Multiple sequence alignment - TraesCS5B01G222800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G222800 chr5B 100.000 3504 0 0 1 3504 397837141 397833638 0.000000e+00 6471.0
1 TraesCS5B01G222800 chr5B 95.349 43 2 0 3047 3089 356371737 356371695 6.280000e-08 69.4
2 TraesCS5B01G222800 chr5B 94.286 35 2 0 777 811 21588478 21588444 2.000000e-03 54.7
3 TraesCS5B01G222800 chr5D 91.246 1405 47 27 1434 2803 338657872 338656509 0.000000e+00 1844.0
4 TraesCS5B01G222800 chr5D 90.498 1284 48 25 1705 2954 338657573 338656330 0.000000e+00 1628.0
5 TraesCS5B01G222800 chr5D 91.507 471 24 7 844 1299 338658341 338657872 4.930000e-178 634.0
6 TraesCS5B01G222800 chr5D 89.873 395 22 8 3115 3504 338656319 338655938 3.140000e-135 492.0
7 TraesCS5B01G222800 chr5A 90.773 932 47 22 1879 2802 439552440 439551540 0.000000e+00 1208.0
8 TraesCS5B01G222800 chr5A 83.903 907 72 43 845 1707 439553588 439552712 0.000000e+00 798.0
9 TraesCS5B01G222800 chr5A 86.783 575 70 4 156 729 439554742 439554173 1.370000e-178 636.0
10 TraesCS5B01G222800 chr5A 92.566 417 26 3 3092 3504 439551487 439551072 8.370000e-166 593.0
11 TraesCS5B01G222800 chr5A 79.239 867 88 47 860 1702 193889487 193890285 1.440000e-143 520.0
12 TraesCS5B01G222800 chr5A 78.088 753 77 46 866 1596 219061946 219061260 2.530000e-106 396.0
13 TraesCS5B01G222800 chr1A 83.047 873 88 29 860 1702 278491263 278490421 0.000000e+00 737.0
14 TraesCS5B01G222800 chr3A 82.743 875 85 37 860 1702 511043164 511044004 0.000000e+00 719.0
15 TraesCS5B01G222800 chr3A 100.000 31 0 0 777 807 608383516 608383486 1.360000e-04 58.4
16 TraesCS5B01G222800 chr6A 80.217 738 79 31 986 1702 390565793 390566484 3.140000e-135 492.0
17 TraesCS5B01G222800 chr6A 95.876 97 4 0 998 1094 129316996 129317092 1.300000e-34 158.0
18 TraesCS5B01G222800 chr3B 89.125 377 35 6 1329 1702 409337113 409336740 6.850000e-127 464.0
19 TraesCS5B01G222800 chr3B 93.548 155 9 1 1549 1702 727506713 727506867 2.720000e-56 230.0
20 TraesCS5B01G222800 chr3B 89.535 86 6 3 2950 3033 229821671 229821587 4.780000e-19 106.0
21 TraesCS5B01G222800 chr3B 97.436 39 1 0 3036 3074 756657302 756657340 2.260000e-07 67.6
22 TraesCS5B01G222800 chr2A 92.105 152 11 1 1552 1702 317994191 317994342 2.740000e-51 213.0
23 TraesCS5B01G222800 chr4B 90.667 150 14 0 1551 1700 218937623 218937772 2.130000e-47 200.0
24 TraesCS5B01G222800 chr4B 93.069 101 7 0 994 1094 459947254 459947154 7.840000e-32 148.0
25 TraesCS5B01G222800 chr4B 87.500 88 9 2 2948 3034 405327972 405327886 2.230000e-17 100.0
26 TraesCS5B01G222800 chr4B 100.000 28 0 0 777 804 158922783 158922756 6.000000e-03 52.8
27 TraesCS5B01G222800 chr6D 95.876 97 4 0 998 1094 106048844 106048940 1.300000e-34 158.0
28 TraesCS5B01G222800 chr4D 92.593 108 7 1 988 1094 373933848 373933741 1.680000e-33 154.0
29 TraesCS5B01G222800 chr7D 87.500 128 13 3 999 1126 602090017 602090141 1.010000e-30 145.0
30 TraesCS5B01G222800 chr7B 92.784 97 7 0 999 1095 681849930 681850026 1.310000e-29 141.0
31 TraesCS5B01G222800 chr7B 82.353 85 9 3 722 804 598468219 598468139 6.280000e-08 69.4
32 TraesCS5B01G222800 chr7B 100.000 31 0 0 777 807 162115248 162115218 1.360000e-04 58.4
33 TraesCS5B01G222800 chr1D 90.476 84 7 1 2951 3034 466120174 466120092 3.700000e-20 110.0
34 TraesCS5B01G222800 chr1D 80.952 105 20 0 2394 2498 291842116 291842220 2.240000e-12 84.2
35 TraesCS5B01G222800 chr3D 90.476 84 5 3 2951 3033 22268358 22268439 1.330000e-19 108.0
36 TraesCS5B01G222800 chr6B 89.412 85 8 1 2950 3034 450843593 450843676 4.780000e-19 106.0
37 TraesCS5B01G222800 chr6B 89.412 85 6 3 2951 3034 402144630 402144548 1.720000e-18 104.0
38 TraesCS5B01G222800 chr2D 88.506 87 9 1 2948 3034 265159498 265159583 1.720000e-18 104.0
39 TraesCS5B01G222800 chr2D 88.372 86 9 1 2949 3034 71262201 71262117 6.190000e-18 102.0
40 TraesCS5B01G222800 chr2B 84.314 102 11 4 2936 3033 683308514 683308614 1.040000e-15 95.3
41 TraesCS5B01G222800 chr2B 100.000 28 0 0 777 804 482319687 482319660 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G222800 chr5B 397833638 397837141 3503 True 6471.00 6471 100.00000 1 3504 1 chr5B.!!$R3 3503
1 TraesCS5B01G222800 chr5D 338655938 338658341 2403 True 1149.50 1844 90.78100 844 3504 4 chr5D.!!$R1 2660
2 TraesCS5B01G222800 chr5A 439551072 439554742 3670 True 808.75 1208 88.50625 156 3504 4 chr5A.!!$R2 3348
3 TraesCS5B01G222800 chr5A 193889487 193890285 798 False 520.00 520 79.23900 860 1702 1 chr5A.!!$F1 842
4 TraesCS5B01G222800 chr5A 219061260 219061946 686 True 396.00 396 78.08800 866 1596 1 chr5A.!!$R1 730
5 TraesCS5B01G222800 chr1A 278490421 278491263 842 True 737.00 737 83.04700 860 1702 1 chr1A.!!$R1 842
6 TraesCS5B01G222800 chr3A 511043164 511044004 840 False 719.00 719 82.74300 860 1702 1 chr3A.!!$F1 842
7 TraesCS5B01G222800 chr6A 390565793 390566484 691 False 492.00 492 80.21700 986 1702 1 chr6A.!!$F2 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.026803 GAAGCGCCACAATCATCGTC 59.973 55.0 2.29 0.0 0.00 4.20 F
74 75 0.106918 CGTCCTCCCTCACTAGAGCT 60.107 60.0 0.00 0.0 40.68 4.09 F
1207 1708 0.376852 TAAATCGTTGATGCGCTGCC 59.623 50.0 9.73 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 2597 0.459489 AGTGCACAAAATGGCGTGTT 59.541 45.000 21.04 0.00 35.51 3.32 R
1936 2604 6.220469 TGTCCTGTGACAGTGCACAAAATG 62.220 45.833 21.04 11.04 46.40 2.32 R
2556 3242 0.106268 ACCAACACAGGTTCCATGCA 60.106 50.000 0.00 0.00 39.34 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.110482 ACCATCTAACGACGATTACAAGC 58.890 43.478 0.00 0.00 0.00 4.01
23 24 4.109766 CCATCTAACGACGATTACAAGCA 58.890 43.478 0.00 0.00 0.00 3.91
24 25 4.026804 CCATCTAACGACGATTACAAGCAC 60.027 45.833 0.00 0.00 0.00 4.40
25 26 4.430137 TCTAACGACGATTACAAGCACT 57.570 40.909 0.00 0.00 0.00 4.40
26 27 4.163552 TCTAACGACGATTACAAGCACTG 58.836 43.478 0.00 0.00 0.00 3.66
27 28 1.710013 ACGACGATTACAAGCACTGG 58.290 50.000 0.00 0.00 0.00 4.00
28 29 1.271379 ACGACGATTACAAGCACTGGA 59.729 47.619 0.00 0.00 0.00 3.86
29 30 1.920574 CGACGATTACAAGCACTGGAG 59.079 52.381 0.00 0.00 0.00 3.86
30 31 2.415491 CGACGATTACAAGCACTGGAGA 60.415 50.000 0.00 0.00 0.00 3.71
31 32 3.182967 GACGATTACAAGCACTGGAGAG 58.817 50.000 0.00 0.00 0.00 3.20
32 33 2.826128 ACGATTACAAGCACTGGAGAGA 59.174 45.455 0.00 0.00 0.00 3.10
33 34 3.119316 ACGATTACAAGCACTGGAGAGAG 60.119 47.826 0.00 0.00 0.00 3.20
34 35 2.751166 TTACAAGCACTGGAGAGAGC 57.249 50.000 0.00 0.00 36.14 4.09
35 36 0.898320 TACAAGCACTGGAGAGAGCC 59.102 55.000 0.00 0.00 36.52 4.70
36 37 1.447489 CAAGCACTGGAGAGAGCCG 60.447 63.158 0.00 0.00 36.52 5.52
37 38 1.607756 AAGCACTGGAGAGAGCCGA 60.608 57.895 0.00 0.00 36.52 5.54
38 39 1.188219 AAGCACTGGAGAGAGCCGAA 61.188 55.000 0.00 0.00 36.52 4.30
39 40 1.153667 GCACTGGAGAGAGCCGAAG 60.154 63.158 0.00 0.00 30.07 3.79
40 41 1.599606 GCACTGGAGAGAGCCGAAGA 61.600 60.000 0.00 0.00 30.07 2.87
41 42 0.891373 CACTGGAGAGAGCCGAAGAA 59.109 55.000 0.00 0.00 0.00 2.52
42 43 1.135141 CACTGGAGAGAGCCGAAGAAG 60.135 57.143 0.00 0.00 0.00 2.85
43 44 0.179113 CTGGAGAGAGCCGAAGAAGC 60.179 60.000 0.00 0.00 0.00 3.86
44 45 1.226831 GGAGAGAGCCGAAGAAGCG 60.227 63.158 0.00 0.00 34.64 4.68
45 46 1.876263 GAGAGAGCCGAAGAAGCGC 60.876 63.158 0.00 0.00 34.64 5.92
46 47 2.888051 GAGAGCCGAAGAAGCGCC 60.888 66.667 2.29 0.00 34.64 6.53
47 48 3.649277 GAGAGCCGAAGAAGCGCCA 62.649 63.158 2.29 0.00 34.64 5.69
48 49 3.491652 GAGCCGAAGAAGCGCCAC 61.492 66.667 2.29 0.00 34.64 5.01
49 50 4.314440 AGCCGAAGAAGCGCCACA 62.314 61.111 2.29 0.00 34.64 4.17
50 51 3.353836 GCCGAAGAAGCGCCACAA 61.354 61.111 2.29 0.00 0.00 3.33
51 52 2.690778 GCCGAAGAAGCGCCACAAT 61.691 57.895 2.29 0.00 0.00 2.71
52 53 1.425428 CCGAAGAAGCGCCACAATC 59.575 57.895 2.29 0.66 0.00 2.67
53 54 1.298157 CCGAAGAAGCGCCACAATCA 61.298 55.000 2.29 0.00 0.00 2.57
54 55 0.729116 CGAAGAAGCGCCACAATCAT 59.271 50.000 2.29 0.00 0.00 2.45
55 56 1.267732 CGAAGAAGCGCCACAATCATC 60.268 52.381 2.29 0.00 0.00 2.92
56 57 0.729116 AAGAAGCGCCACAATCATCG 59.271 50.000 2.29 0.00 0.00 3.84
57 58 0.391661 AGAAGCGCCACAATCATCGT 60.392 50.000 2.29 0.00 0.00 3.73
