Multiple sequence alignment - TraesCS5B01G221800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G221800 chr5B 100.000 4071 0 0 1 4071 396431200 396435270 0.000000e+00 7518.0
1 TraesCS5B01G221800 chr5A 92.051 1648 92 15 919 2549 438823236 438824861 0.000000e+00 2281.0
2 TraesCS5B01G221800 chr5A 93.254 252 14 3 2647 2896 438842348 438842598 6.430000e-98 368.0
3 TraesCS5B01G221800 chr5A 92.181 243 17 1 2893 3133 438843672 438843914 3.900000e-90 342.0
4 TraesCS5B01G221800 chr5D 90.413 1648 89 20 1492 3133 337681671 337683255 0.000000e+00 2104.0
5 TraesCS5B01G221800 chr5D 97.564 944 22 1 3129 4071 303832976 303832033 0.000000e+00 1615.0
6 TraesCS5B01G221800 chr5D 94.684 602 21 1 823 1424 337681053 337681643 0.000000e+00 924.0
7 TraesCS5B01G221800 chr7D 97.775 944 19 2 3129 4071 163196540 163197482 0.000000e+00 1626.0
8 TraesCS5B01G221800 chr7D 97.246 944 25 1 3129 4071 562126078 562127021 0.000000e+00 1598.0
9 TraesCS5B01G221800 chr1D 97.667 943 20 2 3130 4071 413729662 413730603 0.000000e+00 1618.0
10 TraesCS5B01G221800 chr3D 97.561 943 22 1 3130 4071 607831636 607832578 0.000000e+00 1613.0
11 TraesCS5B01G221800 chr3D 87.368 95 10 1 488 580 380857369 380857275 1.550000e-19 108.0
12 TraesCS5B01G221800 chr6D 97.458 944 23 1 3129 4071 420729687 420728744 0.000000e+00 1609.0
13 TraesCS5B01G221800 chr1B 97.254 947 23 3 3128 4071 667724512 667723566 0.000000e+00 1602.0
14 TraesCS5B01G221800 chr1B 79.063 363 62 6 1447 1798 435365568 435365927 1.890000e-58 237.0
15 TraesCS5B01G221800 chr7B 97.346 942 24 1 3131 4071 448657608 448656667 0.000000e+00 1600.0
16 TraesCS5B01G221800 chr4B 97.240 942 24 2 3131 4071 467912862 467913802 0.000000e+00 1594.0
17 TraesCS5B01G221800 chr2D 87.907 1290 123 11 823 2089 108769791 108771070 0.000000e+00 1487.0
18 TraesCS5B01G221800 chr2D 87.643 437 52 2 2095 2530 108771107 108771542 1.310000e-139 507.0
19 TraesCS5B01G221800 chr2D 82.911 474 43 16 2561 3024 108771621 108772066 3.810000e-105 392.0
20 TraesCS5B01G221800 chr2D 89.130 46 4 1 3089 3134 108772186 108772230 5.680000e-04 56.5
21 TraesCS5B01G221800 chr2A 87.211 1298 130 24 823 2095 104787248 104788534 0.000000e+00 1445.0
22 TraesCS5B01G221800 chr2A 87.859 453 51 4 2097 2547 104788567 104789017 2.790000e-146 529.0
23 TraesCS5B01G221800 chr2A 81.629 528 51 20 2550 3075 104789079 104789562 2.950000e-106 396.0
24 TraesCS5B01G221800 chr2A 79.464 112 18 4 479 587 1656676 1656785 1.570000e-09 75.0
25 TraesCS5B01G221800 chr2A 93.478 46 3 0 3088 3133 104789599 104789644 7.300000e-08 69.4
26 TraesCS5B01G221800 chr2B 86.909 1291 120 24 823 2094 158430924 158432184 0.000000e+00 1402.0
27 TraesCS5B01G221800 chr2B 82.600 1000 108 33 2095 3065 158432216 158433178 0.000000e+00 822.0
28 TraesCS5B01G221800 chr3A 86.022 93 13 0 488 580 504112273 504112181 2.590000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G221800 chr5B 396431200 396435270 4070 False 7518.000 7518 100.00000 1 4071 1 chr5B.!!$F1 4070
1 TraesCS5B01G221800 chr5A 438823236 438824861 1625 False 2281.000 2281 92.05100 919 2549 1 chr5A.!!$F1 1630
2 TraesCS5B01G221800 chr5A 438842348 438843914 1566 False 355.000 368 92.71750 2647 3133 2 chr5A.!!$F2 486
3 TraesCS5B01G221800 chr5D 303832033 303832976 943 True 1615.000 1615 97.56400 3129 4071 1 chr5D.!!$R1 942
4 TraesCS5B01G221800 chr5D 337681053 337683255 2202 False 1514.000 2104 92.54850 823 3133 2 chr5D.!!$F1 2310
5 TraesCS5B01G221800 chr7D 163196540 163197482 942 False 1626.000 1626 97.77500 3129 4071 1 chr7D.!!$F1 942
6 TraesCS5B01G221800 chr7D 562126078 562127021 943 False 1598.000 1598 97.24600 3129 4071 1 chr7D.!!$F2 942
7 TraesCS5B01G221800 chr1D 413729662 413730603 941 False 1618.000 1618 97.66700 3130 4071 1 chr1D.!!$F1 941
8 TraesCS5B01G221800 chr3D 607831636 607832578 942 False 1613.000 1613 97.56100 3130 4071 1 chr3D.!!$F1 941
9 TraesCS5B01G221800 chr6D 420728744 420729687 943 True 1609.000 1609 97.45800 3129 4071 1 chr6D.!!$R1 942
10 TraesCS5B01G221800 chr1B 667723566 667724512 946 True 1602.000 1602 97.25400 3128 4071 1 chr1B.!!$R1 943
11 TraesCS5B01G221800 chr7B 448656667 448657608 941 True 1600.000 1600 97.34600 3131 4071 1 chr7B.!!$R1 940
12 TraesCS5B01G221800 chr4B 467912862 467913802 940 False 1594.000 1594 97.24000 3131 4071 1 chr4B.!!$F1 940
13 TraesCS5B01G221800 chr2D 108769791 108772230 2439 False 610.625 1487 86.89775 823 3134 4 chr2D.!!$F1 2311
14 TraesCS5B01G221800 chr2A 104787248 104789644 2396 False 609.850 1445 87.54425 823 3133 4 chr2A.!!$F2 2310
15 TraesCS5B01G221800 chr2B 158430924 158433178 2254 False 1112.000 1402 84.75450 823 3065 2 chr2B.!!$F1 2242

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.031585 GAACCCGGTTTTTCCTGTGC 59.968 55.0 3.77 0.0 0.00 4.57 F
748 749 0.101399 ATTCGTACTCCAGCTCTGCG 59.899 55.0 0.00 0.0 0.00 5.18 F
752 753 0.243907 GTACTCCAGCTCTGCGTTGA 59.756 55.0 0.00 0.0 0.00 3.18 F
754 755 0.320247 ACTCCAGCTCTGCGTTGAAG 60.320 55.0 0.00 0.0 0.00 3.02 F
1259 1282 0.463116 ACCGCGACCAAGTGAGTTTT 60.463 50.0 8.23 0.0 0.00 2.43 F
1301 1324 1.114627 GGATTGCCCATTTGGAGGTC 58.885 55.0 0.00 0.0 37.39 3.85 F
1825 1876 1.845809 GCACAGACTTTGGTCGGCAG 61.846 60.0 0.00 0.0 46.29 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1175 1198 0.037882 ACCAGCATCAGAGACACGTG 60.038 55.0 15.48 15.48 0.00 4.49 R
1799 1850 0.236711 CCAAAGTCTGTGCTTGAGCG 59.763 55.0 0.00 0.00 45.83 5.03 R
1803 1854 0.588252 CCGACCAAAGTCTGTGCTTG 59.412 55.0 0.00 0.00 41.16 4.01 R
2666 2832 1.032014 AAACCAGTGTCCACATGTGC 58.968 50.0 20.81 8.40 0.00 4.57 R
2971 4230 1.550130 TTCCTGGGCTTCGTAGGGTG 61.550 60.0 0.00 0.00 32.39 4.61 R
2991 4250 2.627515 TGAAGTTGAGCTGAGCTTGT 57.372 45.0 9.00 0.00 39.88 3.16 R
3520 4843 0.461548 CGCTTCACCCTCATGCTCTA 59.538 55.0 0.00 0.00 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.351938 GGCCGCGGTTTTGGGAAC 62.352 66.667 28.70 5.99 0.00 3.62
31 32 2.841317 GGAACCCTGAACCCGGTT 59.159 61.111 1.22 1.22 45.12 4.44
32 33 1.152138 GGAACCCTGAACCCGGTTT 59.848 57.895 3.77 0.00 42.48 3.27
33 34 0.468585 GGAACCCTGAACCCGGTTTT 60.469 55.000 3.77 0.00 42.48 2.43
34 35 1.405872 GAACCCTGAACCCGGTTTTT 58.594 50.000 3.77 0.00 42.48 1.94
35 36 1.338973 GAACCCTGAACCCGGTTTTTC 59.661 52.381 3.77 0.29 42.48 2.29
36 37 0.468585 ACCCTGAACCCGGTTTTTCC 60.469 55.000 3.77 0.00 0.00 3.13
37 38 0.178973 CCCTGAACCCGGTTTTTCCT 60.179 55.000 3.77 0.00 0.00 3.36
38 39 0.958822 CCTGAACCCGGTTTTTCCTG 59.041 55.000 3.77 0.00 0.00 3.86
39 40 1.687563 CTGAACCCGGTTTTTCCTGT 58.312 50.000 3.77 0.00 0.00 4.00
40 41 1.336755 CTGAACCCGGTTTTTCCTGTG 59.663 52.381 3.77 0.00 0.00 3.66
41 42 0.031585 GAACCCGGTTTTTCCTGTGC 59.968 55.000 3.77 0.00 0.00 4.57
42 43 0.396556 AACCCGGTTTTTCCTGTGCT 60.397 50.000 0.00 0.00 0.00 4.40
43 44 0.475044 ACCCGGTTTTTCCTGTGCTA 59.525 50.000 0.00 0.00 0.00 3.49
44 45 1.074889 ACCCGGTTTTTCCTGTGCTAT 59.925 47.619 0.00 0.00 0.00 2.97
45 46 2.167662 CCCGGTTTTTCCTGTGCTATT 58.832 47.619 0.00 0.00 0.00 1.73
46 47 2.560981 CCCGGTTTTTCCTGTGCTATTT 59.439 45.455 0.00 0.00 0.00 1.40
47 48 3.366985 CCCGGTTTTTCCTGTGCTATTTC 60.367 47.826 0.00 0.00 0.00 2.17
48 49 3.366985 CCGGTTTTTCCTGTGCTATTTCC 60.367 47.826 0.00 0.00 0.00 3.13
49 50 3.506067 CGGTTTTTCCTGTGCTATTTCCT 59.494 43.478 0.00 0.00 0.00 3.36
50 51 4.022329 CGGTTTTTCCTGTGCTATTTCCTT 60.022 41.667 0.00 0.00 0.00 3.36
51 52 5.508994 CGGTTTTTCCTGTGCTATTTCCTTT 60.509 40.000 0.00 0.00 0.00 3.11
52 53 5.926542 GGTTTTTCCTGTGCTATTTCCTTTC 59.073 40.000 0.00 0.00 0.00 2.62
53 54 5.371115 TTTTCCTGTGCTATTTCCTTTCG 57.629 39.130 0.00 0.00 0.00 3.46
54 55 3.695830 TCCTGTGCTATTTCCTTTCGT 57.304 42.857 0.00 0.00 0.00 3.85
55 56 3.596214 TCCTGTGCTATTTCCTTTCGTC 58.404 45.455 0.00 0.00 0.00 4.20
56 57 3.260884 TCCTGTGCTATTTCCTTTCGTCT 59.739 43.478 0.00 0.00 0.00 4.18
57 58 4.003648 CCTGTGCTATTTCCTTTCGTCTT 58.996 43.478 0.00 0.00 0.00 3.01
58 59 4.455877 CCTGTGCTATTTCCTTTCGTCTTT 59.544 41.667 0.00 0.00 0.00 2.52
59 60 5.048713 CCTGTGCTATTTCCTTTCGTCTTTT 60.049 40.000 0.00 0.00 0.00 2.27
60 61 6.385649 TGTGCTATTTCCTTTCGTCTTTTT 57.614 33.333 0.00 0.00 0.00 1.94
109 110 8.831715 TTTTTGCTTTTCACTTCTTCTTTTCT 57.168 26.923 0.00 0.00 0.00 2.52
110 111 8.831715 TTTTGCTTTTCACTTCTTCTTTTCTT 57.168 26.923 0.00 0.00 0.00 2.52
