTTTGGGCGGTGC 61.681 66.667 0.00 0.00 0.00 5.01
2842 6096 4.038080 GGAAGTTTGGGCGGTGCG 62.038 66.667 0.00 0.00 0.00 5.34
2843 6097 2.975799 GAAGTTTGGGCGGTGCGA 60.976 61.111 0.00 0.00 0.00 5.10
2844 6098 2.966309 GAAGTTTGGGCGGTGCGAG 61.966 63.158 0.00 0.00 0.00 5.03
2851 6105 4.148825 GGCGGTGCGAGGTGAGAT 62.149 66.667 0.00 0.00 0.00 2.75
2852 6106 2.887568 GCGGTGCGAGGTGAGATG 60.888 66.667 0.00 0.00 0.00 2.90
2853 6107 2.887568 CGGTGCGAGGTGAGATGC 60.888 66.667 0.00 0.00 0.00 3.91
2854 6108 2.887568 GGTGCGAGGTGAGATGCG 60.888 66.667 0.00 0.00 0.00 4.73
2861 6115 2.514824 GGTGAGATGCGCCCCTTC 60.515 66.667 4.18 0.00 41.49 3.46
2862 6116 2.514824 GTGAGATGCGCCCCTTCC 60.515 66.667 4.18 0.00 0.00 3.46
2863 6117 3.008517 TGAGATGCGCCCCTTCCA 61.009 61.111 4.18 0.00 0.00 3.53
2864 6118 2.514824 GAGATGCGCCCCTTCCAC 60.515 66.667 4.18 0.00 0.00 4.02
2865 6119 3.011517 AGATGCGCCCCTTCCACT 61.012 61.111 4.18 0.00 0.00 4.00
2866 6120 1.686325 GAGATGCGCCCCTTCCACTA 61.686 60.000 4.18 0.00 0.00 2.74
2867 6121 1.056700 AGATGCGCCCCTTCCACTAT 61.057 55.000 4.18 0.00 0.00 2.12
2868 6122 0.603975 GATGCGCCCCTTCCACTATC 60.604 60.000 4.18 0.00 0.00 2.08
2869 6123 2.056906 ATGCGCCCCTTCCACTATCC 62.057 60.000 4.18 0.00 0.00 2.59
2870 6124 2.444256 GCGCCCCTTCCACTATCCT 61.444 63.158 0.00 0.00 0.00 3.24
2871 6125 1.749033 CGCCCCTTCCACTATCCTC 59.251 63.158 0.00 0.00 0.00 3.71
2872 6126 0.760945 CGCCCCTTCCACTATCCTCT 60.761 60.000 0.00 0.00 0.00 3.69
2873 6127 1.512735 GCCCCTTCCACTATCCTCTT 58.487 55.000 0.00 0.00 0.00 2.85
2874 6128 1.847088 GCCCCTTCCACTATCCTCTTT 59.153 52.381 0.00 0.00 0.00 2.52
2875 6129 3.046374 GCCCCTTCCACTATCCTCTTTA 58.954 50.000 0.00 0.00 0.00 1.85
2876 6130 3.653352 GCCCCTTCCACTATCCTCTTTAT 59.347 47.826 0.00 0.00 0.00 1.40
2877 6131 4.844655 GCCCCTTCCACTATCCTCTTTATA 59.155 45.833 0.00 0.00 0.00 0.98
2878 6132 5.489278 GCCCCTTCCACTATCCTCTTTATAT 59.511 44.000 0.00 0.00 0.00 0.86
2879 6133 6.672657 GCCCCTTCCACTATCCTCTTTATATA 59.327 42.308 0.00 0.00 0.00 0.86
2880 6134 7.348537 GCCCCTTCCACTATCCTCTTTATATAT 59.651 40.741 0.00 0.00 0.00 0.86
2881 6135 8.709308 CCCCTTCCACTATCCTCTTTATATATG 58.291 40.741 0.00 0.00 0.00 1.78
2882 6136 8.207545 CCCTTCCACTATCCTCTTTATATATGC 58.792 40.741 0.00 0.00 0.00 3.14
2883 6137 8.762645 CCTTCCACTATCCTCTTTATATATGCA 58.237 37.037 0.00 0.00 0.00 3.96
2884 6138 9.593134 CTTCCACTATCCTCTTTATATATGCAC 57.407 37.037 0.00 0.00 0.00 4.57
2885 6139 8.901472 TCCACTATCCTCTTTATATATGCACT 57.099 34.615 0.00 0.00 0.00 4.40
2886 6140 9.990868 TCCACTATCCTCTTTATATATGCACTA 57.009 33.333 0.00 0.00 0.00 2.74
2893 6147 9.760926 TCCTCTTTATATATGCACTATCACTCT 57.239 33.333 0.00 0.00 0.00 3.24
2905 6159 8.706322 TGCACTATCACTCTTTATACTATCCA 57.294 34.615 0.00 0.00 0.00 3.41
2906 6160 9.314133 TGCACTATCACTCTTTATACTATCCAT 57.686 33.333 0.00 0.00 0.00 3.41
2907 6161 9.579768 GCACTATCACTCTTTATACTATCCATG 57.420 37.037 0.00 0.00 0.00 3.66
2909 6163 8.754080 ACTATCACTCTTTATACTATCCATGGC 58.246 37.037 6.96 0.00 0.00 4.40
2910 6164 6.360370 TCACTCTTTATACTATCCATGGCC 57.640 41.667 6.96 0.00 0.00 5.36
2911 6165 5.843969 TCACTCTTTATACTATCCATGGCCA 59.156 40.000 8.56 8.56 0.00 5.36
2912 6166 6.501805 TCACTCTTTATACTATCCATGGCCAT 59.498 38.462 14.09 14.09 0.00 4.40
2913 6167 7.017551 TCACTCTTTATACTATCCATGGCCATT 59.982 37.037 17.92 4.22 0.00 3.16
2914 6168 7.120285 CACTCTTTATACTATCCATGGCCATTG 59.880 40.741 17.92 13.90 0.00 2.82
2915 6169 7.090319 TCTTTATACTATCCATGGCCATTGT 57.910 36.000 17.92 12.24 0.00 2.71
2916 6170 7.168219 TCTTTATACTATCCATGGCCATTGTC 58.832 38.462 17.92 0.00 0.00 3.18
2917 6171 4.999469 ATACTATCCATGGCCATTGTCA 57.001 40.909 17.92 4.27 0.00 3.58
2918 6172 3.889859 ACTATCCATGGCCATTGTCAT 57.110 42.857 17.92 5.86 37.26 3.06
2919 6173 4.999469 ACTATCCATGGCCATTGTCATA 57.001 40.909 17.92 6.76 33.57 2.15
2920 6174 5.525454 ACTATCCATGGCCATTGTCATAT 57.475 39.130 17.92 4.71 33.57 1.78
2921 6175 5.895807 ACTATCCATGGCCATTGTCATATT 58.104 37.500 17.92 0.00 33.57 1.28
2922 6176 6.317312 ACTATCCATGGCCATTGTCATATTT 58.683 36.000 17.92 0.00 33.57 1.40
2923 6177 4.940905 TCCATGGCCATTGTCATATTTG 57.059 40.909 17.92 1.45 33.57 2.32
2924 6178 4.288398 TCCATGGCCATTGTCATATTTGT 58.712 39.130 17.92 0.00 33.57 2.83
2925 6179 4.715792 TCCATGGCCATTGTCATATTTGTT 59.284 37.500 17.92 0.00 33.57 2.83
2926 6180 5.051816 CCATGGCCATTGTCATATTTGTTC 58.948 41.667 17.92 0.00 33.57 3.18
2927 6181 5.163385 CCATGGCCATTGTCATATTTGTTCT 60.163 40.000 17.92 0.00 33.57 3.01
2928 6182 5.581126 TGGCCATTGTCATATTTGTTCTC 57.419 39.130 0.00 0.00 0.00 2.87
2929 6183 4.402155 TGGCCATTGTCATATTTGTTCTCC 59.598 41.667 0.00 0.00 0.00 3.71
2930 6184 4.402155 GGCCATTGTCATATTTGTTCTCCA 59.598 41.667 0.00 0.00 0.00 3.86