58 59 0.026803 GAAGCGCCACAATCATCGTC 59.973 55.000 2.29 0.00 0.00 4.20
59 60 1.369091 AAGCGCCACAATCATCGTCC 61.369 55.000 2.29 0.00 0.00 4.79
60 61 1.815421 GCGCCACAATCATCGTCCT 60.815 57.895 0.00 0.00 0.00 3.85
61 62 1.766143 GCGCCACAATCATCGTCCTC 61.766 60.000 0.00 0.00 0.00 3.71
62 63 1.154205 CGCCACAATCATCGTCCTCC 61.154 60.000 0.00 0.00 0.00 4.30
63 64 0.815615 GCCACAATCATCGTCCTCCC 60.816 60.000 0.00 0.00 0.00 4.30
64 65 0.833287 CCACAATCATCGTCCTCCCT 59.167 55.000 0.00 0.00 0.00 4.20
65 66 1.202580 CCACAATCATCGTCCTCCCTC 60.203 57.143 0.00 0.00 0.00 4.30
66 67 1.482182 CACAATCATCGTCCTCCCTCA 59.518 52.381 0.00 0.00 0.00 3.86
67 68 1.482593 ACAATCATCGTCCTCCCTCAC 59.517 52.381 0.00 0.00 0.00 3.51
68 69 1.759445 CAATCATCGTCCTCCCTCACT 59.241 52.381 0.00 0.00 0.00 3.41
69 70 2.959030 CAATCATCGTCCTCCCTCACTA 59.041 50.000 0.00 0.00 0.00 2.74
70 71 2.350057 TCATCGTCCTCCCTCACTAG 57.650 55.000 0.00 0.00 0.00 2.57
71 72 1.844497 TCATCGTCCTCCCTCACTAGA 59.156 52.381 0.00 0.00 0.00 2.43
72 73 2.158740 TCATCGTCCTCCCTCACTAGAG 60.159 54.545 0.00 0.00 41.72 2.43
73 74 0.107116 TCGTCCTCCCTCACTAGAGC 60.107 60.000 0.00 0.00 40.68 4.09
74 75 0.106918 CGTCCTCCCTCACTAGAGCT 60.107 60.000 0.00 0.00 40.68 4.09
75 76 1.141254 CGTCCTCCCTCACTAGAGCTA 59.859 57.143 0.00 0.00 40.68 3.32
76 77 2.808933 CGTCCTCCCTCACTAGAGCTAG 60.809 59.091 0.00 3.06 40.68 3.42
77 78 1.777878 TCCTCCCTCACTAGAGCTAGG 59.222 57.143 9.18 0.00 40.74 3.02
78 79 1.616159 CTCCCTCACTAGAGCTAGGC 58.384 60.000 9.18 0.00 40.68 3.93
79 80 0.927029 TCCCTCACTAGAGCTAGGCA 59.073 55.000 9.18 0.00 40.68 4.75
80 81 1.288037 TCCCTCACTAGAGCTAGGCAA 59.712 52.381 9.18 0.00 40.68 4.52
81 82 2.111384 CCCTCACTAGAGCTAGGCAAA 58.889 52.381 9.18 0.00 40.68 3.68
82 83 2.159028 CCCTCACTAGAGCTAGGCAAAC 60.159 54.545 9.18 0.00 40.68 2.93
83 84 2.763448 CCTCACTAGAGCTAGGCAAACT 59.237 50.000 9.18 0.00 40.68 2.66
84 85 3.196685 CCTCACTAGAGCTAGGCAAACTT 59.803 47.826 9.18 0.00 40.68 2.66
85 86 4.323104 CCTCACTAGAGCTAGGCAAACTTT 60.323 45.833 9.18 0.00 40.68 2.66
86 87 5.105310 CCTCACTAGAGCTAGGCAAACTTTA 60.105 44.000 9.18 0.00 40.68 1.85
87 88 6.407525 CCTCACTAGAGCTAGGCAAACTTTAT 60.408 42.308 9.18 0.00 40.68 1.40
88 89 6.341316 TCACTAGAGCTAGGCAAACTTTATG 58.659 40.000 9.18 0.00 37.49 1.90
89 90 5.525378 CACTAGAGCTAGGCAAACTTTATGG 59.475 44.000 9.18 0.00 37.49 2.74
90 91 4.576330 AGAGCTAGGCAAACTTTATGGT 57.424 40.909 0.00 0.00 0.00 3.55
91 92 5.693769 AGAGCTAGGCAAACTTTATGGTA 57.306 39.130 0.00 0.00 0.00 3.25
92 93 5.675538 AGAGCTAGGCAAACTTTATGGTAG 58.324 41.667 0.00 0.00 0.00 3.18
93 94 5.189934 AGAGCTAGGCAAACTTTATGGTAGT 59.810 40.000 0.00 0.00 0.00 2.73
94 95 6.383147 AGAGCTAGGCAAACTTTATGGTAGTA 59.617 38.462 0.00 0.00 0.00 1.82
95 96 6.954232 AGCTAGGCAAACTTTATGGTAGTAA 58.046 36.000 0.00 0.00 0.00 2.24
96 97 6.822170 AGCTAGGCAAACTTTATGGTAGTAAC 59.178 38.462 0.00 0.00 0.00 2.50
97 98 6.238022 GCTAGGCAAACTTTATGGTAGTAACG 60.238 42.308 0.00 0.00 0.00 3.18
98 99 4.939439 AGGCAAACTTTATGGTAGTAACGG 59.061 41.667 0.00 0.00 0.00 4.44
99 100 4.696877 GGCAAACTTTATGGTAGTAACGGT 59.303 41.667 0.00 0.00 0.00 4.83
100 101 5.163824 GGCAAACTTTATGGTAGTAACGGTC 60.164 44.000 0.00 0.00 0.00 4.79
101 102 5.445010 GCAAACTTTATGGTAGTAACGGTCG 60.445 44.000 0.00 0.00 0.00 4.79
102 103 4.376340 ACTTTATGGTAGTAACGGTCGG 57.624 45.455 0.00 0.00 0.00 4.79
103 104 3.131046 ACTTTATGGTAGTAACGGTCGGG 59.869 47.826 0.00 0.00 0.00 5.14
104 105 2.727123 TATGGTAGTAACGGTCGGGA 57.273 50.000 0.00 0.00 0.00 5.14
105 106 1.851304 ATGGTAGTAACGGTCGGGAA 58.149 50.000 0.00 0.00 0.00 3.97
106 107 1.176527 TGGTAGTAACGGTCGGGAAG 58.823 55.000 0.00 0.00 0.00 3.46
107 108 1.177401 GGTAGTAACGGTCGGGAAGT 58.823 55.000 0.00 0.00 0.00 3.01
108 109 1.133216 GGTAGTAACGGTCGGGAAGTC 59.867 57.143 0.00 0.00 0.00 3.01
109 110 1.812571 GTAGTAACGGTCGGGAAGTCA 59.187 52.381 0.00 0.00 0.00 3.41
110 111 1.553706 AGTAACGGTCGGGAAGTCAT 58.446 50.000 0.00 0.00 0.00 3.06
111 112 1.475682 AGTAACGGTCGGGAAGTCATC 59.524 52.381 0.00 0.00 0.00 2.92
112 113 0.452987 TAACGGTCGGGAAGTCATCG 59.547 55.000 0.00 0.00 0.00 3.84
113 114 1.530013 AACGGTCGGGAAGTCATCGT 61.530 55.000 0.00 0.00 0.00 3.73
114 115 1.516386 CGGTCGGGAAGTCATCGTG 60.516 63.158 0.00 0.00 0.00 4.35
115 116 1.810030 GGTCGGGAAGTCATCGTGC 60.810 63.158 0.00 0.00 0.00 5.34
116 117 2.158959 GTCGGGAAGTCATCGTGCG 61.159 63.158 0.00 0.00 0.00 5.34
117 118 2.180769 CGGGAAGTCATCGTGCGA 59.819 61.111 0.00 0.00 0.00 5.10
118 119 1.445410 CGGGAAGTCATCGTGCGAA 60.445 57.895 0.00 0.00 0.00 4.70
119 120 1.011968 CGGGAAGTCATCGTGCGAAA 61.012 55.000 0.00 0.00 0.00 3.46
120 121 1.153353 GGGAAGTCATCGTGCGAAAA 58.847 50.000 0.00 0.00 0.00 2.29
121 122 1.737793 GGGAAGTCATCGTGCGAAAAT 59.262 47.619 0.00 0.00 0.00 1.82
122 123 2.223044 GGGAAGTCATCGTGCGAAAATC 60.223 50.000 0.00 0.00 0.00 2.17
123 124 2.673368 GGAAGTCATCGTGCGAAAATCT 59.327 45.455 0.00 0.00 0.00 2.40
124 125 3.242123 GGAAGTCATCGTGCGAAAATCTC 60.242 47.826 0.00 0.00 0.00 2.75
125 126 2.959516 AGTCATCGTGCGAAAATCTCA 58.040 42.857 0.00 0.00 0.00 3.27
126 127 3.525537 AGTCATCGTGCGAAAATCTCAT 58.474 40.909 0.00 0.00 0.00 2.90
127 128 4.682787 AGTCATCGTGCGAAAATCTCATA 58.317 39.130 0.00 0.00 0.00 2.15
128 129 4.742167 AGTCATCGTGCGAAAATCTCATAG 59.258 41.667 0.00 0.00 0.00 2.23
129 130 4.051237 TCATCGTGCGAAAATCTCATAGG 58.949 43.478 0.00 0.00 0.00 2.57
130 131 3.793797 TCGTGCGAAAATCTCATAGGA 57.206 42.857 0.00 0.00 0.00 2.94
131 132 3.444916 TCGTGCGAAAATCTCATAGGAC 58.555 45.455 0.00 0.00 0.00 3.85
132 133 2.540101 CGTGCGAAAATCTCATAGGACC 59.460 50.000 0.00 0.00 0.00 4.46
133 134 3.531538 GTGCGAAAATCTCATAGGACCA 58.468 45.455 0.00 0.00 0.00 4.02
134 135 3.557595 GTGCGAAAATCTCATAGGACCAG 59.442 47.826 0.00 0.00 0.00 4.00
135 136 2.545946 GCGAAAATCTCATAGGACCAGC 59.454 50.000 0.00 0.00 0.00 4.85
136 137 2.797156 CGAAAATCTCATAGGACCAGCG 59.203 50.000 0.00 0.00 0.00 5.18
137 138 2.246719 AAATCTCATAGGACCAGCGC 57.753 50.000 0.00 0.00 0.00 5.92
138 139 1.418334 AATCTCATAGGACCAGCGCT 58.582 50.000 2.64 2.64 0.00 5.92
139 140 0.965439 ATCTCATAGGACCAGCGCTC 59.035 55.000 7.13 0.00 0.00 5.03
140 141 1.109920 TCTCATAGGACCAGCGCTCC 61.110 60.000 7.13 6.48 0.00 4.70
141 142 2.093537 CTCATAGGACCAGCGCTCCC 62.094 65.000 7.13 9.67 0.00 4.30
142 143 3.227276 ATAGGACCAGCGCTCCCG 61.227 66.667 7.13 0.00 37.57 5.14
143 144 3.733507 ATAGGACCAGCGCTCCCGA 62.734 63.158 7.13 6.08 36.29 5.14
144 145 3.949885 TAGGACCAGCGCTCCCGAA 62.950 63.158 7.13 0.43 36.29 4.30
145 146 4.162690 GGACCAGCGCTCCCGAAT 62.163 66.667 7.13 0.00 36.29 3.34
146 147 2.792947 GGACCAGCGCTCCCGAATA 61.793 63.158 7.13 0.00 36.29 1.75
147 148 1.300233 GACCAGCGCTCCCGAATAG 60.300 63.158 7.13 0.00 36.29 1.73
148 149 2.663188 CCAGCGCTCCCGAATAGC 60.663 66.667 7.13 0.00 36.29 2.97
149 150 2.106938 CAGCGCTCCCGAATAGCA 59.893 61.111 7.13 0.00 40.08 3.49
150 151 1.521457 CAGCGCTCCCGAATAGCAA 60.521 57.895 7.13 0.00 40.08 3.91
151 152 0.882042 CAGCGCTCCCGAATAGCAAT 60.882 55.000 7.13 0.00 40.08 3.56
152 153 0.601311 AGCGCTCCCGAATAGCAATC 60.601 55.000 2.64 0.00 40.08 2.67
153 154 1.891060 GCGCTCCCGAATAGCAATCG 61.891 60.000 0.00 0.00 40.08 3.34
154 155 0.597637 CGCTCCCGAATAGCAATCGT 60.598 55.000 5.33 0.00 40.08 3.73
170 171 2.363788 TCGTCGAGGATCAAACTTGG 57.636 50.000 3.17 0.00 33.17 3.61
180 181 6.183360 CGAGGATCAAACTTGGAAGACATTAC 60.183 42.308 0.00 0.00 33.17 1.89
182 183 6.881602 AGGATCAAACTTGGAAGACATTACTC 59.118 38.462 0.00 0.00 0.00 2.59
186 187 7.918076 TCAAACTTGGAAGACATTACTCCTAT 58.082 34.615 0.00 0.00 0.00 2.57
188 189 8.454106 CAAACTTGGAAGACATTACTCCTATTG 58.546 37.037 0.00 0.00 0.00 1.90
193 194 5.602978 GGAAGACATTACTCCTATTGAGGGA 59.397 44.000 0.00 0.00 46.01 4.20
197 198 6.617371 AGACATTACTCCTATTGAGGGACATT 59.383 38.462 0.00 0.00 46.01 2.71
211 212 2.069465 GACATTGCCGCAACCACACA 62.069 55.000 8.25 0.00 0.00 3.72
212 213 1.289694 CATTGCCGCAACCACACAT 59.710 52.632 8.25 0.00 0.00 3.21
237 238 5.121298 CCTTAACCAAGACGCTAAACCTAAC 59.879 44.000 0.00 0.00 33.20 2.34
240 241 4.062991 ACCAAGACGCTAAACCTAACAAG 58.937 43.478 0.00 0.00 0.00 3.16