111 112 8.831715 TTTGCTTTTCACTTCTTCTTTTCTTT 57.168 26.923 0.00 0.00 0.00 2.52
112 113 8.831715 TTGCTTTTCACTTCTTCTTTTCTTTT 57.168 26.923 0.00 0.00 0.00 2.27
113 114 8.466086 TGCTTTTCACTTCTTCTTTTCTTTTC 57.534 30.769 0.00 0.00 0.00 2.29
114 115 8.306761 TGCTTTTCACTTCTTCTTTTCTTTTCT 58.693 29.630 0.00 0.00 0.00 2.52
115 116 9.144747 GCTTTTCACTTCTTCTTTTCTTTTCTT 57.855 29.630 0.00 0.00 0.00 2.52
197 198 8.293114 TGTTCGCATTTTCTAAAATTTCTTCC 57.707 30.769 0.00 0.00 36.52 3.46
198 199 7.923344 TGTTCGCATTTTCTAAAATTTCTTCCA 59.077 29.630 0.00 0.00 36.52 3.53
199 200 8.760569 GTTCGCATTTTCTAAAATTTCTTCCAA 58.239 29.630 0.00 0.00 36.52 3.53
200 201 9.487790 TTCGCATTTTCTAAAATTTCTTCCAAT 57.512 25.926 0.00 0.00 36.52 3.16
201 202 9.487790 TCGCATTTTCTAAAATTTCTTCCAATT 57.512 25.926 0.00 0.00 36.52 2.32
216 217 7.784633 TCTTCCAATTTTCACAAAATGTTCC 57.215 32.000 0.00 0.00 40.05 3.62
217 218 7.563906 TCTTCCAATTTTCACAAAATGTTCCT 58.436 30.769 0.00 0.00 40.05 3.36
218 219 7.710475 TCTTCCAATTTTCACAAAATGTTCCTC 59.290 33.333 0.00 0.00 40.05 3.71
219 220 7.123355 TCCAATTTTCACAAAATGTTCCTCT 57.877 32.000 0.00 0.00 40.05 3.69
220 221 7.563906 TCCAATTTTCACAAAATGTTCCTCTT 58.436 30.769 0.00 0.00 40.05 2.85
221 222 7.710475 TCCAATTTTCACAAAATGTTCCTCTTC 59.290 33.333 0.00 0.00 40.05 2.87
222 223 7.712205 CCAATTTTCACAAAATGTTCCTCTTCT 59.288 33.333 0.00 0.00 40.05 2.85
223 224 8.758715 CAATTTTCACAAAATGTTCCTCTTCTC 58.241 33.333 0.00 0.00 40.05 2.87
224 225 7.403312 TTTTCACAAAATGTTCCTCTTCTCA 57.597 32.000 0.00 0.00 0.00 3.27
225 226 6.624352 TTCACAAAATGTTCCTCTTCTCAG 57.376 37.500 0.00 0.00 0.00 3.35
226 227 5.684704 TCACAAAATGTTCCTCTTCTCAGT 58.315 37.500 0.00 0.00 0.00 3.41
227 228 6.122277 TCACAAAATGTTCCTCTTCTCAGTT 58.878 36.000 0.00 0.00 0.00 3.16
228 229 6.603201 TCACAAAATGTTCCTCTTCTCAGTTT 59.397 34.615 0.00 0.00 0.00 2.66
229 230 7.122650 TCACAAAATGTTCCTCTTCTCAGTTTT 59.877 33.333 0.00 0.00 0.00 2.43
230 231 7.761249 CACAAAATGTTCCTCTTCTCAGTTTTT 59.239 33.333 0.00 0.00 0.00 1.94
231 232 7.761249 ACAAAATGTTCCTCTTCTCAGTTTTTG 59.239 33.333 0.00 0.00 36.75 2.44
232 233 7.410120 AAATGTTCCTCTTCTCAGTTTTTGT 57.590 32.000 0.00 0.00 0.00 2.83
233 234 7.410120 AATGTTCCTCTTCTCAGTTTTTGTT 57.590 32.000 0.00 0.00 0.00 2.83
234 235 6.436843 TGTTCCTCTTCTCAGTTTTTGTTC 57.563 37.500 0.00 0.00 0.00 3.18
235 236 5.943416 TGTTCCTCTTCTCAGTTTTTGTTCA 59.057 36.000 0.00 0.00 0.00 3.18
236 237 6.094048 TGTTCCTCTTCTCAGTTTTTGTTCAG 59.906 38.462 0.00 0.00 0.00 3.02
237 238 5.989477 TCCTCTTCTCAGTTTTTGTTCAGA 58.011 37.500 0.00 0.00 0.00 3.27
238 239 6.414732 TCCTCTTCTCAGTTTTTGTTCAGAA 58.585 36.000 0.00 0.00 0.00 3.02
239 240 6.884295 TCCTCTTCTCAGTTTTTGTTCAGAAA 59.116 34.615 0.00 0.00 0.00 2.52
240 241 7.557719 TCCTCTTCTCAGTTTTTGTTCAGAAAT 59.442 33.333 0.00 0.00 0.00 2.17
241 242 7.646922 CCTCTTCTCAGTTTTTGTTCAGAAATG 59.353 37.037 0.00 0.00 0.00 2.32
242 243 8.279970 TCTTCTCAGTTTTTGTTCAGAAATGA 57.720 30.769 0.00 0.00 0.00 2.57
243 244 8.739039 TCTTCTCAGTTTTTGTTCAGAAATGAA 58.261 29.630 0.00 0.00 0.00 2.57
244 245 9.357652 CTTCTCAGTTTTTGTTCAGAAATGAAA 57.642 29.630 0.00 0.00 0.00 2.69
245 246 9.703892 TTCTCAGTTTTTGTTCAGAAATGAAAA 57.296 25.926 0.00 0.00 0.00 2.29
246 247 9.703892 TCTCAGTTTTTGTTCAGAAATGAAAAA 57.296 25.926 0.00 5.29 0.00 1.94
289 290 9.450807 AAAGTTCAGATATTCAAAAGTTGTTCG 57.549 29.630 0.00 0.00 0.00 3.95
290 291 7.078228 AGTTCAGATATTCAAAAGTTGTTCGC 58.922 34.615 0.00 0.00 0.00 4.70
291 292 6.801539 TCAGATATTCAAAAGTTGTTCGCT 57.198 33.333 0.00 0.00 0.00 4.93
292 293 7.202016 TCAGATATTCAAAAGTTGTTCGCTT 57.798 32.000 0.00 0.00 0.00 4.68
293 294 8.317891 TCAGATATTCAAAAGTTGTTCGCTTA 57.682 30.769 0.00 0.00 0.00 3.09
294 295 8.946085 TCAGATATTCAAAAGTTGTTCGCTTAT 58.054 29.630 0.00 0.00 0.00 1.73
295 296 9.559958 CAGATATTCAAAAGTTGTTCGCTTATT 57.440 29.630 0.00 0.00 0.00 1.40
394 395 9.657419 AAAATGTTCAAGAATTTCAAAGACTGT 57.343 25.926 0.00 0.00 0.00 3.55
395 396 9.657419 AAATGTTCAAGAATTTCAAAGACTGTT 57.343 25.926 0.00 0.00 0.00 3.16
396 397 8.862550 ATGTTCAAGAATTTCAAAGACTGTTC 57.137 30.769 0.00 0.00 0.00 3.18
397 398 8.055279 TGTTCAAGAATTTCAAAGACTGTTCT 57.945 30.769 0.00 0.00 0.00 3.01
398 399 8.184192 TGTTCAAGAATTTCAAAGACTGTTCTC 58.816 33.333 0.00 0.00 0.00 2.87
399 400 6.948353 TCAAGAATTTCAAAGACTGTTCTCG 58.052 36.000 0.00 0.00 0.00 4.04
400 401 6.538742 TCAAGAATTTCAAAGACTGTTCTCGT 59.461 34.615 0.00 0.00 0.00 4.18
401 402 6.927294 AGAATTTCAAAGACTGTTCTCGTT 57.073 33.333 0.00 0.00 0.00 3.85
402 403 7.321745 AGAATTTCAAAGACTGTTCTCGTTT 57.678 32.000 0.00 0.00 0.00 3.60
403 404 7.410485 AGAATTTCAAAGACTGTTCTCGTTTC 58.590 34.615 0.00 0.00 0.00 2.78
404 405 6.677781 ATTTCAAAGACTGTTCTCGTTTCA 57.322 33.333 0.00 0.00 0.00 2.69
405 406 6.489127 TTTCAAAGACTGTTCTCGTTTCAA 57.511 33.333 0.00 0.00 0.00 2.69
406 407 6.489127 TTCAAAGACTGTTCTCGTTTCAAA 57.511 33.333 0.00 0.00 0.00 2.69
407 408 6.489127 TCAAAGACTGTTCTCGTTTCAAAA 57.511 33.333 0.00 0.00 0.00 2.44
408 409 7.083875 TCAAAGACTGTTCTCGTTTCAAAAT 57.916 32.000 0.00 0.00 0.00 1.82
409 410 7.535139 TCAAAGACTGTTCTCGTTTCAAAATT 58.465 30.769 0.00 0.00 0.00 1.82
410 411 8.026607 TCAAAGACTGTTCTCGTTTCAAAATTT 58.973 29.630 0.00 0.00 0.00 1.82
411 412 8.647226 CAAAGACTGTTCTCGTTTCAAAATTTT 58.353 29.630 0.00 0.00 0.00 1.82
412 413 7.740519 AGACTGTTCTCGTTTCAAAATTTTG 57.259 32.000 22.40 22.40 39.48 2.44
413 414 7.312899 AGACTGTTCTCGTTTCAAAATTTTGT 58.687 30.769 25.98 6.23 39.18 2.83
414 415 7.812669 AGACTGTTCTCGTTTCAAAATTTTGTT 59.187 29.630 25.98 0.00 39.18 2.83
415 416 7.949186 ACTGTTCTCGTTTCAAAATTTTGTTC 58.051 30.769 25.98 17.13 39.18 3.18
416 417 7.596995 ACTGTTCTCGTTTCAAAATTTTGTTCA 59.403 29.630 25.98 11.99 39.18 3.18
417 418 8.472683 TGTTCTCGTTTCAAAATTTTGTTCAT 57.527 26.923 25.98 0.00 39.18 2.57
418 419 9.574458 TGTTCTCGTTTCAAAATTTTGTTCATA 57.426 25.926 25.98 7.82 39.18 2.15
477 478 9.702494 TGTTCACAAATTGATATAATGTTTGCA 57.298 25.926 0.00 0.00 34.12 4.08
510 511 7.659290 AGTTCGTGTTTCTAAAATTTGTTCG 57.341 32.000 0.00 0.00 0.00 3.95
511 512 6.195798 AGTTCGTGTTTCTAAAATTTGTTCGC 59.804 34.615 0.00 0.00 0.00 4.70
512 513 5.570344 TCGTGTTTCTAAAATTTGTTCGCA 58.430 33.333 0.00 0.00 0.00 5.10
513 514 6.028368 TCGTGTTTCTAAAATTTGTTCGCAA 58.972 32.000 0.00 0.00 34.91 4.85
529 530 8.984482 TTGTTCGCAAATTCAAAATATGTTTG 57.016 26.923 0.00 0.00 33.58 2.93
530 531 7.571026 TGTTCGCAAATTCAAAATATGTTTGG 58.429 30.769 9.18 0.00 29.93 3.28
531 532 6.718454 TCGCAAATTCAAAATATGTTTGGG 57.282 33.333 0.00 0.00 38.35 4.12
532 533 5.641209 TCGCAAATTCAAAATATGTTTGGGG 59.359 36.000 11.49 0.00 37.95 4.96
533 534 5.411053 CGCAAATTCAAAATATGTTTGGGGT 59.589 36.000 0.00 0.00 35.80 4.95
534 535 6.591834 CGCAAATTCAAAATATGTTTGGGGTA 59.408 34.615 0.00 0.00 35.80 3.69
535 536 7.279758 CGCAAATTCAAAATATGTTTGGGGTAT 59.720 33.333 0.00 0.00 35.80 2.73
536 537 8.955388 GCAAATTCAAAATATGTTTGGGGTATT 58.045 29.630 9.18 0.00 29.93 1.89
563 564 7.778470 AAAAATGTTTGCATTCTACGGAAAA 57.222 28.000 0.00 0.00 43.89 2.29
564 565 7.778470 AAAATGTTTGCATTCTACGGAAAAA 57.222 28.000 0.00 0.00 43.89 1.94
565 566 7.961325 AAATGTTTGCATTCTACGGAAAAAT 57.039 28.000 0.00 0.00 43.89 1.82
566 567 6.949578 ATGTTTGCATTCTACGGAAAAATG 57.050 33.333 0.00 0.00 34.90 2.32
567 568 5.837437 TGTTTGCATTCTACGGAAAAATGT 58.163 33.333 4.76 0.00 34.90 2.71
568 569 6.276847 TGTTTGCATTCTACGGAAAAATGTT 58.723 32.000 4.76 0.00 34.90 2.71
569 570 6.419413 TGTTTGCATTCTACGGAAAAATGTTC 59.581 34.615 4.76 0.00 34.90 3.18
570 571 4.717991 TGCATTCTACGGAAAAATGTTCG 58.282 39.130 4.76 0.00 34.90 3.95
571 572 4.214545 TGCATTCTACGGAAAAATGTTCGT 59.785 37.500 4.76 0.00 39.30 3.85
572 573 4.786575 GCATTCTACGGAAAAATGTTCGTC 59.213 41.667 4.76 0.00 37.10 4.20
573 574 5.615984 GCATTCTACGGAAAAATGTTCGTCA 60.616 40.000 4.76 0.00 37.10 4.35
574 575 6.542852 CATTCTACGGAAAAATGTTCGTCAT 58.457 36.000 0.00 0.00 37.10 3.06
575 576 7.021196 CATTCTACGGAAAAATGTTCGTCATT 58.979 34.615 0.00 3.58 39.45 2.57
576 577 6.160664 TCTACGGAAAAATGTTCGTCATTC 57.839 37.500 8.45 0.00 44.85 2.67
577 578 4.155310 ACGGAAAAATGTTCGTCATTCC 57.845 40.909 8.45 0.00 44.85 3.01
578 579 3.566322 ACGGAAAAATGTTCGTCATTCCA 59.434 39.130 8.45 0.00 44.85 3.53
579 580 4.217550 ACGGAAAAATGTTCGTCATTCCAT 59.782 37.500 8.45 0.00 44.85 3.41
