Multiple sequence alignment - TraesCS5B01G222400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G222400 chr5B 100.000 2371 0 0 866 3236 397435746 397433376 0.000000e+00 4379.0
1 TraesCS5B01G222400 chr5B 100.000 519 0 0 1 519 397436611 397436093 0.000000e+00 959.0
2 TraesCS5B01G222400 chr5B 95.745 47 2 0 1964 2010 397434607 397434561 3.460000e-10 76.8
3 TraesCS5B01G222400 chr5B 95.745 47 2 0 2005 2051 397434648 397434602 3.460000e-10 76.8
4 TraesCS5B01G222400 chr5D 93.419 1717 56 13 866 2549 338246304 338244612 0.000000e+00 2492.0
5 TraesCS5B01G222400 chr5D 82.778 540 27 28 8 519 338246843 338246342 3.860000e-114 422.0
6 TraesCS5B01G222400 chr5D 89.506 324 10 10 2578 2879 338244379 338244058 3.920000e-104 388.0
7 TraesCS5B01G222400 chr5D 88.379 327 29 3 2913 3236 338244056 338243736 5.060000e-103 385.0
8 TraesCS5B01G222400 chr5D 84.298 121 19 0 3114 3234 338241635 338241515 5.670000e-23 119.0
9 TraesCS5B01G222400 chr5D 95.745 47 2 0 1964 2010 338245178 338245132 3.460000e-10 76.8
10 TraesCS5B01G222400 chr5A 92.830 1060 62 6 955 2010 439189402 439188353 0.000000e+00 1524.0
11 TraesCS5B01G222400 chr5A 88.011 709 33 15 2556 3236 439187614 439186930 0.000000e+00 791.0
12 TraesCS5B01G222400 chr5A 91.681 577 20 9 1999 2549 439188405 439187831 0.000000e+00 774.0
13 TraesCS5B01G222400 chr5A 81.378 537 41 27 6 519 439190328 439189828 1.820000e-102 383.0
14 TraesCS5B01G222400 chr5A 83.471 121 20 0 3114 3234 439184847 439184727 2.640000e-21 113.0
15 TraesCS5B01G222400 chr5A 91.176 68 4 2 5 71 303399829 303399895 1.240000e-14 91.6
16 TraesCS5B01G222400 chr5A 89.552 67 7 0 5 71 382069980 382070046 5.750000e-13 86.1
17 TraesCS5B01G222400 chr6D 90.000 70 7 0 8 77 65644193 65644124 1.240000e-14 91.6
18 TraesCS5B01G222400 chr6D 89.706 68 6 1 5 71 381997400 381997467 5.750000e-13 86.1
19 TraesCS5B01G222400 chr2B 90.909 66 6 0 8 73 712828538 712828473 4.450000e-14 89.8
20 TraesCS5B01G222400 chr2B 88.889 72 6 2 1 71 251374824 251374894 1.600000e-13 87.9
21 TraesCS5B01G222400 chr6A 87.838 74 8 1 5 77 523947540 523947613 5.750000e-13 86.1
22 TraesCS5B01G222400 chr2A 88.571 70 8 0 8 77 141506451 141506382 5.750000e-13 86.1
23 TraesCS5B01G222400 chr1A 88.571 70 8 0 8 77 395177582 395177513 5.750000e-13 86.1