244 245 3.006537 AGACGCTAAACCTAACAAGAGCA 59.993 43.478 0.00 0.00 0.00 4.26
249 250 4.142795 GCTAAACCTAACAAGAGCAAGAGC 60.143 45.833 0.00 0.00 42.56 4.09
250 251 3.492102 AACCTAACAAGAGCAAGAGCA 57.508 42.857 0.00 0.00 45.49 4.26
254 255 0.892814 AACAAGAGCAAGAGCAGGGC 60.893 55.000 0.00 0.00 45.49 5.19
285 286 4.444081 AGGGTCCGAGGTCCTCCG 62.444 72.222 13.54 7.10 39.05 4.63
320 321 1.274703 AAGGCCATCGGATGTGGAGT 61.275 55.000 16.29 0.00 39.12 3.85
323 324 1.146930 CCATCGGATGTGGAGTGGG 59.853 63.158 16.29 0.00 39.12 4.61
360 361 1.439543 TGGGAGGAGGAGGAAACCTAA 59.560 52.381 0.00 0.00 40.73 2.69
366 367 3.523972 AGGAGGAGGAAACCTAATTGTCC 59.476 47.826 0.00 0.00 40.73 4.02
367 368 3.532542 GAGGAGGAAACCTAATTGTCCG 58.467 50.000 0.00 0.00 40.73 4.79
374 375 1.201424 ACCTAATTGTCCGGGAGTCC 58.799 55.000 0.00 0.00 0.00 3.85
396 397 5.362430 TCCTTTTGTGGTGAGCAAAATTAGT 59.638 36.000 4.08 0.00 42.55 2.24
406 407 3.825308 AGCAAAATTAGTGTGACATGCG 58.175 40.909 0.00 0.00 37.61 4.73
407 408 2.916716 GCAAAATTAGTGTGACATGCGG 59.083 45.455 0.00 0.00 0.00 5.69
412 413 2.831685 TAGTGTGACATGCGGACTTT 57.168 45.000 0.00 0.00 0.00 2.66
422 423 6.366332 GTGACATGCGGACTTTAATCCTATAG 59.634 42.308 0.00 0.00 36.52 1.31
445 446 9.912634 ATAGGATCAACAAACTACACAAATTTG 57.087 29.630 16.67 16.67 38.89 2.32
450 451 8.282455 TCAACAAACTACACAAATTTGGACTA 57.718 30.769 21.74 7.22 37.59 2.59
458 459 4.757149 ACACAAATTTGGACTAGAGAGTGC 59.243 41.667 21.74 0.00 43.99 4.40
460 461 6.166279 CACAAATTTGGACTAGAGAGTGCTA 58.834 40.000 21.74 0.00 44.06 3.49
465 466 8.950208 AATTTGGACTAGAGAGTGCTAAATAC 57.050 34.615 0.00 0.00 44.06 1.89
476 477 5.408604 AGAGTGCTAAATACCACACGAAAAG 59.591 40.000 0.00 0.00 38.08 2.27
482 483 7.024768 GCTAAATACCACACGAAAAGCAAATA 58.975 34.615 0.00 0.00 0.00 1.40
485 486 8.825667 AAATACCACACGAAAAGCAAATAATT 57.174 26.923 0.00 0.00 0.00 1.40
539 540 7.672983 TTTTCCTCTAAGATAGTGTGCAAAG 57.327 36.000 0.00 0.00 0.00 2.77
542 543 7.476540 TCCTCTAAGATAGTGTGCAAAGTAA 57.523 36.000 0.00 0.00 0.00 2.24
545 546 7.168302 CCTCTAAGATAGTGTGCAAAGTAATCG 59.832 40.741 0.00 0.00 0.00 3.34
553 554 7.197071 AGTGTGCAAAGTAATCGTTTGAATA 57.803 32.000 0.00 0.00 37.10 1.75
652 653 7.299246 TCCTATAAAAATTCTACTCCCTCCG 57.701 40.000 0.00 0.00 0.00 4.63
655 656 7.656542 CCTATAAAAATTCTACTCCCTCCGTTC 59.343 40.741 0.00 0.00 0.00 3.95
657 658 1.790818 ATTCTACTCCCTCCGTTCCC 58.209 55.000 0.00 0.00 0.00 3.97
661 662 2.517127 TCTACTCCCTCCGTTCCCTAAT 59.483 50.000 0.00 0.00 0.00 1.73
665 666 2.628657 CTCCCTCCGTTCCCTAATGTAG 59.371 54.545 0.00 0.00 0.00 2.74
749 751 4.993705 AAAATCTACAACCTCTGTCCCA 57.006 40.909 0.00 0.00 39.64 4.37
750 752 5.520748 AAAATCTACAACCTCTGTCCCAT 57.479 39.130 0.00 0.00 39.64 4.00
754 756 5.614324 TCTACAACCTCTGTCCCATAATG 57.386 43.478 0.00 0.00 39.64 1.90
758 760 5.745227 ACAACCTCTGTCCCATAATGTAAG 58.255 41.667 0.00 0.00 29.87 2.34
759 761 5.487488 ACAACCTCTGTCCCATAATGTAAGA 59.513 40.000 0.00 0.00 29.87 2.10
761 763 4.099573 ACCTCTGTCCCATAATGTAAGACG 59.900 45.833 0.00 0.00 0.00 4.18
765 767 6.469410 TCTGTCCCATAATGTAAGACGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
766 768 6.938030 TCTGTCCCATAATGTAAGACGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
794 1015 5.480772 ACTCTATTACATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
816 1044 9.856162 GGAGGGAGTAGGATATAAAGTATAGAG 57.144 40.741 0.00 0.00 0.00 2.43
949 1432 4.180946 CCTCTGCTCCGTCGTCCG 62.181 72.222 0.00 0.00 0.00 4.79
973 1459 1.216710 GACCAGCTTGACTCCCTCG 59.783 63.158 0.00 0.00 0.00 4.63
979 1465 4.717629 TTGACTCCCTCGCGCACG 62.718 66.667 8.75 0.00 42.01 5.34
997 1492 4.749310 AGCAACAGGAGCGCGAGG 62.749 66.667 12.10 0.00 37.01 4.63
1168 1665 5.743872 CCGCTGATTGGCTTAGTTTAATTTC 59.256 40.000 0.00 0.00 0.00 2.17
1207 1708 0.376852 TAAATCGTTGATGCGCTGCC 59.623 50.000 9.73 0.00 0.00 4.85
1299 1802 4.379394 GCGCATGTTTGTTAGGATTTCAGA 60.379 41.667 0.30 0.00 0.00 3.27
1304 1807 6.024552 TGTTTGTTAGGATTTCAGATTGCC 57.975 37.500 0.00 0.00 0.00 4.52
1305 1808 5.774690 TGTTTGTTAGGATTTCAGATTGCCT 59.225 36.000 0.00 0.00 0.00 4.75
1324 1854 1.928706 TTGCGTTTATTCGGGCAGGC 61.929 55.000 0.00 0.00 36.66 4.85
1340 1870 1.142870 CAGGCCCGGGAAATTATCTGA 59.857 52.381 29.31 0.00 0.00 3.27
1353 1883 8.355913 GGGAAATTATCTGATGAAGTTTGGATC 58.644 37.037 0.00 0.00 0.00 3.36
1361 1891 2.066262 TGAAGTTTGGATCGCTCGAAC 58.934 47.619 0.00 0.00 0.00 3.95
1407 1937 7.254863 CGTTTTTAGCAAACTCTGTAGGGTTTA 60.255 37.037 9.39 0.00 34.44 2.01
1414 1945 6.516693 GCAAACTCTGTAGGGTTTATTTTGCT 60.517 38.462 9.39 0.00 41.82 3.91
1434 1965 1.444383 GGCTGCGCCTAAAAGTTGC 60.444 57.895 4.18 0.00 46.69 4.17
1448 1979 2.610438 AGTTGCATCCAAGGGTTCAT 57.390 45.000 0.00 0.00 0.00 2.57
1556 2095 7.064847 AGACTTGAGTAGTAGACGAGTTGTATG 59.935 40.741 0.00 0.00 37.17 2.39
1641 2180 3.003275 ACAGTCCATGCTTTGTTGTAACG 59.997 43.478 0.00 0.00 0.00 3.18
1649 2188 2.916716 GCTTTGTTGTAACGCATGGATG 59.083 45.455 0.00 0.00 0.00 3.51
1704 2243 9.913310 CTCCCTGTGATAGAGTAGAATATATCA 57.087 37.037 0.00 0.00 32.44 2.15
1729 2297 7.414222 AATGATGAGACATTGCCTTTTATGT 57.586 32.000 0.00 0.00 38.76 2.29
1810 2446 3.430218 GGTTCTGAAATAGATCGATGGCG 59.570 47.826 0.54 0.00 34.80 5.69
1929 2597 4.415881 TCAAGCAGTGGAAACTGAACTA 57.584 40.909 9.97 0.00 39.99 2.24
1936 2604 2.032290 GTGGAAACTGAACTAACACGCC 60.032 50.000 0.00 0.00 0.00 5.68
2150 2818 2.359900 GAAATCGACATTGAGCCCACT 58.640 47.619 0.00 0.00 0.00 4.00
2254 2930 7.384115 TGAATTTCTTTCGATCTTTCTACGTGT 59.616 33.333 0.00 0.00 37.13 4.49
2255 2931 6.448053 TTTCTTTCGATCTTTCTACGTGTG 57.552 37.500 0.00 0.00 0.00 3.82
2257 2933 5.526115 TCTTTCGATCTTTCTACGTGTGTT 58.474 37.500 0.00 0.00 0.00 3.32
2258 2934 6.671190 TCTTTCGATCTTTCTACGTGTGTTA 58.329 36.000 0.00 0.00 0.00 2.41
2259 2935 6.580041 TCTTTCGATCTTTCTACGTGTGTTAC 59.420 38.462 0.00 0.00 0.00 2.50
2260 2936 5.618056 TCGATCTTTCTACGTGTGTTACT 57.382 39.130 0.00 0.00 0.00 2.24
2261 2937 5.388111 TCGATCTTTCTACGTGTGTTACTG 58.612 41.667 0.00 0.00 0.00 2.74
2262 2938 5.049198 TCGATCTTTCTACGTGTGTTACTGT 60.049 40.000 0.00 0.00 0.00 3.55
2263 2939 5.059343 CGATCTTTCTACGTGTGTTACTGTG 59.941 44.000 0.00 0.00 0.00 3.66
2264 2940 5.252969 TCTTTCTACGTGTGTTACTGTGT 57.747 39.130 0.00 0.00 0.00 3.72
2265 2941 5.653507 TCTTTCTACGTGTGTTACTGTGTT 58.346 37.500 0.00 0.00 0.00 3.32
2266 2942 6.794374 TCTTTCTACGTGTGTTACTGTGTTA 58.206 36.000 0.00 0.00 0.00 2.41
2267 2943 7.428020 TCTTTCTACGTGTGTTACTGTGTTAT 58.572 34.615 0.00 0.00 0.00 1.89
2268 2944 8.567104 TCTTTCTACGTGTGTTACTGTGTTATA 58.433 33.333 0.00 0.00 0.00 0.98
2269 2945 9.350357 CTTTCTACGTGTGTTACTGTGTTATAT 57.650 33.333 0.00 0.00 0.00 0.86
2270 2946 8.677871 TTCTACGTGTGTTACTGTGTTATATG 57.322 34.615 0.00 0.00 0.00 1.78
2271 2947 7.819644 TCTACGTGTGTTACTGTGTTATATGT 58.180 34.615 0.00 0.00 0.00 2.29
2272 2948 8.945057 TCTACGTGTGTTACTGTGTTATATGTA 58.055 33.333 0.00 0.00 0.00 2.29
2295 2981 2.688507 TGTTCTGCTCGAATGAACTCC 58.311 47.619 18.86 2.20 40.27 3.85
2327 3013 2.166870 TCGTATCTGTAACAATGGCGGT 59.833 45.455 0.00 0.00 0.00 5.68
2343 3029 2.676342 GGCGGTGGATACTTTGTAAGTG 59.324 50.000 2.45 0.00 42.84 3.16
2359 3045 6.048732 TGTAAGTGTCTAGCATTTGGATGA 57.951 37.500 5.56 0.00 35.16 2.92
2363 3049 2.213499 GTCTAGCATTTGGATGACCCG 58.787 52.381 0.00 0.00 37.93 5.28
2370 3056 3.206150 CATTTGGATGACCCGGACTAAG 58.794 50.000 0.73 0.00 37.93 2.18
2494 3180 2.129555 TTGTCCTTGCTCTGAGGGGC 62.130 60.000 6.83 1.45 34.93 5.80
2501 3187 2.359967 GCTCTGAGGGGCGGTTACT 61.360 63.158 6.83 0.00 0.00 2.24
2502 3188 1.041447 GCTCTGAGGGGCGGTTACTA 61.041 60.000 6.83 0.00 0.00 1.82
2503 3189 1.033574 CTCTGAGGGGCGGTTACTAG 58.966 60.000 0.00 0.00 0.00 2.57
2504 3190 0.333993 TCTGAGGGGCGGTTACTAGT 59.666 55.000 0.00 0.00 0.00 2.57
2556 3242 3.244700 CCTGAGAGAAGTGACCATTGGTT 60.245 47.826 10.29 0.00 35.25 3.67
2582 3268 0.817013 AACCTGTGTTGGTGTTGCAG 59.183 50.000 0.00 0.00 40.73 4.41
2680 3368 1.053424 ACTCAAGTTTACCCGCCTCA 58.947 50.000 0.00 0.00 0.00 3.86
2712 3400 3.055591 CTGCTGCGTAGTAAGATCCATG 58.944 50.000 1.53 0.00 0.00 3.66