580 581 5.413213 ACGGAAAAATGTTCGTCATTCCATA 59.587 36.000 8.45 0.00 44.85 2.74
581 582 6.072397 ACGGAAAAATGTTCGTCATTCCATAA 60.072 34.615 8.45 0.00 44.85 1.90
582 583 6.804295 CGGAAAAATGTTCGTCATTCCATAAA 59.196 34.615 8.45 0.00 44.85 1.40
583 584 7.327275 CGGAAAAATGTTCGTCATTCCATAAAA 59.673 33.333 8.45 0.00 44.85 1.52
584 585 9.150348 GGAAAAATGTTCGTCATTCCATAAAAT 57.850 29.630 8.45 0.00 44.85 1.82
585 586 9.956797 GAAAAATGTTCGTCATTCCATAAAATG 57.043 29.630 8.45 0.00 44.85 2.32
586 587 9.487790 AAAAATGTTCGTCATTCCATAAAATGT 57.512 25.926 8.45 0.00 44.85 2.71
587 588 9.487790 AAAATGTTCGTCATTCCATAAAATGTT 57.512 25.926 8.45 0.00 44.85 2.71
588 589 9.487790 AAATGTTCGTCATTCCATAAAATGTTT 57.512 25.926 8.45 0.00 44.85 2.83
589 590 7.865875 TGTTCGTCATTCCATAAAATGTTTG 57.134 32.000 0.00 0.00 37.77 2.93
590 591 6.865726 TGTTCGTCATTCCATAAAATGTTTGG 59.134 34.615 0.00 0.00 37.77 3.28
591 592 5.960113 TCGTCATTCCATAAAATGTTTGGG 58.040 37.500 0.00 0.00 37.77 4.12
592 593 5.105554 TCGTCATTCCATAAAATGTTTGGGG 60.106 40.000 0.00 0.00 37.77 4.96
593 594 5.337169 CGTCATTCCATAAAATGTTTGGGGT 60.337 40.000 0.00 0.00 37.77 4.95
594 595 6.127591 CGTCATTCCATAAAATGTTTGGGGTA 60.128 38.462 0.00 0.00 37.77 3.69
595 596 7.039270 GTCATTCCATAAAATGTTTGGGGTAC 58.961 38.462 0.00 0.00 37.77 3.34
596 597 6.726299 TCATTCCATAAAATGTTTGGGGTACA 59.274 34.615 0.00 0.00 37.77 2.90
597 598 6.597832 TTCCATAAAATGTTTGGGGTACAG 57.402 37.500 0.00 0.00 0.00 2.74
598 599 4.464597 TCCATAAAATGTTTGGGGTACAGC 59.535 41.667 0.00 0.00 0.00 4.40
599 600 4.221703 CCATAAAATGTTTGGGGTACAGCA 59.778 41.667 0.00 0.00 0.00 4.41
600 601 5.279708 CCATAAAATGTTTGGGGTACAGCAA 60.280 40.000 0.00 0.00 0.00 3.91
601 602 4.762289 AAAATGTTTGGGGTACAGCAAA 57.238 36.364 0.00 0.00 0.00 3.68
602 603 3.744238 AATGTTTGGGGTACAGCAAAC 57.256 42.857 0.00 0.00 37.85 2.93
603 604 2.145397 TGTTTGGGGTACAGCAAACA 57.855 45.000 0.00 0.00 42.79 2.83
604 605 2.457598 TGTTTGGGGTACAGCAAACAA 58.542 42.857 0.05 0.00 42.30 2.83
605 606 2.166664 TGTTTGGGGTACAGCAAACAAC 59.833 45.455 0.05 0.00 42.30 3.32
606 607 2.429250 GTTTGGGGTACAGCAAACAACT 59.571 45.455 0.00 0.00 37.45 3.16
607 608 3.579534 TTGGGGTACAGCAAACAACTA 57.420 42.857 0.00 0.00 0.00 2.24
608 609 2.853705 TGGGGTACAGCAAACAACTAC 58.146 47.619 0.00 0.00 0.00 2.73
609 610 2.172930 TGGGGTACAGCAAACAACTACA 59.827 45.455 0.00 0.00 0.00 2.74
610 611 2.812011 GGGGTACAGCAAACAACTACAG 59.188 50.000 0.00 0.00 0.00 2.74
611 612 3.473625 GGGTACAGCAAACAACTACAGT 58.526 45.455 0.00 0.00 0.00 3.55
612 613 3.250040 GGGTACAGCAAACAACTACAGTG 59.750 47.826 0.00 0.00 0.00 3.66
613 614 4.124238 GGTACAGCAAACAACTACAGTGA 58.876 43.478 0.00 0.00 0.00 3.41
614 615 4.573201 GGTACAGCAAACAACTACAGTGAA 59.427 41.667 0.00 0.00 0.00 3.18
615 616 5.238650 GGTACAGCAAACAACTACAGTGAAT 59.761 40.000 0.00 0.00 0.00 2.57
616 617 6.425721 GGTACAGCAAACAACTACAGTGAATA 59.574 38.462 0.00 0.00 0.00 1.75
617 618 7.119262 GGTACAGCAAACAACTACAGTGAATAT 59.881 37.037 0.00 0.00 0.00 1.28
618 619 6.902341 ACAGCAAACAACTACAGTGAATATG 58.098 36.000 0.00 0.00 0.00 1.78
619 620 5.796935 CAGCAAACAACTACAGTGAATATGC 59.203 40.000 0.00 0.00 0.00 3.14
620 621 5.095490 GCAAACAACTACAGTGAATATGCC 58.905 41.667 0.00 0.00 0.00 4.40
621 622 5.323900 CAAACAACTACAGTGAATATGCCG 58.676 41.667 0.00 0.00 0.00 5.69
622 623 4.202245 ACAACTACAGTGAATATGCCGT 57.798 40.909 0.00 0.00 0.00 5.68
623 624 4.575885 ACAACTACAGTGAATATGCCGTT 58.424 39.130 0.00 0.00 0.00 4.44
624 625 5.726397 ACAACTACAGTGAATATGCCGTTA 58.274 37.500 0.00 0.00 0.00 3.18
625 626 5.579511 ACAACTACAGTGAATATGCCGTTAC 59.420 40.000 0.00 0.00 0.00 2.50
626 627 5.333299 ACTACAGTGAATATGCCGTTACA 57.667 39.130 0.00 0.00 0.00 2.41
627 628 5.107133 ACTACAGTGAATATGCCGTTACAC 58.893 41.667 0.00 0.00 0.00 2.90
628 629 4.202245 ACAGTGAATATGCCGTTACACT 57.798 40.909 0.00 0.00 38.79 3.55
629 630 4.181578 ACAGTGAATATGCCGTTACACTC 58.818 43.478 0.00 0.00 36.64 3.51
630 631 4.180817 CAGTGAATATGCCGTTACACTCA 58.819 43.478 0.00 0.00 36.64 3.41
631 632 4.032900 CAGTGAATATGCCGTTACACTCAC 59.967 45.833 0.00 0.00 36.64 3.51
632 633 4.081642 AGTGAATATGCCGTTACACTCACT 60.082 41.667 0.00 0.00 34.21 3.41
633 634 4.630069 GTGAATATGCCGTTACACTCACTT 59.370 41.667 0.00 0.00 0.00 3.16
634 635 4.868171 TGAATATGCCGTTACACTCACTTC 59.132 41.667 0.00 0.00 0.00 3.01
635 636 4.737855 ATATGCCGTTACACTCACTTCT 57.262 40.909 0.00 0.00 0.00 2.85
636 637 2.902705 TGCCGTTACACTCACTTCTT 57.097 45.000 0.00 0.00 0.00 2.52
637 638 4.530710 ATGCCGTTACACTCACTTCTTA 57.469 40.909 0.00 0.00 0.00 2.10
638 639 4.325028 TGCCGTTACACTCACTTCTTAA 57.675 40.909 0.00 0.00 0.00 1.85
639 640 4.695396 TGCCGTTACACTCACTTCTTAAA 58.305 39.130 0.00 0.00 0.00 1.52
640 641 5.117584 TGCCGTTACACTCACTTCTTAAAA 58.882 37.500 0.00 0.00 0.00 1.52
641 642 5.006941 TGCCGTTACACTCACTTCTTAAAAC 59.993 40.000 0.00 0.00 0.00 2.43
642 643 5.663292 CCGTTACACTCACTTCTTAAAACG 58.337 41.667 0.00 0.00 37.51 3.60
643 644 5.232838 CCGTTACACTCACTTCTTAAAACGT 59.767 40.000 0.00 0.00 36.40 3.99
644 645 6.237915 CCGTTACACTCACTTCTTAAAACGTT 60.238 38.462 0.00 0.00 36.40 3.99
645 646 7.175410 CGTTACACTCACTTCTTAAAACGTTT 58.825 34.615 7.96 7.96 34.22 3.60
646 647 7.161418 CGTTACACTCACTTCTTAAAACGTTTG 59.839 37.037 15.46 2.12 34.22 2.93
647 648 6.490566 ACACTCACTTCTTAAAACGTTTGT 57.509 33.333 15.46 3.85 0.00 2.83
648 649 6.311723 ACACTCACTTCTTAAAACGTTTGTG 58.688 36.000 15.46 16.13 0.00 3.33
649 650 5.737290 CACTCACTTCTTAAAACGTTTGTGG 59.263 40.000 15.46 12.33 0.00 4.17
650 651 5.413523 ACTCACTTCTTAAAACGTTTGTGGT 59.586 36.000 15.46 12.87 0.00 4.16
651 652 5.632959 TCACTTCTTAAAACGTTTGTGGTG 58.367 37.500 15.46 16.04 0.00 4.17
652 653 4.264380 CACTTCTTAAAACGTTTGTGGTGC 59.736 41.667 15.46 0.00 0.00 5.01
653 654 3.423996 TCTTAAAACGTTTGTGGTGCC 57.576 42.857 15.46 0.00 0.00 5.01
654 655 2.113289 CTTAAAACGTTTGTGGTGCCG 58.887 47.619 15.46 0.00 0.00 5.69
655 656 1.093159 TAAAACGTTTGTGGTGCCGT 58.907 45.000 15.46 0.00 34.56 5.68
656 657 0.244178 AAAACGTTTGTGGTGCCGTT 59.756 45.000 15.46 0.00 44.54 4.44
657 658 0.244178 AAACGTTTGTGGTGCCGTTT 59.756 45.000 13.81 3.47 45.48 3.60
658 659 0.456995 AACGTTTGTGGTGCCGTTTG 60.457 50.000 0.00 0.00 40.27 2.93
659 660 1.306642 ACGTTTGTGGTGCCGTTTGA 61.307 50.000 0.00 0.00 0.00 2.69
660 661 0.179161 CGTTTGTGGTGCCGTTTGAA 60.179 50.000 0.00 0.00 0.00 2.69
661 662 1.732732 CGTTTGTGGTGCCGTTTGAAA 60.733 47.619 0.00 0.00 0.00 2.69
662 663 1.656594 GTTTGTGGTGCCGTTTGAAAC 59.343 47.619 0.00 0.00 0.00 2.78
663 664 1.178276 TTGTGGTGCCGTTTGAAACT 58.822 45.000 6.49 0.00 0.00 2.66
664 665 2.039818 TGTGGTGCCGTTTGAAACTA 57.960 45.000 6.49 0.00 0.00 2.24
665 666 1.944024 TGTGGTGCCGTTTGAAACTAG 59.056 47.619 6.49 0.00 0.00 2.57
666 667 1.944709 GTGGTGCCGTTTGAAACTAGT 59.055 47.619 6.49 0.00 0.00 2.57
667 668 3.132925 GTGGTGCCGTTTGAAACTAGTA 58.867 45.455 6.49 0.00 0.00 1.82
668 669 3.749609 GTGGTGCCGTTTGAAACTAGTAT 59.250 43.478 6.49 0.00 0.00 2.12
669 670 4.931002 GTGGTGCCGTTTGAAACTAGTATA 59.069 41.667 6.49 0.00 0.00 1.47
670 671 4.931002 TGGTGCCGTTTGAAACTAGTATAC 59.069 41.667 6.49 0.00 0.00 1.47
671 672 4.330894 GGTGCCGTTTGAAACTAGTATACC 59.669 45.833 6.49 2.99 0.00 2.73
672 673 5.173664 GTGCCGTTTGAAACTAGTATACCT 58.826 41.667 6.49 0.00 0.00 3.08
673 674 5.063060 GTGCCGTTTGAAACTAGTATACCTG 59.937 44.000 6.49 0.00 0.00 4.00
674 675 5.173664 GCCGTTTGAAACTAGTATACCTGT 58.826 41.667 6.49 0.00 0.00 4.00
675 676 5.640783 GCCGTTTGAAACTAGTATACCTGTT 59.359 40.000 6.49 2.42 0.00 3.16
676 677 6.813152 GCCGTTTGAAACTAGTATACCTGTTA 59.187 38.462 6.49 0.00 0.00 2.41
677 678 7.009907 GCCGTTTGAAACTAGTATACCTGTTAG 59.990 40.741 6.49 4.09 0.00 2.34
678 679 7.009907 CCGTTTGAAACTAGTATACCTGTTAGC 59.990 40.741 6.49 7.51 0.00 3.09
679 680 7.758528 CGTTTGAAACTAGTATACCTGTTAGCT 59.241 37.037 6.49 0.00 0.00 3.32
680 681 8.870879 GTTTGAAACTAGTATACCTGTTAGCTG 58.129 37.037 0.00 0.00 0.00 4.24
681 682 7.713734 TGAAACTAGTATACCTGTTAGCTGT 57.286 36.000 10.30 0.00 0.00 4.40
682 683 8.812513 TGAAACTAGTATACCTGTTAGCTGTA 57.187 34.615 10.30 0.00 0.00 2.74
683 684 8.900781 TGAAACTAGTATACCTGTTAGCTGTAG 58.099 37.037 10.30 0.00 0.00 2.74
684 685 8.820153 AAACTAGTATACCTGTTAGCTGTAGT 57.180 34.615 10.30 1.35 0.00 2.73
685 686 7.804843 ACTAGTATACCTGTTAGCTGTAGTG 57.195 40.000 0.00 0.00 0.00 2.74