2931 6185 5.343249 GCCATTGTCATATTTGTTCTCCAC 58.657 41.667 0.00 0.00 0.00 4.02
2932 6186 5.679638 GCCATTGTCATATTTGTTCTCCACC 60.680 44.000 0.00 0.00 0.00 4.61
2933 6187 5.418524 CCATTGTCATATTTGTTCTCCACCA 59.581 40.000 0.00 0.00 0.00 4.17
2934 6188 6.071447 CCATTGTCATATTTGTTCTCCACCAA 60.071 38.462 0.00 0.00 0.00 3.67
2935 6189 5.957842 TGTCATATTTGTTCTCCACCAAC 57.042 39.130 0.00 0.00 0.00 3.77
2936 6190 5.380900 TGTCATATTTGTTCTCCACCAACA 58.619 37.500 0.00 0.00 31.76 3.33
2937 6191 5.830457 TGTCATATTTGTTCTCCACCAACAA 59.170 36.000 0.00 0.00 41.05 2.83
2942 6196 4.873746 TTGTTCTCCACCAACAAAAACA 57.126 36.364 0.00 0.00 40.08 2.83
2943 6197 4.181309 TGTTCTCCACCAACAAAAACAC 57.819 40.909 0.00 0.00 30.67 3.32
2944 6198 3.574396 TGTTCTCCACCAACAAAAACACA 59.426 39.130 0.00 0.00 30.67 3.72
2945 6199 4.039245 TGTTCTCCACCAACAAAAACACAA 59.961 37.500 0.00 0.00 30.67 3.33
2946 6200 5.175127 GTTCTCCACCAACAAAAACACAAT 58.825 37.500 0.00 0.00 0.00 2.71
2947 6201 6.071334 TGTTCTCCACCAACAAAAACACAATA 60.071 34.615 0.00 0.00 30.67 1.90
2948 6202 6.531503 TCTCCACCAACAAAAACACAATAA 57.468 33.333 0.00 0.00 0.00 1.40
2949 6203 7.118496 TCTCCACCAACAAAAACACAATAAT 57.882 32.000 0.00 0.00 0.00 1.28
2950 6204 8.239038 TCTCCACCAACAAAAACACAATAATA 57.761 30.769 0.00 0.00 0.00 0.98
2951 6205 8.138712 TCTCCACCAACAAAAACACAATAATAC 58.861 33.333 0.00 0.00 0.00 1.89
2952 6206 7.782049 TCCACCAACAAAAACACAATAATACA 58.218 30.769 0.00 0.00 0.00 2.29
2953 6207 8.258007 TCCACCAACAAAAACACAATAATACAA 58.742 29.630 0.00 0.00 0.00 2.41
2954 6208 8.883731 CCACCAACAAAAACACAATAATACAAA 58.116 29.630 0.00 0.00 0.00 2.83
2955 6209 9.913451 CACCAACAAAAACACAATAATACAAAG 57.087 29.630 0.00 0.00 0.00 2.77
2956 6210 9.103861 ACCAACAAAAACACAATAATACAAAGG 57.896 29.630 0.00 0.00 0.00 3.11
2957 6211 8.067189 CCAACAAAAACACAATAATACAAAGGC 58.933 33.333 0.00 0.00 0.00 4.35
2958 6212 8.825745 CAACAAAAACACAATAATACAAAGGCT 58.174 29.630 0.00 0.00 0.00 4.58
2959 6213 8.956533 ACAAAAACACAATAATACAAAGGCTT 57.043 26.923 0.00 0.00 0.00 4.35
2960 6214 8.825745 ACAAAAACACAATAATACAAAGGCTTG 58.174 29.630 0.00 0.00 38.61 4.01
2961 6215 7.961325 AAAACACAATAATACAAAGGCTTGG 57.039 32.000 0.00 0.00 36.82 3.61
2962 6216 5.072040 ACACAATAATACAAAGGCTTGGC 57.928 39.130 0.00 0.00 36.82 4.52
2963 6217 4.772100 ACACAATAATACAAAGGCTTGGCT 59.228 37.500 0.00 0.00 36.82 4.75
2964 6218 5.105756 ACACAATAATACAAAGGCTTGGCTC 60.106 40.000 0.00 0.00 36.82 4.70
2965 6219 5.016173 ACAATAATACAAAGGCTTGGCTCA 58.984 37.500 0.00 0.00 36.82 4.26
2966 6220 5.126061 ACAATAATACAAAGGCTTGGCTCAG 59.874 40.000 0.00 0.00 36.82 3.35
2967 6221 1.467920 ATACAAAGGCTTGGCTCAGC 58.532 50.000 0.00 0.00 36.82 4.26
2968 6222 0.401738 TACAAAGGCTTGGCTCAGCT 59.598 50.000 0.00 0.00 39.97 4.24
2969 6223 0.401738 ACAAAGGCTTGGCTCAGCTA 59.598 50.000 0.00 0.00 39.97 3.32
2970 6224 1.202927 ACAAAGGCTTGGCTCAGCTAA 60.203 47.619 0.00 0.00 39.97 3.09
2971 6225 1.200948 CAAAGGCTTGGCTCAGCTAAC 59.799 52.381 0.00 0.00 39.97 2.34
2972 6226 0.695347 AAGGCTTGGCTCAGCTAACT 59.305 50.000 0.00 0.00 39.97 2.24
2973 6227 0.251634 AGGCTTGGCTCAGCTAACTC 59.748 55.000 0.00 0.00 39.97 3.01
2974 6228 0.036010 GGCTTGGCTCAGCTAACTCA 60.036 55.000 0.00 0.00 39.97 3.41
2975 6229 1.082690 GCTTGGCTCAGCTAACTCAC 58.917 55.000 0.00 0.00 36.79 3.51
2976 6230 1.731720 CTTGGCTCAGCTAACTCACC 58.268 55.000 0.00 0.00 0.00 4.02
2977 6231 0.324943 TTGGCTCAGCTAACTCACCC 59.675 55.000 0.00 0.00 0.00 4.61
2978 6232 0.835971 TGGCTCAGCTAACTCACCCA 60.836 55.000 0.00 0.00 0.00 4.51
2979 6233 0.391793 GGCTCAGCTAACTCACCCAC 60.392 60.000 0.00 0.00 0.00 4.61
2980 6234 0.610687 GCTCAGCTAACTCACCCACT 59.389 55.000 0.00 0.00 0.00 4.00
2981 6235 1.002544 GCTCAGCTAACTCACCCACTT 59.997 52.381 0.00 0.00 0.00 3.16
2982 6236 2.233922 GCTCAGCTAACTCACCCACTTA 59.766 50.000 0.00 0.00 0.00 2.24
2983 6237 3.306780 GCTCAGCTAACTCACCCACTTAA 60.307 47.826 0.00 0.00 0.00 1.85
2984 6238 4.246458 CTCAGCTAACTCACCCACTTAAC 58.754 47.826 0.00 0.00 0.00 2.01
2985 6239 3.901844 TCAGCTAACTCACCCACTTAACT 59.098 43.478 0.00 0.00 0.00 2.24
2986 6240 4.021368 TCAGCTAACTCACCCACTTAACTC 60.021 45.833 0.00 0.00 0.00 3.01
2987 6241 3.056749 AGCTAACTCACCCACTTAACTCG 60.057 47.826 0.00 0.00 0.00 4.18
2988 6242 2.165319 AACTCACCCACTTAACTCGC 57.835 50.000 0.00 0.00 0.00 5.03
2989 6243 1.045407 ACTCACCCACTTAACTCGCA 58.955 50.000 0.00 0.00 0.00 5.10
2990 6244 1.270147 ACTCACCCACTTAACTCGCAC 60.270 52.381 0.00 0.00 0.00 5.34
2991 6245 0.753867 TCACCCACTTAACTCGCACA 59.246 50.000 0.00 0.00 0.00 4.57
2992 6246 1.139256 TCACCCACTTAACTCGCACAA 59.861 47.619 0.00 0.00 0.00 3.33
2993 6247 1.531149 CACCCACTTAACTCGCACAAG 59.469 52.381 0.00 0.00 0.00 3.16