24 TraesCS5B01G222400 chr3B 92.683 41 1 1 2556 2596 224484265 224484227 1.250000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G222400 chr5B 397433376 397436611 3235 True 1372.900000 4379 97.872500 1 3236 4 chr5B.!!$R1 3235
1 TraesCS5B01G222400 chr5D 338241515 338246843 5328 True 647.133333 2492 89.020833 8 3236 6 chr5D.!!$R1 3228
2 TraesCS5B01G222400 chr5A 439184727 439190328 5601 True 717.000000 1524 87.474200 6 3236 5 chr5A.!!$R1 3230

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 186 0.108756 GAACAGTACCGTGGAGGAGC 60.109 60.0 0.00 0.0 45.0 4.70 F
1277 1650 0.032615 TGGCCTTGTTTGTCCCTTGT 60.033 50.0 3.32 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 1880 1.134901 CCGAGTCCAGTCGAGAACG 59.865 63.158 5.35 0.0 42.85 3.95 R
2987 3643 1.101331 GCTTCCTTTGGATGGCTCAG 58.899 55.000 0.00 0.0 31.58 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 75 7.271936 CACGTTTTAGTGTGTTTGTTCATTT 57.728 32.000 0.00 0.00 37.35 2.32
74 76 8.383264 CACGTTTTAGTGTGTTTGTTCATTTA 57.617 30.769 0.00 0.00 37.35 1.40
77 79 9.828220 CGTTTTAGTGTGTTTGTTCATTTATTG 57.172 29.630 0.00 0.00 0.00 1.90
163 184 1.616865 CAAGAACAGTACCGTGGAGGA 59.383 52.381 0.00 0.00 45.00 3.71
165 186 0.108756 GAACAGTACCGTGGAGGAGC 60.109 60.000 0.00 0.00 45.00 4.70
166 187 1.874345 AACAGTACCGTGGAGGAGCG 61.874 60.000 0.00 0.00 45.00 5.03
167 188 2.044555 CAGTACCGTGGAGGAGCGA 61.045 63.158 0.00 0.00 45.00 4.93
169 190 2.439701 TACCGTGGAGGAGCGAGG 60.440 66.667 0.00 0.00 45.00 4.63
170 191 2.975265 TACCGTGGAGGAGCGAGGA 61.975 63.158 0.00 0.00 45.00 3.71
171 192 3.827898 CCGTGGAGGAGCGAGGAC 61.828 72.222 0.00 0.00 45.00 3.85
172 193 4.180946 CGTGGAGGAGCGAGGACG 62.181 72.222 0.00 0.00 42.93 4.79
173 194 2.750637 GTGGAGGAGCGAGGACGA 60.751 66.667 0.00 0.00 42.66 4.20
174 195 2.750637 TGGAGGAGCGAGGACGAC 60.751 66.667 0.00 0.00 42.66 4.34
222 244 1.301677 GCGGAAGGCAGAGTGGAAAG 61.302 60.000 0.00 0.00 42.87 2.62
241 263 2.409948 GTGGAACTTCATGGAGGGAG 57.590 55.000 5.84 0.00 0.00 4.30
242 264 1.065126 GTGGAACTTCATGGAGGGAGG 60.065 57.143 5.84 0.00 0.00 4.30
243 265 0.548510 GGAACTTCATGGAGGGAGGG 59.451 60.000 5.84 0.00 0.00 4.30
244 266 0.548510 GAACTTCATGGAGGGAGGGG 59.451 60.000 5.84 0.00 0.00 4.79
245 267 0.121197 AACTTCATGGAGGGAGGGGA 59.879 55.000 5.84 0.00 0.00 4.81
246 268 0.327000 ACTTCATGGAGGGAGGGGAG 60.327 60.000 5.84 0.00 0.00 4.30