686 687 6.771749 ACTAGTATACCTGTTAGCTGTAGTGG 59.228 42.308 0.00 0.00 0.00 4.00
687 688 3.821421 ATACCTGTTAGCTGTAGTGGC 57.179 47.619 0.00 0.00 0.00 5.01
688 689 1.645710 ACCTGTTAGCTGTAGTGGCT 58.354 50.000 0.00 0.00 43.02 4.75
689 690 2.816411 ACCTGTTAGCTGTAGTGGCTA 58.184 47.619 0.00 0.00 40.74 3.93
690 691 2.761208 ACCTGTTAGCTGTAGTGGCTAG 59.239 50.000 0.00 0.00 42.22 3.42
691 692 2.482142 CCTGTTAGCTGTAGTGGCTAGC 60.482 54.545 6.04 6.04 42.22 3.42
692 693 2.166459 CTGTTAGCTGTAGTGGCTAGCA 59.834 50.000 18.24 10.68 45.94 3.49
693 694 2.166459 TGTTAGCTGTAGTGGCTAGCAG 59.834 50.000 18.24 5.02 44.30 4.24
694 695 4.116878 GCTGTAGTGGCTAGCAGC 57.883 61.111 18.24 11.88 45.70 5.25
695 696 1.880340 GCTGTAGTGGCTAGCAGCG 60.880 63.158 18.24 0.00 43.62 5.18
696 697 1.880340 CTGTAGTGGCTAGCAGCGC 60.880 63.158 18.24 0.00 43.62 5.92
697 698 2.290122 CTGTAGTGGCTAGCAGCGCT 62.290 60.000 18.24 2.64 43.62 5.92
698 699 1.590259 GTAGTGGCTAGCAGCGCTC 60.590 63.158 18.24 2.24 43.62 5.03
699 700 3.126074 TAGTGGCTAGCAGCGCTCG 62.126 63.158 18.24 4.46 43.62 5.03
700 701 4.803426 GTGGCTAGCAGCGCTCGT 62.803 66.667 18.24 0.00 43.62 4.18
701 702 4.498520 TGGCTAGCAGCGCTCGTC 62.499 66.667 18.24 0.00 43.62 4.20
702 703 4.498520 GGCTAGCAGCGCTCGTCA 62.499 66.667 18.24 0.00 43.62 4.35
703 704 2.507102 GCTAGCAGCGCTCGTCAA 60.507 61.111 7.13 0.00 40.44 3.18
704 705 2.793322 GCTAGCAGCGCTCGTCAAC 61.793 63.158 7.13 0.00 40.44 3.18
705 706 1.444383 CTAGCAGCGCTCGTCAACA 60.444 57.895 7.13 0.00 40.44 3.33
706 707 1.006688 TAGCAGCGCTCGTCAACAA 60.007 52.632 7.13 0.00 40.44 2.83
707 708 1.282248 TAGCAGCGCTCGTCAACAAC 61.282 55.000 7.13 0.00 40.44 3.32
708 709 2.598632 GCAGCGCTCGTCAACAACT 61.599 57.895 7.13 0.00 0.00 3.16
709 710 1.282248 GCAGCGCTCGTCAACAACTA 61.282 55.000 7.13 0.00 0.00 2.24
710 711 1.350193 CAGCGCTCGTCAACAACTAT 58.650 50.000 7.13 0.00 0.00 2.12
711 712 1.726791 CAGCGCTCGTCAACAACTATT 59.273 47.619 7.13 0.00 0.00 1.73
712 713 2.157668 CAGCGCTCGTCAACAACTATTT 59.842 45.455 7.13 0.00 0.00 1.40
713 714 2.157668 AGCGCTCGTCAACAACTATTTG 59.842 45.455 2.64 0.00 38.83 2.32
714 715 2.724839 GCGCTCGTCAACAACTATTTGG 60.725 50.000 0.00 0.00 37.00 3.28
715 716 2.159707 CGCTCGTCAACAACTATTTGGG 60.160 50.000 0.00 0.00 37.00 4.12
716 717 3.071479 GCTCGTCAACAACTATTTGGGA 58.929 45.455 0.00 0.00 37.00 4.37
717 718 3.125316 GCTCGTCAACAACTATTTGGGAG 59.875 47.826 0.00 0.00 37.00 4.30
718 719 4.315803 CTCGTCAACAACTATTTGGGAGT 58.684 43.478 0.00 0.00 37.00 3.85
719 720 4.312443 TCGTCAACAACTATTTGGGAGTC 58.688 43.478 0.00 0.00 37.00 3.36
720 721 4.062293 CGTCAACAACTATTTGGGAGTCA 58.938 43.478 0.00 0.00 37.00 3.41
721 722 4.084013 CGTCAACAACTATTTGGGAGTCAC 60.084 45.833 0.00 0.00 37.00 3.67
722 723 4.062293 TCAACAACTATTTGGGAGTCACG 58.938 43.478 0.00 0.00 37.00 4.35
723 724 4.062293 CAACAACTATTTGGGAGTCACGA 58.938 43.478 0.00 0.00 37.00 4.35
724 725 3.926616 ACAACTATTTGGGAGTCACGAG 58.073 45.455 0.00 0.00 37.00 4.18
725 726 3.323979 ACAACTATTTGGGAGTCACGAGT 59.676 43.478 0.00 0.00 37.00 4.18
726 727 4.202326 ACAACTATTTGGGAGTCACGAGTT 60.202 41.667 0.00 0.00 37.00 3.01
727 728 4.189639 ACTATTTGGGAGTCACGAGTTC 57.810 45.455 0.00 0.00 0.00 3.01
728 729 2.080286 ATTTGGGAGTCACGAGTTCG 57.920 50.000 0.00 0.00 46.33 3.95
729 730 1.034356 TTTGGGAGTCACGAGTTCGA 58.966 50.000 8.72 0.00 43.02 3.71
730 731 1.254026 TTGGGAGTCACGAGTTCGAT 58.746 50.000 8.72 0.00 43.02 3.59
731 732 1.254026 TGGGAGTCACGAGTTCGATT 58.746 50.000 8.72 0.00 43.02 3.34
732 733 1.201647 TGGGAGTCACGAGTTCGATTC 59.798 52.381 8.72 0.66 43.02 2.52
733 734 1.536149 GGAGTCACGAGTTCGATTCG 58.464 55.000 15.64 15.64 43.02 3.34
740 741 2.819422 CGAGTTCGATTCGTACTCCA 57.181 50.000 28.64 0.21 46.27 3.86
741 742 2.706273 CGAGTTCGATTCGTACTCCAG 58.294 52.381 28.64 17.83 46.27 3.86
742 743 2.452105 GAGTTCGATTCGTACTCCAGC 58.548 52.381 26.21 9.60 44.39 4.85
743 744 2.093106 AGTTCGATTCGTACTCCAGCT 58.907 47.619 11.93 0.00 32.46 4.24
744 745 2.097791 AGTTCGATTCGTACTCCAGCTC 59.902 50.000 11.93 0.00 32.46 4.09
745 746 2.039818 TCGATTCGTACTCCAGCTCT 57.960 50.000 5.89 0.00 0.00 4.09
746 747 1.671328 TCGATTCGTACTCCAGCTCTG 59.329 52.381 5.89 0.00 0.00 3.35
747 748 1.846541 GATTCGTACTCCAGCTCTGC 58.153 55.000 0.00 0.00 0.00 4.26
748 749 0.101399 ATTCGTACTCCAGCTCTGCG 59.899 55.000 0.00 0.00 0.00 5.18
749 750 1.241990 TTCGTACTCCAGCTCTGCGT 61.242 55.000 0.00 0.00 0.00 5.24
750 751 1.213013 CGTACTCCAGCTCTGCGTT 59.787 57.895 0.00 0.00 0.00 4.84
751 752 1.073216 CGTACTCCAGCTCTGCGTTG 61.073 60.000 0.00 0.00 0.00 4.10
752 753 0.243907 GTACTCCAGCTCTGCGTTGA 59.756 55.000 0.00 0.00 0.00 3.18
753 754 0.966179 TACTCCAGCTCTGCGTTGAA 59.034 50.000 0.00 0.00 0.00 2.69
754 755 0.320247 ACTCCAGCTCTGCGTTGAAG 60.320 55.000 0.00 0.00 0.00 3.02
755 756 0.320247 CTCCAGCTCTGCGTTGAAGT 60.320 55.000 0.00 0.00 0.00 3.01
756 757 0.601046 TCCAGCTCTGCGTTGAAGTG 60.601 55.000 0.00 0.00 0.00 3.16
757 758 1.572085 CCAGCTCTGCGTTGAAGTGG 61.572 60.000 0.00 0.00 0.00 4.00
758 759 1.302033 AGCTCTGCGTTGAAGTGGG 60.302 57.895 0.00 0.00 0.00 4.61
759 760 2.970974 GCTCTGCGTTGAAGTGGGC 61.971 63.158 0.00 0.00 0.00 5.36
760 761 1.302033 CTCTGCGTTGAAGTGGGCT 60.302 57.895 0.00 0.00 0.00 5.19
761 762 1.572085 CTCTGCGTTGAAGTGGGCTG 61.572 60.000 0.00 0.00 0.00 4.85
762 763 2.594303 TGCGTTGAAGTGGGCTGG 60.594 61.111 0.00 0.00 0.00 4.85
763 764 4.043200 GCGTTGAAGTGGGCTGGC 62.043 66.667 0.00 0.00 0.00 4.85
764 765 3.365265 CGTTGAAGTGGGCTGGCC 61.365 66.667 14.23 14.23 0.00 5.36
801 802 2.582226 CGTCAGCGCGCTATTGGA 60.582 61.111 36.02 24.09 0.00 3.53
802 803 2.860628 CGTCAGCGCGCTATTGGAC 61.861 63.158 36.02 31.87 0.00 4.02
803 804 2.582226 TCAGCGCGCTATTGGACG 60.582 61.111 36.02 19.89 0.00 4.79
810 811 3.313750 GCTATTGGACGCAGCGAG 58.686 61.111 24.65 8.31 0.00 5.03
811 812 2.875786 GCTATTGGACGCAGCGAGC 61.876 63.158 24.65 15.22 40.87 5.03
820 821 3.006706 GCAGCGAGCGTCCAATAC 58.993 61.111 0.00 0.00 0.00 1.89
821 822 2.526120 GCAGCGAGCGTCCAATACC 61.526 63.158 0.00 0.00 0.00 2.73
824 825 2.493030 CGAGCGTCCAATACCCGT 59.507 61.111 0.00 0.00 0.00 5.28
827 828 0.527817 GAGCGTCCAATACCCGTGAG 60.528 60.000 0.00 0.00 0.00 3.51
833 834 3.800506 CGTCCAATACCCGTGAGAAATAC 59.199 47.826 0.00 0.00 0.00 1.89
886 887 2.799917 CGCCAAAACAATCCGAAAACCA 60.800 45.455 0.00 0.00 0.00 3.67
938 940 3.660732 GAAACCGTCTCCGCCTCCC 62.661 68.421 0.00 0.00 0.00 4.30
1175 1198 1.216710 CCCTCGACCTCTCTGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
1240 1263 1.617357 CCATCATCTGCCTCGAGATCA 59.383 52.381 15.71 10.46 29.72 2.92
1259 1282 0.463116 ACCGCGACCAAGTGAGTTTT 60.463 50.000 8.23 0.00 0.00 2.43
1301 1324 1.114627 GGATTGCCCATTTGGAGGTC 58.885 55.000 0.00 0.00 37.39 3.85
1439 1463 2.078849 ACATCAGATCGTTCAACGCA 57.921 45.000 4.63 0.00 42.21 5.24
1530 1564 2.699954 TGAATGGAGCGGTTTCTTCTC 58.300 47.619 0.00 0.00 0.00 2.87
1648 1686 3.201266 TCCCTTTGGTAGTTCTGTTGTGT 59.799 43.478 0.00 0.00 0.00 3.72
1683 1721 2.290008 TGCCGTTGATGTCTGGTTATGT 60.290 45.455 0.00 0.00 0.00 2.29
1716 1755 3.916761 GATGCAAAGTTTTGGATGCTCA 58.083 40.909 14.98 0.63 46.99 4.26
1721 1760 2.712057 AGTTTTGGATGCTCAAAGCG 57.288 45.000 0.00 0.00 46.26 4.68
1799 1850 2.203126 CATTGCCTCCTCCTCGGC 60.203 66.667 0.00 0.00 46.46 5.54
1805 1856 3.452786 CTCCTCCTCGGCGCTCAA 61.453 66.667 7.64 0.00 0.00 3.02
1806 1857 3.423162 CTCCTCCTCGGCGCTCAAG 62.423 68.421 7.64 1.99 0.00 3.02
1808 1859 4.441695 CTCCTCGGCGCTCAAGCA 62.442 66.667 7.64 0.00 42.21 3.91
1809 1860 4.742201 TCCTCGGCGCTCAAGCAC 62.742 66.667 7.64 0.00 42.21 4.40
1824 1875 1.891919 GCACAGACTTTGGTCGGCA 60.892 57.895 0.00 0.00 46.29 5.69
1825 1876 1.845809 GCACAGACTTTGGTCGGCAG 61.846 60.000 0.00 0.00 46.29 4.85
1887 1952 4.697352 GCATAAGGTGACAACAGAATCAGT 59.303 41.667 0.00 0.00 0.00 3.41
1940 2010 7.044052 GGAAGCGTATAAATGATTTGTTGCTTC 60.044 37.037 26.85 26.85 42.81 3.86
2112 2213 9.502091 TCTTATATACATGTTTAGATTGGTGCC 57.498 33.333 2.30 0.00 0.00 5.01
2138 2239 7.113404 CGTTTCATTATCCTGTTTTGACTGTTG 59.887 37.037 0.00 0.00 0.00 3.33
2168 2269 2.162408 GGCTGCAGGTTTTGACATCTAC 59.838 50.000 17.12 0.00 0.00 2.59
2176 2277 3.306502 GGTTTTGACATCTACGGGAGACA 60.307 47.826 0.00 0.00 36.87 3.41