2803 3493 7.008941 AGGGCTAAATGCAGATAGATTGATTT 58.991 34.615 11.62 0.00 45.15 2.17
2805 3495 7.088905 GGCTAAATGCAGATAGATTGATTTGG 58.911 38.462 11.62 0.00 45.15 3.28
2806 3496 7.088905 GCTAAATGCAGATAGATTGATTTGGG 58.911 38.462 11.62 0.00 42.31 4.12
2807 3497 6.415206 AAATGCAGATAGATTGATTTGGGG 57.585 37.500 0.00 0.00 0.00 4.96
2808 3498 4.524802 TGCAGATAGATTGATTTGGGGT 57.475 40.909 0.00 0.00 0.00 4.95
2814 3530 1.472480 AGATTGATTTGGGGTTTCGCG 59.528 47.619 0.00 0.00 0.00 5.87
2855 3571 4.163649 TGATCTGAGATGGCAGAATCAGTT 59.836 41.667 19.60 14.32 46.94 3.16
2884 3605 3.978876 AGCCACTTGGGTTACATCC 57.021 52.632 0.00 0.00 44.81 3.51
2906 3627 9.956720 CATCCACCTCAAATGAAAAATATACTC 57.043 33.333 0.00 0.00 0.00 2.59
2907 3628 8.208718 TCCACCTCAAATGAAAAATATACTCG 57.791 34.615 0.00 0.00 0.00 4.18
2951 3672 5.164620 TCTTTGTGTCCTGCAATCTGATA 57.835 39.130 0.00 0.00 0.00 2.15
2954 3675 4.128925 TGTGTCCTGCAATCTGATACTC 57.871 45.455 0.00 0.00 0.00 2.59
2955 3676 3.118629 TGTGTCCTGCAATCTGATACTCC 60.119 47.826 0.00 0.00 0.00 3.85
2956 3677 2.435805 TGTCCTGCAATCTGATACTCCC 59.564 50.000 0.00 0.00 0.00 4.30
2957 3678 2.703007 GTCCTGCAATCTGATACTCCCT 59.297 50.000 0.00 0.00 0.00 4.20
2958 3679 2.968574 TCCTGCAATCTGATACTCCCTC 59.031 50.000 0.00 0.00 0.00 4.30
2959 3680 2.038295 CCTGCAATCTGATACTCCCTCC 59.962 54.545 0.00 0.00 0.00 4.30
2960 3681 1.688735 TGCAATCTGATACTCCCTCCG 59.311 52.381 0.00 0.00 0.00 4.63
2961 3682 1.689273 GCAATCTGATACTCCCTCCGT 59.311 52.381 0.00 0.00 0.00 4.69
2962 3683 2.103263 GCAATCTGATACTCCCTCCGTT 59.897 50.000 0.00 0.00 0.00 4.44
2963 3684 3.800604 GCAATCTGATACTCCCTCCGTTC 60.801 52.174 0.00 0.00 0.00 3.95
2964 3685 2.068834 TCTGATACTCCCTCCGTTCC 57.931 55.000 0.00 0.00 0.00 3.62
2965 3686 1.569548 TCTGATACTCCCTCCGTTCCT 59.430 52.381 0.00 0.00 0.00 3.36
2966 3687 2.781757 TCTGATACTCCCTCCGTTCCTA 59.218 50.000 0.00 0.00 0.00 2.94
2967 3688 3.203710 TCTGATACTCCCTCCGTTCCTAA 59.796 47.826 0.00 0.00 0.00 2.69
2968 3689 3.958798 CTGATACTCCCTCCGTTCCTAAA 59.041 47.826 0.00 0.00 0.00 1.85
2970 3691 4.344102 TGATACTCCCTCCGTTCCTAAATG 59.656 45.833 0.00 0.00 0.00 2.32
2971 3692 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
2972 3693 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
2973 3694 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
2974 3695 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
2975 3696 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
2976 3697 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
2977 3698 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
2978 3699 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2979 3700 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2980 3701 6.313164 CCTCCGTTCCTAAATGTAAGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
2981 3702 7.001099 TCCGTTCCTAAATGTAAGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
2982 3703 8.125978 TCCGTTCCTAAATGTAAGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
2983 3704 8.248945 TCCGTTCCTAAATGTAAGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
2984 3705 8.248945 CCGTTCCTAAATGTAAGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
2985 3706 9.291664 CGTTCCTAAATGTAAGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
2993 3714 9.660180 AATGTAAGTCTTTCTAGAGATTTCCAC 57.340 33.333 0.00 0.00 29.76 4.02
2994 3715 8.423906 TGTAAGTCTTTCTAGAGATTTCCACT 57.576 34.615 0.00 0.00 29.76 4.00
2995 3716 9.529823 TGTAAGTCTTTCTAGAGATTTCCACTA 57.470 33.333 0.00 0.00 29.76 2.74
2996 3717 9.791820 GTAAGTCTTTCTAGAGATTTCCACTAC 57.208 37.037 0.00 0.00 29.76 2.73
2997 3718 7.090953 AGTCTTTCTAGAGATTTCCACTACG 57.909 40.000 0.00 0.00 0.00 3.51
2998 3719 6.095720 AGTCTTTCTAGAGATTTCCACTACGG 59.904 42.308 0.00 0.00 0.00 4.02
2999 3720 6.095160 GTCTTTCTAGAGATTTCCACTACGGA 59.905 42.308 0.00 0.00 44.40 4.69
3000 3721 5.831702 TTCTAGAGATTTCCACTACGGAC 57.168 43.478 0.00 0.00 46.36 4.79
3001 3722 5.113446 TCTAGAGATTTCCACTACGGACT 57.887 43.478 0.00 0.00 46.36 3.85
3002 3723 6.244552 TCTAGAGATTTCCACTACGGACTA 57.755 41.667 0.00 0.00 46.36 2.59
3003 3724 6.054295 TCTAGAGATTTCCACTACGGACTAC 58.946 44.000 0.00 0.00 46.36 2.73
3004 3725 4.597004 AGAGATTTCCACTACGGACTACA 58.403 43.478 0.00 0.00 46.36 2.74
3005 3726 5.202004 AGAGATTTCCACTACGGACTACAT 58.798 41.667 0.00 0.00 46.36 2.29
3006 3727 6.363065 AGAGATTTCCACTACGGACTACATA 58.637 40.000 0.00 0.00 46.36 2.29
3007 3728 7.005296 AGAGATTTCCACTACGGACTACATAT 58.995 38.462 0.00 0.00 46.36 1.78
3008 3729 6.982852 AGATTTCCACTACGGACTACATATG 58.017 40.000 0.00 0.00 46.36 1.78
3009 3730 6.776116 AGATTTCCACTACGGACTACATATGA 59.224 38.462 10.38 0.00 46.36 2.15
3010 3731 5.762825 TTCCACTACGGACTACATATGAC 57.237 43.478 10.38 0.00 46.36 3.06
3011 3732 3.811497 TCCACTACGGACTACATATGACG 59.189 47.826 10.38 8.12 39.64 4.35
3012 3733 3.562973 CCACTACGGACTACATATGACGT 59.437 47.826 10.38 13.07 36.56 4.34
3013 3734 4.751600 CCACTACGGACTACATATGACGTA 59.248 45.833 10.38 13.45 36.56 3.57
3014 3735 5.237127 CCACTACGGACTACATATGACGTAA 59.763 44.000 10.38 0.00 36.54 3.18
3015 3736 6.238456 CCACTACGGACTACATATGACGTAAA 60.238 42.308 10.38 0.00 36.54 2.01
3016 3737 7.188834 CACTACGGACTACATATGACGTAAAA 58.811 38.462 10.38 0.00 36.54 1.52
3017 3738 7.859377 CACTACGGACTACATATGACGTAAAAT 59.141 37.037 10.38 3.02 36.54 1.82
3018 3739 7.859377 ACTACGGACTACATATGACGTAAAATG 59.141 37.037 10.38 6.83 36.54 2.32
3019 3740 6.798482 ACGGACTACATATGACGTAAAATGA 58.202 36.000 10.38 0.00 32.30 2.57
3020 3741 6.916387 ACGGACTACATATGACGTAAAATGAG 59.084 38.462 10.38 6.16 32.30 2.90
3021 3742 6.916387 CGGACTACATATGACGTAAAATGAGT 59.084 38.462 10.38 8.47 0.00 3.41
3022 3743 7.096599 CGGACTACATATGACGTAAAATGAGTG 60.097 40.741 10.38 3.51 0.00 3.51
3023 3744 7.919091 GGACTACATATGACGTAAAATGAGTGA 59.081 37.037 10.38 0.00 0.00 3.41
3024 3745 8.858003 ACTACATATGACGTAAAATGAGTGAG 57.142 34.615 10.38 5.03 0.00 3.51
3025 3746 8.467598 ACTACATATGACGTAAAATGAGTGAGT 58.532 33.333 10.38 5.48 0.00 3.41
3026 3747 7.757097 ACATATGACGTAAAATGAGTGAGTC 57.243 36.000 10.38 0.00 0.00 3.36
3027 3748 6.472486 ACATATGACGTAAAATGAGTGAGTCG 59.528 38.462 10.38 0.00 0.00 4.18
3028 3749 4.492791 TGACGTAAAATGAGTGAGTCGA 57.507 40.909 0.00 0.00 0.00 4.20
3029 3750 4.224433 TGACGTAAAATGAGTGAGTCGAC 58.776 43.478 7.70 7.70 0.00 4.20
3030 3751 4.224433 GACGTAAAATGAGTGAGTCGACA 58.776 43.478 19.50 0.00 0.00 4.35
3031 3752 3.979495 ACGTAAAATGAGTGAGTCGACAC 59.021 43.478 19.50 12.69 40.60 3.67
3042 3763 1.440708 AGTCGACACTCAGTAGTCCG 58.559 55.000 19.50 0.00 31.97 4.79
3043 3764 0.179194 GTCGACACTCAGTAGTCCGC 60.179 60.000 11.55 0.00 31.97 5.54
3044 3765 0.604511 TCGACACTCAGTAGTCCGCA 60.605 55.000 2.86 0.00 31.97 5.69
3045 3766 0.452184 CGACACTCAGTAGTCCGCAT 59.548 55.000 2.86 0.00 31.97 4.73
3046 3767 1.135373 CGACACTCAGTAGTCCGCATT 60.135 52.381 2.86 0.00 31.97 3.56
3047 3768 2.263077 GACACTCAGTAGTCCGCATTG 58.737 52.381 0.00 0.00 31.97 2.82
3048 3769 1.893137 ACACTCAGTAGTCCGCATTGA 59.107 47.619 0.00 0.00 31.97 2.57
3049 3770 2.299013 ACACTCAGTAGTCCGCATTGAA 59.701 45.455 0.00 0.00 31.97 2.69
3050 3771 3.244078 ACACTCAGTAGTCCGCATTGAAA 60.244 43.478 0.00 0.00 31.97 2.69
3051 3772 3.935203 CACTCAGTAGTCCGCATTGAAAT 59.065 43.478 0.00 0.00 31.97 2.17
3052 3773 4.033358 CACTCAGTAGTCCGCATTGAAATC 59.967 45.833 0.00 0.00 31.97 2.17
3053 3774 4.081420 ACTCAGTAGTCCGCATTGAAATCT 60.081 41.667 0.00 0.00 0.00 2.40
3054 3775 4.433615 TCAGTAGTCCGCATTGAAATCTC 58.566 43.478 0.00 0.00 0.00 2.75
3055 3776 4.160439 TCAGTAGTCCGCATTGAAATCTCT 59.840 41.667 0.00 0.00 0.00 3.10
3056 3777 5.359860 TCAGTAGTCCGCATTGAAATCTCTA 59.640 40.000 0.00 0.00 0.00 2.43
3057 3778 6.042777 CAGTAGTCCGCATTGAAATCTCTAA 58.957 40.000 0.00 0.00 0.00 2.10
3058 3779 6.535150 CAGTAGTCCGCATTGAAATCTCTAAA 59.465 38.462 0.00 0.00 0.00 1.85
3059 3780 7.064609 CAGTAGTCCGCATTGAAATCTCTAAAA 59.935 37.037 0.00 0.00 0.00 1.52
3060 3781 6.817765 AGTCCGCATTGAAATCTCTAAAAA 57.182 33.333 0.00 0.00 0.00 1.94
3081 3802 6.385649 AAAAGACTTGCATTTACGAAAGGA 57.614 33.333 0.00 0.00 0.00 3.36
3082 3803 5.613358 AAGACTTGCATTTACGAAAGGAG 57.387 39.130 0.00 0.00 0.00 3.69
