Multiple sequence alignment - TraesCS5B01G222700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G222700 chr5B 100.000 7075 0 0 1 7075 397827657 397834731 0.000000e+00 13066.0
1 TraesCS5B01G222700 chr5B 92.845 573 41 0 3056 3628 566408061 566407489 0.000000e+00 832.0
2 TraesCS5B01G222700 chr5B 95.349 43 2 0 6397 6439 356371695 356371737 1.270000e-07 69.4
3 TraesCS5B01G222700 chr5D 94.312 3815 172 19 2565 6371 338652542 338656319 0.000000e+00 5801.0
4 TraesCS5B01G222700 chr5D 87.680 2224 110 56 425 2568 338650293 338652432 0.000000e+00 2438.0
5 TraesCS5B01G222700 chr5D 86.806 576 20 19 6532 7075 338656330 338656881 6.110000e-165 592.0
6 TraesCS5B01G222700 chr5D 93.197 147 8 2 114 260 338650033 338650177 1.550000e-51 215.0
7 TraesCS5B01G222700 chr5D 87.500 96 3 4 1 90 338649895 338649987 1.260000e-17 102.0
8 TraesCS5B01G222700 chr5A 92.321 4076 206 40 2368 6394 439547470 439551487 0.000000e+00 5694.0
9 TraesCS5B01G222700 chr5A 85.560 2500 154 82 2 2376 439545031 439547448 0.000000e+00 2425.0
10 TraesCS5B01G222700 chr5A 92.386 394 15 5 6684 7075 439551540 439551920 1.340000e-151 547.0
11 TraesCS5B01G222700 chr2B 94.066 573 34 0 3056 3628 247552125 247552697 0.000000e+00 870.0
12 TraesCS5B01G222700 chr2B 93.531 572 37 0 3056 3627 281533427 281532856 0.000000e+00 852.0
13 TraesCS5B01G222700 chr2B 92.321 573 44 0 3056 3628 269879485 269880057 0.000000e+00 815.0
14 TraesCS5B01G222700 chr2B 84.314 102 11 4 6453 6550 683308614 683308514 2.100000e-15 95.3
15 TraesCS5B01G222700 chr3B 93.543 573 37 0 3056 3628 738243320 738243892 0.000000e+00 854.0
16 TraesCS5B01G222700 chr3B 89.535 86 6 3 6453 6536 229821587 229821671 9.710000e-19 106.0
17 TraesCS5B01G222700 chr3B 97.436 39 1 0 6412 6450 756657340 756657302 4.580000e-07 67.6
18 TraesCS5B01G222700 chr6B 93.520 571 37 0 3056 3626 154308813 154309383 0.000000e+00 850.0
19 TraesCS5B01G222700 chr6B 87.432 183 9 6 2437 2610 178026831 178026654 1.560000e-46 198.0
20 TraesCS5B01G222700 chr6B 88.636 132 4 5 2437 2559 559484698 559484827 4.420000e-32 150.0
21 TraesCS5B01G222700 chr6B 89.412 85 8 1 6452 6536 450843676 450843593 9.710000e-19 106.0
22 TraesCS5B01G222700 chr6B 89.412 85 6 3 6452 6535 402144548 402144630 3.490000e-18 104.0
23 TraesCS5B01G222700 chr4A 93.368 573 37 1 3056 3628 552227356 552226785 0.000000e+00 846.0
24 TraesCS5B01G222700 chr2A 93.019 573 40 0 3056 3628 591091022 591091594 0.000000e+00 837.0
25 TraesCS5B01G222700 chr1D 90.476 84 7 1 6452 6535 466120092 466120174 7.500000e-20 110.0
26 TraesCS5B01G222700 chr1D 83.908 87 14 0 6988 7074 291842220 291842134 4.550000e-12 84.2
27 TraesCS5B01G222700 chr3D 90.476 84 5 3 6453 6535 22268439 22268358 2.700000e-19 108.0
28 TraesCS5B01G222700 chr2D 88.506 87 9 1 6452 6538 265159583 265159498 3.490000e-18 104.0
29 TraesCS5B01G222700 chr2D 88.372 86 9 1 6452 6537 71262117 71262201 1.260000e-17 102.0
30 TraesCS5B01G222700 chr4B 87.500 88 9 2 6452 6538 405327886 405327972 4.520000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G222700 chr5B 397827657 397834731 7074 False 13066.000000 13066 100.000 1 7075 1 chr5B.!!$F2 7074
1 TraesCS5B01G222700 chr5B 566407489 566408061 572 True 832.000000 832 92.845 3056 3628 1 chr5B.!!$R1 572
2 TraesCS5B01G222700 chr5D 338649895 338656881 6986 False 1829.600000 5801 89.899 1 7075 5 chr5D.!!$F1 7074
3 TraesCS5B01G222700 chr5A 439545031 439551920 6889 False 2888.666667 5694 90.089 2 7075 3 chr5A.!!$F1 7073
4 TraesCS5B01G222700 chr2B 247552125 247552697 572 False 870.000000 870 94.066 3056 3628 1 chr2B.!!$F1 572
5 TraesCS5B01G222700 chr2B 281532856 281533427 571 True 852.000000 852 93.531 3056 3627 1 chr2B.!!$R1 571
6 TraesCS5B01G222700 chr2B 269879485 269880057 572 False 815.000000 815 92.321 3056 3628 1 chr2B.!!$F2 572
7 TraesCS5B01G222700 chr3B 738243320 738243892 572 False 854.000000 854 93.543 3056 3628 1 chr3B.!!$F2 572
8 TraesCS5B01G222700 chr6B 154308813 154309383 570 False 850.000000 850 93.520 3056 3626 1 chr6B.!!$F1 570
9 TraesCS5B01G222700 chr4A 552226785 552227356 571 True 846.000000 846 93.368 3056 3628 1 chr4A.!!$R1 572
10 TraesCS5B01G222700 chr2A 591091022 591091594 572 False 837.000000 837 93.019 3056 3628 1 chr2A.!!$F1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 441 0.038343 CCTGCGGTTTTTCCATGGTG 60.038 55.0 12.58 0.00 35.57 4.17 F
1476 1620 0.250038 ACTGTCATGCTTGAGTGCGT 60.250 50.0 1.91 0.00 35.36 5.24 F
2623 3014 0.105964 TGTCCTGTTCACCAACTCCG 59.894 55.0 0.00 0.00 33.17 4.63 F
2799 3194 0.096281 ACGCTGTTGTCGTGTGTTTG 59.904 50.0 0.00 0.00 38.88 2.93 F
2865 3261 0.179094 TCGGGCATGTGTAATCGACC 60.179 55.0 0.00 0.00 0.00 4.79 F
4451 4863 0.238289 ACGCCATTGCTTCAAAGACG 59.762 50.0 0.00 0.00 34.43 4.18 F
4935 5347 0.887836 TCTCTTGTTGCCTGCTGCTG 60.888 55.0 0.00 0.00 42.00 4.41 F
5655 6071 0.035725 TCTAACTGACGGCGGAGAGA 60.036 55.0 13.24 2.29 0.00 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 2261 0.112995 TGAAGGTGAAAGGCAGCCAT 59.887 50.000 15.80 0.00 46.03 4.40 R
2791 3186 0.582005 GTCGCTGTCTCCAAACACAC 59.418 55.000 0.00 0.00 0.00 3.82 R
4451 4863 1.340405 ACATTGGCAGGATCCACAGAC 60.340 52.381 15.82 6.12 35.50 3.51 R
4709 5121 2.222678 CATGTAATCATCAGCGACCAGC 59.777 50.000 0.00 0.00 37.99 4.85 R
4850 5262 2.699846 GAGCTCCTCCTTCACATGATCT 59.300 50.000 0.87 0.00 0.00 2.75 R
5632 6048 0.035152 TCCGCCGTCAGTTAGAGGTA 60.035 55.000 0.00 0.00 0.00 3.08 R
5951 6367 0.040425 CTGAACCCTTGCCGTTTTCG 60.040 55.000 0.00 0.00 43.67 3.46 R
6909 7367 0.106268 TGCATGGAACCTGTGTTGGT 60.106 50.000 0.00 0.00 43.11 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 112 1.053835 TTCTCTCCACCACACAGGCA 61.054 55.000 0.00 0.00 43.14 4.75
103 113 1.302033 CTCTCCACCACACAGGCAC 60.302 63.158 0.00 0.00 43.14 5.01
104 114 2.043604 CTCTCCACCACACAGGCACA 62.044 60.000 0.00 0.00 43.14 4.57
105 115 1.598962 CTCCACCACACAGGCACAG 60.599 63.158 0.00 0.00 43.14 3.66
106 116 2.043604 CTCCACCACACAGGCACAGA 62.044 60.000 0.00 0.00 43.14 3.41
107 117 1.598962 CCACCACACAGGCACAGAG 60.599 63.158 0.00 0.00 43.14 3.35
108 118 1.598962 CACCACACAGGCACAGAGG 60.599 63.158 0.00 0.00 43.14 3.69
109 119 2.670934 CCACACAGGCACAGAGGC 60.671 66.667 0.00 0.00 44.61 4.70
164 197 2.354656 GCACTCGCACACGACAGA 60.355 61.111 0.00 0.00 45.12 3.41
256 305 3.396560 ACTAAACGGATAATTAGCCCGC 58.603 45.455 21.83 0.00 46.54 6.13
260 309 1.972795 ACGGATAATTAGCCCGCCTAA 59.027 47.619 21.83 0.00 46.54 2.69
261 310 2.570302 ACGGATAATTAGCCCGCCTAAT 59.430 45.455 21.83 6.29 46.25 1.73
262 311 3.195661 CGGATAATTAGCCCGCCTAATC 58.804 50.000 14.05 0.00 44.11 1.75
263 312 3.542648 GGATAATTAGCCCGCCTAATCC 58.457 50.000 8.67 0.00 44.11 3.01
264 313 3.200165 GGATAATTAGCCCGCCTAATCCT 59.800 47.826 8.67 0.15 44.11 3.24
268 317 1.125711 TAGCCCGCCTAATCCTTCCC 61.126 60.000 0.00 0.00 0.00 3.97
269 318 2.752807 GCCCGCCTAATCCTTCCCA 61.753 63.158 0.00 0.00 0.00 4.37
271 320 1.345715 CCCGCCTAATCCTTCCCAGT 61.346 60.000 0.00 0.00 0.00 4.00
273 322 1.978580 CCGCCTAATCCTTCCCAGTAT 59.021 52.381 0.00 0.00 0.00 2.12
274 323 3.170717 CCGCCTAATCCTTCCCAGTATA 58.829 50.000 0.00 0.00 0.00 1.47
275 324 3.056035 CCGCCTAATCCTTCCCAGTATAC 60.056 52.174 0.00 0.00 0.00 1.47
276 325 3.056035 CGCCTAATCCTTCCCAGTATACC 60.056 52.174 0.00 0.00 0.00 2.73
279 333 4.021368 CCTAATCCTTCCCAGTATACCACG 60.021 50.000 0.00 0.00 0.00 4.94
289 343 4.142026 CCCAGTATACCACGATCAAACAGA 60.142 45.833 0.00 0.00 0.00 3.41
301 355 6.591834 CACGATCAAACAGAGGAAGAAATACT 59.408 38.462 0.00 0.00 0.00 2.12
303 357 8.478877 ACGATCAAACAGAGGAAGAAATACTAT 58.521 33.333 0.00 0.00 0.00 2.12
308 362 4.103311 ACAGAGGAAGAAATACTATGCCCC 59.897 45.833 0.00 0.00 34.31 5.80
310 364 5.544176 CAGAGGAAGAAATACTATGCCCCTA 59.456 44.000 0.00 0.00 0.00 3.53
312 366 6.795000 AGAGGAAGAAATACTATGCCCCTATT 59.205 38.462 0.00 0.00 0.00 1.73
319 373 9.567702 AGAAATACTATGCCCCTATTCTAATCT 57.432 33.333 0.00 0.00 0.00 2.40