2214 2315 3.189606 TGGGATAGCCAAGGAGAAGAAA 58.810 45.455 0.00 0.00 35.15 2.52
2217 2318 4.447290 GGATAGCCAAGGAGAAGAAAGAC 58.553 47.826 0.00 0.00 0.00 3.01
2242 2343 5.951747 CCAACCTCCATCAAAGGAAATAGAA 59.048 40.000 0.00 0.00 37.20 2.10
2268 2369 2.604914 CCACACATGCTCTAACATCGAC 59.395 50.000 0.00 0.00 0.00 4.20
2293 2394 8.663025 ACGCAATCATTCTTCATACATGATATC 58.337 33.333 0.00 0.00 36.77 1.63
2535 2637 8.373048 TGTGAAATTCATGACGTAAAACTACT 57.627 30.769 0.00 0.00 0.00 2.57
2556 2717 8.594550 ACTACTAGTGTTTGGTAACTGATCAAT 58.405 33.333 5.39 0.00 35.24 2.57
2634 2798 8.824159 ACATAGACTTGCAGCTAGTAATATTG 57.176 34.615 9.67 6.45 0.00 1.90
2635 2799 8.424918 ACATAGACTTGCAGCTAGTAATATTGT 58.575 33.333 9.67 7.00 0.00 2.71
2636 2800 9.265901 CATAGACTTGCAGCTAGTAATATTGTT 57.734 33.333 9.67 0.00 0.00 2.83
2637 2801 9.838339 ATAGACTTGCAGCTAGTAATATTGTTT 57.162 29.630 9.67 0.00 0.00 2.83
2638 2802 8.567285 AGACTTGCAGCTAGTAATATTGTTTT 57.433 30.769 9.67 0.00 0.00 2.43
2639 2803 9.014297 AGACTTGCAGCTAGTAATATTGTTTTT 57.986 29.630 9.67 0.00 0.00 1.94
2666 2832 2.284417 GGTTATAGCTTCTCGTTTGCCG 59.716 50.000 0.00 0.00 38.13 5.69
2839 3016 4.636249 ACAATCAGTGGAAGTCTTCAGTC 58.364 43.478 14.49 4.26 0.00 3.51
2896 4155 3.054878 CAGGAACACTTTGCAATTGCTC 58.945 45.455 29.37 16.87 42.66 4.26
2971 4230 3.753797 CCTCTCTGGCTGGTTTTTCTTAC 59.246 47.826 0.00 0.00 0.00 2.34
2991 4250 0.838987 ACCCTACGAAGCCCAGGAAA 60.839 55.000 0.00 0.00 0.00 3.13
3118 4441 2.360475 GGGCACTTCTGGCTCCAC 60.360 66.667 0.00 0.00 42.72 4.02
3160 4483 1.327303 ACGGAGGCAAAAGATTTGCA 58.673 45.000 24.22 0.00 46.58 4.08
3274 4597 2.414658 TTTCGCCCCGGCTTTAACCT 62.415 55.000 3.84 0.00 39.32 3.50
3313 4636 5.082059 CGATCACATTGTTTAGCAAGACAC 58.918 41.667 0.00 0.00 40.86 3.67
3482 4805 3.353836 GTGCCATGCGGACGTGTT 61.354 61.111 0.00 0.00 0.00 3.32
3520 4843 4.019501 AGAGCTTCTGAATCACCATGTTCT 60.020 41.667 0.00 0.00 0.00 3.01
3526 4849 4.467438 TCTGAATCACCATGTTCTAGAGCA 59.533 41.667 11.99 11.99 0.00 4.26
3634 4957 1.406898 CTCGCCTCTGCAATCTGTCTA 59.593 52.381 0.00 0.00 37.32 2.59
3845 5169 1.484444 GGTGGACCTCTTGGAGCAGT 61.484 60.000 0.00 0.00 37.04 4.40
3847 5171 1.376553 GGACCTCTTGGAGCAGTGC 60.377 63.158 7.13 7.13 37.04 4.40
3918 5242 3.091545 GGCCTGATTTTGAGAATCCACA 58.908 45.455 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.351938 GTTCCCAAAACCGCGGCC 62.352 66.667 28.58 0.00 0.00 6.13
2 3 4.351938 GGTTCCCAAAACCGCGGC 62.352 66.667 28.58 4.84 0.00 6.53
3 4 3.676605 GGGTTCCCAAAACCGCGG 61.677 66.667 26.86 26.86 41.18 6.46
7 8 1.045407 GGTTCAGGGTTCCCAAAACC 58.955 55.000 20.62 20.62 43.18 3.27
8 9 1.045407 GGGTTCAGGGTTCCCAAAAC 58.955 55.000 10.73 12.38 40.79 2.43
9 10 0.468400 CGGGTTCAGGGTTCCCAAAA 60.468 55.000 10.73 1.11 41.12 2.44
10 11 1.151908 CGGGTTCAGGGTTCCCAAA 59.848 57.895 10.73 1.46 41.12 3.28
11 12 2.836187 CCGGGTTCAGGGTTCCCAA 61.836 63.158 10.73 0.00 41.12 4.12
12 13 3.253838 CCGGGTTCAGGGTTCCCA 61.254 66.667 10.73 0.00 41.12 4.37
13 14 2.361865 AAACCGGGTTCAGGGTTCCC 62.362 60.000 13.78 0.00 45.48 3.97
14 15 0.468585 AAAACCGGGTTCAGGGTTCC 60.469 55.000 13.78 0.00 45.48 3.62
15 16 1.338973 GAAAAACCGGGTTCAGGGTTC 59.661 52.381 13.78 0.59 45.48 3.62
17 18 0.468585 GGAAAAACCGGGTTCAGGGT 60.469 55.000 13.78 0.00 38.44 4.34
18 19 0.178973 AGGAAAAACCGGGTTCAGGG 60.179 55.000 13.78 0.00 44.74 4.45
19 20 0.958822 CAGGAAAAACCGGGTTCAGG 59.041 55.000 13.78 0.00 44.74 3.86
20 21 1.336755 CACAGGAAAAACCGGGTTCAG 59.663 52.381 13.78 5.20 44.74 3.02
21 22 1.394618 CACAGGAAAAACCGGGTTCA 58.605 50.000 13.78 0.00 44.74 3.18
22 23 0.031585 GCACAGGAAAAACCGGGTTC 59.968 55.000 13.78 5.66 44.74 3.62
23 24 0.396556 AGCACAGGAAAAACCGGGTT 60.397 50.000 6.59 6.59 44.74 4.11
24 25 0.475044 TAGCACAGGAAAAACCGGGT 59.525 50.000 6.32 0.00 44.74 5.28
25 26 1.834188 ATAGCACAGGAAAAACCGGG 58.166 50.000 6.32 0.00 44.74 5.73
26 27 3.366985 GGAAATAGCACAGGAAAAACCGG 60.367 47.826 0.00 0.00 44.74 5.28
27 28 3.506067 AGGAAATAGCACAGGAAAAACCG 59.494 43.478 0.00 0.00 44.74 4.44
28 29 5.468540 AAGGAAATAGCACAGGAAAAACC 57.531 39.130 0.00 0.00 39.35 3.27
29 30 5.629435 CGAAAGGAAATAGCACAGGAAAAAC 59.371 40.000 0.00 0.00 0.00 2.43
30 31 5.300792 ACGAAAGGAAATAGCACAGGAAAAA 59.699 36.000 0.00 0.00 0.00 1.94
31 32 4.825085 ACGAAAGGAAATAGCACAGGAAAA 59.175 37.500 0.00 0.00 0.00 2.29
32 33 4.394729 ACGAAAGGAAATAGCACAGGAAA 58.605 39.130 0.00 0.00 0.00 3.13
33 34 4.000988 GACGAAAGGAAATAGCACAGGAA 58.999 43.478 0.00 0.00 0.00 3.36
34 35 3.260884 AGACGAAAGGAAATAGCACAGGA 59.739 43.478 0.00 0.00 0.00 3.86
35 36 3.600388 AGACGAAAGGAAATAGCACAGG 58.400 45.455 0.00 0.00 0.00 4.00
36 37 5.613358 AAAGACGAAAGGAAATAGCACAG 57.387 39.130 0.00 0.00 0.00 3.66
37 38 6.385649 AAAAAGACGAAAGGAAATAGCACA 57.614 33.333 0.00 0.00 0.00 4.57
84 85 8.831715 AGAAAAGAAGAAGTGAAAAGCAAAAA 57.168 26.923 0.00 0.00 0.00 1.94
85 86 8.831715 AAGAAAAGAAGAAGTGAAAAGCAAAA 57.168 26.923 0.00 0.00 0.00 2.44
86 87 8.831715 AAAGAAAAGAAGAAGTGAAAAGCAAA 57.168 26.923 0.00 0.00 0.00 3.68
87 88 8.831715 AAAAGAAAAGAAGAAGTGAAAAGCAA 57.168 26.923 0.00 0.00 0.00 3.91
88 89 8.306761 AGAAAAGAAAAGAAGAAGTGAAAAGCA 58.693 29.630 0.00 0.00 0.00 3.91
89 90 8.694975 AGAAAAGAAAAGAAGAAGTGAAAAGC 57.305 30.769 0.00 0.00 0.00 3.51
171 172 8.925700 GGAAGAAATTTTAGAAAATGCGAACAT 58.074 29.630 1.10 0.00 38.53 2.71
172 173 7.923344 TGGAAGAAATTTTAGAAAATGCGAACA 59.077 29.630 1.10 0.00 38.53 3.18
173 174 8.293114 TGGAAGAAATTTTAGAAAATGCGAAC 57.707 30.769 1.10 0.00 38.53 3.95
174 175 8.879342 TTGGAAGAAATTTTAGAAAATGCGAA 57.121 26.923 1.10 0.00 38.53 4.70
175 176 9.487790 AATTGGAAGAAATTTTAGAAAATGCGA 57.512 25.926 1.10 0.00 38.53 5.10
190 191 8.672815 GGAACATTTTGTGAAAATTGGAAGAAA 58.327 29.630 0.00 0.00 38.97 2.52
191 192 8.046107 AGGAACATTTTGTGAAAATTGGAAGAA 58.954 29.630 0.00 0.00 38.97 2.52
192 193 7.563906 AGGAACATTTTGTGAAAATTGGAAGA 58.436 30.769 0.00 0.00 38.97 2.87
193 194 7.712205 AGAGGAACATTTTGTGAAAATTGGAAG 59.288 33.333 0.00 0.00 38.97 3.46
194 195 7.563906 AGAGGAACATTTTGTGAAAATTGGAA 58.436 30.769 0.00 0.00 38.97 3.53
195 196 7.123355 AGAGGAACATTTTGTGAAAATTGGA 57.877 32.000 0.00 0.00 38.97 3.53
196 197 7.712205 AGAAGAGGAACATTTTGTGAAAATTGG 59.288 33.333 0.00 0.00 38.97 3.16
197 198 8.652810 AGAAGAGGAACATTTTGTGAAAATTG 57.347 30.769 0.00 0.00 38.97 2.32
198 199 8.477256 TGAGAAGAGGAACATTTTGTGAAAATT 58.523 29.630 0.00 0.00 38.97 1.82
199 200 8.010733 TGAGAAGAGGAACATTTTGTGAAAAT 57.989 30.769 0.00 0.00 41.57 1.82
200 201 7.122650 ACTGAGAAGAGGAACATTTTGTGAAAA 59.877 33.333 0.00 0.00 34.41 2.29
201 202 6.603201 ACTGAGAAGAGGAACATTTTGTGAAA 59.397 34.615 0.00 0.00 0.00 2.69
202 203 6.122277 ACTGAGAAGAGGAACATTTTGTGAA 58.878 36.000 0.00 0.00 0.00 3.18
203 204 5.684704 ACTGAGAAGAGGAACATTTTGTGA 58.315 37.500 0.00 0.00 0.00 3.58
204 205 6.382869 AACTGAGAAGAGGAACATTTTGTG 57.617 37.500 0.00 0.00 0.00 3.33
205 206 7.410120 AAAACTGAGAAGAGGAACATTTTGT 57.590 32.000 0.00 0.00 0.00 2.83
206 207 7.761249 ACAAAAACTGAGAAGAGGAACATTTTG 59.239 33.333 0.00 0.00 38.98 2.44
207 208 7.840931 ACAAAAACTGAGAAGAGGAACATTTT 58.159 30.769 0.00 0.00 0.00 1.82
208 209 7.410120 ACAAAAACTGAGAAGAGGAACATTT 57.590 32.000 0.00 0.00 0.00 2.32
209 210 7.122650 TGAACAAAAACTGAGAAGAGGAACATT 59.877 33.333 0.00 0.00 0.00 2.71
210 211 6.603201 TGAACAAAAACTGAGAAGAGGAACAT 59.397 34.615 0.00 0.00 0.00 2.71
211 212 5.943416 TGAACAAAAACTGAGAAGAGGAACA 59.057 36.000 0.00 0.00 0.00 3.18
212 213 6.316390 TCTGAACAAAAACTGAGAAGAGGAAC 59.684 38.462 0.00 0.00 0.00 3.62
213 214 6.414732 TCTGAACAAAAACTGAGAAGAGGAA 58.585 36.000 0.00 0.00 0.00 3.36
214 215 5.989477 TCTGAACAAAAACTGAGAAGAGGA 58.011 37.500 0.00 0.00 0.00 3.71
215 216 6.683974 TTCTGAACAAAAACTGAGAAGAGG 57.316 37.500 0.00 0.00 0.00 3.69
216 217 8.400947 TCATTTCTGAACAAAAACTGAGAAGAG 58.599 33.333 0.00 0.00 0.00 2.85
217 218 8.279970 TCATTTCTGAACAAAAACTGAGAAGA 57.720 30.769 0.00 0.00 0.00 2.87
218 219 8.915871 TTCATTTCTGAACAAAAACTGAGAAG 57.084 30.769 0.00 0.00 36.46 2.85
219 220 9.703892 TTTTCATTTCTGAACAAAAACTGAGAA 57.296 25.926 0.00 0.00 41.05 2.87
220 221 9.703892 TTTTTCATTTCTGAACAAAAACTGAGA 57.296 25.926 8.60 0.00 41.05 3.27
263 264 9.450807 CGAACAACTTTTGAATATCTGAACTTT 57.549 29.630 0.00 0.00 0.00 2.66
264 265 7.591426 GCGAACAACTTTTGAATATCTGAACTT 59.409 33.333 0.00 0.00 0.00 2.66