247 269 1.004758 TTCATGGAGGGAGGGGAGG 59.995 63.158 0.00 0.00 0.00 4.30
248 270 2.449322 CATGGAGGGAGGGGAGGG 60.449 72.222 0.00 0.00 0.00 4.30
249 271 3.795924 ATGGAGGGAGGGGAGGGG 61.796 72.222 0.00 0.00 0.00 4.79
251 273 4.179599 GGAGGGAGGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
252 274 4.179599 GAGGGAGGGGAGGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
351 396 2.670934 CAGACCCAGCACCAGCAC 60.671 66.667 0.00 0.00 45.49 4.40
353 398 4.269523 GACCCAGCACCAGCACCA 62.270 66.667 0.00 0.00 45.49 4.17
354 399 4.275508 ACCCAGCACCAGCACCAG 62.276 66.667 0.00 0.00 45.49 4.00
952 1002 3.878667 CCGCCCTCCTGGATTCCC 61.879 72.222 0.00 0.00 35.39 3.97
953 1003 3.089874 CGCCCTCCTGGATTCCCA 61.090 66.667 0.00 0.00 40.95 4.37
1116 1483 2.359967 GGGGAGGGACAGGTTCGAG 61.360 68.421 0.00 0.00 0.00 4.04
1119 1486 1.507174 GAGGGACAGGTTCGAGTCG 59.493 63.158 6.09 6.09 35.63 4.18
1222 1592 2.416162 CGAACCTCTTCCTACTCTGCAC 60.416 54.545 0.00 0.00 0.00 4.57
1234 1604 3.482156 ACTCTGCACACAAGTTCATCT 57.518 42.857 0.00 0.00 0.00 2.90
1238 1608 6.000219 ACTCTGCACACAAGTTCATCTTATT 59.000 36.000 0.00 0.00 34.66 1.40
1272 1645 0.893727 ATCCGTGGCCTTGTTTGTCC 60.894 55.000 3.32 0.00 0.00 4.02
1273 1646 2.561037 CCGTGGCCTTGTTTGTCCC 61.561 63.158 3.32 0.00 0.00 4.46
1274 1647 1.528309 CGTGGCCTTGTTTGTCCCT 60.528 57.895 3.32 0.00 0.00 4.20
1275 1648 1.106944 CGTGGCCTTGTTTGTCCCTT 61.107 55.000 3.32 0.00 0.00 3.95
1276 1649 0.389025 GTGGCCTTGTTTGTCCCTTG 59.611 55.000 3.32 0.00 0.00 3.61
1277 1650 0.032615 TGGCCTTGTTTGTCCCTTGT 60.033 50.000 3.32 0.00 0.00 3.16
1278 1651 1.119684 GGCCTTGTTTGTCCCTTGTT 58.880 50.000 0.00 0.00 0.00 2.83
1279 1652 1.484653 GGCCTTGTTTGTCCCTTGTTT 59.515 47.619 0.00 0.00 0.00 2.83
1280 1653 2.549926 GCCTTGTTTGTCCCTTGTTTG 58.450 47.619 0.00 0.00 0.00 2.93
1281 1654 2.741553 GCCTTGTTTGTCCCTTGTTTGG 60.742 50.000 0.00 0.00 0.00 3.28
1282 1655 2.549926 CTTGTTTGTCCCTTGTTTGGC 58.450 47.619 0.00 0.00 0.00 4.52
1314 1697 0.371645 CGCCGCTGTTTGATCTTCTC 59.628 55.000 0.00 0.00 0.00 2.87
1461 1845 6.953743 CCGTGTCAATGAATTAGTTTAGTTCG 59.046 38.462 0.00 0.00 0.00 3.95
1495 1880 7.097834 GGACTAATGCCTTGGATACTGTATAC 58.902 42.308 2.95 2.95 37.61 1.47
1504 1889 5.663795 TGGATACTGTATACGTTCTCGAC 57.336 43.478 5.60 0.00 38.00 4.20