339 393 5.712217 TCTAACCAAAAAGTATCATCGCG 57.288 39.130 0.00 0.00 0.00 5.87
340 394 2.825086 ACCAAAAAGTATCATCGCGC 57.175 45.000 0.00 0.00 0.00 6.86
341 395 1.400494 ACCAAAAAGTATCATCGCGCC 59.600 47.619 0.00 0.00 0.00 6.53
342 396 1.670811 CCAAAAAGTATCATCGCGCCT 59.329 47.619 0.00 0.00 0.00 5.52
343 397 2.539547 CCAAAAAGTATCATCGCGCCTG 60.540 50.000 0.00 0.88 0.00 4.85
344 398 2.024176 AAAAGTATCATCGCGCCTGT 57.976 45.000 0.00 0.00 0.00 4.00
346 400 1.154205 AAGTATCATCGCGCCTGTGC 61.154 55.000 0.00 0.00 0.00 4.57
348 402 1.592400 TATCATCGCGCCTGTGCTG 60.592 57.895 0.00 0.00 34.43 4.41
367 421 3.677648 AGCGCTGCTGCAAAAGGG 61.678 61.111 10.39 1.76 37.57 3.95
369 423 4.729856 CGCTGCTGCAAAAGGGCC 62.730 66.667 16.29 0.00 39.64 5.80
370 424 3.308705 GCTGCTGCAAAAGGGCCT 61.309 61.111 11.11 0.00 39.41 5.19
371 425 2.654877 CTGCTGCAAAAGGGCCTG 59.345 61.111 6.92 0.00 0.00 4.85
372 426 3.584868 CTGCTGCAAAAGGGCCTGC 62.585 63.158 6.92 8.30 39.09 4.85
373 427 4.729856 GCTGCAAAAGGGCCTGCG 62.730 66.667 6.92 5.31 41.63 5.18
374 428 4.060038 CTGCAAAAGGGCCTGCGG 62.060 66.667 6.92 9.03 41.63 5.69
375 429 4.912395 TGCAAAAGGGCCTGCGGT 62.912 61.111 6.92 0.00 41.63 5.68
376 430 3.615709 GCAAAAGGGCCTGCGGTT 61.616 61.111 6.92 0.00 0.00 4.44
377 431 3.137687 CAAAAGGGCCTGCGGTTT 58.862 55.556 6.92 0.00 0.00 3.27
378 432 1.445518 CAAAAGGGCCTGCGGTTTT 59.554 52.632 6.92 0.00 0.00 2.43
379 433 0.179059 CAAAAGGGCCTGCGGTTTTT 60.179 50.000 6.92 0.00 0.00 1.94
380 434 0.105964 AAAAGGGCCTGCGGTTTTTC 59.894 50.000 6.92 0.00 0.00 2.29
381 435 1.754380 AAAGGGCCTGCGGTTTTTCC 61.754 55.000 6.92 0.00 0.00 3.13
382 436 2.915137 GGGCCTGCGGTTTTTCCA 60.915 61.111 0.84 0.00 35.57 3.53
383 437 2.282783 GGGCCTGCGGTTTTTCCAT 61.283 57.895 0.84 0.00 35.57 3.41
384 438 1.079888 GGCCTGCGGTTTTTCCATG 60.080 57.895 0.00 0.00 35.57 3.66
385 439 1.079888 GCCTGCGGTTTTTCCATGG 60.080 57.895 4.97 4.97 35.57 3.66
386 440 1.815817 GCCTGCGGTTTTTCCATGGT 61.816 55.000 12.58 0.00 35.57 3.55
387 441 0.038343 CCTGCGGTTTTTCCATGGTG 60.038 55.000 12.58 0.00 35.57 4.17
438 505 9.991388 TTTTTAACATATTATTACTGGTGCGTC 57.009 29.630 0.00 0.00 0.00 5.19
444 511 0.739813 ATTACTGGTGCGTCGAAGCC 60.740 55.000 20.62 11.50 36.02 4.35
448 515 2.357034 GGTGCGTCGAAGCCAAGA 60.357 61.111 20.62 0.00 36.02 3.02
487 554 3.384467 CAGAGGAAAAGGCTAGAGAGAGG 59.616 52.174 0.00 0.00 0.00 3.69
551 623 2.096268 ACGTTGAGTCATTGACATTGCG 60.096 45.455 18.57 17.27 34.60 4.85
552 624 2.157474 CGTTGAGTCATTGACATTGCGA 59.843 45.455 18.57 2.87 34.60 5.10
553 625 3.482786 GTTGAGTCATTGACATTGCGAC 58.517 45.455 18.57 10.42 34.60 5.19
554 626 1.726248 TGAGTCATTGACATTGCGACG 59.274 47.619 18.57 0.00 34.60 5.12
596 671 4.093952 CGGCTTTGGCAGTCGCAG 62.094 66.667 6.98 0.06 45.42 5.18
597 672 3.741476 GGCTTTGGCAGTCGCAGG 61.741 66.667 6.98 0.00 41.24 4.85
622 703 1.142314 GCAGAGAGCAGAGCAGAGG 59.858 63.158 0.00 0.00 44.79 3.69
623 704 1.142314 CAGAGAGCAGAGCAGAGGC 59.858 63.158 0.00 0.00 41.61 4.70
624 705 1.305129 AGAGAGCAGAGCAGAGGCA 60.305 57.895 0.00 0.00 44.61 4.75
625 706 1.142314 GAGAGCAGAGCAGAGGCAG 59.858 63.158 0.00 0.00 44.61 4.85
644 725 4.821589 GCGGCCGAGGAGGAGTTG 62.822 72.222 33.48 0.00 45.00 3.16
651 732 3.323979 GGCCGAGGAGGAGTTGATAATAA 59.676 47.826 0.00 0.00 45.00 1.40
652 733 4.020128 GGCCGAGGAGGAGTTGATAATAAT 60.020 45.833 0.00 0.00 45.00 1.28
660 741 7.517604 AGGAGGAGTTGATAATAATACCACCAT 59.482 37.037 0.00 0.00 31.30 3.55
907 1014 4.077822 AGTGCATGGGAAGAAGAAGAAAG 58.922 43.478 0.00 0.00 0.00 2.62
1087 1210 3.463704 AGTCACCCTCTTCCCTTCTTTTT 59.536 43.478 0.00 0.00 0.00 1.94
1088 1211 3.821600 GTCACCCTCTTCCCTTCTTTTTC 59.178 47.826 0.00 0.00 0.00 2.29
1091 1214 4.279420 CACCCTCTTCCCTTCTTTTTCTTG 59.721 45.833 0.00 0.00 0.00 3.02
1095 1218 5.830457 CCTCTTCCCTTCTTTTTCTTGTCTT 59.170 40.000 0.00 0.00 0.00 3.01
1096 1219 6.238869 CCTCTTCCCTTCTTTTTCTTGTCTTG 60.239 42.308 0.00 0.00 0.00 3.02
1098 1221 6.663523 TCTTCCCTTCTTTTTCTTGTCTTGTT 59.336 34.615 0.00 0.00 0.00 2.83
1100 1223 5.949354 TCCCTTCTTTTTCTTGTCTTGTTCA 59.051 36.000 0.00 0.00 0.00 3.18
1101 1224 6.607198 TCCCTTCTTTTTCTTGTCTTGTTCAT 59.393 34.615 0.00 0.00 0.00 2.57
1106 1229 7.923888 TCTTTTTCTTGTCTTGTTCATCTCTG 58.076 34.615 0.00 0.00 0.00 3.35
1107 1230 6.624352 TTTTCTTGTCTTGTTCATCTCTGG 57.376 37.500 0.00 0.00 0.00 3.86
1108 1231 3.668447 TCTTGTCTTGTTCATCTCTGGC 58.332 45.455 0.00 0.00 0.00 4.85
1109 1232 2.084610 TGTCTTGTTCATCTCTGGCG 57.915 50.000 0.00 0.00 0.00 5.69
1110 1233 1.344438 TGTCTTGTTCATCTCTGGCGT 59.656 47.619 0.00 0.00 0.00 5.68
1111 1234 2.224281 TGTCTTGTTCATCTCTGGCGTT 60.224 45.455 0.00 0.00 0.00 4.84
1112 1235 2.158449 GTCTTGTTCATCTCTGGCGTTG 59.842 50.000 0.00 0.00 0.00 4.10
1113 1236 0.874390 TTGTTCATCTCTGGCGTTGC 59.126 50.000 0.00 0.00 0.00 4.17
1145 1272 0.947244 CGTTGCTTCCTGCTCAAACT 59.053 50.000 0.00 0.00 43.37 2.66
1146 1273 1.334869 CGTTGCTTCCTGCTCAAACTT 59.665 47.619 0.00 0.00 43.37 2.66
1150 1277 1.956477 GCTTCCTGCTCAAACTTTGGA 59.044 47.619 1.62 0.00 38.95 3.53
1151 1278 2.560105 GCTTCCTGCTCAAACTTTGGAT 59.440 45.455 1.62 0.00 38.95 3.41
1217 1353 1.218047 CCGCTTCTCCGGTTCATGA 59.782 57.895 0.00 0.00 43.24 3.07
1301 1437 2.677037 CGTTTCCCCGCTAGATTCTTGT 60.677 50.000 0.00 0.00 0.00 3.16
1326 1462 0.597072 ACACCGTCGTCCTCTTTCTC 59.403 55.000 0.00 0.00 0.00 2.87
1360 1502 0.250234 TCCCGGTGAGATTCTTGCAG 59.750 55.000 0.00 0.00 0.00 4.41
1413 1557 1.137872 CAGAGCTTCTAGAATGGCGGT 59.862 52.381 5.44 0.00 0.00 5.68
1451 1595 2.507484 TCTTGCATCACCACCTTCTTG 58.493 47.619 0.00 0.00 0.00 3.02
1470 1614 0.390340 GCTCCGACTGTCATGCTTGA 60.390 55.000 8.73 0.00 0.00 3.02
1472 1616 0.969149 TCCGACTGTCATGCTTGAGT 59.031 50.000 8.73 0.00 30.85 3.41
1473 1617 1.073964 CCGACTGTCATGCTTGAGTG 58.926 55.000 8.73 1.81 30.85 3.51
1474 1618 0.441533 CGACTGTCATGCTTGAGTGC 59.558 55.000 8.73 0.00 30.85 4.40
1475 1619 0.441533 GACTGTCATGCTTGAGTGCG 59.558 55.000 1.91 0.00 35.36 5.34
1476 1620 0.250038 ACTGTCATGCTTGAGTGCGT 60.250 50.000 1.91 0.00 35.36 5.24
1495 1660 1.478916 GTCTCTTCCTCCTGTACCAGC 59.521 57.143 0.00 0.00 0.00 4.85
1510 1675 5.381757 TGTACCAGCTTATGTGGAGTTTTT 58.618 37.500 0.00 0.00 38.57 1.94
1516 1681 3.367395 GCTTATGTGGAGTTTTTGGCCTC 60.367 47.826 3.32 0.00 0.00 4.70
1540 1705 2.418368 TGCGCTTGGATCTTGGTTAT 57.582 45.000 9.73 0.00 0.00 1.89
1542 1707 3.879998 TGCGCTTGGATCTTGGTTATTA 58.120 40.909 9.73 0.00 0.00 0.98
1543 1708 3.876914 TGCGCTTGGATCTTGGTTATTAG 59.123 43.478 9.73 0.00 0.00 1.73
1544 1709 4.127171 GCGCTTGGATCTTGGTTATTAGA 58.873 43.478 0.00 0.00 0.00 2.10
1573 1739 3.058983 TCGATTGCTAATGCGCCATAAAG 60.059 43.478 4.18 1.80 43.34 1.85
1575 1741 4.378770 CGATTGCTAATGCGCCATAAAGAT 60.379 41.667 4.18 0.00 43.34 2.40
1576 1742 3.902261 TGCTAATGCGCCATAAAGATG 57.098 42.857 4.18 0.00 43.34 2.90
1578 1744 4.074259 TGCTAATGCGCCATAAAGATGAT 58.926 39.130 4.18 0.00 43.34 2.45
1579 1745 4.154737 TGCTAATGCGCCATAAAGATGATC 59.845 41.667 4.18 0.00 43.34 2.92
1602 1769 2.625790 TGCTCCAAAATACGGCTGTTTT 59.374 40.909 1.99 0.00 0.00 2.43
1603 1770 2.986479 GCTCCAAAATACGGCTGTTTTG 59.014 45.455 1.99 9.70 42.21 2.44
1604 1771 2.986479 CTCCAAAATACGGCTGTTTTGC 59.014 45.455 14.76 0.00 41.58 3.68
1679 1850 1.017177 TGTGTGCGCCGTTTCTATCC 61.017 55.000 4.18 0.00 0.00 2.59
1700 1875 2.039084 CCTACCAGTTTCTGCCTTGTCT 59.961 50.000 0.00 0.00 0.00 3.41
1799 1977 9.173021 CTAGCACTATGATACTAGTAGCAGAAT 57.827 37.037 23.83 8.89 34.74 2.40
1869 2047 3.062042 GGATTAGTTGTTCGTGTCCGTT 58.938 45.455 0.00 0.00 35.01 4.44
1882 2060 1.669760 TCCGTTCCATTGTCGCCAC 60.670 57.895 0.00 0.00 0.00 5.01
2054 2277 1.304713 CCATGGCTGCCTTTCACCT 60.305 57.895 21.03 0.00 0.00 4.00
2111 2334 7.386025 CCCAAAAGAATGATTGACTTCCTTTTC 59.614 37.037 0.00 0.00 0.00 2.29
2184 2410 4.075682 CGGAATAGATCTGAGTGCTAGGA 58.924 47.826 5.18 0.00 36.44 2.94