265 266 7.041098 AGCGAACAACTTTTGAATATCTGAACT 60.041 33.333 0.00 0.00 0.00 3.01
266 267 7.078228 AGCGAACAACTTTTGAATATCTGAAC 58.922 34.615 0.00 0.00 0.00 3.18
267 268 7.202016 AGCGAACAACTTTTGAATATCTGAA 57.798 32.000 0.00 0.00 0.00 3.02
268 269 6.801539 AGCGAACAACTTTTGAATATCTGA 57.198 33.333 0.00 0.00 0.00 3.27
269 270 9.559958 AATAAGCGAACAACTTTTGAATATCTG 57.440 29.630 0.00 0.00 0.00 2.90
368 369 9.657419 ACAGTCTTTGAAATTCTTGAACATTTT 57.343 25.926 0.00 0.00 0.00 1.82
369 370 9.657419 AACAGTCTTTGAAATTCTTGAACATTT 57.343 25.926 0.00 0.00 0.00 2.32
370 371 9.305925 GAACAGTCTTTGAAATTCTTGAACATT 57.694 29.630 0.00 0.00 0.00 2.71
371 372 8.689972 AGAACAGTCTTTGAAATTCTTGAACAT 58.310 29.630 0.00 0.00 0.00 2.71
372 373 8.055279 AGAACAGTCTTTGAAATTCTTGAACA 57.945 30.769 0.00 0.00 0.00 3.18
373 374 7.374491 CGAGAACAGTCTTTGAAATTCTTGAAC 59.626 37.037 0.00 0.00 32.80 3.18
374 375 7.065803 ACGAGAACAGTCTTTGAAATTCTTGAA 59.934 33.333 10.74 0.00 32.80 2.69
375 376 6.538742 ACGAGAACAGTCTTTGAAATTCTTGA 59.461 34.615 10.74 0.00 32.80 3.02
376 377 6.719365 ACGAGAACAGTCTTTGAAATTCTTG 58.281 36.000 0.00 4.66 32.80 3.02
377 378 6.927294 ACGAGAACAGTCTTTGAAATTCTT 57.073 33.333 0.00 0.00 32.80 2.52
378 379 6.927294 AACGAGAACAGTCTTTGAAATTCT 57.073 33.333 0.00 0.00 32.80 2.40
379 380 7.186804 TGAAACGAGAACAGTCTTTGAAATTC 58.813 34.615 0.00 0.00 32.80 2.17
380 381 7.083875 TGAAACGAGAACAGTCTTTGAAATT 57.916 32.000 0.00 0.00 32.80 1.82
381 382 6.677781 TGAAACGAGAACAGTCTTTGAAAT 57.322 33.333 0.00 0.00 32.80 2.17
382 383 6.489127 TTGAAACGAGAACAGTCTTTGAAA 57.511 33.333 0.00 0.00 32.80 2.69
383 384 6.489127 TTTGAAACGAGAACAGTCTTTGAA 57.511 33.333 0.00 0.00 32.80 2.69
384 385 6.489127 TTTTGAAACGAGAACAGTCTTTGA 57.511 33.333 0.00 0.00 32.80 2.69
385 386 7.740519 AATTTTGAAACGAGAACAGTCTTTG 57.259 32.000 0.00 0.00 32.80 2.77
386 387 8.647226 CAAAATTTTGAAACGAGAACAGTCTTT 58.353 29.630 23.72 0.00 40.55 2.52
387 388 7.812669 ACAAAATTTTGAAACGAGAACAGTCTT 59.187 29.630 32.20 5.56 40.55 3.01
388 389 7.312899 ACAAAATTTTGAAACGAGAACAGTCT 58.687 30.769 32.20 5.91 40.55 3.24
389 390 7.506296 ACAAAATTTTGAAACGAGAACAGTC 57.494 32.000 32.20 0.00 40.55 3.51
390 391 7.596995 TGAACAAAATTTTGAAACGAGAACAGT 59.403 29.630 32.20 6.92 40.55 3.55
391 392 7.948137 TGAACAAAATTTTGAAACGAGAACAG 58.052 30.769 32.20 6.26 40.55 3.16
392 393 7.875316 TGAACAAAATTTTGAAACGAGAACA 57.125 28.000 32.20 16.07 40.55 3.18
451 452 9.702494 TGCAAACATTATATCAATTTGTGAACA 57.298 25.926 0.00 0.00 40.50 3.18
484 485 8.580431 CGAACAAATTTTAGAAACACGAACTTT 58.420 29.630 0.00 0.00 0.00 2.66
485 486 7.253519 GCGAACAAATTTTAGAAACACGAACTT 60.254 33.333 0.00 0.00 0.00 2.66
486 487 6.195798 GCGAACAAATTTTAGAAACACGAACT 59.804 34.615 0.00 0.00 0.00 3.01
487 488 6.021311 TGCGAACAAATTTTAGAAACACGAAC 60.021 34.615 0.00 0.00 0.00 3.95
488 489 6.028368 TGCGAACAAATTTTAGAAACACGAA 58.972 32.000 0.00 0.00 0.00 3.85
489 490 5.570344 TGCGAACAAATTTTAGAAACACGA 58.430 33.333 0.00 0.00 0.00 4.35
490 491 5.858159 TGCGAACAAATTTTAGAAACACG 57.142 34.783 0.00 0.00 0.00 4.49
504 505 8.066595 CCAAACATATTTTGAATTTGCGAACAA 58.933 29.630 10.22 0.00 0.00 2.83
505 506 7.307632 CCCAAACATATTTTGAATTTGCGAACA 60.308 33.333 10.22 0.00 0.00 3.18
506 507 7.014702 CCCAAACATATTTTGAATTTGCGAAC 58.985 34.615 10.22 0.00 0.00 3.95
507 508 6.148480 CCCCAAACATATTTTGAATTTGCGAA 59.852 34.615 10.22 0.00 0.00 4.70
508 509 5.641209 CCCCAAACATATTTTGAATTTGCGA 59.359 36.000 10.22 0.00 0.00 5.10
509 510 5.411053 ACCCCAAACATATTTTGAATTTGCG 59.589 36.000 10.22 0.00 0.00 4.85
510 511 6.816134 ACCCCAAACATATTTTGAATTTGC 57.184 33.333 10.22 0.00 0.00 3.68
539 540 7.778470 TTTTCCGTAGAATGCAAACATTTTT 57.222 28.000 0.00 0.00 46.59 1.94
540 541 7.778470 TTTTTCCGTAGAATGCAAACATTTT 57.222 28.000 0.00 0.00 46.59 1.82
541 542 7.440856 ACATTTTTCCGTAGAATGCAAACATTT 59.559 29.630 0.00 0.00 46.59 2.32
543 544 6.454795 ACATTTTTCCGTAGAATGCAAACAT 58.545 32.000 0.00 0.00 38.49 2.71
544 545 5.837437 ACATTTTTCCGTAGAATGCAAACA 58.163 33.333 0.00 0.00 0.00 2.83
545 546 6.398517 CGAACATTTTTCCGTAGAATGCAAAC 60.399 38.462 0.00 0.00 0.00 2.93
546 547 5.627367 CGAACATTTTTCCGTAGAATGCAAA 59.373 36.000 0.00 0.00 0.00 3.68
547 548 5.150683 CGAACATTTTTCCGTAGAATGCAA 58.849 37.500 0.00 0.00 0.00 4.08
548 549 4.214545 ACGAACATTTTTCCGTAGAATGCA 59.785 37.500 0.00 0.00 33.13 3.96
549 550 4.719040 ACGAACATTTTTCCGTAGAATGC 58.281 39.130 0.00 0.00 33.13 3.56
550 551 5.922546 TGACGAACATTTTTCCGTAGAATG 58.077 37.500 0.00 0.00 35.22 2.67
551 552 6.737254 ATGACGAACATTTTTCCGTAGAAT 57.263 33.333 0.00 0.00 35.45 2.40
552 553 6.548441 AATGACGAACATTTTTCCGTAGAA 57.452 33.333 0.00 0.00 45.60 2.10
564 565 7.545265 CCAAACATTTTATGGAATGACGAACAT 59.455 33.333 9.14 0.00 38.93 2.71
565 566 6.865726 CCAAACATTTTATGGAATGACGAACA 59.134 34.615 9.14 0.00 38.93 3.18
566 567 6.310224 CCCAAACATTTTATGGAATGACGAAC 59.690 38.462 9.14 0.00 38.93 3.95
567 568 6.393990 CCCAAACATTTTATGGAATGACGAA 58.606 36.000 9.14 0.00 38.93 3.85
568 569 5.105554 CCCCAAACATTTTATGGAATGACGA 60.106 40.000 9.14 0.00 38.93 4.20
569 570 5.108517 CCCCAAACATTTTATGGAATGACG 58.891 41.667 9.14 0.00 38.93 4.35
570 571 6.048732 ACCCCAAACATTTTATGGAATGAC 57.951 37.500 9.14 0.00 38.93 3.06
571 572 6.726299 TGTACCCCAAACATTTTATGGAATGA 59.274 34.615 9.14 0.00 38.93 2.57
572 573 6.940739 TGTACCCCAAACATTTTATGGAATG 58.059 36.000 0.00 0.00 41.64 2.67
573 574 6.351796 GCTGTACCCCAAACATTTTATGGAAT 60.352 38.462 0.00 0.00 36.27 3.01
574 575 5.046950 GCTGTACCCCAAACATTTTATGGAA 60.047 40.000 0.00 0.00 36.27 3.53
575 576 4.464597 GCTGTACCCCAAACATTTTATGGA 59.535 41.667 0.00 0.00 36.27 3.41
576 577 4.221703 TGCTGTACCCCAAACATTTTATGG 59.778 41.667 0.00 0.00 33.60 2.74
577 578 5.398603 TGCTGTACCCCAAACATTTTATG 57.601 39.130 0.00 0.00 0.00 1.90
578 579 6.227522 GTTTGCTGTACCCCAAACATTTTAT 58.772 36.000 22.98 0.00 46.10 1.40
579 580 5.602628 GTTTGCTGTACCCCAAACATTTTA 58.397 37.500 22.98 0.00 46.10 1.52
580 581 4.447290 GTTTGCTGTACCCCAAACATTTT 58.553 39.130 22.98 0.00 46.10 1.82
581 582 4.066646 GTTTGCTGTACCCCAAACATTT 57.933 40.909 22.98 0.00 46.10 2.32
582 583 3.744238 GTTTGCTGTACCCCAAACATT 57.256 42.857 22.98 0.00 46.10 2.71
585 586 2.429250 AGTTGTTTGCTGTACCCCAAAC 59.571 45.455 21.94 21.94 46.68 2.93
586 587 2.741145 AGTTGTTTGCTGTACCCCAAA 58.259 42.857 4.47 4.47 0.00 3.28
587 588 2.445682 AGTTGTTTGCTGTACCCCAA 57.554 45.000 0.00 0.00 0.00 4.12
588 589 2.172930 TGTAGTTGTTTGCTGTACCCCA 59.827 45.455 0.00 0.00 0.00 4.96
589 590 2.812011 CTGTAGTTGTTTGCTGTACCCC 59.188 50.000 0.00 0.00 0.00 4.95
590 591 3.250040 CACTGTAGTTGTTTGCTGTACCC 59.750 47.826 0.00 0.00 0.00 3.69
591 592 4.124238 TCACTGTAGTTGTTTGCTGTACC 58.876 43.478 0.00 0.00 0.00 3.34
592 593 5.728351 TTCACTGTAGTTGTTTGCTGTAC 57.272 39.130 0.00 0.00 0.00 2.90
593 594 7.360861 GCATATTCACTGTAGTTGTTTGCTGTA 60.361 37.037 0.00 0.00 0.00 2.74
594 595 6.568462 GCATATTCACTGTAGTTGTTTGCTGT 60.568 38.462 0.00 0.00 0.00 4.40
595 596 5.796935 GCATATTCACTGTAGTTGTTTGCTG 59.203 40.000 0.00 0.00 0.00 4.41
596 597 5.106157 GGCATATTCACTGTAGTTGTTTGCT 60.106 40.000 0.00 0.00 0.00 3.91
597 598 5.095490 GGCATATTCACTGTAGTTGTTTGC 58.905 41.667 0.00 0.00 0.00 3.68
598 599 5.106712 ACGGCATATTCACTGTAGTTGTTTG 60.107 40.000 0.00 0.00 0.00 2.93
599 600 5.001232 ACGGCATATTCACTGTAGTTGTTT 58.999 37.500 0.00 0.00 0.00 2.83
600 601 4.575885 ACGGCATATTCACTGTAGTTGTT 58.424 39.130 0.00 0.00 0.00 2.83
601 602 4.202245 ACGGCATATTCACTGTAGTTGT 57.798 40.909 0.00 0.00 0.00 3.32
602 603 5.579119 TGTAACGGCATATTCACTGTAGTTG 59.421 40.000 0.00 0.00 0.00 3.16
603 604 5.579511 GTGTAACGGCATATTCACTGTAGTT 59.420 40.000 0.00 0.00 0.00 2.24
604 605 5.105473 AGTGTAACGGCATATTCACTGTAGT 60.105 40.000 0.00 0.00 45.86 2.73
605 606 5.348986 AGTGTAACGGCATATTCACTGTAG 58.651 41.667 0.00 0.00 45.86 2.74
606 607 5.105675 TGAGTGTAACGGCATATTCACTGTA 60.106 40.000 7.58 0.00 45.86 2.74
607 608 4.181578 GAGTGTAACGGCATATTCACTGT 58.818 43.478 7.58 0.00 45.86 3.55
608 609 4.032900 GTGAGTGTAACGGCATATTCACTG 59.967 45.833 7.58 0.00 45.86 3.66
609 610 4.081642 AGTGAGTGTAACGGCATATTCACT 60.082 41.667 7.31 7.31 45.86 3.41
610 611 4.181578 AGTGAGTGTAACGGCATATTCAC 58.818 43.478 0.00 0.00 45.86 3.18
611 612 4.465632 AGTGAGTGTAACGGCATATTCA 57.534 40.909 0.00 0.00 45.86 2.57