1524 1909 0.037734 TGGACTCGGAGCTGACACTA 59.962 55.000 4.58 0.00 0.00 2.74
1678 2063 7.880160 TGTTATGATCTGGTTTTATTCCCTG 57.120 36.000 0.00 0.00 0.00 4.45
1707 2092 2.810439 TTGGAAGTTTGGAATTGCGG 57.190 45.000 0.00 0.00 0.00 5.69
1749 2134 3.362693 GGAAGAAGTACAGTTCGTTTGCG 60.363 47.826 0.00 0.00 39.92 4.85
1794 2179 5.936956 ACATCACAGGCTAAAGAAGAAGAAG 59.063 40.000 0.00 0.00 0.00 2.85
1836 2221 0.709397 TGGGAATCAATGAAGGGCCA 59.291 50.000 6.18 0.00 0.00 5.36
1900 2285 6.757237 TCTGCAATGGTATGTTTTGAAATGT 58.243 32.000 0.00 0.00 0.00 2.71
1960 2345 1.536766 TCTGACATTTTTGCTGCCTCG 59.463 47.619 0.00 0.00 0.00 4.63
1966 2351 1.975660 TTTTTGCTGCCTCGTTACCT 58.024 45.000 0.00 0.00 0.00 3.08
1976 2361 0.373716 CTCGTTACCTGCCGAATTGC 59.626 55.000 0.00 0.00 31.92 3.56
2127 2521 6.314917 TCAGGCTGGTGTAGATGAAGATATA 58.685 40.000 15.73 0.00 0.00 0.86
2131 2525 6.820656 GGCTGGTGTAGATGAAGATATAATGG 59.179 42.308 0.00 0.00 0.00 3.16
2242 2636 1.608717 CTTGCAGGTCTAGTCCCGCT 61.609 60.000 14.18 0.00 0.00 5.52
2296 2706 3.016736 CCTGCCTGGTTTCGTCAAATAT 58.983 45.455 0.00 0.00 0.00 1.28
2306 2716 5.106078 GGTTTCGTCAAATATTTGCCCAGTA 60.106 40.000 21.15 2.46 38.05 2.74
2417 2827 4.623167 CACACTTAGACAAGTTCGATCCTG 59.377 45.833 0.00 0.00 42.51 3.86
2459 2869 1.280421 AGCCTGGATTTCAGAGTCACC 59.720 52.381 0.00 0.00 46.18 4.02
2460 2870 1.003580 GCCTGGATTTCAGAGTCACCA 59.996 52.381 0.00 0.00 46.18 4.17
2598 3222 7.995488 AGAAACAGAGGCAGTATAGCATTTTAT 59.005 33.333 0.00 0.00 35.83 1.40
2653 3277 3.118223 GGAAGGTCCTGGGTAATCTTCTG 60.118 52.174 6.79 0.00 32.53 3.02
2893 3546 2.742372 ACACGGCGATGTTCCAGC 60.742 61.111 16.62 0.00 0.00 4.85
2898 3551 1.741770 GGCGATGTTCCAGCGTTCT 60.742 57.895 3.76 0.00 45.34 3.01
2901 3554 1.990799 CGATGTTCCAGCGTTCTACA 58.009 50.000 0.00 0.00 38.50 2.74
2919 3572 1.810755 ACAGATGTTGCACTGCAGATG 59.189 47.619 23.35 15.73 40.61 2.90
2972 3628 0.850100 TCCACTTTCTCCCAAGGCAA 59.150 50.000 0.00 0.00 0.00 4.52
2987 3643 4.427312 CAAGGCAATTCATTCTTGCTACC 58.573 43.478 7.82 0.00 46.41 3.18
3006 3662 1.101331 CTGAGCCATCCAAAGGAAGC 58.899 55.000 3.90 3.90 34.34 3.86
3012 3668 2.947243 GCCATCCAAAGGAAGCTCATCA 60.947 50.000 0.00 0.00 34.34 3.07
3064 3720 4.175489 ATCCGCGGTCTCGACACG 62.175 66.667 27.15 0.00 39.00 4.49