2450 2728 1.370609 CAGAGCTTGAGCCTGACATG 58.629 55.000 13.03 0.00 43.38 3.21
2478 2756 1.136695 TCTTGGCAAGGTGCTTTTGTG 59.863 47.619 25.92 0.00 44.28 3.33
2518 2796 4.492646 AGAAACATTGGAAAGGGATGGTT 58.507 39.130 0.00 0.00 0.00 3.67
2623 3014 0.105964 TGTCCTGTTCACCAACTCCG 59.894 55.000 0.00 0.00 33.17 4.63
2627 3018 0.393077 CTGTTCACCAACTCCGGACT 59.607 55.000 0.00 0.00 33.17 3.85
2662 3053 1.202927 TCTTCCCTTTGCTGAACTGGG 60.203 52.381 0.00 0.00 39.22 4.45
2735 3130 7.773489 TTTTCCTCCATTATTGATGTGTTGA 57.227 32.000 0.00 0.00 33.71 3.18
2736 3131 7.395190 TTTCCTCCATTATTGATGTGTTGAG 57.605 36.000 0.00 0.00 33.71 3.02
2791 3186 1.977188 TCATGTCTACGCTGTTGTCG 58.023 50.000 0.00 0.00 0.00 4.35
2799 3194 0.096281 ACGCTGTTGTCGTGTGTTTG 59.904 50.000 0.00 0.00 38.88 2.93
2804 3199 2.004017 TGTTGTCGTGTGTTTGGAGAC 58.996 47.619 0.00 0.00 0.00 3.36
2832 3228 4.534500 ACTAGTCATGGTTTATGGGTGACA 59.466 41.667 6.58 0.00 41.12 3.58
2865 3261 0.179094 TCGGGCATGTGTAATCGACC 60.179 55.000 0.00 0.00 0.00 4.79
2867 3263 1.641677 GGCATGTGTAATCGACCGC 59.358 57.895 0.00 0.00 0.00 5.68
2888 3284 4.264614 CGCGTTAACGTAATCTCAGATGTT 59.735 41.667 27.28 0.00 42.22 2.71
2934 3330 2.568623 TTTTCCTGAGCTTCTCCACC 57.431 50.000 0.00 0.00 0.00 4.61
2937 3333 1.661463 TCCTGAGCTTCTCCACCATT 58.339 50.000 0.00 0.00 0.00 3.16
2950 3346 3.694926 TCCACCATTGATACATGTTGCA 58.305 40.909 2.30 0.00 0.00 4.08
2954 3350 6.039605 TCCACCATTGATACATGTTGCATAAG 59.960 38.462 2.30 0.00 0.00 1.73
2976 3372 5.237048 AGCAAAATTGGTATGCGTGATTTT 58.763 33.333 0.00 0.00 44.60 1.82
2991 3387 3.245048 GTGATTTTGCGGTGAAAACCTTG 59.755 43.478 0.00 0.00 0.00 3.61
3006 3402 3.185880 ACCTTGTAGGAGCCTTGTAGA 57.814 47.619 0.00 0.00 37.67 2.59
3010 3406 2.536066 TGTAGGAGCCTTGTAGAAGCA 58.464 47.619 0.00 0.00 0.00 3.91
3058 3466 9.787532 TTGTATAAAACTAAATCTCAGCAATGC 57.212 29.630 0.00 0.00 0.00 3.56
3071 3479 1.679139 GCAATGCTACCATGGCTACA 58.321 50.000 13.04 7.72 43.69 2.74
3461 3871 1.616865 TCTACTGGGTCCTGTTTCACG 59.383 52.381 4.90 0.00 0.00 4.35
3658 4069 6.947464 TCTTAACAAGGTCTGCTTATAGCTT 58.053 36.000 0.00 0.00 42.97 3.74
3659 4070 8.074613 TCTTAACAAGGTCTGCTTATAGCTTA 57.925 34.615 0.00 0.00 42.97 3.09
3660 4071 8.537016 TCTTAACAAGGTCTGCTTATAGCTTAA 58.463 33.333 0.00 0.00 42.97 1.85
3661 4072 9.162764 CTTAACAAGGTCTGCTTATAGCTTAAA 57.837 33.333 0.00 0.00 42.97 1.52
3662 4073 7.617041 AACAAGGTCTGCTTATAGCTTAAAG 57.383 36.000 0.00 0.00 42.97 1.85
3663 4074 5.586643 ACAAGGTCTGCTTATAGCTTAAAGC 59.413 40.000 20.24 20.24 46.60 3.51
3664 4075 4.709250 AGGTCTGCTTATAGCTTAAAGCC 58.291 43.478 22.71 12.04 46.01 4.35
3665 4076 4.410555 AGGTCTGCTTATAGCTTAAAGCCT 59.589 41.667 22.71 13.48 46.01 4.58
3670 4081 8.123575 GTCTGCTTATAGCTTAAAGCCTTAAAC 58.876 37.037 22.71 13.20 46.01 2.01
3724 4135 8.212312 TGTGTTGAATCAAGTAAAACCTACCTA 58.788 33.333 0.00 0.00 0.00 3.08
3781 4192 4.841443 AAACTTTAGTTTTACCAGGGCG 57.159 40.909 2.10 0.00 45.07 6.13
3806 4217 7.027760 GTCAGTTAGCTATTTAAAACTTGCCC 58.972 38.462 0.00 0.00 29.93 5.36
3842 4253 6.065976 TGTTTCAGACTCCCATGACAATAT 57.934 37.500 0.00 0.00 0.00 1.28
3857 4268 8.918658 CCATGACAATATTTCAACTGAAAACAG 58.081 33.333 8.84 0.00 45.81 3.16
4280 4692 4.753233 CAGAGTACCTTGGAATGACTGAG 58.247 47.826 0.00 0.00 0.00 3.35
4283 4695 4.168101 AGTACCTTGGAATGACTGAGGAA 58.832 43.478 0.00 0.00 0.00 3.36
4409 4821 3.468071 TTACCTTGGTCTGAGGAGCTA 57.532 47.619 0.00 0.00 40.29 3.32
4451 4863 0.238289 ACGCCATTGCTTCAAAGACG 59.762 50.000 0.00 0.00 34.43 4.18
4466 4878 1.153549 GACGTCTGTGGATCCTGCC 60.154 63.158 14.23 1.40 0.00 4.85
4709 5121 1.868251 GCCAGACTCTTACGACGCG 60.868 63.158 3.53 3.53 0.00 6.01
4850 5262 5.665812 AGTTGCTATATTAGTTGGGTCTGGA 59.334 40.000 0.00 0.00 0.00 3.86
4893 5305 4.533707 TCATGAGAAGGATCAGTTTCCAGT 59.466 41.667 0.00 0.00 38.32 4.00
4935 5347 0.887836 TCTCTTGTTGCCTGCTGCTG 60.888 55.000 0.00 0.00 42.00 4.41
4936 5348 0.887836 CTCTTGTTGCCTGCTGCTGA 60.888 55.000 8.20 0.00 42.00 4.26
4946 5358 2.271497 GCTGCTGAGCCCAGTGAT 59.729 61.111 0.23 0.00 42.35 3.06
5003 5415 4.836125 TCAGAGATTTGTTGCAAGAACC 57.164 40.909 8.78 4.30 0.00 3.62
5054 5466 8.274939 GTCGAGAAATCTGATGAGAAAATGATC 58.725 37.037 0.00 0.00 0.00 2.92
5156 5568 4.006319 CAGACCTTGAATTCTCCACCTTC 58.994 47.826 7.05 0.00 0.00 3.46
5159 5571 2.744202 CCTTGAATTCTCCACCTTCGTG 59.256 50.000 7.05 0.00 39.91 4.35
5304 5716 5.044558 GCTGTCAGTACTTTCTGCTATACC 58.955 45.833 14.37 0.00 35.63 2.73
5366 5780 9.371136 CTGAAACATAGTTATGCTAGTCTTTGA 57.629 33.333 0.00 0.00 37.19 2.69
5452 5868 4.563061 GCACCTGATCATTTGCTTCTTTT 58.437 39.130 17.45 0.00 32.00 2.27
5469 5885 6.462347 GCTTCTTTTTAACCAGGAACATCCAA 60.462 38.462 0.00 0.00 39.61 3.53
5483 5899 6.041979 AGGAACATCCAAACATAAACAAAGCT 59.958 34.615 0.00 0.00 39.61 3.74
5634 6050 2.474712 GTTCAAGCAGCGCGGTAC 59.525 61.111 11.92 5.10 0.00 3.34
5638 6054 3.382832 AAGCAGCGCGGTACCTCT 61.383 61.111 11.92 2.93 0.00 3.69
5655 6071 0.035725 TCTAACTGACGGCGGAGAGA 60.036 55.000 13.24 2.29 0.00 3.10
5696 6112 2.292267 CAGGAACAAAGTGAGCACTGT 58.708 47.619 3.57 0.00 41.58 3.55
5757 6173 2.103042 GTGACAGGCCTAAGCGCAG 61.103 63.158 11.47 0.00 41.24 5.18
5768 6184 2.516048 TAAGCGCAGGAGGAGAGGGT 62.516 60.000 11.47 0.00 0.00 4.34
5816 6232 1.268079 GGCAGAAACAGCTTCAAGGAC 59.732 52.381 0.00 0.00 36.40 3.85
5819 6235 2.551459 CAGAAACAGCTTCAAGGACCAG 59.449 50.000 0.00 0.00 36.40 4.00
5822 6238 0.109342 ACAGCTTCAAGGACCAGGTG 59.891 55.000 0.00 7.10 41.01 4.00
5876 6292 2.165998 GGCAGAAACAGCTTCAAGGAT 58.834 47.619 0.00 0.00 36.40 3.24
5903 6319 4.025858 GGCCTCCTGCTGCAGTCA 62.026 66.667 26.41 12.72 40.92 3.41
6091 6508 4.475345 TCATAGGCCTCTTCTTACTCCTC 58.525 47.826 9.68 0.00 0.00 3.71
6093 6513 0.747852 GGCCTCTTCTTACTCCTCCG 59.252 60.000 0.00 0.00 0.00 4.63
6094 6514 0.747852 GCCTCTTCTTACTCCTCCGG 59.252 60.000 0.00 0.00 0.00 5.14
6102 6522 0.976073 TTACTCCTCCGGCCTCTTGG 60.976 60.000 0.00 0.00 0.00 3.61
6146 6566 6.056236 AGGTTTGTACAGGAAAGAGAAGTTC 58.944 40.000 0.00 0.00 0.00 3.01
6161 6581 8.946860 AAGAGAAGTTCTCAGCTGATGCTCAC 62.947 46.154 29.85 9.52 45.73 3.51
6188 6608 1.073722 TTTGCTCCCTGCTCTGGTG 59.926 57.895 0.00 0.00 43.37 4.17
6245 6665 2.358267 AGCTCAATATGCTGCTTTCTGC 59.642 45.455 0.00 0.00 39.56 4.26
6293 6716 6.691818 CGTAGCTTACCAGTGTATCTTAACTG 59.308 42.308 0.00 0.00 42.83 3.16
6306 6729 8.261522 GTGTATCTTAACTGGAGGAAAGATCTT 58.738 37.037 0.88 0.88 39.01 2.40
6307 6730 9.488762 TGTATCTTAACTGGAGGAAAGATCTTA 57.511 33.333 8.75 0.00 39.01 2.10
6308 6731 9.974980 GTATCTTAACTGGAGGAAAGATCTTAG 57.025 37.037 8.75 3.73 39.01 2.18
6309 6732 7.425224 TCTTAACTGGAGGAAAGATCTTAGG 57.575 40.000 8.75 0.00 0.00 2.69
6364 6787 8.528044 AAGAACAAGATAAAAGGGTTTGTGTA 57.472 30.769 0.00 0.00 32.75 2.90
6377 6800 6.296365 GGGTTTGTGTAAACACTAGTTCTC 57.704 41.667 13.95 0.00 44.86 2.87
6383 6806 5.066893 TGTGTAAACACTAGTTCTCGTGTCT 59.933 40.000 13.95 0.73 46.55 3.41
6384 6807 6.260714 TGTGTAAACACTAGTTCTCGTGTCTA 59.739 38.462 13.95 0.00 46.55 2.59
6385 6808 6.796072 GTGTAAACACTAGTTCTCGTGTCTAG 59.204 42.308 9.83 13.41 43.05 2.43
6386 6809 6.707608 TGTAAACACTAGTTCTCGTGTCTAGA 59.292 38.462 18.31 0.00 43.05 2.43
6387 6810 5.866335 AACACTAGTTCTCGTGTCTAGAG 57.134 43.478 18.31 14.82 43.05 2.43
6388 6811 3.685756 ACACTAGTTCTCGTGTCTAGAGC 59.314 47.826 18.31 2.78 40.06 4.09
6389 6812 3.685272 CACTAGTTCTCGTGTCTAGAGCA 59.315 47.826 18.31 0.00 36.17 4.26
6390 6813 3.936453 ACTAGTTCTCGTGTCTAGAGCAG 59.064 47.826 18.31 0.00 36.17 4.24
6391 6814 3.060736 AGTTCTCGTGTCTAGAGCAGA 57.939 47.619 0.00 0.00 35.79 4.26
6392 6815 3.413327 AGTTCTCGTGTCTAGAGCAGAA 58.587 45.455 0.00 0.00 34.17 3.02
6393 6816 4.013728 AGTTCTCGTGTCTAGAGCAGAAT 58.986 43.478 0.00 0.00 34.17 2.40
6394 6817 5.186942 AGTTCTCGTGTCTAGAGCAGAATA 58.813 41.667 0.00 0.00 34.17 1.75
6395 6818 5.648526 AGTTCTCGTGTCTAGAGCAGAATAA 59.351 40.000 0.00 0.00 34.17 1.40