3083 3804 4.003648 AGACTTGCATTTACGAAAGGAGG 58.996 43.478 0.00 0.00 0.00 4.30
3084 3805 3.081804 ACTTGCATTTACGAAAGGAGGG 58.918 45.455 0.00 0.00 0.00 4.30
3085 3806 3.244770 ACTTGCATTTACGAAAGGAGGGA 60.245 43.478 0.00 0.00 0.00 4.20
3086 3807 2.985896 TGCATTTACGAAAGGAGGGAG 58.014 47.619 0.00 0.00 0.00 4.30
3087 3808 2.304761 TGCATTTACGAAAGGAGGGAGT 59.695 45.455 0.00 0.00 0.00 3.85
3088 3809 3.516300 TGCATTTACGAAAGGAGGGAGTA 59.484 43.478 0.00 0.00 0.00 2.59
3089 3810 4.163458 TGCATTTACGAAAGGAGGGAGTAT 59.837 41.667 0.00 0.00 0.00 2.12
3090 3811 5.123936 GCATTTACGAAAGGAGGGAGTATT 58.876 41.667 0.00 0.00 0.00 1.89
3091 3812 6.126997 TGCATTTACGAAAGGAGGGAGTATTA 60.127 38.462 0.00 0.00 0.00 0.98
3092 3813 6.935208 GCATTTACGAAAGGAGGGAGTATTAT 59.065 38.462 0.00 0.00 0.00 1.28
3093 3814 7.444487 GCATTTACGAAAGGAGGGAGTATTATT 59.556 37.037 0.00 0.00 0.00 1.40
3094 3815 8.989980 CATTTACGAAAGGAGGGAGTATTATTC 58.010 37.037 0.00 0.00 0.00 1.75
3095 3816 7.909485 TTACGAAAGGAGGGAGTATTATTCT 57.091 36.000 0.00 0.00 0.00 2.40
3096 3817 6.163135 ACGAAAGGAGGGAGTATTATTCTG 57.837 41.667 0.00 0.00 0.00 3.02
3097 3818 4.991687 CGAAAGGAGGGAGTATTATTCTGC 59.008 45.833 0.00 0.00 0.00 4.26
3098 3819 5.221541 CGAAAGGAGGGAGTATTATTCTGCT 60.222 44.000 0.00 0.00 0.00 4.24
3099 3820 5.816955 AAGGAGGGAGTATTATTCTGCTC 57.183 43.478 0.00 0.00 0.00 4.26
3100 3821 5.086598 AGGAGGGAGTATTATTCTGCTCT 57.913 43.478 0.00 0.00 0.00 4.09
3101 3822 6.220881 AGGAGGGAGTATTATTCTGCTCTA 57.779 41.667 0.00 0.00 0.00 2.43
3107 3828 6.375377 GGAGTATTATTCTGCTCTAGACACG 58.625 44.000 0.00 0.00 34.43 4.49
3113 3834 3.060736 TCTGCTCTAGACACGAGAACT 57.939 47.619 0.00 0.00 0.00 3.01
3120 3841 5.335035 GCTCTAGACACGAGAACTAGTGTTT 60.335 44.000 18.32 15.74 46.68 2.83
3175 3896 3.771577 TTCAGAGAAGAACCAACCCTC 57.228 47.619 0.00 0.00 0.00 4.30
3178 3899 3.173965 CAGAGAAGAACCAACCCTCCTA 58.826 50.000 0.00 0.00 0.00 2.94
3191 3912 3.659841 ACCCTCCTAAGATCTTTCCTCC 58.340 50.000 14.36 0.00 0.00 4.30
3229 3950 0.753262 AGCTACGGGCCTATGACTTG 59.247 55.000 0.84 0.00 43.05 3.16
3239 3963 4.074970 GGCCTATGACTTGGATAACCATG 58.925 47.826 0.00 3.64 46.34 3.66
3244 3968 4.299586 TGACTTGGATAACCATGCAGAA 57.700 40.909 4.98 0.00 46.34 3.02
3296 4020 7.228308 CCTCCCTCACATATTTTCTCTTCATTC 59.772 40.741 0.00 0.00 0.00 2.67
3323 4047 2.145536 GCAGGGAGCAAACAAAAATGG 58.854 47.619 0.00 0.00 44.79 3.16
3382 4106 6.889301 ACCTAACCCAAAGCTAAACTAAAC 57.111 37.500 0.00 0.00 0.00 2.01
3390 4114 5.461526 CAAAGCTAAACTAAACCAAGAGGC 58.538 41.667 0.00 0.00 39.06 4.70
3391 4115 3.687125 AGCTAAACTAAACCAAGAGGCC 58.313 45.455 0.00 0.00 39.06 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.110482 GCTTGTAATCGTCGTTAGATGGT 58.890 43.478 0.00 0.00 34.23 3.55
3 4 4.798907 CAGTGCTTGTAATCGTCGTTAGAT 59.201 41.667 0.00 0.00 0.00 1.98
4 5 4.163552 CAGTGCTTGTAATCGTCGTTAGA 58.836 43.478 0.00 0.00 0.00 2.10
5 6 3.303495 CCAGTGCTTGTAATCGTCGTTAG 59.697 47.826 0.00 0.00 0.00 2.34
6 7 3.057386 TCCAGTGCTTGTAATCGTCGTTA 60.057 43.478 0.00 0.00 0.00 3.18
7 8 2.066262 CCAGTGCTTGTAATCGTCGTT 58.934 47.619 0.00 0.00 0.00 3.85
8 9 1.271379 TCCAGTGCTTGTAATCGTCGT 59.729 47.619 0.00 0.00 0.00 4.34
9 10 1.920574 CTCCAGTGCTTGTAATCGTCG 59.079 52.381 0.00 0.00 0.00 5.12
10 11 3.119459 TCTCTCCAGTGCTTGTAATCGTC 60.119 47.826 0.00 0.00 0.00 4.20
11 12 2.826128 TCTCTCCAGTGCTTGTAATCGT 59.174 45.455 0.00 0.00 0.00 3.73
12 13 3.443037 CTCTCTCCAGTGCTTGTAATCG 58.557 50.000 0.00 0.00 0.00 3.34
13 14 3.194062 GCTCTCTCCAGTGCTTGTAATC 58.806 50.000 0.00 0.00 36.40 1.75
14 15 2.093235 GGCTCTCTCCAGTGCTTGTAAT 60.093 50.000 0.00 0.00 38.87 1.89
15 16 1.276421 GGCTCTCTCCAGTGCTTGTAA 59.724 52.381 0.00 0.00 38.87 2.41
16 17 0.898320 GGCTCTCTCCAGTGCTTGTA 59.102 55.000 0.00 0.00 38.87 2.41
17 18 1.676384 GGCTCTCTCCAGTGCTTGT 59.324 57.895 0.00 0.00 38.87 3.16
18 19 1.447489 CGGCTCTCTCCAGTGCTTG 60.447 63.158 0.00 0.00 38.87 4.01
19 20 1.188219 TTCGGCTCTCTCCAGTGCTT 61.188 55.000 0.00 0.00 38.87 3.91
20 21 1.603236 CTTCGGCTCTCTCCAGTGCT 61.603 60.000 0.00 0.00 38.87 4.40
21 22 1.153667 CTTCGGCTCTCTCCAGTGC 60.154 63.158 0.00 0.00 38.25 4.40
22 23 0.891373 TTCTTCGGCTCTCTCCAGTG 59.109 55.000 0.00 0.00 0.00 3.66
23 24 1.181786 CTTCTTCGGCTCTCTCCAGT 58.818 55.000 0.00 0.00 0.00 4.00
24 25 0.179113 GCTTCTTCGGCTCTCTCCAG 60.179 60.000 0.00 0.00 0.00 3.86
25 26 1.893786 GCTTCTTCGGCTCTCTCCA 59.106 57.895 0.00 0.00 0.00 3.86
26 27 1.226831 CGCTTCTTCGGCTCTCTCC 60.227 63.158 0.00 0.00 0.00 3.71
27 28 1.876263 GCGCTTCTTCGGCTCTCTC 60.876 63.158 0.00 0.00 0.00 3.20
28 29 2.183046 GCGCTTCTTCGGCTCTCT 59.817 61.111 0.00 0.00 0.00 3.10
34 35 1.298157 TGATTGTGGCGCTTCTTCGG 61.298 55.000 7.64 0.00 0.00 4.30
35 36 0.729116 ATGATTGTGGCGCTTCTTCG 59.271 50.000 7.64 0.00 0.00 3.79
36 37 1.267732 CGATGATTGTGGCGCTTCTTC 60.268 52.381 7.64 4.37 0.00 2.87
37 38 0.729116 CGATGATTGTGGCGCTTCTT 59.271 50.000 7.64 0.00 0.00 2.52
38 39 0.391661 ACGATGATTGTGGCGCTTCT 60.392 50.000 7.64 0.00 0.00 2.85
39 40 0.026803 GACGATGATTGTGGCGCTTC 59.973 55.000 7.64 0.79 0.00 3.86
40 41 1.369091 GGACGATGATTGTGGCGCTT 61.369 55.000 7.64 0.00 0.00 4.68
41 42 1.815421 GGACGATGATTGTGGCGCT 60.815 57.895 7.64 0.00 0.00 5.92
42 43 1.766143 GAGGACGATGATTGTGGCGC 61.766 60.000 0.00 0.00 0.00 6.53
43 44 1.154205 GGAGGACGATGATTGTGGCG 61.154 60.000 0.00 0.00 0.00 5.69
44 45 0.815615 GGGAGGACGATGATTGTGGC 60.816 60.000 0.00 0.00 0.00 5.01
45 46 0.833287 AGGGAGGACGATGATTGTGG 59.167 55.000 0.00 0.00 0.00 4.17
46 47 1.482182 TGAGGGAGGACGATGATTGTG 59.518 52.381 0.00 0.00 0.00 3.33
47 48 1.482593 GTGAGGGAGGACGATGATTGT 59.517 52.381 0.00 0.00 0.00 2.71
48 49 1.759445 AGTGAGGGAGGACGATGATTG 59.241 52.381 0.00 0.00 0.00 2.67
49 50 2.166907 AGTGAGGGAGGACGATGATT 57.833 50.000 0.00 0.00 0.00 2.57
50 51 2.443632 TCTAGTGAGGGAGGACGATGAT 59.556 50.000 0.00 0.00 0.00 2.45
51 52 1.844497 TCTAGTGAGGGAGGACGATGA 59.156 52.381 0.00 0.00 0.00 2.92
52 53 2.226330 CTCTAGTGAGGGAGGACGATG 58.774 57.143 0.00 0.00 36.70 3.84
53 54 1.477923 GCTCTAGTGAGGGAGGACGAT 60.478 57.143 0.00 0.00 40.53 3.73
54 55 0.107116 GCTCTAGTGAGGGAGGACGA 60.107 60.000 0.00 0.00 40.53 4.20
55 56 0.106918 AGCTCTAGTGAGGGAGGACG 60.107 60.000 0.00 0.00 40.53 4.79
56 57 2.488347 CCTAGCTCTAGTGAGGGAGGAC 60.488 59.091 0.00 0.00 40.53 3.85
57 58 1.777878 CCTAGCTCTAGTGAGGGAGGA 59.222 57.143 0.00 0.00 40.53 3.71
58 59 1.821666 GCCTAGCTCTAGTGAGGGAGG 60.822 61.905 0.00 0.00 40.53 4.30
59 60 1.133637 TGCCTAGCTCTAGTGAGGGAG 60.134 57.143 0.00 0.00 40.53 4.30
60 61 0.927029 TGCCTAGCTCTAGTGAGGGA 59.073 55.000 0.00 0.00 40.53 4.20
61 62 1.781786 TTGCCTAGCTCTAGTGAGGG 58.218 55.000 0.00 0.00 40.53 4.30
62 63 2.763448 AGTTTGCCTAGCTCTAGTGAGG 59.237 50.000 0.00 0.00 40.53 3.86
63 64 4.464069 AAGTTTGCCTAGCTCTAGTGAG 57.536 45.455 0.00 0.00 42.96 3.51
64 65 4.891992 AAAGTTTGCCTAGCTCTAGTGA 57.108 40.909 0.00 0.00 0.00 3.41
65 66 5.525378 CCATAAAGTTTGCCTAGCTCTAGTG 59.475 44.000 0.00 0.00 0.00 2.74
66 67 5.189934 ACCATAAAGTTTGCCTAGCTCTAGT 59.810 40.000 0.00 0.00 0.00 2.57
67 68 5.675538 ACCATAAAGTTTGCCTAGCTCTAG 58.324 41.667 0.00 0.00 0.00 2.43
68 69 5.693769 ACCATAAAGTTTGCCTAGCTCTA 57.306 39.130 0.00 0.00 0.00 2.43
69 70 4.576330 ACCATAAAGTTTGCCTAGCTCT 57.424 40.909 0.00 0.00 0.00 4.09
70 71 5.429130 ACTACCATAAAGTTTGCCTAGCTC 58.571 41.667 0.00 0.00 0.00 4.09
71 72 5.437191 ACTACCATAAAGTTTGCCTAGCT 57.563 39.130 0.00 0.00 0.00 3.32
72 73 6.238022 CGTTACTACCATAAAGTTTGCCTAGC 60.238 42.308 0.00 0.00 0.00 3.42
73 74 6.257193 CCGTTACTACCATAAAGTTTGCCTAG 59.743 42.308 0.00 0.00 0.00 3.02
74 75 6.108015 CCGTTACTACCATAAAGTTTGCCTA 58.892 40.000 0.00 0.00 0.00 3.93
75 76 4.939439 CCGTTACTACCATAAAGTTTGCCT 59.061 41.667 0.00 0.00 0.00 4.75
76 77 4.696877 ACCGTTACTACCATAAAGTTTGCC 59.303 41.667 0.00 0.00 0.00 4.52
77 78 5.445010 CGACCGTTACTACCATAAAGTTTGC 60.445 44.000 0.00 0.00 0.00 3.68
78 79 5.062558 CCGACCGTTACTACCATAAAGTTTG 59.937 44.000 0.00 0.00 0.00 2.93
79 80 5.170748 CCGACCGTTACTACCATAAAGTTT 58.829 41.667 0.00 0.00 0.00 2.66
80 81 4.381932 CCCGACCGTTACTACCATAAAGTT 60.382 45.833 0.00 0.00 0.00 2.66