3082 3738 3.872771 ACACGACCTGTTTACGACAAATT 59.127 39.130 0.00 0.00 37.93 1.82
3153 3809 3.428589 GCAGTGATTCTCAAATTGAGCCC 60.429 47.826 17.58 9.48 43.95 5.19
3158 3814 5.882557 GTGATTCTCAAATTGAGCCCTAGAA 59.117 40.000 17.58 6.81 43.95 2.10
3229 3885 0.968405 TCCTTGGCAATTTCTGGTGC 59.032 50.000 0.00 0.00 40.14 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 8.492748 ACAAACACACTAAAACGTGTCTATATG 58.507 33.333 0.00 0.00 45.74 1.78
114 134 1.603739 GCCTCGGCCAGTCCTTTTT 60.604 57.895 2.24 0.00 34.56 1.94
115 135 2.034221 GCCTCGGCCAGTCCTTTT 59.966 61.111 2.24 0.00 34.56 2.27
116 136 2.754664 CTTGCCTCGGCCAGTCCTTT 62.755 60.000 2.24 0.00 41.09 3.11
117 137 3.249189 TTGCCTCGGCCAGTCCTT 61.249 61.111 2.24 0.00 41.09 3.36
119 139 2.748058 TTTCTTGCCTCGGCCAGTCC 62.748 60.000 2.24 0.00 41.09 3.85
120 140 0.889186 TTTTCTTGCCTCGGCCAGTC 60.889 55.000 2.24 0.00 41.09 3.51
163 184 1.218316 GGGATTTGTCGTCCTCGCT 59.782 57.895 0.00 0.00 36.00 4.93
165 186 4.515404 GGGGATTTGTCGTCCTCG 57.485 61.111 0.00 0.00 36.00 4.63
166 187 1.153429 CCGGGGATTTGTCGTCCTC 60.153 63.158 0.00 0.00 36.00 3.71
167 188 2.987125 CCGGGGATTTGTCGTCCT 59.013 61.111 0.00 0.00 36.00 3.85
169 190 2.822701 GGCCGGGGATTTGTCGTC 60.823 66.667 2.18 0.00 0.00 4.20
170 191 4.419921 GGGCCGGGGATTTGTCGT 62.420 66.667 2.18 0.00 0.00 4.34
172 193 4.055227 TGGGGCCGGGGATTTGTC 62.055 66.667 2.18 0.00 0.00 3.18
173 194 4.060667 CTGGGGCCGGGGATTTGT 62.061 66.667 2.18 0.00 0.00 2.83
174 195 4.839706 CCTGGGGCCGGGGATTTG 62.840 72.222 2.18 0.00 38.78 2.32
193 215 3.090219 GCCTTCCGCGTATCCTGGT 62.090 63.158 4.92 0.00 0.00 4.00
194 216 2.280186 GCCTTCCGCGTATCCTGG 60.280 66.667 4.92 0.00 0.00 4.45
195 217 1.592669 CTGCCTTCCGCGTATCCTG 60.593 63.158 4.92 0.00 42.08 3.86
196 218 1.739338 CTCTGCCTTCCGCGTATCCT 61.739 60.000 4.92 0.00 42.08 3.24
197 219 1.300233 CTCTGCCTTCCGCGTATCC 60.300 63.158 4.92 0.00 42.08 2.59
198 220 0.872021 CACTCTGCCTTCCGCGTATC 60.872 60.000 4.92 0.00 42.08 2.24
199 221 1.141881 CACTCTGCCTTCCGCGTAT 59.858 57.895 4.92 0.00 42.08 3.06
222 244 1.065126 CCTCCCTCCATGAAGTTCCAC 60.065 57.143 0.00 0.00 0.00 4.02
239 261 2.040359 CTTCCCTCCCCTCCCCTC 60.040 72.222 0.00 0.00 0.00 4.30
240 262 4.439901 GCTTCCCTCCCCTCCCCT 62.440 72.222 0.00 0.00 0.00 4.79
241 263 4.439901 AGCTTCCCTCCCCTCCCC 62.440 72.222 0.00 0.00 0.00 4.81