2994 6248 0.517316 CCCACTTAACTCGCACAAGC 59.483 55.000 0.00 0.00 37.42 4.01
2995 6249 1.225855 CCACTTAACTCGCACAAGCA 58.774 50.000 0.00 0.00 42.27 3.91
2996 6250 1.806542 CCACTTAACTCGCACAAGCAT 59.193 47.619 0.00 0.00 42.27 3.79
2997 6251 2.159653 CCACTTAACTCGCACAAGCATC 60.160 50.000 0.00 0.00 42.27 3.91
2998 6252 2.480037 CACTTAACTCGCACAAGCATCA 59.520 45.455 0.00 0.00 42.27 3.07
2999 6253 2.480419 ACTTAACTCGCACAAGCATCAC 59.520 45.455 0.00 0.00 42.27 3.06
3000 6254 2.162319 TAACTCGCACAAGCATCACA 57.838 45.000 0.00 0.00 42.27 3.58
3001 6255 1.527034 AACTCGCACAAGCATCACAT 58.473 45.000 0.00 0.00 42.27 3.21
3002 6256 1.527034 ACTCGCACAAGCATCACATT 58.473 45.000 0.00 0.00 42.27 2.71
3003 6257 1.466167 ACTCGCACAAGCATCACATTC 59.534 47.619 0.00 0.00 42.27 2.67
3004 6258 0.804364 TCGCACAAGCATCACATTCC 59.196 50.000 0.00 0.00 42.27 3.01
3005 6259 0.522626 CGCACAAGCATCACATTCCA 59.477 50.000 0.00 0.00 42.27 3.53
3006 6260 1.133598 CGCACAAGCATCACATTCCAT 59.866 47.619 0.00 0.00 42.27 3.41
3007 6261 2.536365 GCACAAGCATCACATTCCATG 58.464 47.619 0.00 0.00 41.58 3.66
3008 6262 2.164827 GCACAAGCATCACATTCCATGA 59.835 45.455 0.00 0.00 41.58 3.07
3009 6263 3.766151 CACAAGCATCACATTCCATGAC 58.234 45.455 0.00 0.00 0.00 3.06
3010 6264 3.191791 CACAAGCATCACATTCCATGACA 59.808 43.478 0.00 0.00 0.00 3.58
3011 6265 3.192001 ACAAGCATCACATTCCATGACAC 59.808 43.478 0.00 0.00 0.00 3.67
3012 6266 3.076079 AGCATCACATTCCATGACACA 57.924 42.857 0.00 0.00 0.00 3.72
3013 6267 3.423749 AGCATCACATTCCATGACACAA 58.576 40.909 0.00 0.00 0.00 3.33
3014 6268 3.442625 AGCATCACATTCCATGACACAAG 59.557 43.478 0.00 0.00 0.00 3.16
3015 6269 3.766151 CATCACATTCCATGACACAAGC 58.234 45.455 0.00 0.00 0.00 4.01
3016 6270 2.861274 TCACATTCCATGACACAAGCA 58.139 42.857 0.00 0.00 0.00 3.91
3017 6271 2.553602 TCACATTCCATGACACAAGCAC 59.446 45.455 0.00 0.00 0.00 4.40
3018 6272 2.293955 CACATTCCATGACACAAGCACA 59.706 45.455 0.00 0.00 0.00 4.57
3019 6273 2.957680 ACATTCCATGACACAAGCACAA 59.042 40.909 0.00 0.00 0.00 3.33
3020 6274 3.243501 ACATTCCATGACACAAGCACAAC 60.244 43.478 0.00 0.00 0.00 3.32
3021 6275 2.346766 TCCATGACACAAGCACAACT 57.653 45.000 0.00 0.00 0.00 3.16
3022 6276 3.483808 TCCATGACACAAGCACAACTA 57.516 42.857 0.00 0.00 0.00 2.24
3023 6277 4.019792 TCCATGACACAAGCACAACTAT 57.980 40.909 0.00 0.00 0.00 2.12
3024 6278 5.159273 TCCATGACACAAGCACAACTATA 57.841 39.130 0.00 0.00 0.00 1.31
3025 6279 5.555966 TCCATGACACAAGCACAACTATAA 58.444 37.500 0.00 0.00 0.00 0.98
3026 6280 5.411361 TCCATGACACAAGCACAACTATAAC 59.589 40.000 0.00 0.00 0.00 1.89
3027 6281 5.181056 CCATGACACAAGCACAACTATAACA 59.819 40.000 0.00 0.00 0.00 2.41
3028 6282 6.293900 CCATGACACAAGCACAACTATAACAA 60.294 38.462 0.00 0.00 0.00 2.83
3029 6283 6.055231 TGACACAAGCACAACTATAACAAC 57.945 37.500 0.00 0.00 0.00 3.32
3030 6284 5.820423 TGACACAAGCACAACTATAACAACT 59.180 36.000 0.00 0.00 0.00 3.16
3031 6285 6.060028 ACACAAGCACAACTATAACAACTG 57.940 37.500 0.00 0.00 0.00 3.16
3032 6286 5.008613 ACACAAGCACAACTATAACAACTGG 59.991 40.000 0.00 0.00 0.00 4.00
3033 6287 5.008613 CACAAGCACAACTATAACAACTGGT 59.991 40.000 0.00 0.00 0.00 4.00
3034 6288 5.238650 ACAAGCACAACTATAACAACTGGTC 59.761 40.000 0.00 0.00 0.00 4.02
3035 6289 3.994392 AGCACAACTATAACAACTGGTCG 59.006 43.478 0.00 0.00 0.00 4.79
3036 6290 3.744426 GCACAACTATAACAACTGGTCGT 59.256 43.478 0.00 0.00 0.00 4.34
3037 6291 4.212636 GCACAACTATAACAACTGGTCGTT 59.787 41.667 0.00 0.00 35.88 3.85
3038 6292 5.277634 GCACAACTATAACAACTGGTCGTTT 60.278 40.000 0.00 0.00 32.27 3.60
3039 6293 6.721321 CACAACTATAACAACTGGTCGTTTT 58.279 36.000 0.00 0.00 32.27 2.43
3040 6294 6.849305 CACAACTATAACAACTGGTCGTTTTC 59.151 38.462 0.00 0.00 32.27 2.29
3041 6295 6.764560 ACAACTATAACAACTGGTCGTTTTCT 59.235 34.615 0.00 0.00 32.27 2.52
3042 6296 7.042254 ACAACTATAACAACTGGTCGTTTTCTC 60.042 37.037 0.00 0.00 32.27 2.87
3043 6297 4.985044 ATAACAACTGGTCGTTTTCTCG 57.015 40.909 0.00 0.00 32.27 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.315142 TCAAATCATTCAAAATAGAGTGCCAC 58.685 34.615 0.00 0.00 0.00 5.01
76 77 1.868469 CAACCACCACTTTTGCCATG 58.132 50.000 0.00 0.00 0.00 3.66
159 164 3.201266 ACAAATGTTAGGCGATTCCCCTA 59.799 43.478 0.00 0.00 33.88 3.53
345 353 6.699575 AGATTAGTTAAATGGCAAGCGATT 57.300 33.333 0.00 0.00 0.00 3.34
352 360 7.502226 CCAATGACCTAGATTAGTTAAATGGCA 59.498 37.037 0.00 0.00 0.00 4.92
360 368 6.064717 GCCAATCCAATGACCTAGATTAGTT 58.935 40.000 0.00 0.00 0.00 2.24
362 370 5.006386 GGCCAATCCAATGACCTAGATTAG 58.994 45.833 0.00 0.00 34.01 1.73
392 400 6.128172 GGATAAATTCAACTATCTCGGCCATG 60.128 42.308 2.24 0.00 0.00 3.66