81 82 3.131046 CCCGACCGTTACTACCATAAAGT 59.869 47.826 0.00 0.00 0.00 2.66
82 83 3.381272 TCCCGACCGTTACTACCATAAAG 59.619 47.826 0.00 0.00 0.00 1.85
83 84 3.360867 TCCCGACCGTTACTACCATAAA 58.639 45.455 0.00 0.00 0.00 1.40
84 85 3.011566 TCCCGACCGTTACTACCATAA 57.988 47.619 0.00 0.00 0.00 1.90
85 86 2.727123 TCCCGACCGTTACTACCATA 57.273 50.000 0.00 0.00 0.00 2.74
86 87 1.753073 CTTCCCGACCGTTACTACCAT 59.247 52.381 0.00 0.00 0.00 3.55
87 88 1.176527 CTTCCCGACCGTTACTACCA 58.823 55.000 0.00 0.00 0.00 3.25
88 89 1.133216 GACTTCCCGACCGTTACTACC 59.867 57.143 0.00 0.00 0.00 3.18
89 90 1.812571 TGACTTCCCGACCGTTACTAC 59.187 52.381 0.00 0.00 0.00 2.73
90 91 2.198827 TGACTTCCCGACCGTTACTA 57.801 50.000 0.00 0.00 0.00 1.82
91 92 1.475682 GATGACTTCCCGACCGTTACT 59.524 52.381 0.00 0.00 0.00 2.24
92 93 1.796617 CGATGACTTCCCGACCGTTAC 60.797 57.143 0.00 0.00 0.00 2.50
93 94 0.452987 CGATGACTTCCCGACCGTTA 59.547 55.000 0.00 0.00 0.00 3.18
94 95 1.214589 CGATGACTTCCCGACCGTT 59.785 57.895 0.00 0.00 0.00 4.44
95 96 1.975407 ACGATGACTTCCCGACCGT 60.975 57.895 0.00 0.00 0.00 4.83
96 97 1.516386 CACGATGACTTCCCGACCG 60.516 63.158 0.00 0.00 0.00 4.79
97 98 1.810030 GCACGATGACTTCCCGACC 60.810 63.158 0.00 0.00 0.00 4.79
98 99 2.158959 CGCACGATGACTTCCCGAC 61.159 63.158 0.00 0.00 0.00 4.79
99 100 1.868987 TTCGCACGATGACTTCCCGA 61.869 55.000 0.00 0.00 0.00 5.14
100 101 1.011968 TTTCGCACGATGACTTCCCG 61.012 55.000 0.00 0.00 0.00 5.14
101 102 1.153353 TTTTCGCACGATGACTTCCC 58.847 50.000 0.00 0.00 0.00 3.97
102 103 2.673368 AGATTTTCGCACGATGACTTCC 59.327 45.455 0.00 0.00 0.00 3.46
103 104 3.367932 TGAGATTTTCGCACGATGACTTC 59.632 43.478 0.00 0.00 0.00 3.01
104 105 3.325870 TGAGATTTTCGCACGATGACTT 58.674 40.909 0.00 0.00 0.00 3.01
105 106 2.959516 TGAGATTTTCGCACGATGACT 58.040 42.857 0.00 0.00 0.00 3.41
106 107 3.933155 ATGAGATTTTCGCACGATGAC 57.067 42.857 0.00 0.00 0.00 3.06
107 108 4.051237 CCTATGAGATTTTCGCACGATGA 58.949 43.478 0.00 0.00 0.00 2.92
108 109 4.051237 TCCTATGAGATTTTCGCACGATG 58.949 43.478 0.00 0.00 0.00 3.84
109 110 4.051922 GTCCTATGAGATTTTCGCACGAT 58.948 43.478 0.00 0.00 0.00 3.73
110 111 3.444916 GTCCTATGAGATTTTCGCACGA 58.555 45.455 0.00 0.00 0.00 4.35
111 112 2.540101 GGTCCTATGAGATTTTCGCACG 59.460 50.000 0.00 0.00 0.00 5.34
112 113 3.531538 TGGTCCTATGAGATTTTCGCAC 58.468 45.455 0.00 0.00 0.00 5.34
113 114 3.797039 CTGGTCCTATGAGATTTTCGCA 58.203 45.455 0.00 0.00 0.00 5.10
114 115 2.545946 GCTGGTCCTATGAGATTTTCGC 59.454 50.000 0.00 0.00 0.00 4.70
115 116 2.797156 CGCTGGTCCTATGAGATTTTCG 59.203 50.000 0.00 0.00 0.00 3.46
116 117 2.545946 GCGCTGGTCCTATGAGATTTTC 59.454 50.000 0.00 0.00 0.00 2.29
117 118 2.171448 AGCGCTGGTCCTATGAGATTTT 59.829 45.455 10.39 0.00 0.00 1.82
118 119 1.765314 AGCGCTGGTCCTATGAGATTT 59.235 47.619 10.39 0.00 0.00 2.17
119 120 1.342819 GAGCGCTGGTCCTATGAGATT 59.657 52.381 18.48 0.00 0.00 2.40
120 121 0.965439 GAGCGCTGGTCCTATGAGAT 59.035 55.000 18.48 0.00 0.00 2.75
121 122 1.109920 GGAGCGCTGGTCCTATGAGA 61.110 60.000 18.48 0.00 45.63 3.27
122 123 1.365633 GGAGCGCTGGTCCTATGAG 59.634 63.158 18.48 0.00 45.63 2.90
123 124 3.538614 GGAGCGCTGGTCCTATGA 58.461 61.111 18.48 0.00 45.63 2.15
129 130 1.300233 CTATTCGGGAGCGCTGGTC 60.300 63.158 18.48 0.00 0.00 4.02
130 131 2.815308 CTATTCGGGAGCGCTGGT 59.185 61.111 18.48 0.00 0.00 4.00
131 132 2.663188 GCTATTCGGGAGCGCTGG 60.663 66.667 18.48 3.52 0.00 4.85
132 133 0.882042 ATTGCTATTCGGGAGCGCTG 60.882 55.000 18.48 0.00 43.19 5.18
133 134 0.601311 GATTGCTATTCGGGAGCGCT 60.601 55.000 11.27 11.27 43.19 5.92
134 135 1.862806 GATTGCTATTCGGGAGCGC 59.137 57.895 0.00 0.00 43.19 5.92
135 136 0.597637 ACGATTGCTATTCGGGAGCG 60.598 55.000 0.00 0.00 43.19 5.03
136 137 1.140816 GACGATTGCTATTCGGGAGC 58.859 55.000 0.00 0.00 40.83 4.70
137 138 1.001706 TCGACGATTGCTATTCGGGAG 60.002 52.381 0.00 0.81 40.83 4.30
138 139 1.001706 CTCGACGATTGCTATTCGGGA 60.002 52.381 0.00 0.00 40.83 5.14
139 140 1.409412 CTCGACGATTGCTATTCGGG 58.591 55.000 0.00 0.00 40.83 5.14
140 141 1.001706 TCCTCGACGATTGCTATTCGG 60.002 52.381 0.00 0.00 40.83 4.30
141 142 2.401017 TCCTCGACGATTGCTATTCG 57.599 50.000 0.00 2.68 42.20 3.34
142 143 3.902150 TGATCCTCGACGATTGCTATTC 58.098 45.455 0.00 0.00 0.00 1.75
143 144 4.322080 TTGATCCTCGACGATTGCTATT 57.678 40.909 0.00 0.00 0.00 1.73
144 145 4.051922 GTTTGATCCTCGACGATTGCTAT 58.948 43.478 0.00 0.00 0.00 2.97
145 146 3.130516 AGTTTGATCCTCGACGATTGCTA 59.869 43.478 0.00 0.00 0.00 3.49
146 147 2.093973 AGTTTGATCCTCGACGATTGCT 60.094 45.455 0.00 0.00 0.00 3.91
147 148 2.271800 AGTTTGATCCTCGACGATTGC 58.728 47.619 0.00 0.00 0.00 3.56
148 149 3.062639 CCAAGTTTGATCCTCGACGATTG 59.937 47.826 0.00 0.00 0.00 2.67
149 150 3.056107 TCCAAGTTTGATCCTCGACGATT 60.056 43.478 0.00 0.00 0.00 3.34
150 151 2.496070 TCCAAGTTTGATCCTCGACGAT 59.504 45.455 0.00 0.00 0.00 3.73
151 152 1.890489 TCCAAGTTTGATCCTCGACGA 59.110 47.619 0.00 0.00 0.00 4.20
152 153 2.363788 TCCAAGTTTGATCCTCGACG 57.636 50.000 0.00 0.00 0.00 5.12
153 154 3.680458 GTCTTCCAAGTTTGATCCTCGAC 59.320 47.826 0.00 0.00 0.00 4.20
154 155 3.323691 TGTCTTCCAAGTTTGATCCTCGA 59.676 43.478 0.00 0.00 0.00 4.04
182 183 1.597742 CGGCAATGTCCCTCAATAGG 58.402 55.000 0.00 0.00 43.25 2.57
186 187 1.228398 TTGCGGCAATGTCCCTCAA 60.228 52.632 12.11 0.00 0.00 3.02
188 189 2.700773 GGTTGCGGCAATGTCCCTC 61.701 63.158 19.53 3.67 0.00 4.30
193 194 1.462731 ATGTGTGGTTGCGGCAATGT 61.463 50.000 19.53 0.00 0.00 2.71
197 198 2.974692 AAGGATGTGTGGTTGCGGCA 62.975 55.000 0.00 0.00 0.00 5.69
211 212 4.019591 AGGTTTAGCGTCTTGGTTAAGGAT 60.020 41.667 0.00 0.00 34.59 3.24
212 213 3.325716 AGGTTTAGCGTCTTGGTTAAGGA 59.674 43.478 0.00 0.00 34.59 3.36
237 238 2.045131 GGCCCTGCTCTTGCTCTTG 61.045 63.158 0.00 0.00 40.48 3.02
240 241 4.811364 GGGGCCCTGCTCTTGCTC 62.811 72.222 24.38 0.00 40.48 4.26
264 265 3.075641 GGACCTCGGACCCTCACC 61.076 72.222 0.00 0.00 0.00 4.02
285 286 2.203480 TTTGGGCAGTGGAGGTGC 60.203 61.111 0.00 0.00 40.42 5.01
306 307 1.524621 GCCCACTCCACATCCGATG 60.525 63.158 6.84 6.84 0.00 3.84
311 312 2.125106 GTCGGCCCACTCCACATC 60.125 66.667 0.00 0.00 0.00 3.06
335 336 3.086600 CCTCCTCCTCCCACCAGC 61.087 72.222 0.00 0.00 0.00 4.85
338 339 1.563577 GGTTTCCTCCTCCTCCCACC 61.564 65.000 0.00 0.00 0.00 4.61
360 361 1.423921 ACAAAAGGACTCCCGGACAAT 59.576 47.619 0.73 0.00 37.58 2.71
366 367 0.107831 TCACCACAAAAGGACTCCCG 59.892 55.000 0.00 0.00 37.58 5.14
367 368 1.897560 CTCACCACAAAAGGACTCCC 58.102 55.000 0.00 0.00 0.00 4.30
374 375 6.019640 CACACTAATTTTGCTCACCACAAAAG 60.020 38.462 7.60 0.00 46.73 2.27
396 397 3.006940 GGATTAAAGTCCGCATGTCACA 58.993 45.455 0.00 0.00 0.00 3.58
422 423 7.169140 GTCCAAATTTGTGTAGTTTGTTGATCC 59.831 37.037 16.73 0.00 32.41 3.36
426 427 8.402472 TCTAGTCCAAATTTGTGTAGTTTGTTG 58.598 33.333 16.73 0.00 32.41 3.33
428 429 7.990886 TCTCTAGTCCAAATTTGTGTAGTTTGT 59.009 33.333 16.73 0.00 32.41 2.83
436 437 4.999950 AGCACTCTCTAGTCCAAATTTGTG 59.000 41.667 16.73 8.58 31.97 3.33
438 439 7.672983 TTTAGCACTCTCTAGTCCAAATTTG 57.327 36.000 11.40 11.40 31.97 2.32
458 459 8.958175 TTATTTGCTTTTCGTGTGGTATTTAG 57.042 30.769 0.00 0.00 0.00 1.85
460 461 8.707839 CAATTATTTGCTTTTCGTGTGGTATTT 58.292 29.630 0.00 0.00 0.00 1.40
465 466 5.689514 TCACAATTATTTGCTTTTCGTGTGG 59.310 36.000 0.00 0.00 36.22 4.17
497 498 6.226052 AGGAAAATTTTCATCCTGCTCAAAC 58.774 36.000 27.53 9.34 41.96 2.93
499 500 5.776716 AGAGGAAAATTTTCATCCTGCTCAA 59.223 36.000 31.38 0.00 46.03 3.02
502 503 7.177878 TCTTAGAGGAAAATTTTCATCCTGCT 58.822 34.615 31.38 20.29 46.03 4.24
510 511 8.730680 TGCACACTATCTTAGAGGAAAATTTTC 58.269 33.333 20.51 20.51 36.46 2.29
511 512 8.635765 TGCACACTATCTTAGAGGAAAATTTT 57.364 30.769 2.28 2.28 0.00 1.82
531 532 9.469807 AAAATATTCAAACGATTACTTTGCACA 57.530 25.926 0.00 0.00 0.00 4.57
643 644 1.273666 ACATTAGGGAACGGAGGGAGT 60.274 52.381 0.00 0.00 0.00 3.85
657 658 9.950680 CAGTAAACAAAATATGCCCTACATTAG 57.049 33.333 0.00 0.00 40.38 1.73
661 662 8.410673 TTTCAGTAAACAAAATATGCCCTACA 57.589 30.769 0.00 0.00 0.00 2.74
665 666 7.375053 TGACTTTCAGTAAACAAAATATGCCC 58.625 34.615 0.00 0.00 0.00 5.36