242 264 3.093172 CAGCTTCCCTCCCCTCCC 61.093 72.222 0.00 0.00 0.00 4.30
243 265 3.803162 GCAGCTTCCCTCCCCTCC 61.803 72.222 0.00 0.00 0.00 4.30
244 266 3.011517 TGCAGCTTCCCTCCCCTC 61.012 66.667 0.00 0.00 0.00 4.30
245 267 3.334054 GTGCAGCTTCCCTCCCCT 61.334 66.667 0.00 0.00 0.00 4.79
246 268 4.432741 GGTGCAGCTTCCCTCCCC 62.433 72.222 9.07 0.00 0.00 4.81
247 269 3.334054 AGGTGCAGCTTCCCTCCC 61.334 66.667 13.85 0.00 0.00 4.30
248 270 2.250741 GAGAGGTGCAGCTTCCCTCC 62.251 65.000 21.18 5.87 44.85 4.30
249 271 1.220477 GAGAGGTGCAGCTTCCCTC 59.780 63.158 21.18 17.50 44.22 4.30
250 272 2.654079 CGAGAGGTGCAGCTTCCCT 61.654 63.158 21.18 12.70 0.00 4.20
251 273 2.125350 CGAGAGGTGCAGCTTCCC 60.125 66.667 21.18 7.46 0.00 3.97
252 274 2.817396 GCGAGAGGTGCAGCTTCC 60.817 66.667 21.18 13.46 0.00 3.46
336 381 4.269523 TGGTGCTGGTGCTGGGTC 62.270 66.667 0.00 0.00 40.48 4.46
362 407 2.491022 CCGAGGAAGGTAGGGAGCG 61.491 68.421 0.00 0.00 0.00 5.03
363 408 0.976590 AACCGAGGAAGGTAGGGAGC 60.977 60.000 0.00 0.00 45.21 4.70
1119 1486 3.075005 TGGTAGTCCCGCCAGAGC 61.075 66.667 0.00 0.00 35.15 4.09
1234 1604 9.917129 CCACGGATACAATGTAGTGTATAATAA 57.083 33.333 5.11 0.00 43.25 1.40
1238 1608 5.279106 GGCCACGGATACAATGTAGTGTATA 60.279 44.000 0.00 0.00 43.25 1.47
1272 1645 3.283684 TGACGCCGCCAAACAAGG 61.284 61.111 0.00 0.00 0.00 3.61
1273 1646 2.051345 GTGACGCCGCCAAACAAG 60.051 61.111 0.00 0.00 0.00 3.16
1274 1647 1.729470 ATTGTGACGCCGCCAAACAA 61.729 50.000 2.86 2.86 35.41 2.83
1275 1648 2.123988 GATTGTGACGCCGCCAAACA 62.124 55.000 0.00 0.00 0.00 2.83
1276 1649 1.442017 GATTGTGACGCCGCCAAAC 60.442 57.895 0.00 0.00 0.00 2.93
1277 1650 2.622011 GGATTGTGACGCCGCCAAA 61.622 57.895 0.00 0.00 0.00 3.28
1278 1651 3.053291 GGATTGTGACGCCGCCAA 61.053 61.111 0.00 0.00 0.00 4.52
1333 1716 6.981762 AGTAAATCAGCAATCAGACAGAAG 57.018 37.500 0.00 0.00 0.00 2.85
1461 1845 1.755380 AGGCATTAGTCCGTACTGGTC 59.245 52.381 0.00 0.00 39.52 4.02
1495 1880 1.134901 CCGAGTCCAGTCGAGAACG 59.865 63.158 5.35 0.00 42.85 3.95
1504 1889 1.214062 GTGTCAGCTCCGAGTCCAG 59.786 63.158 0.00 0.00 0.00 3.86
1678 2063 3.882888 TCCAAACTTCCAATGTCAGTGAC 59.117 43.478 16.68 16.68 0.00 3.67
1707 2092 2.589014 CGCAAGAATCTGGCAGAAAAC 58.411 47.619 22.84 14.98 43.02 2.43
1749 2134 3.376546 GTGTTTGCTCTGGATCATCCTTC 59.623 47.826 4.96 0.00 37.46 3.46