6396 6819 6.320164 AGTTCTCGTGTCTAGAGCAGAATAAT 59.680 38.462 0.00 0.00 34.17 1.28
6397 6820 7.499563 AGTTCTCGTGTCTAGAGCAGAATAATA 59.500 37.037 0.00 0.00 34.17 0.98
6398 6821 7.192148 TCTCGTGTCTAGAGCAGAATAATAC 57.808 40.000 0.00 0.00 34.17 1.89
6399 6822 6.993308 TCTCGTGTCTAGAGCAGAATAATACT 59.007 38.462 0.00 0.00 34.17 2.12
6400 6823 7.171848 TCTCGTGTCTAGAGCAGAATAATACTC 59.828 40.741 0.00 0.00 34.17 2.59
6401 6824 6.205076 TCGTGTCTAGAGCAGAATAATACTCC 59.795 42.308 0.00 0.00 34.17 3.85
6402 6825 6.568844 CGTGTCTAGAGCAGAATAATACTCCC 60.569 46.154 0.00 0.00 34.17 4.30
6403 6826 6.492087 GTGTCTAGAGCAGAATAATACTCCCT 59.508 42.308 0.00 0.00 34.17 4.20
6404 6827 6.717540 TGTCTAGAGCAGAATAATACTCCCTC 59.282 42.308 0.00 0.00 34.17 4.30
6405 6828 6.152154 GTCTAGAGCAGAATAATACTCCCTCC 59.848 46.154 0.00 0.00 34.17 4.30
6406 6829 5.086598 AGAGCAGAATAATACTCCCTCCT 57.913 43.478 0.00 0.00 0.00 3.69
6407 6830 5.472347 AGAGCAGAATAATACTCCCTCCTT 58.528 41.667 0.00 0.00 0.00 3.36
6408 6831 5.908247 AGAGCAGAATAATACTCCCTCCTTT 59.092 40.000 0.00 0.00 0.00 3.11
6409 6832 6.042666 AGAGCAGAATAATACTCCCTCCTTTC 59.957 42.308 0.00 0.00 0.00 2.62
6410 6833 4.991687 GCAGAATAATACTCCCTCCTTTCG 59.008 45.833 0.00 0.00 0.00 3.46
6411 6834 5.453480 GCAGAATAATACTCCCTCCTTTCGT 60.453 44.000 0.00 0.00 0.00 3.85
6412 6835 6.239232 GCAGAATAATACTCCCTCCTTTCGTA 60.239 42.308 0.00 0.00 0.00 3.43
6413 6836 7.686127 GCAGAATAATACTCCCTCCTTTCGTAA 60.686 40.741 0.00 0.00 0.00 3.18
6414 6837 8.202137 CAGAATAATACTCCCTCCTTTCGTAAA 58.798 37.037 0.00 0.00 0.00 2.01
6415 6838 8.935741 AGAATAATACTCCCTCCTTTCGTAAAT 58.064 33.333 0.00 0.00 0.00 1.40
6416 6839 8.904099 AATAATACTCCCTCCTTTCGTAAATG 57.096 34.615 0.00 0.00 0.00 2.32
6417 6840 2.987232 ACTCCCTCCTTTCGTAAATGC 58.013 47.619 0.00 0.00 0.00 3.56
6418 6841 2.304761 ACTCCCTCCTTTCGTAAATGCA 59.695 45.455 0.00 0.00 0.00 3.96
6419 6842 3.244770 ACTCCCTCCTTTCGTAAATGCAA 60.245 43.478 0.00 0.00 0.00 4.08
6420 6843 3.343617 TCCCTCCTTTCGTAAATGCAAG 58.656 45.455 0.00 0.00 0.00 4.01
6421 6844 3.081804 CCCTCCTTTCGTAAATGCAAGT 58.918 45.455 0.00 0.00 0.00 3.16
6422 6845 3.127030 CCCTCCTTTCGTAAATGCAAGTC 59.873 47.826 0.00 0.00 0.00 3.01
6423 6846 4.003648 CCTCCTTTCGTAAATGCAAGTCT 58.996 43.478 0.00 0.00 0.00 3.24
6424 6847 4.455877 CCTCCTTTCGTAAATGCAAGTCTT 59.544 41.667 0.00 0.00 0.00 3.01
6425 6848 5.048713 CCTCCTTTCGTAAATGCAAGTCTTT 60.049 40.000 0.00 0.00 0.00 2.52
6426 6849 6.385649 TCCTTTCGTAAATGCAAGTCTTTT 57.614 33.333 0.00 0.00 0.00 2.27
6427 6850 6.801575 TCCTTTCGTAAATGCAAGTCTTTTT 58.198 32.000 0.00 0.00 0.00 1.94
6447 6870 6.817765 TTTTTAGAGATTTCAATGCGGACT 57.182 33.333 0.00 0.00 0.00 3.85
6448 6871 7.915293 TTTTTAGAGATTTCAATGCGGACTA 57.085 32.000 0.00 0.00 0.00 2.59
6449 6872 6.903883 TTTAGAGATTTCAATGCGGACTAC 57.096 37.500 0.00 0.00 0.00 2.73
6450 6873 4.744795 AGAGATTTCAATGCGGACTACT 57.255 40.909 0.00 0.00 0.00 2.57
6451 6874 4.437239 AGAGATTTCAATGCGGACTACTG 58.563 43.478 0.00 0.00 0.00 2.74
6452 6875 4.160439 AGAGATTTCAATGCGGACTACTGA 59.840 41.667 0.00 0.00 0.00 3.41
6453 6876 4.437239 AGATTTCAATGCGGACTACTGAG 58.563 43.478 0.00 0.00 0.00 3.35
6454 6877 3.678056 TTTCAATGCGGACTACTGAGT 57.322 42.857 0.00 0.00 39.20 3.41
6455 6878 2.654749 TCAATGCGGACTACTGAGTG 57.345 50.000 0.00 0.00 35.45 3.51
6456 6879 1.893137 TCAATGCGGACTACTGAGTGT 59.107 47.619 0.00 0.00 35.45 3.55
6457 6880 2.094700 TCAATGCGGACTACTGAGTGTC 60.095 50.000 0.00 0.96 35.45 3.67
6458 6881 0.452184 ATGCGGACTACTGAGTGTCG 59.548 55.000 0.00 0.00 35.45 4.35
6459 6882 0.604511 TGCGGACTACTGAGTGTCGA 60.605 55.000 0.00 0.00 35.45 4.20
6460 6883 0.179194 GCGGACTACTGAGTGTCGAC 60.179 60.000 9.11 9.11 35.45 4.20
6461 6884 1.440708 CGGACTACTGAGTGTCGACT 58.559 55.000 17.92 0.00 35.45 4.18
6474 6897 4.227538 AGTGTCGACTCACTCATTTTACG 58.772 43.478 17.92 0.00 44.07 3.18
6475 6898 3.979495 GTGTCGACTCACTCATTTTACGT 59.021 43.478 17.92 0.00 35.68 3.57
6476 6899 4.088213 GTGTCGACTCACTCATTTTACGTC 59.912 45.833 17.92 0.00 35.68 4.34
6477 6900 4.224433 GTCGACTCACTCATTTTACGTCA 58.776 43.478 8.70 0.00 0.00 4.35
6478 6901 4.857588 GTCGACTCACTCATTTTACGTCAT 59.142 41.667 8.70 0.00 0.00 3.06
6479 6902 6.025896 GTCGACTCACTCATTTTACGTCATA 58.974 40.000 8.70 0.00 0.00 2.15
6480 6903 6.691818 GTCGACTCACTCATTTTACGTCATAT 59.308 38.462 8.70 0.00 0.00 1.78
6481 6904 6.691388 TCGACTCACTCATTTTACGTCATATG 59.309 38.462 0.00 0.00 0.00 1.78
6482 6905 6.472486 CGACTCACTCATTTTACGTCATATGT 59.528 38.462 1.90 0.00 0.00 2.29
6483 6906 7.642586 CGACTCACTCATTTTACGTCATATGTA 59.357 37.037 1.90 0.00 0.00 2.29
6484 6907 8.858003 ACTCACTCATTTTACGTCATATGTAG 57.142 34.615 1.90 0.79 0.00 2.74
6485 6908 8.467598 ACTCACTCATTTTACGTCATATGTAGT 58.532 33.333 1.90 6.81 0.00 2.73
6486 6909 8.851960 TCACTCATTTTACGTCATATGTAGTC 57.148 34.615 1.90 0.00 0.00 2.59
6487 6910 7.919091 TCACTCATTTTACGTCATATGTAGTCC 59.081 37.037 1.90 0.00 0.00 3.85
6488 6911 6.916387 ACTCATTTTACGTCATATGTAGTCCG 59.084 38.462 1.90 1.94 0.00 4.79
6489 6912 6.798482 TCATTTTACGTCATATGTAGTCCGT 58.202 36.000 1.90 7.33 0.00 4.69
6490 6913 7.929159 TCATTTTACGTCATATGTAGTCCGTA 58.071 34.615 1.90 6.46 0.00 4.02
6491 6914 8.071967 TCATTTTACGTCATATGTAGTCCGTAG 58.928 37.037 1.90 0.00 33.09 3.51
6492 6915 6.925610 TTTACGTCATATGTAGTCCGTAGT 57.074 37.500 1.90 0.00 33.09 2.73
6493 6916 4.808077 ACGTCATATGTAGTCCGTAGTG 57.192 45.455 1.90 0.00 0.00 2.74
6494 6917 3.562973 ACGTCATATGTAGTCCGTAGTGG 59.437 47.826 1.90 0.00 40.09 4.00
6508 6931 6.452494 TCCGTAGTGGAAATCTCTAGAAAG 57.548 41.667 0.00 0.00 46.38 2.62
6509 6932 6.185511 TCCGTAGTGGAAATCTCTAGAAAGA 58.814 40.000 0.00 0.00 46.38 2.52
6510 6933 6.095160 TCCGTAGTGGAAATCTCTAGAAAGAC 59.905 42.308 0.00 0.00 46.38 3.01
6511 6934 6.095720 CCGTAGTGGAAATCTCTAGAAAGACT 59.904 42.308 0.00 0.00 42.00 3.24
6512 6935 7.363094 CCGTAGTGGAAATCTCTAGAAAGACTT 60.363 40.741 0.00 0.00 42.00 3.01
6513 6936 8.675504 CGTAGTGGAAATCTCTAGAAAGACTTA 58.324 37.037 0.00 0.00 0.00 2.24
6514 6937 9.791820 GTAGTGGAAATCTCTAGAAAGACTTAC 57.208 37.037 0.00 0.00 0.00 2.34
6515 6938 8.423906 AGTGGAAATCTCTAGAAAGACTTACA 57.576 34.615 0.00 0.00 0.00 2.41
6516 6939 9.041354 AGTGGAAATCTCTAGAAAGACTTACAT 57.959 33.333 0.00 0.00 0.00 2.29
6517 6940 9.660180 GTGGAAATCTCTAGAAAGACTTACATT 57.340 33.333 0.00 0.00 0.00 2.71
6525 6948 9.291664 CTCTAGAAAGACTTACATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
6526 6949 8.248945 TCTAGAAAGACTTACATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
6527 6950 7.001099 AGAAAGACTTACATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
6528 6951 7.097834 AGAAAGACTTACATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
6529 6952 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
6530 6953 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
6531 6954 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
6532 6955 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
6533 6956 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
6577 7000 6.567050 AGAACATGGATTACAATGATTGCAC 58.433 36.000 4.84 0.00 0.00 4.57
6578 7001 4.923893 ACATGGATTACAATGATTGCACG 58.076 39.130 4.84 0.00 0.00 5.34
6580 7003 4.880886 TGGATTACAATGATTGCACGAG 57.119 40.909 4.84 0.00 0.00 4.18
6600 7023 7.429340 GCACGAGTATATTTTTCATTTGAGGTG 59.571 37.037 0.00 0.00 0.00 4.00
6613 7036 3.433306 TTGAGGTGGATGTAACCCAAG 57.567 47.619 0.00 0.00 38.57 3.61
6614 7037 2.344592 TGAGGTGGATGTAACCCAAGT 58.655 47.619 0.00 0.00 38.57 3.16
6615 7038 2.039746 TGAGGTGGATGTAACCCAAGTG 59.960 50.000 0.00 0.00 38.57 3.16
6617 7040 1.173913 GTGGATGTAACCCAAGTGGC 58.826 55.000 0.00 0.00 37.83 5.01
6618 7041 1.072266 TGGATGTAACCCAAGTGGCT 58.928 50.000 0.00 0.00 37.83 4.75
6620 7043 2.092323 GGATGTAACCCAAGTGGCTTC 58.908 52.381 0.00 0.00 37.83 3.86
6621 7044 2.290960 GGATGTAACCCAAGTGGCTTCT 60.291 50.000 0.00 0.00 37.83 2.85
6622 7045 3.054655 GGATGTAACCCAAGTGGCTTCTA 60.055 47.826 0.00 0.00 37.83 2.10