409 418 7.936026 ATAAGAAGGCCCAAATGGATAAATT 57.064 32.000 0.00 0.00 37.39 1.82
540 549 1.823899 GATGGGCCGATTCCACCAC 60.824 63.158 0.20 0.00 37.08 4.16
549 561 0.690192 TCAAAACTCTGATGGGCCGA 59.310 50.000 0.00 0.00 0.00 5.54
551 563 1.541588 GTGTCAAAACTCTGATGGGCC 59.458 52.381 0.00 0.00 0.00 5.80
561 573 3.869246 CACCGACTACAAGTGTCAAAACT 59.131 43.478 0.00 0.00 34.37 2.66
575 587 3.146066 AGAAAAATGCAAGCACCGACTA 58.854 40.909 0.00 0.00 0.00 2.59
576 588 1.956477 AGAAAAATGCAAGCACCGACT 59.044 42.857 0.00 0.00 0.00 4.18
578 590 3.407698 TCTAGAAAAATGCAAGCACCGA 58.592 40.909 0.00 0.00 0.00 4.69
579 591 3.829886 TCTAGAAAAATGCAAGCACCG 57.170 42.857 0.00 0.00 0.00 4.94
611 623 5.584649 ACTGAATGAATATCGCCGAAAAGAA 59.415 36.000 0.00 0.00 0.00 2.52
625 637 8.840321 CGGGAACATATCTTTTACTGAATGAAT 58.160 33.333 0.00 0.00 0.00 2.57
637 649 5.786264 ATAGTCGACGGGAACATATCTTT 57.214 39.130 10.46 0.00 0.00 2.52
639 651 5.802465 TCTATAGTCGACGGGAACATATCT 58.198 41.667 10.46 0.00 0.00 1.98
644 656 2.171237 TCCTCTATAGTCGACGGGAACA 59.829 50.000 10.46 0.00 0.00 3.18
662 674 1.340248 ACGAAGTCATCACACGTTCCT 59.660 47.619 0.00 0.00 29.74 3.36
687 699 4.887071 ACTGAGCCAACACAACATCTAAAA 59.113 37.500 0.00 0.00 0.00 1.52
690 702 3.324846 AGACTGAGCCAACACAACATCTA 59.675 43.478 0.00 0.00 0.00 1.98
726 738 4.766375 ACATATGCACACACTACCCTTAC 58.234 43.478 1.58 0.00 0.00 2.34
885 3867 6.431543 TGTCAGAAAATCCTAATTTTGCGGTA 59.568 34.615 1.13 0.00 43.48 4.02
1036 4018 1.816863 ATGACAGGCGACGAGTGGTT 61.817 55.000 0.00 0.00 0.00 3.67
1137 4119 2.528127 TCGGGGTTGCTGGAGGAA 60.528 61.111 0.00 0.00 0.00 3.36
1148 4130 0.178947 GATCTGGATCTCCTCGGGGT 60.179 60.000 0.00 0.00 36.82 4.95
1260 4242 2.032981 CTTGCCTTTGCGGTCTGTT 58.967 52.632 0.00 0.00 41.78 3.16
1839 4833 1.807981 CGCGCAGAACATCCGGTTA 60.808 57.895 8.75 0.00 40.63 2.85
2014 5008 2.360350 CATGAACTGGCAGCCGGT 60.360 61.111 21.39 21.39 46.37 5.28
2046 5044 1.701847 AGATTCAGGTGGAGCAGTTGT 59.298 47.619 0.00 0.00 0.00 3.32
2049 5047 1.949799 AGAGATTCAGGTGGAGCAGT 58.050 50.000 0.00 0.00 0.00 4.40
2052 5050 1.472376 CGGAAGAGATTCAGGTGGAGC 60.472 57.143 0.00 0.00 0.00 4.70
2068 5069 4.261114 GGTCCGTAATTTTGTTGTTCGGAA 60.261 41.667 5.01 0.00 45.17 4.30
2070 5071 3.251487 AGGTCCGTAATTTTGTTGTTCGG 59.749 43.478 0.00 0.00 38.16 4.30
2078 5079 4.165779 GCACATGAAGGTCCGTAATTTTG 58.834 43.478 0.00 0.00 0.00 2.44
2088 5089 2.175878 ACTCTGTGCACATGAAGGTC 57.824 50.000 22.00 0.00 0.00 3.85
2091 5092 4.512944 AGTTTGTACTCTGTGCACATGAAG 59.487 41.667 22.00 19.30 0.00 3.02
2094 5095 4.389992 CCTAGTTTGTACTCTGTGCACATG 59.610 45.833 22.00 18.14 35.78 3.21
2103 5106 0.886563 ACGCGCCTAGTTTGTACTCT 59.113 50.000 5.73 0.00 35.78 3.24
2119 5122 1.202110 CCTGCAGATCACATGAAACGC 60.202 52.381 17.39 0.00 0.00 4.84
2120 5123 2.079158 ACCTGCAGATCACATGAAACG 58.921 47.619 17.39 0.00 0.00 3.60
2126 5135 1.450848 CCGCACCTGCAGATCACAT 60.451 57.895 17.39 0.00 42.21 3.21
2145 5158 2.421424 GCAAATGTAGCAGAAGGAGTGG 59.579 50.000 0.00 0.00 0.00 4.00
2203 5216 2.782192 GTCAGTAAGTAGTACGCATGCG 59.218 50.000 36.79 36.79 46.03 4.73
2207 5220 2.163010 GCAGGTCAGTAAGTAGTACGCA 59.837 50.000 0.00 0.00 37.81 5.24
2224 5249 0.949397 CGGATCATTCACCATGCAGG 59.051 55.000 0.00 0.00 45.67 4.85
2242 5267 1.184349 GTCTTGAGCGTCGATCTTCG 58.816 55.000 12.28 0.36 42.10 3.79
2252 5277 0.038526 AGTACCGTTGGTCTTGAGCG 60.039 55.000 0.00 0.00 37.09 5.03
2260 5285 0.472352 TCCCCTCAAGTACCGTTGGT 60.472 55.000 0.00 0.00 40.16 3.67
2262 5287 1.338769 CCTTCCCCTCAAGTACCGTTG 60.339 57.143 0.00 0.00 0.00 4.10
2283 5309 3.963428 ACCCATCTGTGAGAGTAACAC 57.037 47.619 0.00 0.00 38.55 3.32
2284 5310 4.593206 AGAAACCCATCTGTGAGAGTAACA 59.407 41.667 0.00 0.00 0.00 2.41
2285 5311 5.046950 AGAGAAACCCATCTGTGAGAGTAAC 60.047 44.000 0.00 0.00 0.00 2.50
2291 5317 3.969287 TGAGAGAAACCCATCTGTGAG 57.031 47.619 0.00 0.00 0.00 3.51
2292 5318 4.916041 ATTGAGAGAAACCCATCTGTGA 57.084 40.909 0.00 0.00 0.00 3.58
2293 5319 5.972107 AAATTGAGAGAAACCCATCTGTG 57.028 39.130 0.00 0.00 0.00 3.66
2296 5322 9.933723 CAAAATTAAATTGAGAGAAACCCATCT 57.066 29.630 0.00 0.00 0.00 2.90
2297 5323 9.710900 ACAAAATTAAATTGAGAGAAACCCATC 57.289 29.630 10.36 0.00 0.00 3.51
2298 5324 9.492973 CACAAAATTAAATTGAGAGAAACCCAT 57.507 29.630 10.36 0.00 0.00 4.00
2455 5709 2.351706 TTCCCGTTTTGCACCTAGTT 57.648 45.000 0.00 0.00 0.00 2.24
2477 5731 8.397148 GTTTTGCAATTTGGAATTCAAGAAAGA 58.603 29.630 7.93 0.00 36.62 2.52
2529 5783 6.850555 ACAACTACTCAAACCTACTACGATC 58.149 40.000 0.00 0.00 0.00 3.69
2577 5831 6.299023 TGTGACACACATACATCTGTTTTC 57.701 37.500 3.56 0.00 39.62 2.29
2600 5854 3.393609 ACATCACATGGCTCTATGGATGT 59.606 43.478 16.56 16.56 40.31 3.06