765 767 7.713507 CCGTCCCATAATGTAATAGAGTCAAAA 59.286 37.037 0.00 0.00 0.00 2.44
766 768 7.070198 TCCGTCCCATAATGTAATAGAGTCAAA 59.930 37.037 0.00 0.00 0.00 2.69
767 769 6.551975 TCCGTCCCATAATGTAATAGAGTCAA 59.448 38.462 0.00 0.00 0.00 3.18
768 770 6.072649 TCCGTCCCATAATGTAATAGAGTCA 58.927 40.000 0.00 0.00 0.00 3.41
769 771 6.350277 CCTCCGTCCCATAATGTAATAGAGTC 60.350 46.154 0.00 0.00 0.00 3.36
771 773 5.105310 CCCTCCGTCCCATAATGTAATAGAG 60.105 48.000 0.00 0.00 0.00 2.43
773 775 4.775780 TCCCTCCGTCCCATAATGTAATAG 59.224 45.833 0.00 0.00 0.00 1.73
774 776 4.754311 TCCCTCCGTCCCATAATGTAATA 58.246 43.478 0.00 0.00 0.00 0.98
778 999 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
779 1000 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
783 1004 1.233369 CCTACTCCCTCCGTCCCAT 59.767 63.158 0.00 0.00 0.00 4.00
784 1005 1.294426 ATCCTACTCCCTCCGTCCCA 61.294 60.000 0.00 0.00 0.00 4.37
786 1007 2.903375 ATATCCTACTCCCTCCGTCC 57.097 55.000 0.00 0.00 0.00 4.79
787 1008 5.323581 ACTTTATATCCTACTCCCTCCGTC 58.676 45.833 0.00 0.00 0.00 4.79
835 1063 3.096092 GGATTTATTGGGGAAGTGCACA 58.904 45.455 21.04 0.00 0.00 4.57
836 1064 3.096092 TGGATTTATTGGGGAAGTGCAC 58.904 45.455 9.40 9.40 0.00 4.57
837 1065 3.364549 CTGGATTTATTGGGGAAGTGCA 58.635 45.455 0.00 0.00 0.00 4.57
838 1066 2.101415 GCTGGATTTATTGGGGAAGTGC 59.899 50.000 0.00 0.00 0.00 4.40
839 1067 2.695147 GGCTGGATTTATTGGGGAAGTG 59.305 50.000 0.00 0.00 0.00 3.16
840 1068 2.686715 CGGCTGGATTTATTGGGGAAGT 60.687 50.000 0.00 0.00 0.00 3.01
841 1069 1.956477 CGGCTGGATTTATTGGGGAAG 59.044 52.381 0.00 0.00 0.00 3.46
842 1070 1.410932 CCGGCTGGATTTATTGGGGAA 60.411 52.381 5.28 0.00 37.49 3.97
843 1071 0.184933 CCGGCTGGATTTATTGGGGA 59.815 55.000 5.28 0.00 37.49 4.81
873 1344 2.516888 CCACGGGTGGGTGTCTCTT 61.517 63.158 10.05 0.00 46.81 2.85
949 1432 4.077188 GTCAAGCTGGTCGCGTGC 62.077 66.667 5.77 7.02 45.97 5.34
973 1459 3.782244 CTCCTGTTGCTCGTGCGC 61.782 66.667 0.00 0.00 43.34 6.09
979 1465 3.184683 CTCGCGCTCCTGTTGCTC 61.185 66.667 5.56 0.00 0.00 4.26
980 1466 4.749310 CCTCGCGCTCCTGTTGCT 62.749 66.667 5.56 0.00 0.00 3.91
981 1467 4.742201 TCCTCGCGCTCCTGTTGC 62.742 66.667 5.56 0.00 0.00 4.17
982 1468 2.290122 ATCTCCTCGCGCTCCTGTTG 62.290 60.000 5.56 0.00 0.00 3.33
983 1469 2.055042 ATCTCCTCGCGCTCCTGTT 61.055 57.895 5.56 0.00 0.00 3.16
984 1470 2.441164 ATCTCCTCGCGCTCCTGT 60.441 61.111 5.56 0.00 0.00 4.00
987 1473 4.212913 TGCATCTCCTCGCGCTCC 62.213 66.667 5.56 0.00 0.00 4.70
997 1492 3.796178 GTCTTGACGAAGATCTGCATCTC 59.204 47.826 0.51 0.00 40.40 2.75
1207 1708 2.602568 CCCCCGGACGGTATAGGG 60.603 72.222 0.73 9.05 43.41 3.53
1299 1802 1.134175 CCCGAATAAACGCAAGGCAAT 59.866 47.619 0.00 0.00 46.39 3.56
1305 1808 1.928706 GCCTGCCCGAATAAACGCAA 61.929 55.000 0.00 0.00 0.00 4.85
1324 1854 4.718961 ACTTCATCAGATAATTTCCCGGG 58.281 43.478 16.85 16.85 0.00 5.73
1326 1856 6.318648 TCCAAACTTCATCAGATAATTTCCCG 59.681 38.462 0.00 0.00 0.00 5.14
1340 1870 2.672961 TCGAGCGATCCAAACTTCAT 57.327 45.000 0.00 0.00 0.00 2.57
1353 1883 2.167861 GCTTGCCCTAGTTCGAGCG 61.168 63.158 5.32 0.00 30.91 5.03
1427 1958 2.676748 TGAACCCTTGGATGCAACTTT 58.323 42.857 0.00 0.00 0.00 2.66
1528 2067 5.149973 ACTCGTCTACTACTCAAGTCTCA 57.850 43.478 0.00 0.00 39.80 3.27
1535 2074 4.939439 TGCATACAACTCGTCTACTACTCA 59.061 41.667 0.00 0.00 0.00 3.41
1641 2180 2.119801 ACCAAGTGAGACATCCATGC 57.880 50.000 0.00 0.00 0.00 4.06
1649 2188 3.681897 CAGCACAAGATACCAAGTGAGAC 59.318 47.826 0.00 0.00 33.99 3.36
1704 2243 7.762615 CACATAAAAGGCAATGTCTCATCATTT 59.237 33.333 0.00 0.00 36.10 2.32
1717 2285 8.121305 ACAAGAATGATACACATAAAAGGCAA 57.879 30.769 0.00 0.00 38.38 4.52
1756 2392 6.963796 AGATGAGTGATTTGAAACAGAACAC 58.036 36.000 0.00 0.00 0.00 3.32
1810 2446 1.066716 TGGTAACAGACGGTATGGTGC 60.067 52.381 3.08 1.44 46.17 5.01
1929 2597 0.459489 AGTGCACAAAATGGCGTGTT 59.541 45.000 21.04 0.00 35.51 3.32
1936 2604 6.220469 TGTCCTGTGACAGTGCACAAAATG 62.220 45.833 21.04 11.04 46.40 2.32
2093 2761 5.248020 AGTGAGAGTCTTGACCTTGATCATT 59.752 40.000 0.00 0.00 0.00 2.57
2258 2934 9.698309 GAGCAGAACATATACATATAACACAGT 57.302 33.333 0.00 0.00 0.00 3.55
2259 2935 8.854312 CGAGCAGAACATATACATATAACACAG 58.146 37.037 0.00 0.00 0.00 3.66
2260 2936 8.573035 TCGAGCAGAACATATACATATAACACA 58.427 33.333 0.00 0.00 0.00 3.72
2261 2937 8.965986 TCGAGCAGAACATATACATATAACAC 57.034 34.615 0.00 0.00 0.00 3.32
2266 2942 9.144747 GTTCATTCGAGCAGAACATATACATAT 57.855 33.333 16.76 0.00 42.39 1.78
2267 2943 8.360390 AGTTCATTCGAGCAGAACATATACATA 58.640 33.333 21.05 0.00 43.00 2.29
2268 2944 7.212976 AGTTCATTCGAGCAGAACATATACAT 58.787 34.615 21.05 4.16 43.00 2.29
2269 2945 6.573434 AGTTCATTCGAGCAGAACATATACA 58.427 36.000 21.05 0.00 43.00 2.29
2270 2946 6.144724 GGAGTTCATTCGAGCAGAACATATAC 59.855 42.308 21.05 11.09 43.00 1.47
2271 2947 6.040955 AGGAGTTCATTCGAGCAGAACATATA 59.959 38.462 21.05 0.00 43.00 0.86
2272 2948 5.053145 GGAGTTCATTCGAGCAGAACATAT 58.947 41.667 21.05 7.60 43.00 1.78
2276 2952 2.926838 GAGGAGTTCATTCGAGCAGAAC 59.073 50.000 14.91 14.91 42.39 3.01
2295 2981 5.354513 TGTTACAGATACGAGGAACAGAGAG 59.645 44.000 0.00 0.00 0.00 3.20
2327 3013 6.599356 TGCTAGACACTTACAAAGTATCCA 57.401 37.500 0.00 0.00 40.46 3.41
2343 3029 2.213499 CGGGTCATCCAAATGCTAGAC 58.787 52.381 0.00 0.00 34.36 2.59
2359 3045 6.758806 AATAATTACATCCTTAGTCCGGGT 57.241 37.500 0.00 0.00 0.00 5.28
2363 3049 9.343539 AGCAGAAAATAATTACATCCTTAGTCC 57.656 33.333 0.00 0.00 0.00 3.85
2370 3056 6.698766 CCTGCAAGCAGAAAATAATTACATCC 59.301 38.462 22.76 0.00 46.30 3.51
2494 3180 9.017669 CATTACAGCTTAACTAACTAGTAACCG 57.982 37.037 0.00 0.00 34.99 4.44
2501 3187 7.063780 GCGTTTCCATTACAGCTTAACTAACTA 59.936 37.037 0.00 0.00 0.00 2.24
2502 3188 6.128363 GCGTTTCCATTACAGCTTAACTAACT 60.128 38.462 0.00 0.00 0.00 2.24
2503 3189 6.019762 GCGTTTCCATTACAGCTTAACTAAC 58.980 40.000 0.00 0.00 0.00 2.34
2504 3190 5.935789 AGCGTTTCCATTACAGCTTAACTAA 59.064 36.000 0.00 0.00 0.00 2.24
2556 3242 0.106268 ACCAACACAGGTTCCATGCA 60.106 50.000 0.00 0.00 39.34 3.96
2582 3268 9.103861 AGCAAAGCTAGTTTGTTATTATCTCTC 57.896 33.333 14.90 0.84 46.44 3.20
2672 3360 1.689273 AGAGCTAATAACTGAGGCGGG 59.311 52.381 0.00 0.00 0.00 6.13
2680 3368 2.969628 ACGCAGCAGAGCTAATAACT 57.030 45.000 0.00 0.00 36.40 2.24
2712 3400 6.924111 ACACAACCCAAAATTCAGATGATAC 58.076 36.000 0.00 0.00 0.00 2.24
2793 3483 2.680841 CGCGAAACCCCAAATCAATCTA 59.319 45.455 0.00 0.00 0.00 1.98
2803 3493 2.045731 GGATTCCGCGAAACCCCA 60.046 61.111 8.23 0.00 29.81 4.96
2805 3495 0.675522 TTCAGGATTCCGCGAAACCC 60.676 55.000 8.23 0.00 35.48 4.11
2806 3496 1.161843 TTTCAGGATTCCGCGAAACC 58.838 50.000 8.23 8.57 35.18 3.27
2807 3497 2.031508 TGTTTTCAGGATTCCGCGAAAC 60.032 45.455 8.23 17.29 32.48 2.78
2808 3498 2.222886 TGTTTTCAGGATTCCGCGAAA 58.777 42.857 8.23 15.35 31.46 3.46
2814 3530 6.600822 TCAGATCAGAATGTTTTCAGGATTCC 59.399 38.462 0.00 0.00 37.40 3.01
2860 3576 4.015872 TGTAACCCAAGTGGCTTCTAAG 57.984 45.455 0.00 0.00 37.83 2.18
2884 3605 7.429340 GCACGAGTATATTTTTCATTTGAGGTG 59.571 37.037 0.00 0.00 0.00 4.00
2904 3625 4.880886 TGGATTACAATGATTGCACGAG 57.119 40.909 4.84 0.00 0.00 4.18
2906 3627 4.923893 ACATGGATTACAATGATTGCACG 58.076 39.130 4.84 0.00 0.00 5.34
2907 3628 6.567050 AGAACATGGATTACAATGATTGCAC 58.433 36.000 4.84 0.00 0.00 4.57
2951 3672 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
2954 3675 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2955 3676 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2956 3677 7.097834 AGAAAGACTTACATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
2957 3678 7.001099 AGAAAGACTTACATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
2958 3679 8.248945 TCTAGAAAGACTTACATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
2959 3680 9.291664 CTCTAGAAAGACTTACATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
2967 3688 9.660180 GTGGAAATCTCTAGAAAGACTTACATT 57.340 33.333 0.00 0.00 0.00 2.71
2968 3689 9.041354 AGTGGAAATCTCTAGAAAGACTTACAT 57.959 33.333 0.00 0.00 0.00 2.29