6624 7047 4.015872 TGTAACCCAAGTGGCTTCTAAG 57.984 45.455 0.00 0.00 37.83 2.18
6670 7098 6.600822 TCAGATCAGAATGTTTTCAGGATTCC 59.399 38.462 0.00 0.00 37.40 3.01
6676 7104 2.222886 TGTTTTCAGGATTCCGCGAAA 58.777 42.857 8.23 15.35 31.46 3.46
6678 7106 1.161843 TTTCAGGATTCCGCGAAACC 58.838 50.000 8.23 8.57 35.18 3.27
6679 7107 0.675522 TTCAGGATTCCGCGAAACCC 60.676 55.000 8.23 0.00 35.48 4.11
6681 7109 2.045731 GGATTCCGCGAAACCCCA 60.046 61.111 8.23 0.00 29.81 4.96
6691 7145 2.680841 CGCGAAACCCCAAATCAATCTA 59.319 45.455 0.00 0.00 0.00 1.98
6772 7228 6.924111 ACACAACCCAAAATTCAGATGATAC 58.076 36.000 0.00 0.00 0.00 2.24
6804 7260 2.969628 ACGCAGCAGAGCTAATAACT 57.030 45.000 0.00 0.00 36.40 2.24
6812 7268 1.689273 AGAGCTAATAACTGAGGCGGG 59.311 52.381 0.00 0.00 0.00 6.13
6902 7360 9.103861 AGCAAAGCTAGTTTGTTATTATCTCTC 57.896 33.333 14.90 0.84 46.44 3.20
6905 7363 8.655651 AAGCTAGTTTGTTATTATCTCTCTGC 57.344 34.615 0.00 0.00 0.00 4.26
6906 7364 7.786030 AGCTAGTTTGTTATTATCTCTCTGCA 58.214 34.615 0.00 0.00 0.00 4.41
6907 7365 8.260818 AGCTAGTTTGTTATTATCTCTCTGCAA 58.739 33.333 0.00 0.00 0.00 4.08
6908 7366 8.331742 GCTAGTTTGTTATTATCTCTCTGCAAC 58.668 37.037 0.00 0.00 0.00 4.17
6909 7367 9.371136 CTAGTTTGTTATTATCTCTCTGCAACA 57.629 33.333 0.00 0.00 0.00 3.33
6910 7368 8.034058 AGTTTGTTATTATCTCTCTGCAACAC 57.966 34.615 0.00 0.00 0.00 3.32
6928 7392 0.106268 ACCAACACAGGTTCCATGCA 60.106 50.000 0.00 0.00 39.34 3.96
6980 7444 5.935789 AGCGTTTCCATTACAGCTTAACTAA 59.064 36.000 0.00 0.00 0.00 2.24
6981 7445 6.019762 GCGTTTCCATTACAGCTTAACTAAC 58.980 40.000 0.00 0.00 0.00 2.34
6982 7446 6.128363 GCGTTTCCATTACAGCTTAACTAACT 60.128 38.462 0.00 0.00 0.00 2.24
6984 7448 8.592998 CGTTTCCATTACAGCTTAACTAACTAG 58.407 37.037 0.00 0.00 0.00 2.57
6985 7449 9.433153 GTTTCCATTACAGCTTAACTAACTAGT 57.567 33.333 0.00 0.00 38.39 2.57
6989 7453 9.310716 CCATTACAGCTTAACTAACTAGTAACC 57.689 37.037 0.00 0.00 34.99 2.85
6990 7454 9.017669 CATTACAGCTTAACTAACTAGTAACCG 57.982 37.037 0.00 0.00 34.99 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 71 6.770785 AGAAAGGTGCAACAAACAATCTACTA 59.229 34.615 3.64 0.00 39.98 1.82
62 72 5.594317 AGAAAGGTGCAACAAACAATCTACT 59.406 36.000 3.64 0.00 39.98 2.57
63 73 5.831997 AGAAAGGTGCAACAAACAATCTAC 58.168 37.500 3.64 0.00 39.98 2.59
102 112 2.142761 TGTGCCTCACTGCCTCTGT 61.143 57.895 0.00 0.00 35.11 3.41
103 113 1.670406 GTGTGCCTCACTGCCTCTG 60.670 63.158 2.51 0.00 43.13 3.35
104 114 2.109517 CTGTGTGCCTCACTGCCTCT 62.110 60.000 9.82 0.00 46.27 3.69
105 115 1.670406 CTGTGTGCCTCACTGCCTC 60.670 63.158 9.82 0.00 46.27 4.70
106 116 2.429058 CTGTGTGCCTCACTGCCT 59.571 61.111 9.82 0.00 46.27 4.75
107 117 2.670934 CCTGTGTGCCTCACTGCC 60.671 66.667 9.82 0.00 46.27 4.85
108 118 3.360340 GCCTGTGTGCCTCACTGC 61.360 66.667 9.82 8.71 46.27 4.40
109 119 1.670406 GAGCCTGTGTGCCTCACTG 60.670 63.158 9.82 9.04 46.27 3.66
110 120 1.825281 GAGAGCCTGTGTGCCTCACT 61.825 60.000 9.82 0.00 46.27 3.41
111 121 1.375268 GAGAGCCTGTGTGCCTCAC 60.375 63.158 2.74 2.74 46.31 3.51
155 188 2.574955 GCCCCTCTGTCTGTCGTGT 61.575 63.158 0.00 0.00 0.00 4.49
256 305 4.021368 CGTGGTATACTGGGAAGGATTAGG 60.021 50.000 2.25 0.00 0.00 2.69
260 309 3.323774 TCGTGGTATACTGGGAAGGAT 57.676 47.619 2.25 0.00 0.00 3.24
261 310 2.832643 TCGTGGTATACTGGGAAGGA 57.167 50.000 2.25 0.00 0.00 3.36
262 311 2.963101 TGATCGTGGTATACTGGGAAGG 59.037 50.000 2.25 0.00 0.00 3.46
263 312 4.665833 TTGATCGTGGTATACTGGGAAG 57.334 45.455 2.25 0.00 0.00 3.46
264 313 4.223255 TGTTTGATCGTGGTATACTGGGAA 59.777 41.667 2.25 0.00 0.00 3.97
268 317 5.043903 CCTCTGTTTGATCGTGGTATACTG 58.956 45.833 2.25 0.00 0.00 2.74
269 318 4.954202 TCCTCTGTTTGATCGTGGTATACT 59.046 41.667 2.25 0.00 0.00 2.12
271 320 5.655090 TCTTCCTCTGTTTGATCGTGGTATA 59.345 40.000 0.00 0.00 0.00 1.47
273 322 3.830178 TCTTCCTCTGTTTGATCGTGGTA 59.170 43.478 0.00 0.00 0.00 3.25
274 323 2.632996 TCTTCCTCTGTTTGATCGTGGT 59.367 45.455 0.00 0.00 0.00 4.16
275 324 3.319137 TCTTCCTCTGTTTGATCGTGG 57.681 47.619 0.00 0.00 0.00 4.94
276 325 5.869753 ATTTCTTCCTCTGTTTGATCGTG 57.130 39.130 0.00 0.00 0.00 4.35
279 333 8.555361 GCATAGTATTTCTTCCTCTGTTTGATC 58.445 37.037 0.00 0.00 0.00 2.92
289 343 6.795000 AGAATAGGGGCATAGTATTTCTTCCT 59.205 38.462 0.00 0.00 0.00 3.36
301 355 7.881912 TTGGTTAGATTAGAATAGGGGCATA 57.118 36.000 0.00 0.00 0.00 3.14
303 357 6.584471 TTTGGTTAGATTAGAATAGGGGCA 57.416 37.500 0.00 0.00 0.00 5.36
312 366 9.042008 GCGATGATACTTTTTGGTTAGATTAGA 57.958 33.333 0.00 0.00 0.00 2.10
317 371 4.033587 GCGCGATGATACTTTTTGGTTAGA 59.966 41.667 12.10 0.00 0.00 2.10
318 372 4.271687 GCGCGATGATACTTTTTGGTTAG 58.728 43.478 12.10 0.00 0.00 2.34
319 373 3.064271 GGCGCGATGATACTTTTTGGTTA 59.936 43.478 12.10 0.00 0.00 2.85
320 374 2.159435 GGCGCGATGATACTTTTTGGTT 60.159 45.455 12.10 0.00 0.00 3.67
321 375 1.400494 GGCGCGATGATACTTTTTGGT 59.600 47.619 12.10 0.00 0.00 3.67
350 404 3.677648 CCCTTTTGCAGCAGCGCT 61.678 61.111 2.64 2.64 46.23 5.92
352 406 4.729856 GGCCCTTTTGCAGCAGCG 62.730 66.667 0.00 0.00 46.23 5.18
355 409 3.618750 GCAGGCCCTTTTGCAGCA 61.619 61.111 9.69 0.00 40.02 4.41
356 410 4.729856 CGCAGGCCCTTTTGCAGC 62.730 66.667 14.39 0.00 40.28 5.25
357 411 4.060038 CCGCAGGCCCTTTTGCAG 62.060 66.667 14.39 7.35 46.14 4.41
369 423 0.958091 TCACCATGGAAAAACCGCAG 59.042 50.000 21.47 0.00 42.61 5.18
370 424 0.958091 CTCACCATGGAAAAACCGCA 59.042 50.000 21.47 0.00 42.61 5.69
371 425 0.388520 GCTCACCATGGAAAAACCGC 60.389 55.000 21.47 6.94 42.61 5.68
372 426 0.958091 TGCTCACCATGGAAAAACCG 59.042 50.000 21.47 0.24 42.61 4.44
373 427 1.337167 GCTGCTCACCATGGAAAAACC 60.337 52.381 21.47 1.86 39.54 3.27
374 428 1.340889 TGCTGCTCACCATGGAAAAAC 59.659 47.619 21.47 4.13 0.00 2.43
375 429 1.614903 CTGCTGCTCACCATGGAAAAA 59.385 47.619 21.47 0.00 0.00 1.94
376 430 1.250328 CTGCTGCTCACCATGGAAAA 58.750 50.000 21.47 1.73 0.00 2.29
377 431 1.246056 GCTGCTGCTCACCATGGAAA 61.246 55.000 21.47 4.56 36.03 3.13
378 432 1.676635 GCTGCTGCTCACCATGGAA 60.677 57.895 21.47 4.97 36.03 3.53
379 433 2.045634 GCTGCTGCTCACCATGGA 60.046 61.111 21.47 0.00 36.03 3.41
380 434 2.360726 TGCTGCTGCTCACCATGG 60.361 61.111 11.19 11.19 40.48 3.66
381 435 3.052620 GCTGCTGCTGCTCACCATG 62.053 63.158 22.10 0.00 40.48 3.66
382 436 2.750637 GCTGCTGCTGCTCACCAT 60.751 61.111 22.10 0.00 40.48 3.55
383 437 4.259131 TGCTGCTGCTGCTCACCA 62.259 61.111 27.67 8.50 40.48 4.17
384 438 3.432588 CTGCTGCTGCTGCTCACC 61.433 66.667 27.67 3.96 40.48 4.02
428 495 3.454587 TTGGCTTCGACGCACCAGT 62.455 57.895 16.33 0.00 32.79 4.00
431 498 1.503818 TTTCTTGGCTTCGACGCACC 61.504 55.000 16.33 0.00 0.00 5.01
438 505 3.003689 TGCTCTTCTTTTTCTTGGCTTCG 59.996 43.478 0.00 0.00 0.00 3.79
444 511 3.002656 TGCGTCTGCTCTTCTTTTTCTTG 59.997 43.478 0.00 0.00 43.34 3.02
448 515 2.805099 CTCTGCGTCTGCTCTTCTTTTT 59.195 45.455 0.00 0.00 43.34 1.94
487 554 3.502211 GCAGTAGCAGTATCTCTCTCTCC 59.498 52.174 0.00 0.00 41.58 3.71
551 623 2.811317 CTGCTTGCTCCGTCCGTC 60.811 66.667 0.00 0.00 0.00 4.79
552 624 4.379243 CCTGCTTGCTCCGTCCGT 62.379 66.667 0.00 0.00 0.00 4.69
553 625 3.997064 CTCCTGCTTGCTCCGTCCG 62.997 68.421 0.00 0.00 0.00 4.79
554 626 2.125350 CTCCTGCTTGCTCCGTCC 60.125 66.667 0.00 0.00 0.00 4.79
591 666 2.677875 TCTGCTCTCTGCCTGCGA 60.678 61.111 0.00 0.00 42.00 5.10
594 669 1.142314 GCTCTCTGCTCTCTGCCTG 59.858 63.158 0.00 0.00 42.00 4.85
595 670 1.305129 TGCTCTCTGCTCTCTGCCT 60.305 57.895 0.00 0.00 43.37 4.75
596 671 1.142314 CTGCTCTCTGCTCTCTGCC 59.858 63.158 0.00 0.00 43.37 4.85
597 672 0.101759 CTCTGCTCTCTGCTCTCTGC 59.898 60.000 0.00 0.00 43.37 4.26
644 725 7.027874 TGGAAGGGATGGTGGTATTATTATC 57.972 40.000 0.00 0.00 0.00 1.75
651 732 1.782752 CCATGGAAGGGATGGTGGTAT 59.217 52.381 5.56 0.00 43.46 2.73
652 733 1.221635 CCATGGAAGGGATGGTGGTA 58.778 55.000 5.56 0.00 43.46 3.25
660 741 0.036164 CGTGTGAACCATGGAAGGGA 59.964 55.000 21.47 0.00 43.46 4.20