2611 5865 2.883574 CAAACATCCACATCACATGGC 58.116 47.619 0.00 0.00 37.13 4.40
2620 5874 2.749076 GCATGAGTAGCAAACATCCACA 59.251 45.455 0.00 0.00 0.00 4.17
2660 5914 6.436218 TGTAGCTCTGTCTGGTTATCAACTAA 59.564 38.462 0.00 0.00 0.00 2.24
2663 5917 5.073311 TGTAGCTCTGTCTGGTTATCAAC 57.927 43.478 0.00 0.00 0.00 3.18
2664 5918 5.738619 TTGTAGCTCTGTCTGGTTATCAA 57.261 39.130 0.00 0.00 0.00 2.57
2665 5919 5.939764 ATTGTAGCTCTGTCTGGTTATCA 57.060 39.130 0.00 0.00 0.00 2.15
2683 5937 9.154847 GGCATTTTATTTCTCTTTTGCTATTGT 57.845 29.630 0.00 0.00 0.00 2.71
2684 5938 9.374838 AGGCATTTTATTTCTCTTTTGCTATTG 57.625 29.630 0.00 0.00 0.00 1.90
2685 5939 9.948964 AAGGCATTTTATTTCTCTTTTGCTATT 57.051 25.926 0.00 0.00 0.00 1.73
2686 5940 9.591792 GAAGGCATTTTATTTCTCTTTTGCTAT 57.408 29.630 0.00 0.00 0.00 2.97
2687 5941 8.584157 TGAAGGCATTTTATTTCTCTTTTGCTA 58.416 29.630 0.00 0.00 0.00 3.49
2688 5942 7.444299 TGAAGGCATTTTATTTCTCTTTTGCT 58.556 30.769 0.00 0.00 0.00 3.91
2689 5943 7.656707 TGAAGGCATTTTATTTCTCTTTTGC 57.343 32.000 0.00 0.00 0.00 3.68
2692 5946 9.591792 GCTTATGAAGGCATTTTATTTCTCTTT 57.408 29.630 0.00 0.00 35.94 2.52
2693 5947 8.752187 TGCTTATGAAGGCATTTTATTTCTCTT 58.248 29.630 0.00 0.00 35.94 2.85
2694 5948 8.297470 TGCTTATGAAGGCATTTTATTTCTCT 57.703 30.769 0.00 0.00 35.94 3.10
2710 5964 7.828508 ATATCTTGCCTTCAATGCTTATGAA 57.171 32.000 0.00 0.00 35.60 2.57
2711 5965 7.654568 CAATATCTTGCCTTCAATGCTTATGA 58.345 34.615 0.00 0.00 0.00 2.15
2712 5966 7.869016 CAATATCTTGCCTTCAATGCTTATG 57.131 36.000 0.00 0.00 0.00 1.90
2727 5981 6.255020 GCTTTCTTGGATGTTGCAATATCTTG 59.745 38.462 28.36 19.95 35.36 3.02
2728 5982 6.071221 TGCTTTCTTGGATGTTGCAATATCTT 60.071 34.615 28.36 5.08 0.00 2.40
2729 5983 5.419788 TGCTTTCTTGGATGTTGCAATATCT 59.580 36.000 28.36 2.66 0.00 1.98
2730 5984 5.653507 TGCTTTCTTGGATGTTGCAATATC 58.346 37.500 23.70 23.70 0.00 1.63
2731 5985 5.664294 TGCTTTCTTGGATGTTGCAATAT 57.336 34.783 8.59 8.59 0.00 1.28
2732 5986 5.664294 ATGCTTTCTTGGATGTTGCAATA 57.336 34.783 0.59 0.00 32.66 1.90
2733 5987 4.546829 ATGCTTTCTTGGATGTTGCAAT 57.453 36.364 0.59 0.00 32.66 3.56
2734 5988 4.059511 CAATGCTTTCTTGGATGTTGCAA 58.940 39.130 0.00 0.00 32.66 4.08
2735 5989 3.069872 ACAATGCTTTCTTGGATGTTGCA 59.930 39.130 0.00 0.00 0.00 4.08
2736 5990 3.656559 ACAATGCTTTCTTGGATGTTGC 58.343 40.909 0.00 0.00 0.00 4.17
2737 5991 5.771469 TGTACAATGCTTTCTTGGATGTTG 58.229 37.500 0.00 0.00 0.00 3.33
2738 5992 6.183360 TGTTGTACAATGCTTTCTTGGATGTT 60.183 34.615 12.26 0.00 0.00 2.71
2739 5993 5.301551 TGTTGTACAATGCTTTCTTGGATGT 59.698 36.000 12.26 0.00 0.00 3.06
2740 5994 5.630680 GTGTTGTACAATGCTTTCTTGGATG 59.369 40.000 12.26 0.00 0.00 3.51
2741 5995 5.536161 AGTGTTGTACAATGCTTTCTTGGAT 59.464 36.000 12.26 0.00 0.00 3.41
2742 5996 4.887071 AGTGTTGTACAATGCTTTCTTGGA 59.113 37.500 12.26 0.00 0.00 3.53
2743 5997 5.186996 AGTGTTGTACAATGCTTTCTTGG 57.813 39.130 12.26 0.00 0.00 3.61
2744 5998 8.693504 CATTTAGTGTTGTACAATGCTTTCTTG 58.306 33.333 12.26 1.17 0.00 3.02
2745 5999 8.413229 ACATTTAGTGTTGTACAATGCTTTCTT 58.587 29.630 12.26 0.00 38.01 2.52
2746 6000 7.940850 ACATTTAGTGTTGTACAATGCTTTCT 58.059 30.769 12.26 6.91 38.01 2.52
2747 6001 9.113876 GTACATTTAGTGTTGTACAATGCTTTC 57.886 33.333 12.26 0.00 44.80 2.62
2758 6012 9.367444 GCTAGAATAGTGTACATTTAGTGTTGT 57.633 33.333 0.00 0.00 41.93 3.32
2759 6013 9.366216 TGCTAGAATAGTGTACATTTAGTGTTG 57.634 33.333 0.00 0.00 41.93 3.33
2760 6014 9.938280 TTGCTAGAATAGTGTACATTTAGTGTT 57.062 29.630 0.00 0.00 41.93 3.32
2761 6015 9.367444 GTTGCTAGAATAGTGTACATTTAGTGT 57.633 33.333 0.00 0.00 41.93 3.55
2762 6016 9.587772 AGTTGCTAGAATAGTGTACATTTAGTG 57.412 33.333 0.00 0.00 41.93 2.74
2766 6020 9.587772 CACTAGTTGCTAGAATAGTGTACATTT 57.412 33.333 9.83 0.00 41.93 2.32
2767 6021 8.198109 CCACTAGTTGCTAGAATAGTGTACATT 58.802 37.037 14.38 0.00 42.22 2.71
2768 6022 7.342284 ACCACTAGTTGCTAGAATAGTGTACAT 59.658 37.037 14.38 0.00 42.22 2.29
2769 6023 6.662234 ACCACTAGTTGCTAGAATAGTGTACA 59.338 38.462 14.38 0.00 42.22 2.90
2770 6024 7.098074 ACCACTAGTTGCTAGAATAGTGTAC 57.902 40.000 14.38 0.00 42.22 2.90
2771 6025 7.713734 AACCACTAGTTGCTAGAATAGTGTA 57.286 36.000 14.38 0.00 42.22 2.90
2772 6026 6.607004 AACCACTAGTTGCTAGAATAGTGT 57.393 37.500 14.38 4.44 42.22 3.55
2785 6039 2.033602 GCGCCCCAACCACTAGTT 59.966 61.111 0.00 0.00 40.16 2.24
2786 6040 3.246112 TGCGCCCCAACCACTAGT 61.246 61.111 4.18 0.00 0.00 2.57
2787 6041 2.746277 GTGCGCCCCAACCACTAG 60.746 66.667 4.18 0.00 0.00 2.57
2788 6042 4.338710 GGTGCGCCCCAACCACTA 62.339 66.667 3.18 0.00 0.00 2.74
2806 6060 4.760047 CTTAGGCGGCGCACCAGT 62.760 66.667 34.36 14.21 34.57 4.00
2813 6067 2.814913 AAACTTCCCCTTAGGCGGCG 62.815 60.000 0.51 0.51 34.51 6.46