2970 3691 9.791820 GTAGTGGAAATCTCTAGAAAGACTTAC 57.208 37.037 0.00 0.00 0.00 2.34
2971 3692 8.675504 CGTAGTGGAAATCTCTAGAAAGACTTA 58.324 37.037 0.00 0.00 0.00 2.24
2972 3693 7.363094 CCGTAGTGGAAATCTCTAGAAAGACTT 60.363 40.741 0.00 0.00 42.00 3.01
2973 3694 6.095720 CCGTAGTGGAAATCTCTAGAAAGACT 59.904 42.308 0.00 0.00 42.00 3.24
2974 3695 6.095160 TCCGTAGTGGAAATCTCTAGAAAGAC 59.905 42.308 0.00 0.00 46.38 3.01
2975 3696 6.185511 TCCGTAGTGGAAATCTCTAGAAAGA 58.814 40.000 0.00 0.00 46.38 2.52
2976 3697 6.452494 TCCGTAGTGGAAATCTCTAGAAAG 57.548 41.667 0.00 0.00 46.38 2.62
2990 3711 3.562973 ACGTCATATGTAGTCCGTAGTGG 59.437 47.826 1.90 0.00 40.09 4.00
2991 3712 4.808077 ACGTCATATGTAGTCCGTAGTG 57.192 45.455 1.90 0.00 0.00 2.74
2992 3713 6.925610 TTTACGTCATATGTAGTCCGTAGT 57.074 37.500 1.90 0.00 33.09 2.73
2993 3714 8.071967 TCATTTTACGTCATATGTAGTCCGTAG 58.928 37.037 1.90 0.00 33.09 3.51
2994 3715 7.929159 TCATTTTACGTCATATGTAGTCCGTA 58.071 34.615 1.90 6.46 0.00 4.02
2995 3716 6.798482 TCATTTTACGTCATATGTAGTCCGT 58.202 36.000 1.90 7.33 0.00 4.69
2996 3717 6.916387 ACTCATTTTACGTCATATGTAGTCCG 59.084 38.462 1.90 1.94 0.00 4.79
2997 3718 7.919091 TCACTCATTTTACGTCATATGTAGTCC 59.081 37.037 1.90 0.00 0.00 3.85
2998 3719 8.851960 TCACTCATTTTACGTCATATGTAGTC 57.148 34.615 1.90 0.00 0.00 2.59
2999 3720 8.467598 ACTCACTCATTTTACGTCATATGTAGT 58.532 33.333 1.90 6.81 0.00 2.73
3000 3721 8.858003 ACTCACTCATTTTACGTCATATGTAG 57.142 34.615 1.90 0.79 0.00 2.74
3001 3722 7.642586 CGACTCACTCATTTTACGTCATATGTA 59.357 37.037 1.90 0.00 0.00 2.29
3002 3723 6.472486 CGACTCACTCATTTTACGTCATATGT 59.528 38.462 1.90 0.00 0.00 2.29
3003 3724 6.691388 TCGACTCACTCATTTTACGTCATATG 59.309 38.462 0.00 0.00 0.00 1.78
3004 3725 6.691818 GTCGACTCACTCATTTTACGTCATAT 59.308 38.462 8.70 0.00 0.00 1.78
3005 3726 6.025896 GTCGACTCACTCATTTTACGTCATA 58.974 40.000 8.70 0.00 0.00 2.15
3006 3727 4.857588 GTCGACTCACTCATTTTACGTCAT 59.142 41.667 8.70 0.00 0.00 3.06
3007 3728 4.224433 GTCGACTCACTCATTTTACGTCA 58.776 43.478 8.70 0.00 0.00 4.35
3008 3729 4.088213 GTGTCGACTCACTCATTTTACGTC 59.912 45.833 17.92 0.00 35.68 4.34
3009 3730 3.979495 GTGTCGACTCACTCATTTTACGT 59.021 43.478 17.92 0.00 35.68 3.57
3010 3731 4.227538 AGTGTCGACTCACTCATTTTACG 58.772 43.478 17.92 0.00 44.07 3.18
3023 3744 1.440708 CGGACTACTGAGTGTCGACT 58.559 55.000 17.92 0.00 35.45 4.18
3024 3745 0.179194 GCGGACTACTGAGTGTCGAC 60.179 60.000 9.11 9.11 35.45 4.20
3025 3746 0.604511 TGCGGACTACTGAGTGTCGA 60.605 55.000 0.00 0.00 35.45 4.20
3026 3747 0.452184 ATGCGGACTACTGAGTGTCG 59.548 55.000 0.00 0.00 35.45 4.35
3027 3748 2.094700 TCAATGCGGACTACTGAGTGTC 60.095 50.000 0.00 0.96 35.45 3.67
3028 3749 1.893137 TCAATGCGGACTACTGAGTGT 59.107 47.619 0.00 0.00 35.45 3.55
3029 3750 2.654749 TCAATGCGGACTACTGAGTG 57.345 50.000 0.00 0.00 35.45 3.51
3030 3751 3.678056 TTTCAATGCGGACTACTGAGT 57.322 42.857 0.00 0.00 39.20 3.41
3031 3752 4.437239 AGATTTCAATGCGGACTACTGAG 58.563 43.478 0.00 0.00 0.00 3.35
3032 3753 4.160439 AGAGATTTCAATGCGGACTACTGA 59.840 41.667 0.00 0.00 0.00 3.41
3033 3754 4.437239 AGAGATTTCAATGCGGACTACTG 58.563 43.478 0.00 0.00 0.00 2.74
3034 3755 4.744795 AGAGATTTCAATGCGGACTACT 57.255 40.909 0.00 0.00 0.00 2.57
3035 3756 6.903883 TTTAGAGATTTCAATGCGGACTAC 57.096 37.500 0.00 0.00 0.00 2.73
3036 3757 7.915293 TTTTTAGAGATTTCAATGCGGACTA 57.085 32.000 0.00 0.00 0.00 2.59
3037 3758 6.817765 TTTTTAGAGATTTCAATGCGGACT 57.182 33.333 0.00 0.00 0.00 3.85
3057 3778 6.801575 TCCTTTCGTAAATGCAAGTCTTTTT 58.198 32.000 0.00 0.00 0.00 1.94
3058 3779 6.385649 TCCTTTCGTAAATGCAAGTCTTTT 57.614 33.333 0.00 0.00 0.00 2.27
3059 3780 5.048713 CCTCCTTTCGTAAATGCAAGTCTTT 60.049 40.000 0.00 0.00 0.00 2.52
3060 3781 4.455877 CCTCCTTTCGTAAATGCAAGTCTT 59.544 41.667 0.00 0.00 0.00 3.01
3061 3782 4.003648 CCTCCTTTCGTAAATGCAAGTCT 58.996 43.478 0.00 0.00 0.00 3.24
3062 3783 3.127030 CCCTCCTTTCGTAAATGCAAGTC 59.873 47.826 0.00 0.00 0.00 3.01
3063 3784 3.081804 CCCTCCTTTCGTAAATGCAAGT 58.918 45.455 0.00 0.00 0.00 3.16
3064 3785 3.343617 TCCCTCCTTTCGTAAATGCAAG 58.656 45.455 0.00 0.00 0.00 4.01
3065 3786 3.244770 ACTCCCTCCTTTCGTAAATGCAA 60.245 43.478 0.00 0.00 0.00 4.08
3066 3787 2.304761 ACTCCCTCCTTTCGTAAATGCA 59.695 45.455 0.00 0.00 0.00 3.96
3067 3788 2.987232 ACTCCCTCCTTTCGTAAATGC 58.013 47.619 0.00 0.00 0.00 3.56
3068 3789 8.904099 AATAATACTCCCTCCTTTCGTAAATG 57.096 34.615 0.00 0.00 0.00 2.32
3069 3790 8.935741 AGAATAATACTCCCTCCTTTCGTAAAT 58.064 33.333 0.00 0.00 0.00 1.40
3070 3791 8.202137 CAGAATAATACTCCCTCCTTTCGTAAA 58.798 37.037 0.00 0.00 0.00 2.01
3071 3792 7.686127 GCAGAATAATACTCCCTCCTTTCGTAA 60.686 40.741 0.00 0.00 0.00 3.18
3072 3793 6.239232 GCAGAATAATACTCCCTCCTTTCGTA 60.239 42.308 0.00 0.00 0.00 3.43
3073 3794 5.453480 GCAGAATAATACTCCCTCCTTTCGT 60.453 44.000 0.00 0.00 0.00 3.85
3074 3795 4.991687 GCAGAATAATACTCCCTCCTTTCG 59.008 45.833 0.00 0.00 0.00 3.46
3075 3796 6.042666 AGAGCAGAATAATACTCCCTCCTTTC 59.957 42.308 0.00 0.00 0.00 2.62
3076 3797 5.908247 AGAGCAGAATAATACTCCCTCCTTT 59.092 40.000 0.00 0.00 0.00 3.11
3077 3798 5.472347 AGAGCAGAATAATACTCCCTCCTT 58.528 41.667 0.00 0.00 0.00 3.36
3078 3799 5.086598 AGAGCAGAATAATACTCCCTCCT 57.913 43.478 0.00 0.00 0.00 3.69
3079 3800 6.152154 GTCTAGAGCAGAATAATACTCCCTCC 59.848 46.154 0.00 0.00 34.17 4.30
3080 3801 6.717540 TGTCTAGAGCAGAATAATACTCCCTC 59.282 42.308 0.00 0.00 34.17 4.30
3081 3802 6.492087 GTGTCTAGAGCAGAATAATACTCCCT 59.508 42.308 0.00 0.00 34.17 4.20
3082 3803 6.568844 CGTGTCTAGAGCAGAATAATACTCCC 60.569 46.154 0.00 0.00 34.17 4.30
3083 3804 6.205076 TCGTGTCTAGAGCAGAATAATACTCC 59.795 42.308 0.00 0.00 34.17 3.85
3084 3805 7.171848 TCTCGTGTCTAGAGCAGAATAATACTC 59.828 40.741 0.00 0.00 34.17 2.59
3085 3806 6.993308 TCTCGTGTCTAGAGCAGAATAATACT 59.007 38.462 0.00 0.00 34.17 2.12
3086 3807 7.192148 TCTCGTGTCTAGAGCAGAATAATAC 57.808 40.000 0.00 0.00 34.17 1.89
3087 3808 7.499563 AGTTCTCGTGTCTAGAGCAGAATAATA 59.500 37.037 0.00 0.00 34.17 0.98
3088 3809 6.320164 AGTTCTCGTGTCTAGAGCAGAATAAT 59.680 38.462 0.00 0.00 34.17 1.28
3089 3810 5.648526 AGTTCTCGTGTCTAGAGCAGAATAA 59.351 40.000 0.00 0.00 34.17 1.40
3090 3811 5.186942 AGTTCTCGTGTCTAGAGCAGAATA 58.813 41.667 0.00 0.00 34.17 1.75
3091 3812 4.013728 AGTTCTCGTGTCTAGAGCAGAAT 58.986 43.478 0.00 0.00 34.17 2.40
3092 3813 3.413327 AGTTCTCGTGTCTAGAGCAGAA 58.587 45.455 0.00 0.00 34.17 3.02
3093 3814 3.060736 AGTTCTCGTGTCTAGAGCAGA 57.939 47.619 0.00 0.00 35.79 4.26
3094 3815 3.936453 ACTAGTTCTCGTGTCTAGAGCAG 59.064 47.826 18.31 0.00 36.17 4.24
3095 3816 3.685272 CACTAGTTCTCGTGTCTAGAGCA 59.315 47.826 18.31 0.00 36.17 4.26
3096 3817 3.685756 ACACTAGTTCTCGTGTCTAGAGC 59.314 47.826 18.31 2.78 40.06 4.09
3097 3818 5.866335 AACACTAGTTCTCGTGTCTAGAG 57.134 43.478 18.31 14.82 43.05 2.43
3098 3819 6.707608 TGTAAACACTAGTTCTCGTGTCTAGA 59.292 38.462 18.31 0.00 43.05 2.43
3099 3820 6.796072 GTGTAAACACTAGTTCTCGTGTCTAG 59.204 42.308 9.83 13.41 43.05 2.43
3100 3821 6.260714 TGTGTAAACACTAGTTCTCGTGTCTA 59.739 38.462 13.95 0.00 46.55 2.59
3101 3822 5.066893 TGTGTAAACACTAGTTCTCGTGTCT 59.933 40.000 13.95 0.73 46.55 3.41
3107 3828 6.296365 GGGTTTGTGTAAACACTAGTTCTC 57.704 41.667 13.95 0.00 44.86 2.87
3120 3841 8.528044 AAGAACAAGATAAAAGGGTTTGTGTA 57.472 30.769 0.00 0.00 32.75 2.90
3175 3896 7.425224 TCTTAACTGGAGGAAAGATCTTAGG 57.575 40.000 8.75 0.00 0.00 2.69
3178 3899 8.261522 GTGTATCTTAACTGGAGGAAAGATCTT 58.738 37.037 0.88 0.88 39.01 2.40
3191 3912 6.691818 CGTAGCTTACCAGTGTATCTTAACTG 59.308 42.308 0.00 0.00 42.83 3.16
3239 3963 2.358267 AGCTCAATATGCTGCTTTCTGC 59.642 45.455 0.00 0.00 39.56 4.26
3296 4020 1.073722 TTTGCTCCCTGCTCTGGTG 59.926 57.895 0.00 0.00 43.37 4.17
3323 4047 8.946860 AAGAGAAGTTCTCAGCTGATGCTCAC 62.947 46.154 29.85 9.52 45.73 3.51
3338 4062 6.056236 AGGTTTGTACAGGAAAGAGAAGTTC 58.944 40.000 0.00 0.00 0.00 3.01
3382 4106 0.976073 TTACTCCTCCGGCCTCTTGG 60.976 60.000 0.00 0.00 0.00 3.61
3390 4114 0.747852 GCCTCTTCTTACTCCTCCGG 59.252 60.000 0.00 0.00 0.00 5.14
3391 4115 0.747852 GGCCTCTTCTTACTCCTCCG 59.252 60.000 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.