612 613 5.109903 AGAAGTGAGTGTAACGGCATATTC 58.890 41.667 0.00 0.00 45.86 1.75
613 614 5.086104 AGAAGTGAGTGTAACGGCATATT 57.914 39.130 0.00 0.00 45.86 1.28
614 615 4.737855 AGAAGTGAGTGTAACGGCATAT 57.262 40.909 0.00 0.00 45.86 1.78
615 616 4.530710 AAGAAGTGAGTGTAACGGCATA 57.469 40.909 0.00 0.00 45.86 3.14
616 617 3.402628 AAGAAGTGAGTGTAACGGCAT 57.597 42.857 0.00 0.00 45.86 4.40
617 618 2.902705 AAGAAGTGAGTGTAACGGCA 57.097 45.000 0.00 0.00 45.86 5.69
618 619 5.438117 GTTTTAAGAAGTGAGTGTAACGGC 58.562 41.667 0.00 0.00 45.86 5.68
619 620 5.232838 ACGTTTTAAGAAGTGAGTGTAACGG 59.767 40.000 0.00 0.00 45.86 4.44
620 621 6.264909 ACGTTTTAAGAAGTGAGTGTAACG 57.735 37.500 0.00 0.00 45.86 3.18
621 622 7.959109 ACAAACGTTTTAAGAAGTGAGTGTAAC 59.041 33.333 11.66 0.00 0.00 2.50
622 623 7.958567 CACAAACGTTTTAAGAAGTGAGTGTAA 59.041 33.333 11.66 0.00 0.00 2.41
623 624 7.413219 CCACAAACGTTTTAAGAAGTGAGTGTA 60.413 37.037 21.66 0.00 0.00 2.90
624 625 6.311723 CACAAACGTTTTAAGAAGTGAGTGT 58.688 36.000 11.66 0.00 0.00 3.55
625 626 5.737290 CCACAAACGTTTTAAGAAGTGAGTG 59.263 40.000 21.66 16.65 0.00 3.51
626 627 5.413523 ACCACAAACGTTTTAAGAAGTGAGT 59.586 36.000 21.66 16.17 0.00 3.41
627 628 5.737290 CACCACAAACGTTTTAAGAAGTGAG 59.263 40.000 21.66 15.72 0.00 3.51
628 629 5.632959 CACCACAAACGTTTTAAGAAGTGA 58.367 37.500 21.66 0.00 0.00 3.41
629 630 4.264380 GCACCACAAACGTTTTAAGAAGTG 59.736 41.667 11.66 14.39 0.00 3.16
630 631 4.417506 GCACCACAAACGTTTTAAGAAGT 58.582 39.130 11.66 1.94 0.00 3.01
631 632 3.794564 GGCACCACAAACGTTTTAAGAAG 59.205 43.478 11.66 1.24 0.00 2.85
632 633 3.731264 CGGCACCACAAACGTTTTAAGAA 60.731 43.478 11.66 0.00 0.00 2.52
633 634 2.223294 CGGCACCACAAACGTTTTAAGA 60.223 45.455 11.66 0.00 0.00 2.10
634 635 2.113289 CGGCACCACAAACGTTTTAAG 58.887 47.619 11.66 2.83 0.00 1.85
635 636 1.471684 ACGGCACCACAAACGTTTTAA 59.528 42.857 11.66 0.00 35.90 1.52
636 637 1.093159 ACGGCACCACAAACGTTTTA 58.907 45.000 11.66 0.00 35.90 1.52
637 638 0.244178 AACGGCACCACAAACGTTTT 59.756 45.000 11.66 0.20 45.97 2.43
638 639 1.884444 AACGGCACCACAAACGTTT 59.116 47.368 7.96 7.96 45.97 3.60
639 640 3.593318 AACGGCACCACAAACGTT 58.407 50.000 0.00 0.00 43.74 3.99
640 641 1.137825 CAAACGGCACCACAAACGT 59.862 52.632 0.00 0.00 41.88 3.99
641 642 0.179161 TTCAAACGGCACCACAAACG 60.179 50.000 0.00 0.00 0.00 3.60
642 643 1.656594 GTTTCAAACGGCACCACAAAC 59.343 47.619 0.00 0.00 0.00 2.93
643 644 1.546476 AGTTTCAAACGGCACCACAAA 59.454 42.857 0.00 0.00 36.23 2.83
644 645 1.178276 AGTTTCAAACGGCACCACAA 58.822 45.000 0.00 0.00 36.23 3.33
645 646 1.944024 CTAGTTTCAAACGGCACCACA 59.056 47.619 0.00 0.00 36.23 4.17
646 647 1.944709 ACTAGTTTCAAACGGCACCAC 59.055 47.619 0.00 0.00 36.23 4.16
647 648 2.335316 ACTAGTTTCAAACGGCACCA 57.665 45.000 0.00 0.00 36.23 4.17
648 649 4.330894 GGTATACTAGTTTCAAACGGCACC 59.669 45.833 0.00 0.00 36.23 5.01
649 650 5.063060 CAGGTATACTAGTTTCAAACGGCAC 59.937 44.000 0.00 0.00 36.23 5.01
650 651 5.172934 CAGGTATACTAGTTTCAAACGGCA 58.827 41.667 0.00 0.00 36.23 5.69
651 652 5.173664 ACAGGTATACTAGTTTCAAACGGC 58.826 41.667 0.00 0.00 36.23 5.68
652 653 7.009907 GCTAACAGGTATACTAGTTTCAAACGG 59.990 40.741 15.23 0.00 36.23 4.44
653 654 7.758528 AGCTAACAGGTATACTAGTTTCAAACG 59.241 37.037 15.23 0.00 36.23 3.60
654 655 8.870879 CAGCTAACAGGTATACTAGTTTCAAAC 58.129 37.037 15.23 0.00 0.00 2.93
655 656 8.591072 ACAGCTAACAGGTATACTAGTTTCAAA 58.409 33.333 15.23 0.00 0.00 2.69
656 657 8.130671 ACAGCTAACAGGTATACTAGTTTCAA 57.869 34.615 15.23 0.00 0.00 2.69
657 658 7.713734 ACAGCTAACAGGTATACTAGTTTCA 57.286 36.000 15.23 0.00 0.00 2.69
658 659 8.901793 ACTACAGCTAACAGGTATACTAGTTTC 58.098 37.037 15.23 9.88 0.00 2.78
659 660 8.684520 CACTACAGCTAACAGGTATACTAGTTT 58.315 37.037 15.23 0.00 0.00 2.66
660 661 7.284944 CCACTACAGCTAACAGGTATACTAGTT 59.715 40.741 0.00 14.67 0.00 2.24
661 662 6.771749 CCACTACAGCTAACAGGTATACTAGT 59.228 42.308 0.00 0.00 0.00 2.57
662 663 6.294065 GCCACTACAGCTAACAGGTATACTAG 60.294 46.154 2.25 0.00 0.00 2.57
663 664 5.533903 GCCACTACAGCTAACAGGTATACTA 59.466 44.000 2.25 0.00 0.00 1.82
664 665 4.341520 GCCACTACAGCTAACAGGTATACT 59.658 45.833 2.25 0.00 0.00 2.12
665 666 4.341520 AGCCACTACAGCTAACAGGTATAC 59.658 45.833 0.00 0.00 39.29 1.47
666 667 4.543689 AGCCACTACAGCTAACAGGTATA 58.456 43.478 0.00 0.00 39.29 1.47
667 668 3.375699 AGCCACTACAGCTAACAGGTAT 58.624 45.455 0.00 0.00 39.29 2.73
668 669 2.816411 AGCCACTACAGCTAACAGGTA 58.184 47.619 0.00 0.00 39.29 3.08
669 670 1.645710 AGCCACTACAGCTAACAGGT 58.354 50.000 0.00 0.00 39.29 4.00
670 671 2.482142 GCTAGCCACTACAGCTAACAGG 60.482 54.545 2.29 0.00 42.07 4.00
671 672 2.166459 TGCTAGCCACTACAGCTAACAG 59.834 50.000 13.29 0.00 42.07 3.16
672 673 2.166459 CTGCTAGCCACTACAGCTAACA 59.834 50.000 13.29 0.00 42.07 2.41
673 674 2.815478 CTGCTAGCCACTACAGCTAAC 58.185 52.381 13.29 0.00 42.07 2.34
678 679 1.880340 GCGCTGCTAGCCACTACAG 60.880 63.158 13.29 2.40 38.18 2.74
679 680 2.184322 GCGCTGCTAGCCACTACA 59.816 61.111 13.29 0.00 38.18 2.74
680 681 1.590259 GAGCGCTGCTAGCCACTAC 60.590 63.158 18.48 0.00 39.88 2.73
681 682 2.808315 GAGCGCTGCTAGCCACTA 59.192 61.111 18.48 0.00 39.88 2.74
682 683 4.504916 CGAGCGCTGCTAGCCACT 62.505 66.667 18.48 3.82 39.88 4.00
683 684 4.803426 ACGAGCGCTGCTAGCCAC 62.803 66.667 18.48 2.85 39.88 5.01
684 685 4.498520 GACGAGCGCTGCTAGCCA 62.499 66.667 18.48 0.00 39.88 4.75
685 686 3.989698 TTGACGAGCGCTGCTAGCC 62.990 63.158 18.48 0.00 39.88 3.93
686 687 2.507102 TTGACGAGCGCTGCTAGC 60.507 61.111 18.48 8.10 39.88 3.42
687 688 1.008875 TTGTTGACGAGCGCTGCTAG 61.009 55.000 18.48 5.87 39.88 3.42
688 689 1.006688 TTGTTGACGAGCGCTGCTA 60.007 52.632 18.48 0.00 39.88 3.49
689 690 2.280119 TTGTTGACGAGCGCTGCT 60.280 55.556 18.48 0.00 43.88 4.24
690 691 1.282248 TAGTTGTTGACGAGCGCTGC 61.282 55.000 18.48 5.60 0.00 5.25
691 692 1.350193 ATAGTTGTTGACGAGCGCTG 58.650 50.000 18.48 10.31 0.00 5.18
692 693 2.080286 AATAGTTGTTGACGAGCGCT 57.920 45.000 11.27 11.27 0.00 5.92
693 694 2.495939 CAAATAGTTGTTGACGAGCGC 58.504 47.619 0.00 0.00 0.00 5.92
694 695 2.159707 CCCAAATAGTTGTTGACGAGCG 60.160 50.000 1.80 0.00 32.40 5.03
695 696 3.071479 TCCCAAATAGTTGTTGACGAGC 58.929 45.455 1.80 0.00 32.40 5.03
696 697 4.315803 ACTCCCAAATAGTTGTTGACGAG 58.684 43.478 1.80 1.90 32.40 4.18
697 698 4.202274 TGACTCCCAAATAGTTGTTGACGA 60.202 41.667 1.80 0.00 32.40 4.20
698 699 4.062293 TGACTCCCAAATAGTTGTTGACG 58.938 43.478 1.80 0.00 32.40 4.35
699 700 4.084013 CGTGACTCCCAAATAGTTGTTGAC 60.084 45.833 1.80 0.00 32.40 3.18
700 701 4.062293 CGTGACTCCCAAATAGTTGTTGA 58.938 43.478 1.80 0.00 32.40 3.18
701 702 4.062293 TCGTGACTCCCAAATAGTTGTTG 58.938 43.478 1.80 0.00 32.40 3.33
702 703 4.202326 ACTCGTGACTCCCAAATAGTTGTT 60.202 41.667 1.80 0.00 32.40 2.83
703 704 3.323979 ACTCGTGACTCCCAAATAGTTGT 59.676 43.478 1.80 0.00 32.40 3.32
704 705 3.926616 ACTCGTGACTCCCAAATAGTTG 58.073 45.455 0.00 0.00 34.25 3.16
705 706 4.566987 GAACTCGTGACTCCCAAATAGTT 58.433 43.478 0.00 0.00 0.00 2.24
706 707 3.367087 CGAACTCGTGACTCCCAAATAGT 60.367 47.826 0.00 0.00 34.11 2.12
707 708 3.119602 TCGAACTCGTGACTCCCAAATAG 60.120 47.826 0.00 0.00 40.80 1.73
708 709 2.821378 TCGAACTCGTGACTCCCAAATA 59.179 45.455 0.00 0.00 40.80 1.40
709 710 1.616865 TCGAACTCGTGACTCCCAAAT 59.383 47.619 0.00 0.00 40.80 2.32
710 711 1.034356 TCGAACTCGTGACTCCCAAA 58.966 50.000 0.00 0.00 40.80 3.28
711 712 1.254026 ATCGAACTCGTGACTCCCAA 58.746 50.000 0.00 0.00 40.80 4.12
712 713 1.201647 GAATCGAACTCGTGACTCCCA 59.798 52.381 0.00 0.00 40.80 4.37
713 714 1.794437 CGAATCGAACTCGTGACTCCC 60.794 57.143 11.08 0.00 40.80 4.30
714 715 1.536149 CGAATCGAACTCGTGACTCC 58.464 55.000 11.08 0.00 40.80 3.85
721 722 2.706273 CTGGAGTACGAATCGAACTCG 58.294 52.381 10.55 16.19 40.44 4.18
722 723 2.097791 AGCTGGAGTACGAATCGAACTC 59.902 50.000 10.55 5.77 39.12 3.01
723 724 2.093106 AGCTGGAGTACGAATCGAACT 58.907 47.619 10.55 0.00 0.00 3.01
724 725 2.097791 AGAGCTGGAGTACGAATCGAAC 59.902 50.000 10.55 0.00 0.00 3.95
725 726 2.097629 CAGAGCTGGAGTACGAATCGAA 59.902 50.000 10.55 0.00 0.00 3.71
726 727 1.671328 CAGAGCTGGAGTACGAATCGA 59.329 52.381 10.55 0.00 0.00 3.59
727 728 1.862008 GCAGAGCTGGAGTACGAATCG 60.862 57.143 0.00 0.00 0.00 3.34
728 729 1.846541 GCAGAGCTGGAGTACGAATC 58.153 55.000 0.00 0.00 0.00 2.52