1759 2144 1.538512 CCTGTGATGTGTTTGCTCTGG 59.461 52.381 0.00 0.00 0.00 3.86
1794 2179 2.071778 TGGATGGGATTTGCTTAGCC 57.928 50.000 0.29 0.00 0.00 3.93
1836 2221 2.363306 TTGTGTTCTTGCTGGTGGAT 57.637 45.000 0.00 0.00 0.00 3.41
1976 2361 8.053026 AGAGAAATCCAGATTGTCAGAAAATG 57.947 34.615 0.00 0.00 0.00 2.32
2127 2521 6.613699 TGATAAGTTGATATTGGAGGCCATT 58.386 36.000 5.01 0.00 31.53 3.16
2131 2525 7.573968 AAACTGATAAGTTGATATTGGAGGC 57.426 36.000 0.00 0.00 31.64 4.70
2242 2636 4.168101 ACCACCAGAGAAGGATTTCTACA 58.832 43.478 0.00 0.00 43.63 2.74
2377 2787 6.412362 AAGTGTGTCAAACTATCTCAGTCT 57.588 37.500 0.00 0.00 36.04 3.24
2451 2861 4.521146 CATAGGCAAAGAATGGTGACTCT 58.479 43.478 0.00 0.00 34.10 3.24
2459 2869 7.385752 TCAAAAGAAAAGCATAGGCAAAGAATG 59.614 33.333 0.67 0.00 44.61 2.67
2460 2870 7.444299 TCAAAAGAAAAGCATAGGCAAAGAAT 58.556 30.769 0.67 0.00 44.61 2.40
2583 3207 7.620188 GCTCTGCACGTATAAAATGCTATACTG 60.620 40.741 0.00 0.00 40.13 2.74
2586 3210 6.220201 TGCTCTGCACGTATAAAATGCTATA 58.780 36.000 0.00 0.00 40.13 1.31
2587 3211 5.056480 TGCTCTGCACGTATAAAATGCTAT 58.944 37.500 0.00 0.00 40.13 2.97
2598 3222 3.670625 AGGTTTATTTGCTCTGCACGTA 58.329 40.909 0.00 0.00 38.71 3.57
2653 3277 7.465245 GCAGTTTGCTATGTCTTTACTGAGATC 60.465 40.741 0.00 0.00 40.96 2.75
2702 3327 7.500892 TCAATGATTCATGTCATGTGATGATCA 59.499 33.333 12.54 13.81 42.04 2.92
2893 3546 2.159787 GCAGTGCAACATCTGTAGAACG 60.160 50.000 11.09 0.00 41.43 3.95
2898 3551 2.837532 TCTGCAGTGCAACATCTGTA 57.162 45.000 20.22 0.00 41.43 2.74
2901 3554 1.460504 CCATCTGCAGTGCAACATCT 58.539 50.000 20.22 0.00 41.43 2.90
2950 3603 1.628846 GCCTTGGGAGAAAGTGGAGTA 59.371 52.381 0.00 0.00 0.00 2.59
2987 3643 1.101331 GCTTCCTTTGGATGGCTCAG 58.899 55.000 0.00 0.00 31.58 3.35
3006 3662 1.266175 GGCTCGAATGGCAATGATGAG 59.734 52.381 0.00 0.00 0.00 2.90
3012 3668 1.134007 TCAGATGGCTCGAATGGCAAT 60.134 47.619 5.01 0.00 45.43 3.56
3064 3720 3.252458 AGGCAATTTGTCGTAAACAGGTC 59.748 43.478 0.00 0.00 39.58 3.85
3153 3809 3.953612 TGCCAGGCCAAATGTAATTCTAG 59.046 43.478 9.64 0.00 33.67 2.43
3158 3814 2.469952 ACATGCCAGGCCAAATGTAAT 58.530 42.857 13.09 0.00 31.63 1.89
3187 3843 3.571401 CCAAATACCATCCTCAGAATGGC 59.429 47.826 0.00 0.00 38.99 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.