805 911 2.434884 CCCACCAGCAGTACGCAG 60.435 66.667 11.30 4.31 46.13 5.18
806 912 2.332312 AAACCCACCAGCAGTACGCA 62.332 55.000 11.30 0.00 46.13 5.24
807 913 1.170290 AAAACCCACCAGCAGTACGC 61.170 55.000 2.08 2.08 42.91 4.42
808 914 1.314730 AAAAACCCACCAGCAGTACG 58.685 50.000 0.00 0.00 0.00 3.67
830 936 2.586792 GGGAAGCAGAGCACGGAT 59.413 61.111 0.00 0.00 0.00 4.18
883 989 3.415212 TCTTCTTCTTCCCATGCACTTG 58.585 45.455 0.00 0.00 0.00 3.16
993 1116 4.869297 AGCTTCATGAACTTCATCTTCTCG 59.131 41.667 3.38 0.00 34.28 4.04
1087 1210 3.668447 GCCAGAGATGAACAAGACAAGA 58.332 45.455 0.00 0.00 0.00 3.02
1088 1211 2.414481 CGCCAGAGATGAACAAGACAAG 59.586 50.000 0.00 0.00 0.00 3.16
1091 1214 2.086054 ACGCCAGAGATGAACAAGAC 57.914 50.000 0.00 0.00 0.00 3.01
1095 1218 1.291184 CGCAACGCCAGAGATGAACA 61.291 55.000 0.00 0.00 0.00 3.18
1096 1219 1.291877 ACGCAACGCCAGAGATGAAC 61.292 55.000 0.00 0.00 0.00 3.18
1098 1221 1.446099 GACGCAACGCCAGAGATGA 60.446 57.895 0.00 0.00 0.00 2.92
1100 1223 2.125512 GGACGCAACGCCAGAGAT 60.126 61.111 0.00 0.00 0.00 2.75
1101 1224 2.835701 GATGGACGCAACGCCAGAGA 62.836 60.000 8.60 0.00 36.77 3.10
1106 1229 0.872021 CTAGAGATGGACGCAACGCC 60.872 60.000 0.00 0.00 0.00 5.68
1107 1230 1.483424 GCTAGAGATGGACGCAACGC 61.483 60.000 0.00 0.00 0.00 4.84
1108 1231 1.202973 CGCTAGAGATGGACGCAACG 61.203 60.000 0.00 0.00 0.00 4.10
1109 1232 0.179134 ACGCTAGAGATGGACGCAAC 60.179 55.000 0.00 0.00 0.00 4.17
1110 1233 0.530744 AACGCTAGAGATGGACGCAA 59.469 50.000 0.00 0.00 0.00 4.85
1111 1234 0.179137 CAACGCTAGAGATGGACGCA 60.179 55.000 0.00 0.00 0.00 5.24
1112 1235 1.483424 GCAACGCTAGAGATGGACGC 61.483 60.000 0.00 0.00 0.00 5.19
1113 1236 0.101399 AGCAACGCTAGAGATGGACG 59.899 55.000 0.00 0.00 36.99 4.79
1145 1272 1.347062 GCAGGGAAAACCCATCCAAA 58.653 50.000 8.05 0.00 41.63 3.28
1146 1273 0.897863 CGCAGGGAAAACCCATCCAA 60.898 55.000 8.05 0.00 41.63 3.53
1150 1277 2.679996 GGCGCAGGGAAAACCCAT 60.680 61.111 10.83 0.00 41.63 4.00
1167 1300 4.268522 CAAGAAACGTAAGACACCAAACG 58.731 43.478 0.00 0.00 43.62 3.60
1217 1353 4.070552 GAGGTTCTGCTCCGCCGT 62.071 66.667 0.00 0.00 0.00 5.68
1301 1437 1.512996 GAGGACGACGGTGTCTGTGA 61.513 60.000 0.00 0.00 38.91 3.58
1326 1462 2.674380 GGAGCACCAACCAGCAGG 60.674 66.667 0.00 0.00 37.22 4.85
1385 1529 2.020720 TCTAGAAGCTCTGCTCTTCCG 58.979 52.381 0.00 0.00 38.25 4.30
1451 1595 0.390340 TCAAGCATGACAGTCGGAGC 60.390 55.000 0.00 0.00 0.00 4.70
1470 1614 0.540830 ACAGGAGGAAGAGACGCACT 60.541 55.000 0.00 0.00 0.00 4.40
1472 1616 1.174783 GTACAGGAGGAAGAGACGCA 58.825 55.000 0.00 0.00 0.00 5.24
1473 1617 0.456628 GGTACAGGAGGAAGAGACGC 59.543 60.000 0.00 0.00 0.00 5.19
1474 1618 1.835494 TGGTACAGGAGGAAGAGACG 58.165 55.000 0.00 0.00 0.00 4.18
1495 1660 3.119849 CGAGGCCAAAAACTCCACATAAG 60.120 47.826 5.01 0.00 0.00 1.73
1540 1705 4.811969 TTAGCAATCGAACAGGGTCTAA 57.188 40.909 0.00 0.00 0.00 2.10
1542 1707 3.535561 CATTAGCAATCGAACAGGGTCT 58.464 45.455 0.00 0.00 0.00 3.85
1543 1708 2.032178 GCATTAGCAATCGAACAGGGTC 59.968 50.000 0.00 0.00 41.58 4.46
1544 1709 2.017049 GCATTAGCAATCGAACAGGGT 58.983 47.619 0.00 0.00 41.58 4.34
1573 1739 4.555511 GCCGTATTTTGGAGCAAGATCATC 60.556 45.833 0.00 0.00 0.00 2.92
1575 1741 2.682856 GCCGTATTTTGGAGCAAGATCA 59.317 45.455 0.00 0.00 0.00 2.92
1576 1742 2.945668 AGCCGTATTTTGGAGCAAGATC 59.054 45.455 0.00 0.00 0.00 2.75
1578 1744 2.083774 CAGCCGTATTTTGGAGCAAGA 58.916 47.619 0.00 0.00 0.00 3.02
1579 1745 1.812571 ACAGCCGTATTTTGGAGCAAG 59.187 47.619 0.00 0.00 0.00 4.01
1602 1769 3.973516 ACGCCGTGACTCGAAGCA 61.974 61.111 0.00 0.00 42.86 3.91
1603 1770 3.470567 CACGCCGTGACTCGAAGC 61.471 66.667 12.85 0.00 42.86 3.86
1604 1771 1.797933 CTCACGCCGTGACTCGAAG 60.798 63.158 17.22 1.25 37.67 3.79
1679 1850 2.039084 AGACAAGGCAGAAACTGGTAGG 59.961 50.000 0.00 0.00 31.21 3.18
1700 1875 3.650950 GGCAGGCAGAGGGGACAA 61.651 66.667 0.00 0.00 0.00 3.18
1869 2047 2.668632 GAGGGTGGCGACAATGGA 59.331 61.111 0.00 0.00 46.06 3.41
1948 2138 6.710295 TGAACTACAGCACATTACAACAAGAT 59.290 34.615 0.00 0.00 0.00 2.40
1963 2155 3.629398 CCCAAGGATGAATGAACTACAGC 59.371 47.826 0.00 0.00 0.00 4.40
2035 2258 2.353610 GGTGAAAGGCAGCCATGGG 61.354 63.158 15.80 0.00 39.07 4.00
2037 2260 0.529378 GAAGGTGAAAGGCAGCCATG 59.471 55.000 15.80 0.00 46.03 3.66
2038 2261 0.112995 TGAAGGTGAAAGGCAGCCAT 59.887 50.000 15.80 0.00 46.03 4.40
2054 2277 4.773013 TGATGCAGAGCAATCTACATGAA 58.227 39.130 0.00 0.00 43.62 2.57
2111 2334 4.795278 GCTGCATGTTCGGATTTAAAAGAG 59.205 41.667 0.00 0.00 0.00 2.85
2207 2433 7.980099 GCGTAGTGGCATCTACCTTATATTAAT 59.020 37.037 16.35 0.00 37.56 1.40
2208 2434 7.318141 GCGTAGTGGCATCTACCTTATATTAA 58.682 38.462 16.35 0.00 37.56 1.40
2272 2502 5.417894 CCTTCCTTGACAATAACTTAACCCC 59.582 44.000 0.00 0.00 0.00 4.95
2450 2728 2.162408 GCACCTTGCCAAGAAGATACAC 59.838 50.000 5.89 0.00 37.42 2.90
2478 2756 5.938125 TGTTTCTTCATCTAGTTAACTGGCC 59.062 40.000 18.56 0.00 0.00 5.36
2543 2821 6.784031 AGTGATTAACAAGGTCCAGAAATCT 58.216 36.000 0.00 0.00 0.00 2.40
2577 2968 3.200593 GCGATCAGCTGGCCACTG 61.201 66.667 22.21 22.21 44.04 3.66
2623 3014 1.268283 AAGCAGGGCACTAGGAGTCC 61.268 60.000 0.00 0.00 0.00 3.85
2627 3018 0.905357 GAAGAAGCAGGGCACTAGGA 59.095 55.000 0.00 0.00 0.00 2.94
2662 3053 0.931005 CGGCTCGCTTTCCAGTTATC 59.069 55.000 0.00 0.00 0.00 1.75
2735 3130 4.684724 TGTAAAGACCTCCACTACATCCT 58.315 43.478 0.00 0.00 0.00 3.24
2736 3131 4.680975 GCTGTAAAGACCTCCACTACATCC 60.681 50.000 0.00 0.00 0.00 3.51
2791 3186 0.582005 GTCGCTGTCTCCAAACACAC 59.418 55.000 0.00 0.00 0.00 3.82
2799 3194 1.066303 CCATGACTAGTCGCTGTCTCC 59.934 57.143 17.85 0.00 34.57 3.71
2804 3199 3.804325 CCATAAACCATGACTAGTCGCTG 59.196 47.826 17.85 16.27 36.69 5.18
2832 3228 1.805254 CCCGACCAACGTATCGACT 59.195 57.895 15.89 0.00 40.86 4.18
2865 3261 3.789756 ACATCTGAGATTACGTTAACGCG 59.210 43.478 27.07 3.53 44.43 6.01
2913 3309 3.181429 TGGTGGAGAAGCTCAGGAAAATT 60.181 43.478 0.00 0.00 31.08 1.82
2950 3346 5.574891 TCACGCATACCAATTTTGCTTAT 57.425 34.783 0.00 0.00 34.23 1.73
2954 3350 5.315195 CAAAATCACGCATACCAATTTTGC 58.685 37.500 6.08 0.00 39.22 3.68
2991 3387 3.828875 ATGCTTCTACAAGGCTCCTAC 57.171 47.619 0.00 0.00 0.00 3.18
3006 3402 2.116238 TCTTCTACCCGCCTAATGCTT 58.884 47.619 0.00 0.00 38.05 3.91
3010 3406 4.933505 GTAGTTCTTCTACCCGCCTAAT 57.066 45.455 0.00 0.00 42.13 1.73
3051 3448 1.212688 TGTAGCCATGGTAGCATTGCT 59.787 47.619 29.36 29.36 43.41 3.91
3053 3450 4.398988 TCTTTTGTAGCCATGGTAGCATTG 59.601 41.667 14.67 2.85 0.00 2.82
3058 3466 4.579869 ACACTCTTTTGTAGCCATGGTAG 58.420 43.478 14.67 0.36 0.00 3.18
3071 3479 6.575162 AACAGAACACAGAAACACTCTTTT 57.425 33.333 0.00 0.00 29.07 2.27
3461 3871 5.615325 GCTTGGCAGTGAAAATAATTTGTGC 60.615 40.000 0.00 0.00 0.00 4.57
3660 4071 9.750125 CAAATCACTTTCTTTAGTTTAAGGCTT 57.250 29.630 4.58 4.58 0.00 4.35
3661 4072 8.914011 ACAAATCACTTTCTTTAGTTTAAGGCT 58.086 29.630 0.00 0.00 0.00 4.58
3662 4073 8.968242 CACAAATCACTTTCTTTAGTTTAAGGC 58.032 33.333 0.00 0.00 0.00 4.35
3670 4081 8.909708 TTGACAACACAAATCACTTTCTTTAG 57.090 30.769 0.00 0.00 0.00 1.85
3724 4135 9.959721 AATATTAAGTACTGAAGTGTTCCATGT 57.040 29.630 0.00 0.00 0.00 3.21
3781 4192 7.027760 GGGCAAGTTTTAAATAGCTAACTGAC 58.972 38.462 0.00 0.00 31.64 3.51
3806 4217 7.435192 GGGAGTCTGAAACAACACTAAAATTTG 59.565 37.037 0.00 0.00 0.00 2.32
3816 4227 3.118075 TGTCATGGGAGTCTGAAACAACA 60.118 43.478 0.00 0.00 0.00 3.33
3857 4268 3.691609 CAGGGTATTCTTTCCTTCAGCAC 59.308 47.826 0.00 0.00 0.00 4.40
3996 4408 6.649557 TCAGATATTGCTCTGCATATGAGTTG 59.350 38.462 6.97 0.00 42.00 3.16
4045 4457 2.755836 ACAACAATCAACACAGACGC 57.244 45.000 0.00 0.00 0.00 5.19
4046 4458 4.151070 GCATACAACAATCAACACAGACG 58.849 43.478 0.00 0.00 0.00 4.18
4280 4692 3.895041 TCAAGTTCCCTTTGTCCATTTCC 59.105 43.478 0.00 0.00 0.00 3.13
4283 4695 6.953520 TGAATATCAAGTTCCCTTTGTCCATT 59.046 34.615 0.00 0.00 0.00 3.16