2814 6068 1.001269 AAACTTCCCCTTAGGCGGC 60.001 57.895 0.00 0.00 34.51 6.53
2815 6069 0.679960 CCAAACTTCCCCTTAGGCGG 60.680 60.000 0.00 0.00 34.51 6.13
2816 6070 0.679960 CCCAAACTTCCCCTTAGGCG 60.680 60.000 0.00 0.00 34.51 5.52
2817 6071 0.970937 GCCCAAACTTCCCCTTAGGC 60.971 60.000 0.00 0.00 34.51 3.93
2818 6072 0.679960 CGCCCAAACTTCCCCTTAGG 60.680 60.000 0.00 0.00 0.00 2.69
2819 6073 0.679960 CCGCCCAAACTTCCCCTTAG 60.680 60.000 0.00 0.00 0.00 2.18
2820 6074 1.381076 CCGCCCAAACTTCCCCTTA 59.619 57.895 0.00 0.00 0.00 2.69
2821 6075 2.117423 CCGCCCAAACTTCCCCTT 59.883 61.111 0.00 0.00 0.00 3.95
2822 6076 3.182996 ACCGCCCAAACTTCCCCT 61.183 61.111 0.00 0.00 0.00 4.79
2823 6077 2.989253 CACCGCCCAAACTTCCCC 60.989 66.667 0.00 0.00 0.00 4.81
2824 6078 3.680786 GCACCGCCCAAACTTCCC 61.681 66.667 0.00 0.00 0.00 3.97
2825 6079 4.038080 CGCACCGCCCAAACTTCC 62.038 66.667 0.00 0.00 0.00 3.46
2826 6080 2.966309 CTCGCACCGCCCAAACTTC 61.966 63.158 0.00 0.00 0.00 3.01
2827 6081 2.978010 CTCGCACCGCCCAAACTT 60.978 61.111 0.00 0.00 0.00 2.66
2834 6088 4.148825 ATCTCACCTCGCACCGCC 62.149 66.667 0.00 0.00 0.00 6.13
2835 6089 2.887568 CATCTCACCTCGCACCGC 60.888 66.667 0.00 0.00 0.00 5.68
2836 6090 2.887568 GCATCTCACCTCGCACCG 60.888 66.667 0.00 0.00 0.00 4.94
2837 6091 2.887568 CGCATCTCACCTCGCACC 60.888 66.667 0.00 0.00 0.00 5.01
2838 6092 3.558411 GCGCATCTCACCTCGCAC 61.558 66.667 0.30 0.00 45.99 5.34
2841 6095 4.899239 GGGGCGCATCTCACCTCG 62.899 72.222 10.83 0.00 0.00 4.63
2842 6096 2.932130 GAAGGGGCGCATCTCACCTC 62.932 65.000 10.83 0.00 0.00 3.85
2843 6097 3.011517 AAGGGGCGCATCTCACCT 61.012 61.111 10.83 3.28 0.00 4.00
2844 6098 2.514824 GAAGGGGCGCATCTCACC 60.515 66.667 10.83 0.00 0.00 4.02
2845 6099 2.514824 GGAAGGGGCGCATCTCAC 60.515 66.667 10.83 4.03 0.00 3.51
2846 6100 3.008517 TGGAAGGGGCGCATCTCA 61.009 61.111 10.83 0.00 0.00 3.27
2847 6101 1.686325 TAGTGGAAGGGGCGCATCTC 61.686 60.000 10.83 0.00 0.00 2.75
2848 6102 1.056700 ATAGTGGAAGGGGCGCATCT 61.057 55.000 10.83 2.14 0.00 2.90
2849 6103 0.603975 GATAGTGGAAGGGGCGCATC 60.604 60.000 10.83 0.36 0.00 3.91
2850 6104 1.451936 GATAGTGGAAGGGGCGCAT 59.548 57.895 10.83 0.00 0.00 4.73
2851 6105 2.742116 GGATAGTGGAAGGGGCGCA 61.742 63.158 10.83 0.00 0.00 6.09
2852 6106 2.111251 GGATAGTGGAAGGGGCGC 59.889 66.667 0.00 0.00 0.00 6.53
2853 6107 0.760945 AGAGGATAGTGGAAGGGGCG 60.761 60.000 0.00 0.00 0.00 6.13
2854 6108 1.512735 AAGAGGATAGTGGAAGGGGC 58.487 55.000 0.00 0.00 0.00 5.80
2855 6109 8.709308 CATATATAAAGAGGATAGTGGAAGGGG 58.291 40.741 0.00 0.00 0.00 4.79
2856 6110 8.207545 GCATATATAAAGAGGATAGTGGAAGGG 58.792 40.741 0.00 0.00 0.00 3.95
2857 6111 8.762645 TGCATATATAAAGAGGATAGTGGAAGG 58.237 37.037 0.00 0.00 0.00 3.46
2858 6112 9.593134 GTGCATATATAAAGAGGATAGTGGAAG 57.407 37.037 0.00 0.00 0.00 3.46
2859 6113 9.326489 AGTGCATATATAAAGAGGATAGTGGAA 57.674 33.333 0.00 0.00 0.00 3.53
2860 6114 8.901472 AGTGCATATATAAAGAGGATAGTGGA 57.099 34.615 0.00 0.00 0.00 4.02
2867 6121 9.760926 AGAGTGATAGTGCATATATAAAGAGGA 57.239 33.333 0.00 0.00 0.00 3.71
2879 6133 9.314133 TGGATAGTATAAAGAGTGATAGTGCAT 57.686 33.333 0.00 0.00 0.00 3.96
2880 6134 8.706322 TGGATAGTATAAAGAGTGATAGTGCA 57.294 34.615 0.00 0.00 0.00 4.57
2881 6135 9.579768 CATGGATAGTATAAAGAGTGATAGTGC 57.420 37.037 0.00 0.00 0.00 4.40
2883 6137 8.754080 GCCATGGATAGTATAAAGAGTGATAGT 58.246 37.037 18.40 0.00 0.00 2.12
2884 6138 8.200792 GGCCATGGATAGTATAAAGAGTGATAG 58.799 40.741 18.40 0.00 0.00 2.08
2885 6139 7.678171 TGGCCATGGATAGTATAAAGAGTGATA 59.322 37.037 18.40 0.00 0.00 2.15
2886 6140 6.501805 TGGCCATGGATAGTATAAAGAGTGAT 59.498 38.462 18.40 0.00 0.00 3.06
2887 6141 5.843969 TGGCCATGGATAGTATAAAGAGTGA 59.156 40.000 18.40 0.00 0.00 3.41
2888 6142 6.114187 TGGCCATGGATAGTATAAAGAGTG 57.886 41.667 18.40 0.00 0.00 3.51
2889 6143 6.959606 ATGGCCATGGATAGTATAAAGAGT 57.040 37.500 20.04 0.00 0.00 3.24
2890 6144 7.170965 ACAATGGCCATGGATAGTATAAAGAG 58.829 38.462 27.65 0.00 0.00 2.85
2891 6145 7.090319 ACAATGGCCATGGATAGTATAAAGA 57.910 36.000 27.65 0.00 0.00 2.52
2892 6146 6.942005 TGACAATGGCCATGGATAGTATAAAG 59.058 38.462 27.65 0.00 0.00 1.85
2893 6147 6.846988 TGACAATGGCCATGGATAGTATAAA 58.153 36.000 27.65 0.00 0.00 1.40
2894 6148 6.446909 TGACAATGGCCATGGATAGTATAA 57.553 37.500 27.65 0.00 0.00 0.98
2895 6149 6.641161 ATGACAATGGCCATGGATAGTATA 57.359 37.500 27.65 9.88 0.00 1.47
2896 6150 4.999469 TGACAATGGCCATGGATAGTAT 57.001 40.909 27.65 2.23 0.00 2.12
2897 6151 4.999469 ATGACAATGGCCATGGATAGTA 57.001 40.909 27.65 7.91 0.00 1.82
2898 6152 3.889859 ATGACAATGGCCATGGATAGT 57.110 42.857 27.65 16.19 0.00 2.12
2899 6153 6.209986 ACAAATATGACAATGGCCATGGATAG 59.790 38.462 27.65 13.15 0.00 2.08