729 730 0.101399 CGCAGAGCTGGAGTACGAAT 59.899 55.000 0.00 0.00 0.00 3.34
730 731 1.241990 ACGCAGAGCTGGAGTACGAA 61.242 55.000 0.00 0.00 0.00 3.85
731 732 1.241990 AACGCAGAGCTGGAGTACGA 61.242 55.000 0.00 0.00 0.00 3.43
732 733 1.073216 CAACGCAGAGCTGGAGTACG 61.073 60.000 0.00 0.00 0.00 3.67
733 734 0.243907 TCAACGCAGAGCTGGAGTAC 59.756 55.000 0.00 0.00 0.00 2.73
734 735 0.966179 TTCAACGCAGAGCTGGAGTA 59.034 50.000 0.00 0.00 0.00 2.59
735 736 0.320247 CTTCAACGCAGAGCTGGAGT 60.320 55.000 0.00 0.00 0.00 3.85
736 737 0.320247 ACTTCAACGCAGAGCTGGAG 60.320 55.000 0.00 0.00 0.00 3.86
737 738 0.601046 CACTTCAACGCAGAGCTGGA 60.601 55.000 0.00 0.00 0.00 3.86
738 739 1.572085 CCACTTCAACGCAGAGCTGG 61.572 60.000 0.00 0.00 0.00 4.85
739 740 1.572085 CCCACTTCAACGCAGAGCTG 61.572 60.000 0.00 0.00 0.00 4.24
740 741 1.302033 CCCACTTCAACGCAGAGCT 60.302 57.895 0.00 0.00 0.00 4.09
741 742 2.970974 GCCCACTTCAACGCAGAGC 61.971 63.158 0.00 0.00 0.00 4.09
742 743 1.302033 AGCCCACTTCAACGCAGAG 60.302 57.895 0.00 0.00 0.00 3.35
743 744 1.597854 CAGCCCACTTCAACGCAGA 60.598 57.895 0.00 0.00 0.00 4.26
744 745 2.620112 CCAGCCCACTTCAACGCAG 61.620 63.158 0.00 0.00 0.00 5.18
745 746 2.594303 CCAGCCCACTTCAACGCA 60.594 61.111 0.00 0.00 0.00 5.24
746 747 4.043200 GCCAGCCCACTTCAACGC 62.043 66.667 0.00 0.00 0.00 4.84
747 748 3.365265 GGCCAGCCCACTTCAACG 61.365 66.667 0.00 0.00 0.00 4.10
784 785 2.582226 TCCAATAGCGCGCTGACG 60.582 61.111 41.85 27.57 44.07 4.35
785 786 2.860628 CGTCCAATAGCGCGCTGAC 61.861 63.158 41.85 34.59 0.00 3.51
786 787 2.582226 CGTCCAATAGCGCGCTGA 60.582 61.111 41.85 27.80 0.00 4.26
787 788 4.285149 GCGTCCAATAGCGCGCTG 62.285 66.667 41.85 26.60 45.48 5.18
793 794 2.875786 GCTCGCTGCGTCCAATAGC 61.876 63.158 22.48 17.74 0.00 2.97
794 795 3.313750 GCTCGCTGCGTCCAATAG 58.686 61.111 22.48 11.69 0.00 1.73
803 804 2.526120 GGTATTGGACGCTCGCTGC 61.526 63.158 0.00 0.00 38.57 5.25
804 805 1.883084 GGGTATTGGACGCTCGCTG 60.883 63.158 0.00 0.00 37.99 5.18
805 806 2.499685 GGGTATTGGACGCTCGCT 59.500 61.111 0.00 0.00 37.99 4.93
806 807 2.960129 CGGGTATTGGACGCTCGC 60.960 66.667 0.00 0.00 38.84 5.03
807 808 1.876714 CACGGGTATTGGACGCTCG 60.877 63.158 0.00 0.00 38.84 5.03
808 809 0.527817 CTCACGGGTATTGGACGCTC 60.528 60.000 0.00 0.00 38.84 5.03
809 810 0.968901 TCTCACGGGTATTGGACGCT 60.969 55.000 0.00 0.00 38.84 5.07
810 811 0.108520 TTCTCACGGGTATTGGACGC 60.109 55.000 0.00 0.00 37.64 5.19
811 812 2.373540 TTTCTCACGGGTATTGGACG 57.626 50.000 0.00 0.00 0.00 4.79
812 813 4.124970 GGTATTTCTCACGGGTATTGGAC 58.875 47.826 0.00 0.00 0.00 4.02
813 814 3.775866 TGGTATTTCTCACGGGTATTGGA 59.224 43.478 0.00 0.00 0.00 3.53
814 815 4.145365 TGGTATTTCTCACGGGTATTGG 57.855 45.455 0.00 0.00 0.00 3.16
815 816 7.119262 GGAATATGGTATTTCTCACGGGTATTG 59.881 40.741 0.00 0.00 0.00 1.90
816 817 7.166167 GGAATATGGTATTTCTCACGGGTATT 58.834 38.462 0.00 0.00 0.00 1.89
817 818 6.296259 GGGAATATGGTATTTCTCACGGGTAT 60.296 42.308 0.00 0.00 0.00 2.73
818 819 5.012354 GGGAATATGGTATTTCTCACGGGTA 59.988 44.000 0.00 0.00 0.00 3.69
819 820 4.202430 GGGAATATGGTATTTCTCACGGGT 60.202 45.833 0.00 0.00 0.00 5.28
820 821 4.202419 TGGGAATATGGTATTTCTCACGGG 60.202 45.833 0.00 0.00 27.51 5.28
821 822 4.968259 TGGGAATATGGTATTTCTCACGG 58.032 43.478 0.00 0.00 27.51 4.94
824 825 4.641396 CGCTGGGAATATGGTATTTCTCA 58.359 43.478 0.00 0.00 31.71 3.27
827 828 2.159627 CGCGCTGGGAATATGGTATTTC 59.840 50.000 5.56 0.00 0.00 2.17
833 834 3.716006 CGCGCGCTGGGAATATGG 61.716 66.667 30.48 5.07 0.00 2.74
886 887 3.914426 AGAAATAGTGGCGATCTGGTT 57.086 42.857 0.00 0.00 0.00 3.67
1175 1198 0.037882 ACCAGCATCAGAGACACGTG 60.038 55.000 15.48 15.48 0.00 4.49
1240 1263 0.463116 AAAACTCACTTGGTCGCGGT 60.463 50.000 6.13 0.00 0.00 5.68
1259 1282 1.403382 CGAGCACTTAGAGAGCAAGCA 60.403 52.381 0.00 0.00 34.13 3.91
1301 1324 1.305930 GCCTTAAACAGCCGACAGGG 61.306 60.000 0.00 0.00 38.20 4.45
1439 1463 1.372307 GCCAAGGCCATTTTGCAGT 59.628 52.632 5.01 0.00 34.56 4.40
1530 1564 2.193447 CACATCCAATGTCGTCCTACG 58.807 52.381 0.00 0.00 42.70 3.51
1665 1703 6.486248 CCAATTACATAACCAGACATCAACG 58.514 40.000 0.00 0.00 0.00 4.10
1683 1721 2.109774 CTTTGCATCCCAGGCCAATTA 58.890 47.619 5.01 0.00 0.00 1.40
1721 1760 1.806542 ACCATCAGTGCGTCATTCAAC 59.193 47.619 0.00 0.00 0.00 3.18
1732 1771 6.093909 TGAAGCATACAATGTTACCATCAGTG 59.906 38.462 0.00 0.00 37.01 3.66
1799 1850 0.236711 CCAAAGTCTGTGCTTGAGCG 59.763 55.000 0.00 0.00 45.83 5.03
1800 1851 1.265365 GACCAAAGTCTGTGCTTGAGC 59.735 52.381 0.00 0.00 40.10 4.26
1801 1852 1.528586 CGACCAAAGTCTGTGCTTGAG 59.471 52.381 0.00 0.00 41.16 3.02
1802 1853 1.581934 CGACCAAAGTCTGTGCTTGA 58.418 50.000 0.00 0.00 41.16 3.02
1803 1854 0.588252 CCGACCAAAGTCTGTGCTTG 59.412 55.000 0.00 0.00 41.16 4.01
1804 1855 1.166531 GCCGACCAAAGTCTGTGCTT 61.167 55.000 0.00 0.00 41.16 3.91
1805 1856 1.598130 GCCGACCAAAGTCTGTGCT 60.598 57.895 0.00 0.00 41.16 4.40
1806 1857 1.845809 CTGCCGACCAAAGTCTGTGC 61.846 60.000 0.00 0.00 41.16 4.57
1807 1858 1.230635 CCTGCCGACCAAAGTCTGTG 61.231 60.000 0.00 0.00 41.16 3.66
1808 1859 1.071471 CCTGCCGACCAAAGTCTGT 59.929 57.895 0.00 0.00 41.16 3.41
1809 1860 1.071471 ACCTGCCGACCAAAGTCTG 59.929 57.895 0.00 0.00 41.16 3.51
1810 1861 1.071471 CACCTGCCGACCAAAGTCT 59.929 57.895 0.00 0.00 41.16 3.24
1824 1875 1.230635 CGCTGCTGCAGTAAACACCT 61.231 55.000 28.50 0.00 39.64 4.00
1825 1876 1.207593 CGCTGCTGCAGTAAACACC 59.792 57.895 28.50 10.78 39.64 4.16
1887 1952 5.212532 AGCATGCAAAGTGAACCATTTTA 57.787 34.783 21.98 0.00 0.00 1.52
1940 2010 7.713073 GGGAATTGAGGAAAGATCAAGTACTAG 59.287 40.741 0.00 0.00 39.86 2.57
1949 2019 2.954989 GCAGGGGAATTGAGGAAAGATC 59.045 50.000 0.00 0.00 0.00 2.75
2089 2159 7.446769 ACGGCACCAATCTAAACATGTATATA 58.553 34.615 0.00 0.00 0.00 0.86
2112 2213 6.668323 ACAGTCAAAACAGGATAATGAAACG 58.332 36.000 0.00 0.00 0.00 3.60
2159 2260 3.513912 ACAAATGTCTCCCGTAGATGTCA 59.486 43.478 0.00 0.00 36.36 3.58
2168 2269 4.503741 ACATCAAAACAAATGTCTCCCG 57.496 40.909 0.00 0.00 30.35 5.14
2176 2277 7.174772 GGCTATCCCAAAAACATCAAAACAAAT 59.825 33.333 0.00 0.00 0.00 2.32
2214 2315 1.355720 CCTTTGATGGAGGTTGGGTCT 59.644 52.381 0.00 0.00 0.00 3.85
2217 2318 2.603075 TTCCTTTGATGGAGGTTGGG 57.397 50.000 0.00 0.00 37.43 4.12
2242 2343 5.605534 GATGTTAGAGCATGTGTGGATACT 58.394 41.667 0.00 0.00 37.61 2.12
2268 2369 8.121086 GGATATCATGTATGAAGAATGATTGCG 58.879 37.037 4.83 0.00 40.58 4.85
2293 2394 1.618343 CCCAGCCCACAAACTTTTAGG 59.382 52.381 0.00 0.00 0.00 2.69
2639 2803 7.361457 GGCAAACGAGAAGCTATAACCTAAAAA 60.361 37.037 0.00 0.00 0.00 1.94
2640 2804 6.093082 GGCAAACGAGAAGCTATAACCTAAAA 59.907 38.462 0.00 0.00 0.00 1.52
2641 2805 5.583457 GGCAAACGAGAAGCTATAACCTAAA 59.417 40.000 0.00 0.00 0.00 1.85
2642 2806 5.114081 GGCAAACGAGAAGCTATAACCTAA 58.886 41.667 0.00 0.00 0.00 2.69
2643 2807 4.690122 GGCAAACGAGAAGCTATAACCTA 58.310 43.478 0.00 0.00 0.00 3.08
2644 2808 3.532542 GGCAAACGAGAAGCTATAACCT 58.467 45.455 0.00 0.00 0.00 3.50
2645 2809 3.946308 GGCAAACGAGAAGCTATAACC 57.054 47.619 0.00 0.00 0.00 2.85
2666 2832 1.032014 AAACCAGTGTCCACATGTGC 58.968 50.000 20.81 8.40 0.00 4.57
2839 3016 2.288395 GGTTTGCTTGTTGGTGGAGATG 60.288 50.000 0.00 0.00 0.00 2.90
2881 3061 2.991190 GGATGTGAGCAATTGCAAAGTG 59.009 45.455 30.89 6.15 46.16 3.16
2896 4155 3.880040 TGGCATACACAGGGATGTG 57.120 52.632 6.83 6.83 44.74 3.21
2971 4230 1.550130 TTCCTGGGCTTCGTAGGGTG 61.550 60.000 0.00 0.00 32.39 4.61
2991 4250 2.627515 TGAAGTTGAGCTGAGCTTGT 57.372 45.000 9.00 0.00 39.88 3.16
3274 4597 4.282449 TGTGATCGAAGAGTCCAACCTTTA 59.718 41.667 0.00 0.00 43.63 1.85
3458 4781 0.953471 GTCCGCATGGCACTTGTACA 60.953 55.000 0.00 0.00 34.14 2.90
3482 4805 0.950555 GCTCTGCATCCACAACGTGA 60.951 55.000 0.00 0.00 35.23 4.35
3488 4811 0.978907 TCAGAAGCTCTGCATCCACA 59.021 50.000 7.94 0.00 43.95 4.17
3520 4843 0.461548 CGCTTCACCCTCATGCTCTA 59.538 55.000 0.00 0.00 0.00 2.43
3526 4849 1.153086 GATGCCGCTTCACCCTCAT 60.153 57.895 1.48 0.00 0.00 2.90
3581 4904 3.365265 GCCCTTGTCCCTTGTGCG 61.365 66.667 0.00 0.00 0.00 5.34
3634 4957 4.100808 GCTTCAAGATAGGATCTGGACTGT 59.899 45.833 0.00 0.00 39.04 3.55
3918 5242 3.394836 GGCCCTCAAGGAGAGCGT 61.395 66.667 0.00 0.00 43.31 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.