4409 4821 4.400251 TCGATACATCTACCGACAACCTTT 59.600 41.667 0.00 0.00 0.00 3.11
4451 4863 1.340405 ACATTGGCAGGATCCACAGAC 60.340 52.381 15.82 6.12 35.50 3.51
4466 4878 9.996554 TTATAACTGTATGACCAGGATACATTG 57.003 33.333 0.00 0.00 36.07 2.82
4709 5121 2.222678 CATGTAATCATCAGCGACCAGC 59.777 50.000 0.00 0.00 37.99 4.85
4775 5187 3.517100 AGCAACCTGAGCTCTTATCTGAA 59.483 43.478 16.19 0.00 38.01 3.02
4850 5262 2.699846 GAGCTCCTCCTTCACATGATCT 59.300 50.000 0.87 0.00 0.00 2.75
4893 5305 1.065401 CTTCACCGAAGCTTTGTGCAA 59.935 47.619 19.69 14.77 45.94 4.08
4946 5358 0.255604 ACCGAACATCATGGATGCCA 59.744 50.000 6.15 0.00 43.15 4.92
4952 5364 1.094785 GGACCAACCGAACATCATGG 58.905 55.000 0.00 0.00 37.19 3.66
5156 5568 1.585521 CGCCGTAGCTAGTTCCACG 60.586 63.158 0.00 0.00 36.60 4.94
5159 5571 1.226888 CACCGCCGTAGCTAGTTCC 60.227 63.158 0.00 0.00 36.60 3.62
5207 5619 1.060122 GCATCAACCGCGTAGTACAAC 59.940 52.381 4.92 0.00 0.00 3.32
5304 5716 9.752961 TTTATTAGCATCAAATGTCCATTCATG 57.247 29.630 0.00 1.32 0.00 3.07
5355 5769 5.277731 GCTTCCATGCTTATCAAAGACTAGC 60.278 44.000 0.00 0.00 34.37 3.42
5366 5780 4.226427 TCAAGTCTGCTTCCATGCTTAT 57.774 40.909 0.00 0.00 31.49 1.73
5452 5868 7.287927 TGTTTATGTTTGGATGTTCCTGGTTAA 59.712 33.333 0.00 0.00 37.46 2.01
5469 5885 8.770438 TTCTTTTTGTCAGCTTTGTTTATGTT 57.230 26.923 0.00 0.00 0.00 2.71
5483 5899 3.380142 GCCGCAAATCTTCTTTTTGTCA 58.620 40.909 0.00 0.00 36.63 3.58
5627 6043 0.247974 CGTCAGTTAGAGGTACCGCG 60.248 60.000 10.22 0.00 0.00 6.46
5629 6045 0.100146 GCCGTCAGTTAGAGGTACCG 59.900 60.000 6.18 0.00 0.00 4.02
5630 6046 0.100146 CGCCGTCAGTTAGAGGTACC 59.900 60.000 2.73 2.73 0.00 3.34
5631 6047 0.100146 CCGCCGTCAGTTAGAGGTAC 59.900 60.000 0.00 0.00 0.00 3.34
5632 6048 0.035152 TCCGCCGTCAGTTAGAGGTA 60.035 55.000 0.00 0.00 0.00 3.08
5634 6050 1.030488 TCTCCGCCGTCAGTTAGAGG 61.030 60.000 0.00 0.00 0.00 3.69
5638 6054 1.134367 CATTCTCTCCGCCGTCAGTTA 59.866 52.381 0.00 0.00 0.00 2.24
5674 6090 0.040958 GTGCTCACTTTGTTCCTGCG 60.041 55.000 0.00 0.00 0.00 5.18
5687 6103 1.597854 CCGCCTTTCACAGTGCTCA 60.598 57.895 0.00 0.00 0.00 4.26
5696 6112 1.912220 CCTGGGTATCCGCCTTTCA 59.088 57.895 0.00 0.00 35.24 2.69
5745 6161 3.453070 CTCCTCCTGCGCTTAGGCC 62.453 68.421 9.73 0.00 37.76 5.19
5757 6173 1.382009 GGTCCTCACCCTCTCCTCC 60.382 68.421 0.00 0.00 36.54 4.30
5816 6232 1.966451 GTTTCTGCCGACCACCTGG 60.966 63.158 0.00 0.00 42.17 4.45
5819 6235 2.617274 GCTGTTTCTGCCGACCACC 61.617 63.158 0.00 0.00 0.00 4.61
5822 6238 0.884704 TGAAGCTGTTTCTGCCGACC 60.885 55.000 5.84 0.00 36.71 4.79
5825 6241 0.239347 CCTTGAAGCTGTTTCTGCCG 59.761 55.000 5.84 0.00 36.71 5.69
5903 6319 1.202734 TCGAATATCCTCCTCGACCGT 60.203 52.381 0.00 0.00 36.72 4.83
5951 6367 0.040425 CTGAACCCTTGCCGTTTTCG 60.040 55.000 0.00 0.00 43.67 3.46
5954 6370 0.472471 TCTCTGAACCCTTGCCGTTT 59.528 50.000 0.00 0.00 0.00 3.60
6091 6508 1.905637 AAACTAAACCAAGAGGCCGG 58.094 50.000 0.00 0.00 39.06 6.13
6093 6513 3.687125 AGCTAAACTAAACCAAGAGGCC 58.313 45.455 0.00 0.00 39.06 5.19
6094 6514 5.461526 CAAAGCTAAACTAAACCAAGAGGC 58.538 41.667 0.00 0.00 39.06 4.70
6102 6522 6.889301 ACCTAACCCAAAGCTAAACTAAAC 57.111 37.500 0.00 0.00 0.00 2.01
6161 6581 2.145536 GCAGGGAGCAAACAAAAATGG 58.854 47.619 0.00 0.00 44.79 3.16
6188 6608 7.228308 CCTCCCTCACATATTTTCTCTTCATTC 59.772 40.741 0.00 0.00 0.00 2.67
6240 6660 4.299586 TGACTTGGATAACCATGCAGAA 57.700 40.909 4.98 0.00 46.34 3.02
6245 6665 4.074970 GGCCTATGACTTGGATAACCATG 58.925 47.826 0.00 3.64 46.34 3.66
6255 6678 0.753262 AGCTACGGGCCTATGACTTG 59.247 55.000 0.84 0.00 43.05 3.16
6293 6716 3.659841 ACCCTCCTAAGATCTTTCCTCC 58.340 50.000 14.36 0.00 0.00 4.30
6306 6729 3.173965 CAGAGAAGAACCAACCCTCCTA 58.826 50.000 0.00 0.00 0.00 2.94
6307 6730 1.981495 CAGAGAAGAACCAACCCTCCT 59.019 52.381 0.00 0.00 0.00 3.69
6308 6731 1.978580 TCAGAGAAGAACCAACCCTCC 59.021 52.381 0.00 0.00 0.00 4.30
6309 6732 3.771577 TTCAGAGAAGAACCAACCCTC 57.228 47.619 0.00 0.00 0.00 4.30
6364 6787 5.335035 GCTCTAGACACGAGAACTAGTGTTT 60.335 44.000 18.32 15.74 46.68 2.83
6371 6794 3.060736 TCTGCTCTAGACACGAGAACT 57.939 47.619 0.00 0.00 0.00 3.01
6377 6800 6.375377 GGAGTATTATTCTGCTCTAGACACG 58.625 44.000 0.00 0.00 34.43 4.49
6383 6806 6.220881 AGGAGGGAGTATTATTCTGCTCTA 57.779 41.667 0.00 0.00 0.00 2.43
6384 6807 5.086598 AGGAGGGAGTATTATTCTGCTCT 57.913 43.478 0.00 0.00 0.00 4.09
6385 6808 5.816955 AAGGAGGGAGTATTATTCTGCTC 57.183 43.478 0.00 0.00 0.00 4.26
6386 6809 5.221541 CGAAAGGAGGGAGTATTATTCTGCT 60.222 44.000 0.00 0.00 0.00 4.24
6387 6810 4.991687 CGAAAGGAGGGAGTATTATTCTGC 59.008 45.833 0.00 0.00 0.00 4.26
6388 6811 6.163135 ACGAAAGGAGGGAGTATTATTCTG 57.837 41.667 0.00 0.00 0.00 3.02
6389 6812 7.909485 TTACGAAAGGAGGGAGTATTATTCT 57.091 36.000 0.00 0.00 0.00 2.40
6390 6813 8.989980 CATTTACGAAAGGAGGGAGTATTATTC 58.010 37.037 0.00 0.00 0.00 1.75
6391 6814 7.444487 GCATTTACGAAAGGAGGGAGTATTATT 59.556 37.037 0.00 0.00 0.00 1.40
6392 6815 6.935208 GCATTTACGAAAGGAGGGAGTATTAT 59.065 38.462 0.00 0.00 0.00 1.28
6393 6816 6.126997 TGCATTTACGAAAGGAGGGAGTATTA 60.127 38.462 0.00 0.00 0.00 0.98
6394 6817 5.123936 GCATTTACGAAAGGAGGGAGTATT 58.876 41.667 0.00 0.00 0.00 1.89
6395 6818 4.163458 TGCATTTACGAAAGGAGGGAGTAT 59.837 41.667 0.00 0.00 0.00 2.12
6396 6819 3.516300 TGCATTTACGAAAGGAGGGAGTA 59.484 43.478 0.00 0.00 0.00 2.59
6397 6820 2.304761 TGCATTTACGAAAGGAGGGAGT 59.695 45.455 0.00 0.00 0.00 3.85
6398 6821 2.985896 TGCATTTACGAAAGGAGGGAG 58.014 47.619 0.00 0.00 0.00 4.30
6399 6822 3.244770 ACTTGCATTTACGAAAGGAGGGA 60.245 43.478 0.00 0.00 0.00 4.20
6400 6823 3.081804 ACTTGCATTTACGAAAGGAGGG 58.918 45.455 0.00 0.00 0.00 4.30
6401 6824 4.003648 AGACTTGCATTTACGAAAGGAGG 58.996 43.478 0.00 0.00 0.00 4.30
6402 6825 5.613358 AAGACTTGCATTTACGAAAGGAG 57.387 39.130 0.00 0.00 0.00 3.69
6403 6826 6.385649 AAAAGACTTGCATTTACGAAAGGA 57.614 33.333 0.00 0.00 0.00 3.36
6424 6847 6.817765 AGTCCGCATTGAAATCTCTAAAAA 57.182 33.333 0.00 0.00 0.00 1.94
6425 6848 7.064609 CAGTAGTCCGCATTGAAATCTCTAAAA 59.935 37.037 0.00 0.00 0.00 1.52
6426 6849 6.535150 CAGTAGTCCGCATTGAAATCTCTAAA 59.465 38.462 0.00 0.00 0.00 1.85
6427 6850 6.042777 CAGTAGTCCGCATTGAAATCTCTAA 58.957 40.000 0.00 0.00 0.00 2.10
6428 6851 5.359860 TCAGTAGTCCGCATTGAAATCTCTA 59.640 40.000 0.00 0.00 0.00 2.43
6429 6852 4.160439 TCAGTAGTCCGCATTGAAATCTCT 59.840 41.667 0.00 0.00 0.00 3.10
6430 6853 4.433615 TCAGTAGTCCGCATTGAAATCTC 58.566 43.478 0.00 0.00 0.00 2.75
6431 6854 4.081420 ACTCAGTAGTCCGCATTGAAATCT 60.081 41.667 0.00 0.00 0.00 2.40
6432 6855 4.033358 CACTCAGTAGTCCGCATTGAAATC 59.967 45.833 0.00 0.00 31.97 2.17
6433 6856 3.935203 CACTCAGTAGTCCGCATTGAAAT 59.065 43.478 0.00 0.00 31.97 2.17
6434 6857 3.244078 ACACTCAGTAGTCCGCATTGAAA 60.244 43.478 0.00 0.00 31.97 2.69
6435 6858 2.299013 ACACTCAGTAGTCCGCATTGAA 59.701 45.455 0.00 0.00 31.97 2.69
6436 6859 1.893137 ACACTCAGTAGTCCGCATTGA 59.107 47.619 0.00 0.00 31.97 2.57
6437 6860 2.263077 GACACTCAGTAGTCCGCATTG 58.737 52.381 0.00 0.00 31.97 2.82
6438 6861 1.135373 CGACACTCAGTAGTCCGCATT 60.135 52.381 2.86 0.00 31.97 3.56
6439 6862 0.452184 CGACACTCAGTAGTCCGCAT 59.548 55.000 2.86 0.00 31.97 4.73
6440 6863 0.604511 TCGACACTCAGTAGTCCGCA 60.605 55.000 2.86 0.00 31.97 5.69
6441 6864 0.179194 GTCGACACTCAGTAGTCCGC 60.179 60.000 11.55 0.00 31.97 5.54
6442 6865 1.440708 AGTCGACACTCAGTAGTCCG 58.559 55.000 19.50 0.00 31.97 4.79
6453 6876 3.979495 ACGTAAAATGAGTGAGTCGACAC 59.021 43.478 19.50 12.69 40.60 3.67
6454 6877 4.224433 GACGTAAAATGAGTGAGTCGACA 58.776 43.478 19.50 0.00 0.00 4.35
6455 6878 4.224433 TGACGTAAAATGAGTGAGTCGAC 58.776 43.478 7.70 7.70 0.00 4.20
6456 6879 4.492791 TGACGTAAAATGAGTGAGTCGA 57.507 40.909 0.00 0.00 0.00 4.20
6457 6880 6.472486 ACATATGACGTAAAATGAGTGAGTCG 59.528 38.462 10.38 0.00 0.00 4.18
6458 6881 7.757097 ACATATGACGTAAAATGAGTGAGTC 57.243 36.000 10.38 0.00 0.00 3.36