2900 6154 6.076653 ACAAATATGACAATGGCCATGGATA 58.923 36.000 27.65 14.85 0.00 2.59
2901 6155 4.903049 ACAAATATGACAATGGCCATGGAT 59.097 37.500 27.65 13.05 0.00 3.41
2902 6156 4.288398 ACAAATATGACAATGGCCATGGA 58.712 39.130 27.65 5.43 0.00 3.41
2903 6157 4.675976 ACAAATATGACAATGGCCATGG 57.324 40.909 21.63 20.39 0.00 3.66
2904 6158 5.909477 AGAACAAATATGACAATGGCCATG 58.091 37.500 21.63 15.80 0.00 3.66
2905 6159 5.069516 GGAGAACAAATATGACAATGGCCAT 59.930 40.000 14.09 14.09 0.00 4.40
2906 6160 4.402155 GGAGAACAAATATGACAATGGCCA 59.598 41.667 8.56 8.56 0.00 5.36
2907 6161 4.402155 TGGAGAACAAATATGACAATGGCC 59.598 41.667 0.00 0.00 0.00 5.36
2908 6162 5.343249 GTGGAGAACAAATATGACAATGGC 58.657 41.667 0.00 0.00 0.00 4.40
2909 6163 5.418524 TGGTGGAGAACAAATATGACAATGG 59.581 40.000 0.00 0.00 0.00 3.16
2910 6164 6.513806 TGGTGGAGAACAAATATGACAATG 57.486 37.500 0.00 0.00 0.00 2.82
2911 6165 6.493115 TGTTGGTGGAGAACAAATATGACAAT 59.507 34.615 0.00 0.00 30.35 2.71
2912 6166 5.830457 TGTTGGTGGAGAACAAATATGACAA 59.170 36.000 0.00 0.00 30.35 3.18
2913 6167 5.380900 TGTTGGTGGAGAACAAATATGACA 58.619 37.500 0.00 0.00 30.35 3.58
2914 6168 5.957842 TGTTGGTGGAGAACAAATATGAC 57.042 39.130 0.00 0.00 30.35 3.06
2915 6169 6.968263 TTTGTTGGTGGAGAACAAATATGA 57.032 33.333 0.00 0.00 44.46 2.15
2920 6174 4.991687 GTGTTTTTGTTGGTGGAGAACAAA 59.008 37.500 0.00 0.00 46.49 2.83
2921 6175 4.039245 TGTGTTTTTGTTGGTGGAGAACAA 59.961 37.500 0.00 0.00 40.65 2.83
2922 6176 3.574396 TGTGTTTTTGTTGGTGGAGAACA 59.426 39.130 0.00 0.00 0.00 3.18
2923 6177 4.181309 TGTGTTTTTGTTGGTGGAGAAC 57.819 40.909 0.00 0.00 0.00 3.01
2924 6178 4.873746 TTGTGTTTTTGTTGGTGGAGAA 57.126 36.364 0.00 0.00 0.00 2.87
2925 6179 6.531503 TTATTGTGTTTTTGTTGGTGGAGA 57.468 33.333 0.00 0.00 0.00 3.71
2926 6180 7.923344 TGTATTATTGTGTTTTTGTTGGTGGAG 59.077 33.333 0.00 0.00 0.00 3.86
2927 6181 7.782049 TGTATTATTGTGTTTTTGTTGGTGGA 58.218 30.769 0.00 0.00 0.00 4.02
2928 6182 8.425577 TTGTATTATTGTGTTTTTGTTGGTGG 57.574 30.769 0.00 0.00 0.00 4.61
2929 6183 9.913451 CTTTGTATTATTGTGTTTTTGTTGGTG 57.087 29.630 0.00 0.00 0.00 4.17
2930 6184 9.103861 CCTTTGTATTATTGTGTTTTTGTTGGT 57.896 29.630 0.00 0.00 0.00 3.67
2931 6185 8.067189 GCCTTTGTATTATTGTGTTTTTGTTGG 58.933 33.333 0.00 0.00 0.00 3.77
2932 6186 8.825745 AGCCTTTGTATTATTGTGTTTTTGTTG 58.174 29.630 0.00 0.00 0.00 3.33
2933 6187 8.956533 AGCCTTTGTATTATTGTGTTTTTGTT 57.043 26.923 0.00 0.00 0.00 2.83
2934 6188 8.825745 CAAGCCTTTGTATTATTGTGTTTTTGT 58.174 29.630 0.00 0.00 0.00 2.83
2935 6189 8.281893 CCAAGCCTTTGTATTATTGTGTTTTTG 58.718 33.333 0.00 0.00 32.21 2.44
2936 6190 7.041440 GCCAAGCCTTTGTATTATTGTGTTTTT 60.041 33.333 0.00 0.00 32.21 1.94
2937 6191 6.426633 GCCAAGCCTTTGTATTATTGTGTTTT 59.573 34.615 0.00 0.00 32.21 2.43
2938 6192 5.931724 GCCAAGCCTTTGTATTATTGTGTTT 59.068 36.000 0.00 0.00 32.21 2.83
2939 6193 5.245977 AGCCAAGCCTTTGTATTATTGTGTT 59.754 36.000 0.00 0.00 32.21 3.32
2940 6194 4.772100 AGCCAAGCCTTTGTATTATTGTGT 59.228 37.500 0.00 0.00 32.21 3.72
2941 6195 5.105797 TGAGCCAAGCCTTTGTATTATTGTG 60.106 40.000 0.00 0.00 32.21 3.33
2942 6196 5.016173 TGAGCCAAGCCTTTGTATTATTGT 58.984 37.500 0.00 0.00 32.21 2.71
2943 6197 5.581126 TGAGCCAAGCCTTTGTATTATTG 57.419 39.130 0.00 0.00 32.21 1.90
2944 6198 4.098501 GCTGAGCCAAGCCTTTGTATTATT 59.901 41.667 0.00 0.00 37.20 1.40
2945 6199 3.633986 GCTGAGCCAAGCCTTTGTATTAT 59.366 43.478 0.00 0.00 37.20 1.28
2946 6200 3.016736 GCTGAGCCAAGCCTTTGTATTA 58.983 45.455 0.00 0.00 37.20 0.98
2947 6201 1.821136 GCTGAGCCAAGCCTTTGTATT 59.179 47.619 0.00 0.00 37.20 1.89
2948 6202 1.005215 AGCTGAGCCAAGCCTTTGTAT 59.995 47.619 0.00 0.00 44.68 2.29
2949 6203 0.401738 AGCTGAGCCAAGCCTTTGTA 59.598 50.000 0.00 0.00 44.68 2.41
2950 6204 0.401738 TAGCTGAGCCAAGCCTTTGT 59.598 50.000 0.00 0.00 44.68 2.83
2951 6205 1.200948 GTTAGCTGAGCCAAGCCTTTG 59.799 52.381 0.00 0.00 44.68 2.77
2952 6206 1.074566 AGTTAGCTGAGCCAAGCCTTT 59.925 47.619 0.00 0.00 44.68 3.11
2953 6207 0.695347 AGTTAGCTGAGCCAAGCCTT 59.305 50.000 0.00 0.00 44.68 4.35
2954 6208 0.251634 GAGTTAGCTGAGCCAAGCCT 59.748 55.000 0.00 0.00 44.68 4.58
2955 6209 0.036010 TGAGTTAGCTGAGCCAAGCC 60.036 55.000 0.00 0.00 44.68 4.35
2956 6210 1.082690 GTGAGTTAGCTGAGCCAAGC 58.917 55.000 0.00 0.00 43.88 4.01
2957 6211 1.677217 GGGTGAGTTAGCTGAGCCAAG 60.677 57.143 9.31 0.00 44.26 3.61
2958 6212 0.324943 GGGTGAGTTAGCTGAGCCAA 59.675 55.000 9.31 0.00 44.26 4.52
2959 6213 1.983224 GGGTGAGTTAGCTGAGCCA 59.017 57.895 9.31 0.00 44.26 4.75
2960 6214 0.391793 GTGGGTGAGTTAGCTGAGCC 60.392 60.000 7.32 7.32 44.93 4.70
2961 6215 0.610687 AGTGGGTGAGTTAGCTGAGC 59.389 55.000 0.00 0.00 0.00 4.26
2962 6216 4.021016 AGTTAAGTGGGTGAGTTAGCTGAG 60.021 45.833 0.00 0.00 31.65 3.35
2963 6217 3.901844 AGTTAAGTGGGTGAGTTAGCTGA 59.098 43.478 0.00 0.00 31.65 4.26
2964 6218 4.246458 GAGTTAAGTGGGTGAGTTAGCTG 58.754 47.826 0.00 0.00 32.68 4.24
2965 6219 3.056749 CGAGTTAAGTGGGTGAGTTAGCT 60.057 47.826 0.00 0.00 34.61 3.32
2966 6220 3.251571 CGAGTTAAGTGGGTGAGTTAGC 58.748 50.000 0.00 0.00 0.00 3.09
2967 6221 3.251571 GCGAGTTAAGTGGGTGAGTTAG 58.748 50.000 0.00 0.00 0.00 2.34
2968 6222 2.629137 TGCGAGTTAAGTGGGTGAGTTA 59.371 45.455 0.00 0.00 0.00 2.24
2969 6223 1.414919 TGCGAGTTAAGTGGGTGAGTT 59.585 47.619 0.00 0.00 0.00 3.01
2970 6224 1.045407 TGCGAGTTAAGTGGGTGAGT 58.955 50.000 0.00 0.00 0.00 3.41
2971 6225 1.270094 TGTGCGAGTTAAGTGGGTGAG 60.270 52.381 0.00 0.00 0.00 3.51
2972 6226 0.753867 TGTGCGAGTTAAGTGGGTGA 59.246 50.000 0.00 0.00 0.00 4.02
2973 6227 1.531149 CTTGTGCGAGTTAAGTGGGTG 59.469 52.381 0.00 0.00 0.00 4.61
2974 6228 1.878953 CTTGTGCGAGTTAAGTGGGT 58.121 50.000 0.00 0.00 0.00 4.51
2975 6229 0.517316 GCTTGTGCGAGTTAAGTGGG 59.483 55.000 0.00 0.00 0.00 4.61
2976 6230 1.225855 TGCTTGTGCGAGTTAAGTGG 58.774 50.000 0.00 0.00 43.34 4.00
2977 6231 2.480037 TGATGCTTGTGCGAGTTAAGTG 59.520 45.455 0.00 0.00 43.34 3.16
2978 6232 2.480419 GTGATGCTTGTGCGAGTTAAGT 59.520 45.455 0.00 0.00 43.34 2.24
2979 6233 2.480037 TGTGATGCTTGTGCGAGTTAAG 59.520 45.455 0.00 0.00 43.34 1.85
2980 6234 2.488952 TGTGATGCTTGTGCGAGTTAA 58.511 42.857 0.00 0.00 43.34 2.01
2981 6235 2.162319 TGTGATGCTTGTGCGAGTTA 57.838 45.000 0.00 0.00 43.34 2.24
2982 6236 1.527034 ATGTGATGCTTGTGCGAGTT 58.473 45.000 0.00 0.00 43.34 3.01
2983 6237 1.466167 GAATGTGATGCTTGTGCGAGT 59.534 47.619 0.00 0.00 43.34 4.18
2984 6238 1.202110 GGAATGTGATGCTTGTGCGAG 60.202 52.381 0.00 0.00 43.34 5.03
2985 6239 0.804364 GGAATGTGATGCTTGTGCGA 59.196 50.000 0.00 0.00 43.34 5.10
2986 6240 0.522626 TGGAATGTGATGCTTGTGCG 59.477 50.000 0.00 0.00 43.34 5.34
2987 6241 2.164827 TCATGGAATGTGATGCTTGTGC 59.835 45.455 0.00 0.00 46.80 4.57
2988 6242 3.191791 TGTCATGGAATGTGATGCTTGTG 59.808 43.478 0.00 0.00 46.80 3.33
2989 6243 3.192001 GTGTCATGGAATGTGATGCTTGT 59.808 43.478 0.00 0.00 46.80 3.16
2990 6244 3.191791 TGTGTCATGGAATGTGATGCTTG 59.808 43.478 0.00 0.00 46.80 4.01
2991 6245 3.423749 TGTGTCATGGAATGTGATGCTT 58.576 40.909 0.00 0.00 46.80 3.91
2992 6246 3.076079 TGTGTCATGGAATGTGATGCT 57.924 42.857 0.00 0.00 46.80 3.79
2993 6247 3.766151 CTTGTGTCATGGAATGTGATGC 58.234 45.455 0.00 0.00 46.80 3.91
2994 6248 3.191791 TGCTTGTGTCATGGAATGTGATG 59.808 43.478 0.00 0.00 46.80 3.07
2995 6249 3.192001 GTGCTTGTGTCATGGAATGTGAT 59.808 43.478 0.00 0.00 46.80 3.06
2996 6250 2.553602 GTGCTTGTGTCATGGAATGTGA 59.446 45.455 0.00 0.00 46.80 3.58
2997 6251 2.293955 TGTGCTTGTGTCATGGAATGTG 59.706 45.455 0.00 0.00 46.80 3.21
2998 6252 2.585330 TGTGCTTGTGTCATGGAATGT 58.415 42.857 0.00 0.00 46.80 2.71
3000 6254 3.225104 AGTTGTGCTTGTGTCATGGAAT 58.775 40.909 0.00 0.00 0.00 3.01
3001 6255 2.653726 AGTTGTGCTTGTGTCATGGAA 58.346 42.857 0.00 0.00 0.00 3.53
3002 6256 2.346766 AGTTGTGCTTGTGTCATGGA 57.653 45.000 0.00 0.00 0.00 3.41
3003 6257 5.181056 TGTTATAGTTGTGCTTGTGTCATGG 59.819 40.000 0.00 0.00 0.00 3.66
3004 6258 6.239908 TGTTATAGTTGTGCTTGTGTCATG 57.760 37.500 0.00 0.00 0.00 3.07
3005 6259 6.486657 AGTTGTTATAGTTGTGCTTGTGTCAT 59.513 34.615 0.00 0.00 0.00 3.06
3006 6260 5.820423 AGTTGTTATAGTTGTGCTTGTGTCA 59.180 36.000 0.00 0.00 0.00 3.58
3007 6261 6.136071 CAGTTGTTATAGTTGTGCTTGTGTC 58.864 40.000 0.00 0.00 0.00 3.67
3008 6262 5.008613 CCAGTTGTTATAGTTGTGCTTGTGT 59.991 40.000 0.00 0.00 0.00 3.72
3009 6263 5.008613 ACCAGTTGTTATAGTTGTGCTTGTG 59.991 40.000 0.00 0.00 0.00 3.33
3010 6264 5.130350 ACCAGTTGTTATAGTTGTGCTTGT 58.870 37.500 0.00 0.00 0.00 3.16
3011 6265 5.614668 CGACCAGTTGTTATAGTTGTGCTTG 60.615 44.000 0.00 0.00 0.00 4.01
3012 6266 4.451096 CGACCAGTTGTTATAGTTGTGCTT 59.549 41.667 0.00 0.00 0.00 3.91
3013 6267 3.994392 CGACCAGTTGTTATAGTTGTGCT 59.006 43.478 0.00 0.00 0.00 4.40
3014 6268 3.744426 ACGACCAGTTGTTATAGTTGTGC 59.256 43.478 0.00 0.00 0.00 4.57
3015 6269 5.917541 AACGACCAGTTGTTATAGTTGTG 57.082 39.130 1.43 0.00 42.39 3.33
3016 6270 6.764560 AGAAAACGACCAGTTGTTATAGTTGT 59.235 34.615 3.87 0.00 43.37 3.32
3017 6271 7.186021 AGAAAACGACCAGTTGTTATAGTTG 57.814 36.000 3.87 0.00 43.37 3.16
3018 6272 6.145048 CGAGAAAACGACCAGTTGTTATAGTT 59.855 38.462 3.87 0.00 43.37 2.24
3019 6273 5.632347 CGAGAAAACGACCAGTTGTTATAGT 59.368 40.000 3.87 0.00 43.37 2.12
3020 6274 6.079151 CGAGAAAACGACCAGTTGTTATAG 57.921 41.667 3.87 0.00 43.37 1.31
3022 6276 4.985044 CGAGAAAACGACCAGTTGTTAT 57.015 40.909 3.87 0.00 43.37 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.