6459 6882 8.467598 ACTACATATGACGTAAAATGAGTGAGT 58.532 33.333 10.38 5.48 0.00 3.41
6460 6883 8.858003 ACTACATATGACGTAAAATGAGTGAG 57.142 34.615 10.38 5.03 0.00 3.51
6461 6884 7.919091 GGACTACATATGACGTAAAATGAGTGA 59.081 37.037 10.38 0.00 0.00 3.41
6462 6885 7.096599 CGGACTACATATGACGTAAAATGAGTG 60.097 40.741 10.38 3.51 0.00 3.51
6463 6886 6.916387 CGGACTACATATGACGTAAAATGAGT 59.084 38.462 10.38 8.47 0.00 3.41
6464 6887 6.916387 ACGGACTACATATGACGTAAAATGAG 59.084 38.462 10.38 6.16 32.30 2.90
6465 6888 6.798482 ACGGACTACATATGACGTAAAATGA 58.202 36.000 10.38 0.00 32.30 2.57
6466 6889 7.859377 ACTACGGACTACATATGACGTAAAATG 59.141 37.037 10.38 6.83 36.54 2.32
6467 6890 7.859377 CACTACGGACTACATATGACGTAAAAT 59.141 37.037 10.38 3.02 36.54 1.82
6468 6891 7.188834 CACTACGGACTACATATGACGTAAAA 58.811 38.462 10.38 0.00 36.54 1.52
6469 6892 6.238456 CCACTACGGACTACATATGACGTAAA 60.238 42.308 10.38 0.00 36.54 2.01
6470 6893 5.237127 CCACTACGGACTACATATGACGTAA 59.763 44.000 10.38 0.00 36.54 3.18
6471 6894 4.751600 CCACTACGGACTACATATGACGTA 59.248 45.833 10.38 13.45 36.56 3.57
6472 6895 3.562973 CCACTACGGACTACATATGACGT 59.437 47.826 10.38 13.07 36.56 4.34
6473 6896 3.811497 TCCACTACGGACTACATATGACG 59.189 47.826 10.38 8.12 39.64 4.35
6474 6897 5.762825 TTCCACTACGGACTACATATGAC 57.237 43.478 10.38 0.00 46.36 3.06
6475 6898 6.776116 AGATTTCCACTACGGACTACATATGA 59.224 38.462 10.38 0.00 46.36 2.15
6476 6899 6.982852 AGATTTCCACTACGGACTACATATG 58.017 40.000 0.00 0.00 46.36 1.78
6477 6900 7.005296 AGAGATTTCCACTACGGACTACATAT 58.995 38.462 0.00 0.00 46.36 1.78
6478 6901 6.363065 AGAGATTTCCACTACGGACTACATA 58.637 40.000 0.00 0.00 46.36 2.29
6479 6902 5.202004 AGAGATTTCCACTACGGACTACAT 58.798 41.667 0.00 0.00 46.36 2.29
6480 6903 4.597004 AGAGATTTCCACTACGGACTACA 58.403 43.478 0.00 0.00 46.36 2.74
6481 6904 6.054295 TCTAGAGATTTCCACTACGGACTAC 58.946 44.000 0.00 0.00 46.36 2.73
6482 6905 6.244552 TCTAGAGATTTCCACTACGGACTA 57.755 41.667 0.00 0.00 46.36 2.59
6483 6906 5.113446 TCTAGAGATTTCCACTACGGACT 57.887 43.478 0.00 0.00 46.36 3.85
6484 6907 5.831702 TTCTAGAGATTTCCACTACGGAC 57.168 43.478 0.00 0.00 46.36 4.79
6485 6908 6.095160 GTCTTTCTAGAGATTTCCACTACGGA 59.905 42.308 0.00 0.00 44.40 4.69
6486 6909 6.095720 AGTCTTTCTAGAGATTTCCACTACGG 59.904 42.308 0.00 0.00 0.00 4.02
6487 6910 7.090953 AGTCTTTCTAGAGATTTCCACTACG 57.909 40.000 0.00 0.00 0.00 3.51
6488 6911 9.791820 GTAAGTCTTTCTAGAGATTTCCACTAC 57.208 37.037 0.00 0.00 29.76 2.73
6489 6912 9.529823 TGTAAGTCTTTCTAGAGATTTCCACTA 57.470 33.333 0.00 0.00 29.76 2.74
6490 6913 8.423906 TGTAAGTCTTTCTAGAGATTTCCACT 57.576 34.615 0.00 0.00 29.76 4.00
6491 6914 9.660180 AATGTAAGTCTTTCTAGAGATTTCCAC 57.340 33.333 0.00 0.00 29.76 4.02
6499 6922 9.291664 CGTTCCTAAATGTAAGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
6500 6923 8.248945 CCGTTCCTAAATGTAAGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
6501 6924 8.248945 TCCGTTCCTAAATGTAAGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
6502 6925 8.125978 TCCGTTCCTAAATGTAAGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
6503 6926 7.001099 TCCGTTCCTAAATGTAAGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
6504 6927 6.313164 CCTCCGTTCCTAAATGTAAGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
6505 6928 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
6506 6929 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
6507 6930 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
6508 6931 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
6509 6932 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
6510 6933 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
6511 6934 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
6512 6935 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
6513 6936 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
6514 6937 4.344102 TGATACTCCCTCCGTTCCTAAATG 59.656 45.833 0.00 0.00 0.00 2.32
6515 6938 4.553678 TGATACTCCCTCCGTTCCTAAAT 58.446 43.478 0.00 0.00 0.00 1.40
6516 6939 3.958798 CTGATACTCCCTCCGTTCCTAAA 59.041 47.826 0.00 0.00 0.00 1.85
6517 6940 3.203710 TCTGATACTCCCTCCGTTCCTAA 59.796 47.826 0.00 0.00 0.00 2.69
6518 6941 2.781757 TCTGATACTCCCTCCGTTCCTA 59.218 50.000 0.00 0.00 0.00 2.94
6519 6942 1.569548 TCTGATACTCCCTCCGTTCCT 59.430 52.381 0.00 0.00 0.00 3.36
6520 6943 2.068834 TCTGATACTCCCTCCGTTCC 57.931 55.000 0.00 0.00 0.00 3.62
6521 6944 3.800604 GCAATCTGATACTCCCTCCGTTC 60.801 52.174 0.00 0.00 0.00 3.95
6522 6945 2.103263 GCAATCTGATACTCCCTCCGTT 59.897 50.000 0.00 0.00 0.00 4.44
6523 6946 1.689273 GCAATCTGATACTCCCTCCGT 59.311 52.381 0.00 0.00 0.00 4.69
6524 6947 1.688735 TGCAATCTGATACTCCCTCCG 59.311 52.381 0.00 0.00 0.00 4.63
6525 6948 2.038295 CCTGCAATCTGATACTCCCTCC 59.962 54.545 0.00 0.00 0.00 4.30
6526 6949 2.968574 TCCTGCAATCTGATACTCCCTC 59.031 50.000 0.00 0.00 0.00 4.30
6527 6950 2.703007 GTCCTGCAATCTGATACTCCCT 59.297 50.000 0.00 0.00 0.00 4.20
6528 6951 2.435805 TGTCCTGCAATCTGATACTCCC 59.564 50.000 0.00 0.00 0.00 4.30
6529 6952 3.118629 TGTGTCCTGCAATCTGATACTCC 60.119 47.826 0.00 0.00 0.00 3.85
6530 6953 4.128925 TGTGTCCTGCAATCTGATACTC 57.871 45.455 0.00 0.00 0.00 2.59
6531 6954 4.558226 TTGTGTCCTGCAATCTGATACT 57.442 40.909 0.00 0.00 0.00 2.12
6532 6955 4.937620 TCTTTGTGTCCTGCAATCTGATAC 59.062 41.667 0.00 0.00 0.00 2.24
6533 6956 5.164620 TCTTTGTGTCCTGCAATCTGATA 57.835 39.130 0.00 0.00 0.00 2.15
6577 7000 8.208718 TCCACCTCAAATGAAAAATATACTCG 57.791 34.615 0.00 0.00 0.00 4.18
6578 7001 9.956720 CATCCACCTCAAATGAAAAATATACTC 57.043 33.333 0.00 0.00 0.00 2.59
6600 7023 3.978876 AGCCACTTGGGTTACATCC 57.021 52.632 0.00 0.00 44.81 3.51
6617 7040 5.238214 GGCAGAATCAGTTATGGCTTAGAAG 59.762 44.000 2.64 0.00 45.46 2.85
6618 7041 5.126067 GGCAGAATCAGTTATGGCTTAGAA 58.874 41.667 2.64 0.00 45.46 2.10
6626 7049 5.608449 TCTGAGATGGCAGAATCAGTTATG 58.392 41.667 19.60 2.74 41.65 1.90
6628 7051 5.364735 TGATCTGAGATGGCAGAATCAGTTA 59.635 40.000 19.60 7.76 46.94 2.24
6670 7098 1.472480 AGATTGATTTGGGGTTTCGCG 59.528 47.619 0.00 0.00 0.00 5.87
6676 7104 4.524802 TGCAGATAGATTGATTTGGGGT 57.475 40.909 0.00 0.00 0.00 4.95
6678 7106 7.088905 GCTAAATGCAGATAGATTGATTTGGG 58.911 38.462 11.62 0.00 42.31 4.12
6679 7107 7.088905 GGCTAAATGCAGATAGATTGATTTGG 58.911 38.462 11.62 0.00 45.15 3.28
6681 7109 7.008941 AGGGCTAAATGCAGATAGATTGATTT 58.991 34.615 11.62 0.00 45.15 2.17
6772 7228 3.055591 CTGCTGCGTAGTAAGATCCATG 58.944 50.000 1.53 0.00 0.00 3.66
6804 7260 1.053424 ACTCAAGTTTACCCGCCTCA 58.947 50.000 0.00 0.00 0.00 3.86
6902 7360 0.817013 AACCTGTGTTGGTGTTGCAG 59.183 50.000 0.00 0.00 40.73 4.41
6905 7363 1.468985 TGGAACCTGTGTTGGTGTTG 58.531 50.000 0.00 0.00 40.73 3.33
6906 7364 2.031120 CATGGAACCTGTGTTGGTGTT 58.969 47.619 0.00 0.00 40.73 3.32
6907 7365 1.691196 CATGGAACCTGTGTTGGTGT 58.309 50.000 0.00 0.00 40.73 4.16
6908 7366 0.314935 GCATGGAACCTGTGTTGGTG 59.685 55.000 0.00 0.00 40.73 4.17
6909 7367 0.106268 TGCATGGAACCTGTGTTGGT 60.106 50.000 0.00 0.00 43.11 3.67
6910 7368 1.039068 TTGCATGGAACCTGTGTTGG 58.961 50.000 0.00 0.00 33.97 3.77
6928 7392 3.244700 CCTGAGAGAAGTGACCATTGGTT 60.245 47.826 10.29 0.00 35.25 3.67
6980 7444 0.333993 TCTGAGGGGCGGTTACTAGT 59.666 55.000 0.00 0.00 0.00 2.57
6981 7445 1.033574 CTCTGAGGGGCGGTTACTAG 58.966 60.000 0.00 0.00 0.00 2.57
6982 7446 1.041447 GCTCTGAGGGGCGGTTACTA 61.041 60.000 6.83 0.00 0.00 1.82
6984 7448 2.180159 TTGCTCTGAGGGGCGGTTAC 62.180 60.000 6.83 0.00 0.00 2.50
6985 7449 1.899437 CTTGCTCTGAGGGGCGGTTA 61.899 60.000 6.83 0.00 0.00 2.85
6987 7451 3.710722 CTTGCTCTGAGGGGCGGT 61.711 66.667 6.83 0.00 0.00 5.68
6988 7452 4.479993 CCTTGCTCTGAGGGGCGG 62.480 72.222 6.83 0.00 0.00 6.13
6989 7453 3.393970 TCCTTGCTCTGAGGGGCG 61.394 66.667 6.83 0.00 34.93 6.13
6990 7454 2.129555 TTGTCCTTGCTCTGAGGGGC 62.130 60.000 6.83 1.45 34.93 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.